Citrus Sinensis ID: 047787

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-
Protein Sequence
MQGQGDRDAPSNSLININPDQQRQMDFFRDWLNQGSPHLLIGQMRESGIDSENHRRAFTELMNQVDAELTARGIGFQRKHPGNGRVENESLMVQQANVSAAQHTSSIDLNATREQQQEIGGGQTLSNPAKPDGPVSTADQNILPAAGTDSSKPILISSGGGNPLKAVGDTSGQGHGKGGASSSNNNRPSFKRRAPGDAPRQLLLGESSSSVQQEQARESEQDDVVAAPQEIGGTVALNNEITGVGMLGAANSSAMNGTQNVVAAGITVLEAGIGGAPTVNQHHPSSVAAANRLGGSSVMNQNQISNEARNGAAAAAPPGFINNNNQASIRARQTEIFERNIRVRRNPNLQDFTPAARALTQSSPSQTAMFYPFDHFLNSLPQPQFHPTPAPQFVREPEPFQTQQVQGITMPSGSPSSSAYTPQLQPRNVMFRAAQFEPGSSSHMAANMNLANGNPNVPGNAAAAATQDGSNSRISAVPFWYPRQAINYSNRMLEVLRRAESRGLQGDYRPLHAADAAREMDNSSRGGNMRLQPRRPGFVPSDERRDGDHPGSSIPLAFEAHNILARVRMTGSLGLENFMVNRSVFLGPFEEEDEEDELEDMRLDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLARIH
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHcccEEEEEEccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHcccccccccccccHHHHHHccccEEcccccccccccccccccccccccEEEEccccccccHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEccHHHHHHHHHHHHHHccccccHHHHcccccccccccccHHHHHHccccccEEEEccEEEEcccccccccccccccccccccccccccccccccHcHccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEccccccccccccccccccccccccccccccccccHcccccccccEEEcccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHcccHccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHccccEcccccccccccEEEEEHEccccccEEEEccccccHHHHHHHHHHHHcccccccccHccccc
Coil and Loop (DISEMBL)
mqgqgdrdapsnslininpdqqRQMDFFRDWlnqgsphllIGQMresgidseNHRRAFTELMNQVDAELtargigfqrkhpgngrvenESLMVQQANVsaaqhtssidLNATREQqqeigggqtlsnpakpdgpvstadqnilpaagtdsskpilissgggnplkavgdtsgqghgkggasssnnnrpsfkrrapgdaprqlllgesssSVQQEQAReseqddvvaapqeiggtvalnneitgvgmlgaanssamngtQNVVAAGITVLEagiggaptvnqhhpssvaaanrlggssvmnqNQISnearngaaaaappgfinnnnqASIRARQTEIFERnirvrrnpnlqdftpaaraltqsspsqtamfypfdhflnslpqpqfhptpapqfvrepepfqtqqvqgitmpsgspsssaytpqlqprnvmfraaqfepgssshMAANMnlangnpnvpgnaaaaatqdgsnsrisavpfwyprqainySNRMLEVLRRAesrglqgdyrplhaadaaremdnssrggnmrlqprrpgfvpsderrdgdhpgssiplafEAHNILARVRMTGslglenfmvnrsvflgpfeeedeedeleDMRLDIDDMTYEELLALGdeigpvctGLREEAILANLTvqrygsesptnngsccicqekyadgenlgkldcghdfhpnciKQWLVrknqcpickmtglarih
Flexible Loop (DISEMBL)
mqgqgdrdapsnslininpDQQRQMDFFRDWLNQGSPHLLIGQMRESGIDSENHRRAFTELMNQVDAELTARGIGFQRKHPGNGRVENESLMVQQANVSAAQHTSSIDLNATREQQQEIGGGQTLSNPAKPDGPVSTADQNILPAAGTDSSKPILISSGGGNPLKAVGDTSGQGHgkggasssnnnrpsfKRRAPGDAPRQLLLGESSSSVQQEQARESEQDDVVAAPQEIGGTVALNNEITGVGMLGAANSSAMNGTQNVVAAGITVLEAGIGGAPTVNQHHPSSVAAANRLGGSSVMNQNQISNEARNGAAAAAPPGFINNNNQASIRARQTEIfernirvrrnpnlqdftPAARALTQSSPSQTAMFYPFDHFLNSLPQPQFHPTPAPQFVREPEPFQTQQVQGITMPSGSPSSSAYTPQLQPRNVMFRAAQFEPGSSSHMAANMNLANGNPNVPGNAAAAATQDGSNSRISAVPFWYPRQAINYSNRMLEVLRRAESRGLQGDYRPLHAADAAremdnssrggnmrlqprrpGFVPSDERRDGDHPGSSIPLAFEAHNILARVRMTGSLGLENFMVNRSVFLGpfeeedeedeLEDMRLDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRygsesptnngsCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLARIH
Low Complexity Region (SEG)
MQGQGDRDAPSNSLININPDQQRQMDFFRDWLNQGSPHLLIGQMRESGIDSENHRRAFTELMNQVDAELTARGIGFQRKHPGNGRVENESLMVQQANVSAAQHTSSIDLNATREQQQEIGGGQTLSNPAKPDGPVSTADQNILPAAGTDSSKPILISSGGGNPLKAVGDTSGQGHGKGGASSSNNNRPSFKRRAPGDAPRQLLLGESSSSVQQEQARESEQDDVVAAPQEIGGTVALNNEITGVGMLGAANSSAMNGTQNVVAAGITVLEAGIGGAPTVNQHHPSSVAAANRLGGSSVMNQNQISnearngaaaaappgfinnnnQASIRARQTEIFERNIRVRRNPNLQDFTPAARALTQSSPSQTAMFYPFDHFLNSLPQPQFHPTPAPQFVREPEPFQTQQVQGITMPSGSPSSSAYTPQLQPRNVMFRAAQFEPGSSSHMAANMNLangnpnvpgnaaaaaTQDGSNSRISAVPFWYPRQAINYSNRMLEVLRRAESRGLQGDYRPLHAADAAREMDNSSRGGNMRLQPRRPGFVPSDERRDGDHPGSSIPLAFEAHNILARVRMTGSLGLENFMVNRSVFLGPFeeedeedeledmrldiddmTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLARIH
Disordered region (IsUnstruct)
*************************DFFRDWLNQGSPHLLIG********************************************************************************************************************************************************************************************IGGTVALNNEITGVGMLGAANSSAMNGTQNVVAAGITVLEAGIGGA********************************************************************************************MFYPFDHFLN***********************************************************************************************ISAVPFWYPRQAINYSNRMLEVLR*********************************************************PLAFEAHNILARVRMTGSLGLENFMVNRSVFLG*****************IDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL****
Disordered Region (DISOPRED)
**************ININPDQQRQMDFFRDWLNQGSPHLLI*****************TELMNQVDAELTARG*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************SVFL*********DELEDMRLDIDDMTYEELLALGDEIGPV**GLR**AILANL************N*SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA***
Disordered Region (DISEMBL)
**********SNSLININPDQQRQMDFFRDWLNQGSPHLLIGQMRESGIDSENHRRAFTELMNQVDAELTARGIGFQRKHPGNGRVENESLMVQQ*********SSIDLNATREQQQEIGGGQTLS*********STADQNILPAAGTDSSKPILISSGGGNPLKAVGD*******************SFKRRAPGDAPRQLLLGE******************VAAPQEIGGTVALNNEITGVGMLGAANSSAMNGTQNVVAAGITVLEAGIGGAPTVNQHHPSSVAAANRLGGSSVMNQNQISNEARNGAAAAAPPGFINNNNQASIRARQTEIFERNIRVRRNPNLQDFTPAARALTQSSPSQTAMFYPFDHFLNSLPQPQFHPTPAPQFVREPEP**********************PQLQPRNVMFRAAQFEPGSSSHMAANMNLANGNPNVPGN***********SRISAVPFWYPRQAINYSNRMLEVLRRAESRGLQGDYRPLHAADAAREMDNSSRGGNMRLQPRRPGFVP**********GSSIPLAFEAHNILARVRMTGSLGLENFMVNRSVFLGPFEEEDEEDELEDMRLDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLARIH
Disordered Region (DISPRO)
**********SNSLININPDQQRQMDFFRDWLNQGSPHLLIGQMRESGIDSENHRRAFTELMNQVDAELTARGIGFQRKHPGNGRV***************************EQ************************************KP**********************************************************QQEQARESEQDDVVAAP**IGGTVALNNEITGVGMLGAANS**MNG****VAAGITVLEAGIGGAPTVNQHHPSSVAA**************************************************************************************FLNSLP*P**HPT*******************************YT*******************************************************VPFW*********************************************************F*****RRDGDHPGSSIPLAFEAHNILARVRMTGSLGLENFMVNRSVFLGPFEEEDEEDELEDMRLDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMT******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGQGDRDAPSNSLININPDQQRQMDFFRDWLNQGSPHLLIGQMRESGIDSENHRRAFTELMNQVDAELTARGIGFQRKHPGNGRVENESLMVQQANVSAAQHTSSIDLNATREQQQEIGGGQTLSNPAKPDGPVSTADQNILPAAGTDSSKPILISSGGGNPLKAVGDTSGQGHGKGGASSSNNNRPSFKRRAPGDAPRQLLLGESSSSVQQEQARESEQDDVVAAPQEIGGTVALNNEITGVGMLGAANSSAMNGTQNVVAAGITVLEAGIGGAPTVNQHHPSSVAAANRLGGSSVMNQNQISNEARNGAAAAAPPGFINNNNQASIRARQTEIFERNIRVRRNPNLQDFTPAARALTQSSPSQTAMFYPFDHFLNSLPQPQFHPTPAPQFVREPEPFQTQQVQGITMPSGSPSSSAYTPQLQPRNVMFRAAQFEPGSSSHMAANMNLANGNPNVPGNAAAAATQDGSNSRISAVPFWYPRQAINYSNRMLEVLRRAESRGLQGDYRPLHAADAAREMDNSSRGGNMRLQPRRPGFVPSDERRDGDHPGSSIPLAFEAHNILARVRMTGSLGLENFMVNRSVFLGPFExxxxxxxxxxxxxxxxxxxxxELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLARIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	701	2.2.26 [Sep-21-2011]
Q9LT17	340	E3 ubiquitin ligase BIG B	no	no	0.128	0.264	0.430	4e-14
Q8L649	248	E3 ubiquitin ligase BIG B	no	no	0.139	0.395	0.371	8e-11
P87237	821	Uncharacterized RING fing	yes	no	0.154	0.131	0.346	2e-10
E9QAU8	347	RING finger protein 165 O	yes	no	0.122	0.247	0.323	7e-10
Q6ZSG1	346	RING finger protein 165 O	yes	no	0.122	0.248	0.323	8e-10
Q7T037	757	E3 ubiquitin-protein liga	N/A	no	0.099	0.092	0.369	1e-09
Q9WTV7	600	E3 ubiquitin-protein liga	no	no	0.115	0.135	0.360	2e-09
Q9NVW2	624	E3 ubiquitin-protein liga	no	no	0.115	0.129	0.360	2e-09
Q641J8	622	E3 ubiquitin-protein liga	N/A	no	0.099	0.112	0.356	5e-09
Q07G42	639	E3 ubiquitin-protein liga	yes	no	0.099	0.109	0.356	5e-09

>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1

 Score = 80.9 bits (198), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 602 RLDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRY--GSESPTNNGSCCICQEKY 659
            +D D+++YEELLALGD +G    GL  + I A+L  +RY  G      N SC IC+  Y
Sbjct: 237 EMDPDELSYEELLALGDIVGTESRGLSADTI-ASLPSKRYKEGDNQNGTNESCVICRLDY 295

Query: 660 ADGENLGKLDCGHDFHPNCIKQWLVRKNQCPIC 692
            D E+L  L C H +H  CI  WL     CP+C
Sbjct: 296 EDDEDLILLPCKHSYHSECINNWLKINKVCPVC 328

E3 ubiquitin-ligase probably involved in organ size regulation.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1

 Score = 69.7 bits (169), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 603 LDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGS----CCICQEK 658
           +D D MTYEEL+ LG+ +G    GL +E ++  L  ++Y   S  +       C ICQ K
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQE-LIETLPTKKYKFGSIFSRKRAGERCVICQLK 203

Query: 659 YADGENLGKLDCGHDFHPNCIKQWLVRKNQCPIC--KMTGLARIH 701
           Y  GE    L C H +H  CI +WL     CP+C  ++ G   IH
Sbjct: 204 YKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEVFGEPSIH 248

E3 ubiquitin-ligase that limits organ size, and possibly seed size, in a dose-dependent manner. Negatively regulates the duration of cell proliferation in leaves and petals independently of the major phytohormones (e.g. auxin, cytokinin, gibberellin, brassinosteroids, ethylene, abscisic acid, jasmonic acid), probably by targeting growth stimulators for degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 16/124 (12%)

Query: 584 VFLGPFEEEDEEDELEDMRLDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRYG- 642
           VF G F E      L  + L  D+  YE+LLAL   +GP      ++ + ++  V+R G 
Sbjct: 698 VFGGLFPEH--HPVLSTVSLFSDNPMYEDLLALTTYLGPA-----KKPVASHEDVKRSGG 750

Query: 643 ------SESPTNNGSCCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVR-KNQCPICKM 694
                   S ++  SC IC E Y +G+   KL  C H FH  CI QWL    N CP+C+ 
Sbjct: 751 LFAYFDDASLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRA 810

Query: 695 TGLA 698
            G+ 
Sbjct: 811 HGVT 814

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)

Query: 609 TYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNG-------------SCCIC 655
           +YEELL L D +G V  G  +  I       +Y    P ++               C IC
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTIC 298

Query: 656 QEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
                DGE++ +L C H FH  C+ QWL    +CPIC++
Sbjct: 299 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 337

Mus musculus (taxid: 10090)

>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)

Query: 609 TYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTN-------------NGSCCIC 655
           +YEELL L D +G V  G  +  I       +Y    P +             +  C IC
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTIC 297

Query: 656 QEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
                DGE++ +L C H FH  C+ QWL    +CPIC++
Sbjct: 298 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 336

Homo sapiens (taxid: 9606)

>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 626 GLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR 685
           GL +E I  NL+ + YG        +C +C  +Y +G  L KL C H++H +CI +WL  
Sbjct: 680 GLTKEQI-DNLSTRNYGENDALK--TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE 736

Query: 686 KNQCPICKMTGLA 698
            + CPIC+   L 
Sbjct: 737 NSTCPICRRAVLV 749

Acts as a E3 ubiquitin-protein ligase specific for ldb1, mediating ubiquitination and proteasome-dependent degradation of excess ldb1 in a RING-dependent manner. Does not degrade ldb1 bound to lhx1/lim1, nor lim1 itself and thus contributes to the establishment of proper ldb1-lhx1/lim1 stoichiometry and the formation of a ldb1-lhx1/lim1 complex. Interferes with Spemann organizer function and suppresses secondary axis formation induced by ldb1 and lhx1/lim1.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 613 LLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGH 672
           LL   DE  P   GL +E I  NL ++ +G        +C +C  +Y +G  L KL C H
Sbjct: 512 LLNEDDEDQP--RGLTKEQI-DNLAMRSFGENDALK--TCSVCITEYTEGNKLRKLPCSH 566

Query: 673 DFHPNCIKQWLVRKNQCPICKMTGLA 698
           ++H +CI +WL   + CPIC+   L+
Sbjct: 567 EYHVHCIDRWLSENSTCPICRRAVLS 592

E3 ubiquitin-protein ligase. Acts as a negative coregulator for LIM homeodomain transcription factors by mediating the ubiquitination and subsequent degradation of LIM cofactors LDB1 and LDB2 and by mediating the recruitment the SIN3a/histone deacetylase corepressor complex. Ubiquitination and degradation of LIM cofactors LDB1 and LDB2 allows DNA-bound LIM homeodomain transcription factors to interact with other protein partners such as RLIM. Plays a role in telomere length-mediated growth suppression by mediating the ubiquitination and degradation of TERF1. Acts as an activator of random inactivation of X chromosome in the embryo, a stochastic process in which one X chromosome is inactivated to minimize sex-related dosage differences of X-encoded genes in somatic cells of female placental mammals.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 613 LLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGH 672
           LL   D+  P   GL +E I  NL ++ +G        +C +C  +Y +G  L KL C H
Sbjct: 536 LLNEDDDDQP--RGLTKEQI-DNLAMRSFGENDALK--TCSVCITEYTEGNKLRKLPCSH 590

Query: 673 DFHPNCIKQWLVRKNQCPICKMTGLA 698
           ++H +CI +WL   + CPIC+   LA
Sbjct: 591 EYHVHCIDRWLSENSTCPICRRAVLA 616

E3 ubiquitin-protein ligase. Acts as a negative coregulator for LIM homeodomain transcription factors by mediating the ubiquitination and subsequent degradation of LIM cofactors LDB1 and LDB2 and by mediating the recruitment the SIN3a/histone deacetylase corepressor complex. Ubiquitination and degradation of LIM cofactors LDB1 and LDB2 allows DNA-bound LIM homeodomain transcription factors to interact with other protein partners such as RLIM. Plays a role in telomere length-mediated growth suppression by mediating the ubiquitination and degradation of TERF1. Acts as an activator of random inactivation of X chromosome in the embryo, a stochastic process in which one X chromosome is inactivated to minimize sex-related dosage differences of X-encoded genes in somatic cells of female placental mammals.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a PE=1 SV=1

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 626 GLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR 685
           GL +E I  NL+ + +G        +C +C  +Y +G  L KL C H++H +CI +WL  
Sbjct: 545 GLTKEQI-DNLSTRNFGENDALK--TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE 601

Query: 686 KNQCPICKMTGLA 698
            + CPIC+   L 
Sbjct: 602 NSTCPICRRAVLV 614

Acts as a E3 ubiquitin-protein ligase specific for ldb1, mediating ubiquitination and proteasome-dependent degradation of excess ldb1 in a RING-dependent manner. Does not degrade ldb1 bound to lhx1/lim1, nor lim1 itself and thus contributes to the establishment of proper ldb1-lhx1/lim1 stoichiometry and the formation of a ldb1-lhx1/lim1 complex. Interferes with Spemann organizer function and suppresses secondary axis formation induced by ldb1 and lhx1/lim1.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 626 GLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR 685
           GL +E I  NL+ + +G        +C +C  +Y +G  L KL C H++H +CI +WL  
Sbjct: 562 GLTKEQI-DNLSTRNFGENDALK--TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE 618

Query: 686 KNQCPICKMTGLA 698
            + CPIC+   L 
Sbjct: 619 NSTCPICRRAVLV 631

Acts as a E3 ubiquitin-protein ligase specific for ldb1, mediating ubiquitination and proteasome-dependent degradation of excess ldb1 in a RING-dependent manner. Does not degrade ldb1 bound to lhx1/lim1, nor lim1 itself and thus contributes to the establishment of proper ldb1-lhx1/lim1 stoichiometry and the formation of a ldb1-lhx1/lim1 complex. Interferes with Spemann organizer function and suppresses secondary axis formation induced by ldb1 and lhx1/lim1.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
224084358	650	predicted protein [Populus trichocarpa]	0.730	0.787	0.344	1e-49
307135853	713	zinc finger protein binding protein [Cuc	0.520	0.511	0.336	1e-40
449530824	713	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.517	0.509	0.330	3e-39
449450233	713	PREDICTED: uncharacterized protein LOC10	0.517	0.509	0.330	3e-39
225458665	734	PREDICTED: uncharacterized protein LOC10	0.352	0.336	0.402	2e-38
147845456	1022	hypothetical protein VITISV_042276 [Viti	0.352	0.241	0.402	7e-38
255565246	144	conserved hypothetical protein [Ricinus	0.189	0.923	0.592	3e-37
297846872	648	zinc finger family protein [Arabidopsis	0.196	0.212	0.534	1e-36
356509741	675	PREDICTED: uncharacterized protein LOC10	0.495	0.514	0.318	2e-35
357437777	708	Zinc finger protein [Medicago truncatula	0.495	0.490	0.321	3e-35

>gi|224084358|ref|XP_002307271.1| predicted protein [Populus trichocarpa] gi|222856720|gb|EEE94267.1| predicted protein [Populus trichocarpa]

 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 227/659 (34%), Positives = 303/659 (45%), Gaps = 147/659 (22%)

Query: 96  ANVSAAQHTSSIDLNATRE-----QQQEIGGGQTLSNPAKPDGPVSTADQNILPAAGTDS 150
           AN SA  H  +IDLNA  +       QEIGG  T  N                PA+ + +
Sbjct: 72  ANSSALPH--NIDLNAAYQGNDIGDSQEIGGSDTEKN---------------APASDSSN 114

Query: 151 SKPILISSG-GGNPLKAVGDTSGQGHGKGGASSSNNNRPSFKRRAPGDAPRQLLLGESSS 209
           S   +ISSG  G  L    D  G+    GG       R S KRRAP DA  QL LGESS 
Sbjct: 115 SNTNMISSGIAGYVLDE--DEGGEDSDSGG------RRISCKRRAPEDA-GQLSLGESSR 165

Query: 210 SVQQEQARESEQDDVVAAPQEIGGTVALNNEITG--VGMLGAANSSAMNGTQNVVAAGIT 267
           SV+Q    +S Q   V   +   G  A+NN       G LG                   
Sbjct: 166 SVKQ---GDSFQQPAVINQENAPGRSAVNNHPNAGYPGQLG------------------D 204

Query: 268 VLEAGIGGAPTVNQHHPSSVAAA---NRLGGSSVMNQNQISNEARNGAAAAAPPGFINNN 324
            L  G+G  P   Q  PSS A +      G SS M+QN                      
Sbjct: 205 RLVVGVGAPPAPCQ--PSSAAGSGLGTEAGTSSEMHQN---------------------- 240

Query: 325 NQASIRARQTEIFERNIRVRRNPNLQDFTP------AARALTQSSPSQTAMFYPFDHFLN 378
              S   RQ E  +RNIR+R + +  D  P        R     SP Q  +FY F+H  +
Sbjct: 241 ---SSMVRQAENSQRNIRLRSSESQSDSVPDNLSAWTTRNPHVQSPGQLPVFYQFNHLPS 297

Query: 379 SLPQPQFH----PTPAPQFVREP---EPFQTQQVQGIT-MPSGSPSSSAYT---PQLQPR 427
           S    +      P+P   F+  P   +  QT Q   +T   +G PS+S+        Q  
Sbjct: 298 SNTAAEAGMVSVPSPIQPFMGTPNSSQTLQTFQWNDVTRATTGEPSTSSMNGGNALHQDL 357

Query: 428 NVM------FRAAQFEPGSSSHMAANMNLANGNPNVPGNAAAAATQDGSNSRISAVPFWY 481
           N M          +F+  +  +M+AN++ ANG  + PGN +    Q+GS+S   + P  +
Sbjct: 358 NFMNDPKNGTLPPEFQRANLPNMSANLHFANGR-DFPGNISPIP-QNGSSSHQPSAPTLF 415

Query: 482 PRQAI--NYSNRMLEVLRRAESRGLQGDYRPLH--AADAAREMDNSSRGGNMR--LQPRR 535
           P++ +  +Y  RM ++  R E  G    YRP H  A+ AA E + S   GN+R    P  
Sbjct: 416 PQRNMLEHYPGRMPDLANRTEPGGPVC-YRPFHLGASPAAEERELSEGSGNIRPSQMPLG 474

Query: 536 PGF-----------------VPSDERRDGDHPGSSIPLAFEAHNILARVRMTGSLGLENF 578
            G                  + S +RR+         LA E  N L  V M GSL   + 
Sbjct: 475 QGLAMTANTETATREMTLWALISVQRRNR--------LATEVRNALTLVLMRGSLQHGDV 526

Query: 579 M-VNRSVFLGPFEEEDEEDELEDMRLDIDDMTYEELLALGDEIGPVCTGLREEAILANLT 637
           M ++RS F G   ++DE DE EDMRLD+D+M+YE+LLAL + +G V TGL E+AI+ANL 
Sbjct: 527 MLIDRSAFFG-DSDDDEPDEHEDMRLDVDNMSYEQLLALEERMGNVSTGLSEDAIVANLK 585

Query: 638 VQRYGSE---SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
             +Y +    S + +  CCICQE+YAD ++LGKL CGHDFH NCIK+WLV+KN CPICK
Sbjct: 586 RWKYQTVAGGSSSEDEPCCICQEEYADEDDLGKLKCGHDFHFNCIKKWLVQKNNCPICK 644

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135853|gb|ADN33722.1| zinc finger protein binding protein [Cucumis melo subsp. melo]

 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 207/443 (46%), Gaps = 78/443 (17%)

Query: 320 FINNNNQASIRARQTEIFERNIRVR-RNPNLQD-FTPAARALTQSSPSQT---AMFYPFD 374
             +NN   SI A  ++  +RN R+R  + N QD F  A  A+    P  +   A   P +
Sbjct: 282 LTSNNFSESIVAESSDSSQRNYRIRISSSNAQDSFASAGTAVRHPGPPSSQLPARLLPAE 341

Query: 375 HFLNSLPQPQFHPTPA---------PQFVREPEPFQTQQVQGITMPSGSPSSSA------ 419
           H L+  P P      A         P   R  +P++          S S S+        
Sbjct: 342 HILDLRPAPAVDNVSAQGQPIMIHVPALPRNLQPYRWNGSSTSRSGSSSSSAGERQVVQR 401

Query: 420 --YTPQLQPRNV----MFRAAQFEPG----SSSHMAANMNLANGNPNVPGNAAAAATQDG 469
               P +  RNV    MF  A    G     SS   A+ NLA     +PGN A+  ++ G
Sbjct: 402 EEVRPSIMGRNVSEHPMFLPANELRGLVRSPSSRALASSNLA-----IPGNVAST-SRVG 455

Query: 470 SNSRI----------SAVPFWYPRQAINYSNRMLEVLRRAESRGLQGDYRPLHAADAARE 519
           S+S +           + P  +PR+   Y  R L      ES G   +Y     + +A+E
Sbjct: 456 SSSGVHPSSGPWIPPESSPTQFPRRLTEYVRRQLFASATNESGGRTSNYSQRSGSTSAQE 515

Query: 520 MDNSS---RGGNMRLQPRRPGFVPSDERRDGDHPGSSIPLAFEA---------------- 560
           M  SS   R G+  LQPR   ++  + R DG   G  +P +                   
Sbjct: 516 MVLSSGSGRRGHHLLQPRSALWM--ERRGDG---GLGLPYSLRTLASSAEGSDNNRLVSE 570

Query: 561 --HNILARVRMTGSLGLENFMV-NRSVFLGPFEEEDEEDELEDMRLDIDDMTYEELLALG 617
              N+L  VR   SL +E+ M+ ++S+F G     D  D   DMRLD+D+M+YEELLAL 
Sbjct: 571 HLRNVLGLVRRGESLRVEDVMILDQSLFFG---MADIYDRHRDMRLDVDNMSYEELLALE 627

Query: 618 DEIGPVCTGLREEAILANLTVQRY--GSESPTNNGSCCICQEKYADGENLGKLDCGHDFH 675
           + IG V TGL EE I+A L  +++    ES      CC+CQE+Y +GE++G L+CGHDFH
Sbjct: 628 ERIGNVNTGLNEETIVARLKQKKHVNAVESQVEEEPCCVCQEEYVEGEDIGTLECGHDFH 687

Query: 676 PNCIKQWLVRKNQCPICKMTGLA 698
             CIKQWL++KN CPICK TGLA
Sbjct: 688 TACIKQWLMQKNLCPICKTTGLA 710

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530824|ref|XP_004172392.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228751 [Cucumis sativus]

 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 207/445 (46%), Gaps = 82/445 (18%)

Query: 320 FINNNNQASIRARQTEIFERNIRVR-RNPNLQD-FTPAARALTQSSPSQTAM---FYPFD 374
             +N+   SI A  ++  +RN R+R  + N  D F  A  A+    P  + +     P +
Sbjct: 282 LTSNSFSESIVAESSDSSQRNYRIRISSSNAPDSFASAGTAVRHPGPPSSQLPGRLLPAE 341

Query: 375 HFLNSLPQPQFHPTPA---------PQFVREPEPF------------------QTQQVQG 407
           H L+  P P      A         P   R  +P+                  + Q VQ 
Sbjct: 342 HILDLRPAPAVDNVSAQGQPIMIHVPALPRSLQPYRWNGSSSSRSGSSSSSAGERQVVQR 401

Query: 408 ITM-PSGSPSSSAYTPQLQPRNVMFRAAQFEPGSSSHMAANMNLANGNPNVPGNAAAAAT 466
             + PS    + +  P   P N + R     P S +       LA+ N ++PGN A+  +
Sbjct: 402 EEVRPSSMGRNVSEHPMFVPANEL-RGLVRSPSSRA-------LASSNLSIPGNVAST-S 452

Query: 467 QDGSNSRI----------SAVPFWYPRQAINYSNRMLEVLRRAESRGLQGDYRPLHAADA 516
           + GS+S +           + P  +PR+   Y  R L      ES G   +Y     + +
Sbjct: 453 RVGSSSGVHPSSGPWIPPESSPTQFPRRLTEYVRRQLFASATNESGGRTSNYSQRSGSTS 512

Query: 517 AREM---DNSSRGGNMRLQPRRPGFVPSDERRDGDH----PGSSIPLAFEAH-------- 561
           A+EM     S R G+  LQPR   ++   ERR GD     P S   LA  A         
Sbjct: 513 AQEMVLSSGSGRRGHHLLQPRSALWM---ERR-GDSGLGLPYSLRTLATSAEGSDNNRLV 568

Query: 562 -----NILARVRMTGSLGLENFMV-NRSVFLGPFEEEDEEDELEDMRLDIDDMTYEELLA 615
                N+L  VR   SL +E+ M+ ++S+F G     D  D   DMRLD+D+M+YEELLA
Sbjct: 569 SEHLRNVLGLVRRGESLRVEDVMILDQSLFFG---MADIYDRHRDMRLDVDNMSYEELLA 625

Query: 616 LGDEIGPVCTGLREEAILANLTVQRY--GSESPTNNGSCCICQEKYADGENLGKLDCGHD 673
           L + IG V TGL EE I+A L  ++     +S      CC+CQE+Y DGE++G L+CGHD
Sbjct: 626 LEERIGNVNTGLNEETIVARLKQKKRVNAVDSQVEEEPCCVCQEEYVDGEDIGTLECGHD 685

Query: 674 FHPNCIKQWLVRKNQCPICKMTGLA 698
           FH  CIKQWL++KN CPICK TGLA
Sbjct: 686 FHTACIKQWLMQKNLCPICKTTGLA 710

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450233|ref|XP_004142868.1| PREDICTED: uncharacterized protein LOC101203243 [Cucumis sativus]

 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 207/445 (46%), Gaps = 82/445 (18%)

Query: 320 FINNNNQASIRARQTEIFERNIRVR-RNPNLQD-FTPAARALTQSSPSQTAM---FYPFD 374
             +N+   SI A  ++  +RN R+R  + N  D F  A  A+    P  + +     P +
Sbjct: 282 LTSNSFSESIVAESSDSSQRNYRIRISSSNAPDSFASAGTAVRHPGPPSSQLPGRLLPAE 341

Query: 375 HFLNSLPQPQFHPTPA---------PQFVREPEPF------------------QTQQVQG 407
           H L+  P P      A         P   R  +P+                  + Q VQ 
Sbjct: 342 HILDLRPAPAVDNVSAQGQPIMIHVPALPRSLQPYRWNGSSSSRSGSSSSSAGERQVVQR 401

Query: 408 ITM-PSGSPSSSAYTPQLQPRNVMFRAAQFEPGSSSHMAANMNLANGNPNVPGNAAAAAT 466
             + PS    + +  P   P N + R     P S +       LA+ N ++PGN A+  +
Sbjct: 402 EEVRPSSMGRNVSEHPMFVPANEL-RGLVRSPSSRA-------LASSNLSIPGNVAST-S 452

Query: 467 QDGSNSRI----------SAVPFWYPRQAINYSNRMLEVLRRAESRGLQGDYRPLHAADA 516
           + GS+S +           + P  +PR+   Y  R L      ES G   +Y     + +
Sbjct: 453 RVGSSSGVHPSSGPWIPPESSPTQFPRRLTEYVRRQLFASATNESGGRTSNYSQRSGSTS 512

Query: 517 AREM---DNSSRGGNMRLQPRRPGFVPSDERRDGDH----PGSSIPLAFEAH-------- 561
           A+EM     S R G+  LQPR   ++   ERR GD     P S   LA  A         
Sbjct: 513 AQEMVLSSGSGRRGHHLLQPRSALWM---ERR-GDSGLGLPYSLRTLATSAEGSDNNRLV 568

Query: 562 -----NILARVRMTGSLGLENFMV-NRSVFLGPFEEEDEEDELEDMRLDIDDMTYEELLA 615
                N+L  VR   SL +E+ M+ ++S+F G     D  D   DMRLD+D+M+YEELLA
Sbjct: 569 SEHLRNVLGLVRRGESLRVEDVMILDQSLFFG---MADIYDRHRDMRLDVDNMSYEELLA 625

Query: 616 LGDEIGPVCTGLREEAILANLTVQRY--GSESPTNNGSCCICQEKYADGENLGKLDCGHD 673
           L + IG V TGL EE I+A L  ++     +S      CC+CQE+Y DGE++G L+CGHD
Sbjct: 626 LEERIGNVNTGLNEETIVARLKQKKRVNAVDSQVEEEPCCVCQEEYVDGEDIGTLECGHD 685

Query: 674 FHPNCIKQWLVRKNQCPICKMTGLA 698
           FH  CIKQWL++KN CPICK TGLA
Sbjct: 686 FHTACIKQWLMQKNLCPICKTTGLA 710

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458665|ref|XP_002282892.1| PREDICTED: uncharacterized protein LOC100267740 [Vitis vinifera]

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/283 (40%), Positives = 148/283 (52%), Gaps = 36/283 (12%)

Query: 446 ANMNLANGNPNVPGNAAAAATQDGSNSRISA-VPFWYPRQ--AINYSNRMLEVLRR---- 498
            N NLA GN   PGN+A+ +    S+   S+  P W P +     YS R+ E +RR    
Sbjct: 455 TNRNLAGGNMTTPGNSASTSRTGSSSGVNSSSAPTWGPPRDPPSQYSRRLSEYVRRSLFS 514

Query: 499 ---AESRGLQGDYRPLHA--ADAAREMDNSSRGGNMRLQPRRPGFVPSDERRDGDHPGSS 553
              A+S G   +Y PLH+  + +++E+  SS  GN       P      ER      G  
Sbjct: 515 SVGADSGGQSSNYSPLHSGPSPSSQEVAPSSGAGNQGHHQSYPRSALLMERHGDGVLG-- 572

Query: 554 IP---------------LAFEAHNILARVRMTGSLGLENFMV-NRSVFLGPFEEEDEEDE 597
           IP               L  E  N+L  +R    L  E+ M+ ++SVF G     D  D 
Sbjct: 573 IPYSLRTLAAASEGRSRLVSEIRNVLDLMRRGEDLRFEDVMILDQSVFFG---VADIHDR 629

Query: 598 LEDMRLDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSES---PTNNGSCCI 654
             DMRLD+D+M+YEELLAL + IG VCTGL EE IL  L  ++Y S +         CCI
Sbjct: 630 HRDMRLDVDNMSYEELLALEERIGDVCTGLSEETILKQLKQRKYWSVARGAEVEVEPCCI 689

Query: 655 CQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697
           CQE+Y DGE++G L+CGHDFH  CIKQWL+ KN CPICK T L
Sbjct: 690 CQEEYGDGEDIGTLECGHDFHYGCIKQWLMHKNLCPICKTTAL 732

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845456|emb|CAN83345.1| hypothetical protein VITISV_042276 [Vitis vinifera]

 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/283 (40%), Positives = 148/283 (52%), Gaps = 36/283 (12%)

Query: 446 ANMNLANGNPNVPGNAAAAATQDGSNSRISA-VPFWYPRQ--AINYSNRMLEVLRR---- 498
            N NLA GN   PGN+A+ +    S+   S+  P W P +     YS R+ E +RR    
Sbjct: 455 TNRNLAGGNMTTPGNSASTSRTGSSSGVNSSSAPTWGPPRDPPSQYSRRLSEYVRRSLFS 514

Query: 499 ---AESRGLQGDYRPLHA--ADAAREMDNSSRGGNMRLQPRRPGFVPSDERRDGDHPGSS 553
              A+S G   +Y PLH+  + +++E+  SS  GN       P      ER      G  
Sbjct: 515 SVGADSGGQSSNYSPLHSGPSPSSQEVAPSSGAGNQGHHQSYPRSALLMERHGDGVLG-- 572

Query: 554 IP---------------LAFEAHNILARVRMTGSLGLENFMV-NRSVFLGPFEEEDEEDE 597
           IP               L  E  N+L  +R    L  E+ M+ ++SVF G     D  D 
Sbjct: 573 IPYSLRTLAAASEGRSRLVSEIRNVLDLMRRGEDLRFEDVMILDQSVFFGV---ADIHDR 629

Query: 598 LEDMRLDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSES---PTNNGSCCI 654
             DMRLD+D+M+YEELLAL + IG VCTGL EE IL  L  ++Y S +         CCI
Sbjct: 630 HRDMRLDVDNMSYEELLALEERIGDVCTGLSEEXILKQLKQRKYWSVARGAEVEVEPCCI 689

Query: 655 CQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697
           CQE+Y DGE++G L+CGHDFH  CIKQWL+ KN CPICK T L
Sbjct: 690 CQEEYGDGEDIGTLECGHDFHYGCIKQWLMHKNLCPICKTTAL 732

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565246|ref|XP_002523615.1| conserved hypothetical protein [Ricinus communis] gi|223537177|gb|EEF38810.1| conserved hypothetical protein [Ricinus communis]

 Score =  163 bits (413), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 83/140 (59%), Positives = 98/140 (70%), Gaps = 7/140 (5%)

Query: 562 NILARVRMTGSLGLENFMV-NRSVFLGPFEEEDEEDELEDMRLDIDDMTYEELLALGDEI 620
           N LA VR  GSL  E+ MV +RS+  G  EE D  +E   MRLD+D+M+YEELLAL D I
Sbjct: 6   NALALVRRGGSLQFEDVMVIDRSMLYGVPEEPDLHEE---MRLDVDNMSYEELLALEDHI 62

Query: 621 GPVCTGLREEAILANLTVQRY---GSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPN 677
           G VCTG+ EEAI   +  Q+Y    S S   +  CCICQE+YADG++LGKLDCGH FH N
Sbjct: 63  GNVCTGISEEAIQTRMKRQKYRAIKSGSTQEDEPCCICQEEYADGQDLGKLDCGHYFHFN 122

Query: 678 CIKQWLVRKNQCPICKMTGL 697
           CIKQWLV+KN CPICK T L
Sbjct: 123 CIKQWLVQKNNCPICKTTAL 142

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846872|ref|XP_002891317.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297337159|gb|EFH67576.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/144 (53%), Positives = 96/144 (66%), Gaps = 6/144 (4%)

Query: 557 AFEAHNILARVRMTGSLGLENFMV-NRSVFLGPFEEEDEEDELEDMRLDIDDMTYEELLA 615
           A E  N+L  +R  G+L  E+ M+ N+S+ LG     D  D   DMRLD+D+MTYEELL+
Sbjct: 500 AAEIRNVLEHMRRAGNLRFEDVMLLNQSMVLGV---ADIHDRYRDMRLDVDNMTYEELLS 556

Query: 616 LGDEIGPVCTGLREEAILANLTVQRYGSE--SPTNNGSCCICQEKYADGENLGKLDCGHD 673
           L + IG VCTGL EE I   L  Q+Y S   SP     CCICQE+Y +GE++G L+CGHD
Sbjct: 557 LEERIGDVCTGLNEETISNRLKQQKYKSSTSSPQEVEPCCICQEEYKEGEDIGMLECGHD 616

Query: 674 FHPNCIKQWLVRKNQCPICKMTGL 697
           FH  CIK+WL +KN CPICK TGL
Sbjct: 617 FHSQCIKEWLKQKNLCPICKTTGL 640

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509741|ref|XP_003523604.1| PREDICTED: uncharacterized protein LOC100815573, partial [Glycine max]

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 139/437 (31%), Positives = 195/437 (44%), Gaps = 90/437 (20%)

Query: 331 ARQTEIFERNIRVRRNP-NLQDFTPAARALTQS-------SPSQ--TAMFYPFDHFLNS- 379
           A  +E F RN R+R NP N  +  P     T S       SPS   +   +  ++ LNS 
Sbjct: 259 AGSSESFHRNFRLRLNPSNPANSVPPTAFSTGSMIRHSGVSPSSQVSQRLHSVNNSLNSR 318

Query: 380 --------LPQPQFHPTPAPQFVREPEPFQTQQVQGITMPSGSPSSSAYTPQLQPRNVMF 431
                   +PQ Q H    P   R  + F+           GS S + ++      +++ 
Sbjct: 319 SAPPIDNVVPQSQPHVIHVPALPRNRQSFR--------WSGGSSSRNIHSSN----SIIS 366

Query: 432 RAAQFEPGSSSHMAANM-------------NLANG-----------NPNVPGNAAAAATQ 467
            A   E  SS  M+ NM             NL              N ++PGN A++ T 
Sbjct: 367 PARDQEDASSRRMSRNMLEHPVFQPATDLRNLVQNPTVRASSSSSVNLSIPGNVASSRTG 426

Query: 468 DGSNSRISAVPFWY-PRQAINYSNRMLEVLRRA----ESRGL---QGDYRPLHAADAARE 519
               +  S+ P W  P     +  R+ E +RR+     S  +     +Y  L +  +  E
Sbjct: 427 SNPATNPSSAPTWVSPPNPPQHPRRLSEYVRRSLFSPSSDAIGSPSNNYSSLRSGFSTSE 486

Query: 520 MDNSSRGGNMRLQPRRPGFVPSDERRDGDHPGSSIP---------------LAFEAHNIL 564
               S G      PR   ++   ER+ G   G  IP               L  E HN+L
Sbjct: 487 PRALSSGSGA--NPRSSSWL---ERQGGSEFG--IPYSLRTLAVASEGSSRLVSELHNVL 539

Query: 565 ARVRMTGSLGLENFMV-NRSVFLGPFEEEDEEDELEDMRLDIDDMTYEELLALGDEIGPV 623
            R+R  G++  E+ ++     FL      D  D   DMRLD+D+M+YEELLAL + IG V
Sbjct: 540 GRMRRGGNMRFEDVVILEHQSFLSGIA--DVHDRHGDMRLDVDNMSYEELLALEERIGNV 597

Query: 624 CTGLREEAILANLTVQRYGSE--SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQ 681
            TGL EE +   L  +++  E  S T+   CC+CQE Y DG ++G LDCGHDFH +CIKQ
Sbjct: 598 STGLSEETLSKLLKQRKHSVEKGSETDAEPCCVCQEDYGDGNDIGTLDCGHDFHSSCIKQ 657

Query: 682 WLVRKNQCPICKMTGLA 698
           WL++KN CPICK TGLA
Sbjct: 658 WLMQKNLCPICKTTGLA 674

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437777|ref|XP_003589164.1| Zinc finger protein [Medicago truncatula] gi|355478212|gb|AES59415.1| Zinc finger protein [Medicago truncatula]

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 142/441 (32%), Positives = 191/441 (43%), Gaps = 94/441 (21%)

Query: 328 SIRARQTEIFERNIRVRRNPNLQD-------FTPAARALTQSSPSQTAMFYPFDHFLNSL 380
           S  A  +E F RN R+R NP+ Q        F+  +     S PS   M   +    N L
Sbjct: 291 STVAGSSESFHRNFRLRINPSSQQISLPPATFSHGSVIRNSSVPSSAPMLQRYHPINNPL 350

Query: 381 ------PQPQFHPTPAPQFVREPEPFQTQQ------------------VQGI---TMPSG 413
                 P    HP   P  V  P   ++ Q                  V G+   T P  
Sbjct: 351 DLRSVQPVNVMHPQSEPLLVHVPALPRSAQSIRWSGGSSSTNNHSSNSVLGLDRDTQPHE 410

Query: 414 SPSSSAYT------PQLQPRNVMFRAAQFEPGSSSHMAANMNLANGNPNVPGNAAAAATQ 467
              S A        P   P NV  R A   P  SS        ++ N ++PGN A+++  
Sbjct: 411 EAGSRAMARNILDHPVFVPANV--RNAARNPARSS--------SSANLSIPGNVASSSRT 460

Query: 468 DGSNSRI--SAVPFWYPR-QAINYSNRMLEVLRRA------ESRGLQGDYRPLHAADAAR 518
             +   +  S+V  W  R     Y  R+ E +RR+      E      +Y  L     + 
Sbjct: 461 APNPPALNPSSVSAWVSRPNPQQYPRRLSEYVRRSLFSPGSEGGSSSNNYPSLRGPSTSS 520

Query: 519 EMDNSSRGGNMRLQPRRPGFVPSDERRDGDHPGSSIP---------------LAFEAHNI 563
           E  N   G N       PG  P  ER      G  IP               L  E  N+
Sbjct: 521 ESRNLPSGTN-------PGSSPWMERSADSEFG--IPYSLRSLAAAGEGSSRLVSELRNV 571

Query: 564 LARVRMTGSLGLENFMV-NRSVFLGPFEEEDEEDELEDMRLDIDDMTYEELLALGDEIGP 622
           L  +R  G+L  E+ M+ + S+F G     D  D   DMRLD+D+M+YEELLAL + IG 
Sbjct: 572 LGIMRRGGNLRFEDVMILDHSMFAG---IADMHDRHRDMRLDVDNMSYEELLALEERIGN 628

Query: 623 VCTGLREEAILANLTVQRY-----GSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPN 677
           V TGL EE I+ +L  ++Y     GS+S T    CC+CQE++ + +++G LDCGHD+H +
Sbjct: 629 VSTGLNEETIMKHLKQKKYSVDGLGSQSETE--PCCVCQEEFKNEDDIGSLDCGHDYHID 686

Query: 678 CIKQWLVRKNQCPICKMTGLA 698
           CIKQWL  KN CPICK TGLA
Sbjct: 687 CIKQWLTHKNICPICKTTGLA 707

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
TAIR|locus:2028225	645	AT1G45180 [Arabidopsis thalian	0.196	0.213	0.458	3.9e-26
TAIR|locus:2160031	691	AT5G42940 [Arabidopsis thalian	0.189	0.192	0.431	2.9e-22
TAIR|locus:2124271	666	MBR2 "MED25 BINDING RING-H2 PR	0.209	0.220	0.380	9e-21
TAIR|locus:2155513	272	AT5G67120 [Arabidopsis thalian	0.119	0.308	0.511	2.4e-18
TAIR|locus:2027804	367	AT1G73760 [Arabidopsis thalian	0.249	0.476	0.335	1.1e-15
TAIR|locus:2030933	368	AT1G17970 [Arabidopsis thalian	0.121	0.230	0.470	8.7e-15
TAIR|locus:2159634	525	AT5G10650 [Arabidopsis thalian	0.121	0.161	0.473	1.8e-14
TAIR|locus:2149378	520	AT5G24870 [Arabidopsis thalian	0.276	0.373	0.319	2.3e-14
TAIR|locus:2086305	486	AT3G15070 [Arabidopsis thalian	0.126	0.183	0.468	3.8e-14
TAIR|locus:2009660	494	AT1G53190 [Arabidopsis thalian	0.126	0.180	0.42	6.4e-14

TAIR|locus:2028225 AT1G45180 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
 Identities = 66/144 (45%), Positives = 86/144 (59%)

Query:   557 AFEAHNILARVRMTGSLGLENFMV-NRSVFLGPFXXXXXXXXXXXXXXXXXXXTYEELLA 615
             A E  NIL  +R  G+L LE+ M+ N+S+ LG                     TYEELL+
Sbjct:   497 ASEIRNILEHMRRAGNLRLEDVMLLNQSIMLG---AADIHDRYRDMRLDVDNMTYEELLS 553

Query:   616 LGDEIGPVCTGLREEAILANLTVQRYGSESPTNNG--SCCICQEKYADGENLGKLDCGHD 673
             L + IG VCTGL EE I   L  Q+Y S + ++     CC+CQE+Y + E +G+L+CGHD
Sbjct:   554 LEERIGDVCTGLNEETISNRLKQQKYKSSTRSSQEVEPCCVCQEEYKEEEEIGRLECGHD 613

Query:   674 FHPNCIKQWLVRKNQCPICKMTGL 697
             FH  CIK+WL +KN CPICK TGL
Sbjct:   614 FHSQCIKEWLKQKNLCPICKTTGL 637

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2160031 AT5G42940 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
 Identities = 60/139 (43%), Positives = 82/139 (58%)

Query:   562 NILARVRMTGSLGLENFMV-NRSVFLGPFXXXXXXXXXXXXXXXXXXXTYEELLALGDEI 620
             +++ R     +L LE+ M+ N SV    F                   +YEELLAL + I
Sbjct:   547 DVMRRDANNNNLRLEDVMLLNHSVL---FDGATGHDRYRDMRLDVDNMSYEELLALEERI 603

Query:   621 GPVCTGLREEAILANLTVQRYGS--ESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNC 678
             G VCTG+ EE I   L  ++Y S  +SP +   CC+CQE+Y +GE++G L+CGH+FH  C
Sbjct:   604 GDVCTGVNEETISNRLKQRKYKSNTKSPQDAEPCCVCQEEYTEGEDMGTLECGHEFHSQC 663

Query:   679 IKQWLVRKNQCPICKMTGL 697
             IK+WL +KN CPICK TGL
Sbjct:   664 IKEWLKQKNLCPICKTTGL 682

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2124271 MBR2 "MED25 BINDING RING-H2 PROTEIN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 9.0e-21, Sum P(2) = 9.0e-21
 Identities = 59/155 (38%), Positives = 87/155 (56%)

Query:   548 DHPGSSIPLAFEAHNILARVRMTGSLGLENFMV-NRSVFLGPFXXXXXXXXXXXXXXXXX 606
             D+ G +  L  E   +L+ +R   +L  E++MV +  ++ G                   
Sbjct:   515 DNDGRN-RLISEIRQVLSAMRRGENLRFEDYMVFDPLIYQG---MAEMHDRHRDMRLDVD 570

Query:   607 XXTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGS---CCICQEKYADGE 663
               +YEELLALG+ IG V TGL EE IL  +   ++ S +  ++     CC+CQE+YA+G+
Sbjct:   571 NMSYEELLALGERIGDVSTGLSEEVILKVMKQHKHTSSAAGSHQDMEPCCVCQEEYAEGD 630

Query:   664 NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698
             +LG L CGH+FH  C+KQWL+ KN CPICK   L+
Sbjct:   631 DLGTLGCGHEFHTACVKQWLMLKNLCPICKTVALS 665

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2155513 AT5G67120 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 43/84 (51%), Positives = 52/84 (61%)

Query:   609 TYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKL 668
             TYEELL++ DE G   TGL EE I  NL  ++Y   S      C ICQ+K  D E + KL
Sbjct:   184 TYEELLSITDETGDERTGLSEEVIDENLIRRKYEKRSDDETKRCVICQQKLKDNEEVSKL 243

Query:   669 DCGHDFHPNCIKQWLVRKNQCPIC 692
              CGHDFH  CIK WL+  N+CP+C
Sbjct:   244 GCGHDFHFGCIKNWLMVTNKCPLC 267

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2027804 AT1G73760 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 61/182 (33%), Positives = 88/182 (48%)

Query:   515 DAAREMDNSSRGGNMRLQPRRPGFVPSDERRDGDHPGSSIPLAFEAHNILAR-VRMTGSL 573
             D      N+ R G+  L PRR     S+   D D   S +    E  +   R +R+    
Sbjct:   183 DKTNSNSNNHREGSSSLLPRRSLNQESNPYFDSD--SSFLTSRAEQTDRYHRHLRLPYPD 240

Query:   574 GLENFMVNRSVF-LGPFXXXXXXXXXXXXXXXXXXXTYEELLALGDEIGPVCTGLREEAI 632
             GL   M+ ++ F +G                     TYE+LL LG+ IG V TGL E+ I
Sbjct:   241 GLAEMMMMQNGFVMG--GVLSSFDQFRDMRLNVDNMTYEQLLELGERIGHVNTGLTEKQI 298

Query:   633 LANLT-VQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPI 691
              + L  V+    ++   +  C ICQ++Y   + +G+L CGH FH +C+ QWLVRKN CP+
Sbjct:   299 KSCLRKVKPCRQDTTVADRKCIICQDEYEAKDEVGELRCGHRFHIDCVNQWLVRKNSCPV 358

Query:   692 CK 693
             CK
Sbjct:   359 CK 360

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2030933 AT1G17970 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
 Identities = 40/85 (47%), Positives = 54/85 (63%)

Query:   609 TYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKL 668
             +YE+LL LGD IG V TGL+E  I   L   +        +  C ICQ++Y   + +G+L
Sbjct:   277 SYEQLLELGDRIGYVNTGLKESEIHRCLGKIKPSVSHTLVDRKCSICQDEYEREDEVGEL 336

Query:   669 DCGHDFHPNCIKQWLVRKNQCPICK 693
             +CGH FH +C+KQWL RKN CP+CK
Sbjct:   337 NCGHSFHVHCVKQWLSRKNACPVCK 361

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2159634 AT5G10650 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 44/93 (47%), Positives = 57/93 (61%)

Query:   609 TYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGS--------CCICQEKYA 660
             +YEELLALGD++G V T L EEA+  +L    Y     T + S        C ICQE+Y 
Sbjct:   424 SYEELLALGDKMGTVSTALSEEALSRSLKQSIYQETDETGSISLYKDDDIKCSICQEEYV 483

Query:   661 DGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
             DG+ LG + C H +H +C++QWL  KN CPICK
Sbjct:   484 DGDELGTIPCQHMYHVSCVQQWLRMKNWCPICK 516

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006914 "autophagy" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2149378 AT5G24870 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 69/216 (31%), Positives = 99/216 (45%)

Query:   505 QGDYRPLHAADAAREMDNS-----SRGGNMR--LQPRRP---GFVPSDERRDGDHPGSSI 554
             + D  P  +A+A+R   NS     S  G +R  + P  P   G   S   RD     +  
Sbjct:   305 RADLNPSRSAEASRSPLNSYSRPISSNGRLRSLMMPGSPSEAGLSRSLMNRDTFRRYNMN 364

Query:   555 PLAFEAHNILARVRMTGSLGLENFMV-NRSVFLGPFXXXXXXXXXXXXXXXXXXXTYEEL 613
              +A E    L R+     L  E   V   ++FL                      +YEEL
Sbjct:   365 GVA-EVLLALERIEQDEELTYEQLAVLETNLFLNGMSSFHDQHRDMRLDIDNM--SYEEL 421

Query:   614 LALGDEIGPVCTGLREEAILANL--TVQRYGSESPT------NNGSCCICQEKYADGENL 665
             LAL +++G V T L EEA+L +L  ++ R   ES        ++  C ICQE+Y DG+ +
Sbjct:   422 LALEEKMGTVSTALSEEALLKSLKSSIYRPNDESDDICLNKDDDVKCSICQEEYVDGDEV 481

Query:   666 GKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLARIH 701
             G L C H +H +C +QWL  KN CPICK +  ++ H
Sbjct:   482 GTLPCQHKYHVSCAQQWLRMKNWCPICKTSAESQPH 517

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2086305 AT3G15070 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
 Identities = 45/96 (46%), Positives = 56/96 (58%)

Query:   609 TYEELLALGDEIGPVCTGLREEAI---LANLTVQRYG-SESPTNN---GSCCICQEKYAD 661
             +YEELLAL D+IG V TGL  E +   L   T  R    E P+ +    SC ICQE Y +
Sbjct:   378 SYEELLALSDQIGTVKTGLSSEDVKELLKRRTSTRINLEEGPSTDLETDSCTICQENYKN 437

Query:   662 GENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697
              + +  LDC H +H  C+K+WLV KN CPICK   L
Sbjct:   438 EDKIATLDCMHKYHAECLKKWLVIKNVCPICKSEAL 473

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2009660 AT1G53190 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
 Identities = 42/100 (42%), Positives = 56/100 (56%)

Query:   609 TYEELLALGDEIGPVCTGLREEAILANLTVQRYG-------SESPTNNG----SCCICQE 657
             +YEELLAL + IG V TGL EE +  +L  +          S SP         C ICQE
Sbjct:   388 SYEELLALSERIGTVNTGLPEEDVKNHLKTRTCSGINFEKESSSPRTKDLETEPCTICQE 447

Query:   658 KYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697
              + + E +  LDCGH++H  C+++WL+ KN CPICK   L
Sbjct:   448 SFKNEEKIATLDCGHEYHAECLEKWLIVKNVCPICKSEAL 487

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050494 hypothetical protein (650 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	701
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	1e-17
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	8e-13
smart00184	40	smart00184, RING, Ring finger	5e-11
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	4e-10
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	6e-10
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	8e-10
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	1e-07
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	1e-06
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	6e-06
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	3e-05
smart00744	49	smart00744, RINGv, The RING-variant domain is a C4	5e-05
pfam00628	51	pfam00628, PHD, PHD-finger	1e-04
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	2e-04
smart00249	47	smart00249, PHD, PHD zinc finger	4e-04
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	0.001

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 76.7 bits (189), Expect = 1e-17
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
             C IC +++  GE +  L CGH FH  C+ +WL   N CP+C+
Sbjct: 1   DECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 62.8 bits (153), Expect = 8e-13
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICK 693
           C IC E++   E +  L CGH F  +CI +WL   KN CP+C+
Sbjct: 2   CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCR 42

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 57.5 bits (139), Expect = 5e-11
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPIC 692
           C IC E+Y   ++   L CGH F  +CI++WL   N  CPIC
Sbjct: 1   CPICLEEYL--KDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 55.2 bits (133), Expect = 4e-10
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
               C IC +   D   L    CGH F   CI ++L +K++CPIC+ 
Sbjct: 1   EELECPICLDLLRDPVVL--TPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 55.5 bits (134), Expect = 6e-10
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 14/54 (25%)

Query: 652 CCICQEKYAD--------GEN----LGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
           C IC+  +          G++     G+  CGH FH +CI +WL  +N CP+C+
Sbjct: 22  CAICRNHFDGTCPECKSPGDDCPVVWGE--CGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 54.0 bits (130), Expect = 8e-10
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWL-VRKNQCPIC 692
           C IC E+  D   +  L CGH F   CI  WL      CP+C
Sbjct: 1   CPICLEEPKDPVTI--LPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 649 NGSCCICQEKYADGEN----LGKLDCGHDFHPNCIKQWLVRKNQCPICKMT 695
            G+C  CQ     G+      G   C H FH +CI +WL  K  CP+ + T
Sbjct: 31  MGTCPECQFGMTPGDECPVVWGV--CNHAFHDHCIYRWLDTKGVCPLDRQT 79

Length = 88

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 14/74 (18%)

Query: 630 EAILANLTVQRYGSESPTNNGSCCICQEK--YADGENLG--------KLDCGHDFHPNCI 679
            A+    T ++  +    ++ +C IC ++  + D E L         +L CGH  H +C+
Sbjct: 272 NAMYPTATEEQLTN----SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCL 327

Query: 680 KQWLVRKNQCPICK 693
           K WL R+  CPIC+
Sbjct: 328 KNWLERQQTCPICR 341

Length = 491

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 48.8 bits (116), Expect = 6e-06
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICK 693
           C IC   +   + L  L C H FH  C+ +WL+   N+CP+C+
Sbjct: 326 CAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCR 368

Length = 374

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 12/54 (22%)

Query: 649 NGSCCICQEKYADGEN----LGKLDCGHDFHPNCIKQWLVR---KNQCPICKMT 695
           +G+C  C  K+  G++     GK  C H+FH +CI +WL     K  CP+C+ T
Sbjct: 32  DGTCPQC--KFP-GDDCPLVWGK--CKHNFHMHCILKWLATETSKGLCPMCRQT 80

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|128983 smart00744, RINGv, The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 8/49 (16%)

Query: 652 CCICQEKYADGENLGKLDCG-----HDFHPNCIKQWLVRKN--QCPICK 693
           C IC ++  +G+ L    C         H  C+++W+       C ICK
Sbjct: 2   CRICHDEGDEGDPL-VSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Classical RING domain: C-x (2) -C-x (9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C. Length = 49

>gnl|CDD|201356 pfam00628, PHD, PHD-finger

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 16/53 (30%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIK-----------QWLVRKNQCPICK 693
           C +C +   DGE L    C   FH  C+            +W      CP CK
Sbjct: 2   CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEW-----YCPECK 49

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 648 NNGSCCICQEKYADGENLGKLDCGH-DFHPNCIKQWLVRKNQCPICK 693
            +  C IC E+  +   L    CGH      C K+ L  K +CPIC+
Sbjct: 1   EDDLCVICLERPRNVVFL---PCGHLCLCEECAKR-LRSKKKCPICR 43

Length = 49

>gnl|CDD|214584 smart00249, PHD, PHD zinc finger

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 5/46 (10%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCI----KQWLVRKN-QCPIC 692
           C +C +    GE L    C   +H  C+     +        CP C
Sbjct: 2   CSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLLEEEPDGKWYCPKC 47

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the RING finger and the FYVE finger. It is not yet known if PHD fingers have a common molecular function. Several reports suggest that it can function as a protein-protein interacton domain and it was recently demonstrated that the PHD finger of p300 can cooperate with the adjacent BROMO domain in nucleosome binding in vitro. Other reports suggesting that the PHD finger is a ubiquitin ligase have been refuted as these domains were RING fingers misidentified as PHD fingers. Length = 47

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 652 CCICQEKYADGE----NLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMT 695
           C IC EK  D E      G L +C H F   CI  W   KN CP+C+  
Sbjct: 177 CAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	701
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.48
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.38
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.1
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.09
PHA02929	238	N1R/p28-like protein; Provisional	99.03
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.02
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.88
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.82
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.8
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.79
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.77
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.76
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.73
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.72
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.62
PHA02926	242	zinc finger-like protein; Provisional	98.58
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.58
PF14634	44	zf-RING_5: zinc-RING finger domain	98.53
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.53
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.51
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.5
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.49
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.33
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.26
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.2
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.15
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.14
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.13
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.12
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.09
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.06
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.02
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.01
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.97
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.95
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.92
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.91
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.54
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.54
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.38
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.34
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.16
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.1
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.08
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.05
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.98
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.96
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	96.84
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.76
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.63
KOG2660	331	consensus Locus-specific chromosome binding protei	96.62
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.6
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.59
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.41
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.25
COG5152	259	Uncharacterized conserved protein, contains RING a	96.18
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.97
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	95.96
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.72
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	95.64
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.47
PF04641	260	Rtf2: Rtf2 RING-finger	95.27
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	95.09
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	95.08
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.04
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.02
PHA03096	284	p28-like protein; Provisional	94.97
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.94
PHA02862	156	5L protein; Provisional	94.82
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.74
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	94.66
COG5222	427	Uncharacterized conserved protein, contains RING Z	94.61
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.56
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	94.41
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.99
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.84
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	93.76
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	93.31
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	92.88
KOG1940	276	consensus Zn-finger protein [General function pred	92.32
KOG1001	674	consensus Helicase-like transcription factor HLTF/	92.08
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	91.49
COG5175	480	MOT2 Transcriptional repressor [Transcription]	91.37
KOG3002	299	consensus Zn finger protein [General function pred	90.85
KOG0298	1394	consensus DEAD box-containing helicase-like transc	90.75
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	90.71
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	90.44
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	88.87
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	88.79
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	88.65
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	88.33
KOG0825	1134	consensus PHD Zn-finger protein [General function	86.65
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	86.41
KOG1609	323	consensus Protein involved in mRNA turnover and st	86.17
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	85.65
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	85.25
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	85.04
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	84.37
KOG3053	293	consensus Uncharacterized conserved protein [Funct	84.11
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	82.62
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	81.64
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	80.12

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2.2e-14  Score=152.52  Aligned_cols=69  Identities=35%  Similarity=0.833  Sum_probs=56.6

Q ss_pred             HHHHhhccccccCCCCCC-CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCC-CCCCCCCccc
Q 047787          630 EAILANLTVQRYGSESPT-NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQ-CPICKMTGLA  698 (701)
Q Consensus       630 eeIiksL~~~Kyssesse-edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnS-CPICRkeILp  698 (701)
                      +..++.++..+|...... ..+.|+||+|+|++++++++|||+|.||..||++||.+..+ ||+||+.+.+
T Consensus       209 k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  209 KRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             HHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            344577777888743332 22599999999999999999999999999999999998755 9999998765

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.38  E-value=1.3e-13  Score=105.32  Aligned_cols=44  Identities=55%  Similarity=1.287  Sum_probs=40.5

Q ss_pred             CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCC
Q 047787          650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK  693 (701)
Q Consensus       650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICR  693 (701)
                      +.|+||+++|..++.+..|+|+|.||.+||.+|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            47999999999999999999999999999999999999999997

...

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=3.9e-11  Score=125.69  Aligned_cols=50  Identities=32%  Similarity=0.910  Sum_probs=47.0

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILp  698 (701)
                      .-+|+|||++|...++++.|||.|.||..||.+|+. .++.||+||+++.+
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            468999999999999999999999999999999999 88999999999865

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.09  E-value=7.4e-11  Score=100.27  Aligned_cols=47  Identities=40%  Similarity=0.936  Sum_probs=37.7

Q ss_pred             CCCCccccccccccCC----------CceeeeCCCCcccHHHHHHHHhcCCCCCCCC
Q 047787          647 TNNGSCCICQEKYADG----------ENLGKLDCGHDFHPNCIKQWLVRKNQCPICK  693 (701)
Q Consensus       647 eedeeCpICLEEFedg----------E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICR  693 (701)
                      ..++.|+||++.|.+.          ..+...+|+|.||..||.+||+.+.+||+||
T Consensus        17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   17 IADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            3456699999999443          2344559999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.03  E-value=2e-10  Score=117.43  Aligned_cols=70  Identities=29%  Similarity=0.591  Sum_probs=50.4

Q ss_pred             HHHHHhhccccccC---CCCCCCCCccccccccccCCCc----eee-eCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          629 EEAILANLTVQRYG---SESPTNNGSCCICQEKYADGEN----LGK-LDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       629 EeeIiksL~~~Kys---sesseedeeCpICLEEFedgE~----Lr~-LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      .+.+++.++.....   ......+.+|+||++.+.+++.    +.. ++|+|.||..||.+|+..+.+||+||..+..
T Consensus       151 ~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~  228 (238)
T PHA02929        151 YKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS  228 (238)
T ss_pred             hHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence            34455555554332   1123456899999999876541    233 4899999999999999999999999997653

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=7.6e-11  Score=126.05  Aligned_cols=52  Identities=33%  Similarity=0.926  Sum_probs=43.6

Q ss_pred             CCCCCcccccccc-ccCCC---------ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          646 PTNNGSCCICQEK-YADGE---------NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       646 seedeeCpICLEE-FedgE---------~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      ...+..|.||||+ |+.+.         +..+|||||++|.+|++.|++++.+||+||.++.
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            4567899999999 55441         2358999999999999999999999999999843

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=9.6e-10  Score=114.61  Aligned_cols=51  Identities=29%  Similarity=0.737  Sum_probs=45.5

Q ss_pred             CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      .......|.||+|....+.   .+||||+||+.||..|+..+..||+||.+..+
T Consensus       235 i~~a~~kC~LCLe~~~~pS---aTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p  285 (293)
T KOG0317|consen  235 IPEATRKCSLCLENRSNPS---ATPCGHIFCWSCILEWCSEKAECPLCREKFQP  285 (293)
T ss_pred             CCCCCCceEEEecCCCCCC---cCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence            3455689999999988777   89999999999999999999999999998765

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.82  E-value=3.5e-09  Score=77.50  Aligned_cols=44  Identities=43%  Similarity=1.007  Sum_probs=36.5

Q ss_pred             ccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCc
Q 047787          651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTG  696 (701)
Q Consensus       651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeI  696 (701)
                      .|+||++.+.  +.+..++|+|.||..|++.|+.. ...||+||+.+
T Consensus         1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            5999999983  33345579999999999999997 77899999864

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.80  E-value=3.6e-09  Score=105.52  Aligned_cols=48  Identities=31%  Similarity=0.666  Sum_probs=40.3

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc----------------CCCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----------------KNQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----------------KnSCPICRkeIL  697 (701)
                      ..+..|+||++.+.++.   .++|||.||+.||.+|+..                +..||+||..+.
T Consensus        16 ~~~~~CpICld~~~dPV---vT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         16 GGDFDCNICLDQVRDPV---VTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             CCccCCccCCCcCCCcE---EcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            34678999999988775   7899999999999999862                246999999874

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.9e-09  Score=108.21  Aligned_cols=49  Identities=33%  Similarity=0.624  Sum_probs=41.6

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh---cCCCCCCCCCCcc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV---RKNQCPICKMTGL  697 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~---rKnSCPICRkeIL  697 (701)
                      ......|.||+|.-+++.   .+.|||.||+.||.+||.   .+..||+||..+-
T Consensus        44 ~~~~FdCNICLd~akdPV---vTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPV---VTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CCCceeeeeeccccCCCE---EeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            455778999999988877   789999999999999998   3456999998763

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=3.9e-09  Score=104.05  Aligned_cols=52  Identities=29%  Similarity=0.597  Sum_probs=44.2

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      .+....|+|||+.|.+... ..++|||+||..||+..|+....||+|++.|-.
T Consensus       128 ~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~  179 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH  179 (187)
T ss_pred             cccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence            3456889999999987653 357999999999999999999999999986643

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.6e-09  Score=119.41  Aligned_cols=52  Identities=35%  Similarity=0.903  Sum_probs=45.5

Q ss_pred             CCCCCccccccccccCCCc--eeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          646 PTNNGSCCICQEKYADGEN--LGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       646 seedeeCpICLEEFedgE~--Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      ...++.|+||+|++..+.+  ..+|+|+|+||..|++.|++++.+||+||..+.
T Consensus       288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence            3457899999999998754  568999999999999999999999999999543

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.73  E-value=5e-09  Score=82.34  Aligned_cols=46  Identities=39%  Similarity=0.786  Sum_probs=39.0

Q ss_pred             CCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      +..|.||++.+.+   +..+||||. ||..|+.+|+..+..||+||+++.
T Consensus         2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4689999998654   457899999 999999999999999999999874

...

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.72  E-value=7.7e-09  Score=77.69  Aligned_cols=39  Identities=36%  Similarity=0.993  Sum_probs=33.4

Q ss_pred             cccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCC
Q 047787          652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPIC  692 (701)
Q Consensus       652 CpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPIC  692 (701)
                      |+||++.+.+.  +..++|||.||..||.+|++.+..||+|
T Consensus         1 C~iC~~~~~~~--~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDP--VVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSE--EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCc--CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999998874  3478999999999999999998899998

>smart00504 Ubox Modified RING finger domain

Probab=98.62  E-value=3.2e-08  Score=79.49  Aligned_cols=44  Identities=23%  Similarity=0.370  Sum_probs=40.3

Q ss_pred             CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787          650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG  696 (701)
Q Consensus       650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI  696 (701)
                      ..|+||++.+.++.   .++|||+|++.||.+|+..+..||+|+..+
T Consensus         2 ~~Cpi~~~~~~~Pv---~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~   45 (63)
T smart00504        2 FLCPISLEVMKDPV---ILPSGQTYERRAIEKWLLSHGTDPVTGQPL   45 (63)
T ss_pred             cCCcCCCCcCCCCE---ECCCCCEEeHHHHHHHHHHCCCCCCCcCCC
Confidence            46999999998875   789999999999999999988999999876

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PHA02926 zinc finger-like protein; Provisional

Probab=98.58  E-value=3e-08  Score=100.93  Aligned_cols=51  Identities=31%  Similarity=0.722  Sum_probs=39.4

Q ss_pred             CCCCccccccccccCC-----Cceeee-CCCCcccHHHHHHHHhcC------CCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADG-----ENLGKL-DCGHDFHPNCIKQWLVRK------NQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedg-----E~Lr~L-PCGHiFH~dCI~qWL~rK------nSCPICRkeIL  697 (701)
                      ..+.+|+||+|...+.     ...+.| +|+|.||..||++|...+      ..||+||....
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            4568899999987443     123455 899999999999999853      45999998653

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.58  E-value=2.6e-08  Score=77.02  Aligned_cols=38  Identities=34%  Similarity=0.887  Sum_probs=30.6

Q ss_pred             cccccccccCCCceeeeCCCCcccHHHHHHHHhcC----CCCCCC
Q 047787          652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK----NQCPIC  692 (701)
Q Consensus       652 CpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK----nSCPIC  692 (701)
                      |+||++.|.++.   .|+|||.||..||..|++..    ..||+|
T Consensus         1 CpiC~~~~~~Pv---~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPV---SLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEE---E-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCcc---ccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999998   89999999999999999843    369998

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.53  E-value=5.8e-08  Score=74.96  Aligned_cols=44  Identities=36%  Similarity=0.846  Sum_probs=38.4

Q ss_pred             ccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 047787          651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM  694 (701)
Q Consensus       651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRk  694 (701)
                      .|.||++.|.+......|+|||+||..||..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999966666778899999999999999866678999985

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.53  E-value=5.3e-08  Score=86.33  Aligned_cols=51  Identities=35%  Similarity=0.789  Sum_probs=39.9

Q ss_pred             CCCCccccccccccCCC----------ceeeeCCCCcccHHHHHHHHhc---CCCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADGE----------NLGKLDCGHDFHPNCIKQWLVR---KNQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedgE----------~Lr~LPCGHiFH~dCI~qWL~r---KnSCPICRkeIL  697 (701)
                      ..++.|.||+..|...-          .+..-.|+|.||..||.+||..   +..||+||++..
T Consensus        19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            34889999999997421          2333379999999999999994   467999999754

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.51  E-value=6.1e-08  Score=105.61  Aligned_cols=49  Identities=24%  Similarity=0.665  Sum_probs=43.3

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      .....|+||++.|..+.   .++|+|.||..||..||.....||+||..+..
T Consensus        24 e~~l~C~IC~d~~~~Pv---itpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        24 DTSLRCHICKDFFDVPV---LTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             ccccCCCcCchhhhCcc---CCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence            45678999999998776   78999999999999999988899999997643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00184 RING Ring finger

Probab=98.50  E-value=9.1e-08  Score=67.64  Aligned_cols=38  Identities=47%  Similarity=1.145  Sum_probs=32.5

Q ss_pred             cccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCC
Q 047787          652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPIC  692 (701)
Q Consensus       652 CpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPIC  692 (701)
                      |+||++..   .....++|+|.||..||+.|+. ....||+|
T Consensus         1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            88999983   3455889999999999999998 66779998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.49  E-value=6.2e-08  Score=72.61  Aligned_cols=39  Identities=41%  Similarity=1.080  Sum_probs=34.1

Q ss_pred             cccccccccCCCceeeeCCCCcccHHHHHHHHh--cCCCCCCC
Q 047787          652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLV--RKNQCPIC  692 (701)
Q Consensus       652 CpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~--rKnSCPIC  692 (701)
                      |+||++.+....  ..++|+|.||..||.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999987765  5679999999999999999  55569998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=2.3e-07  Score=96.20  Aligned_cols=50  Identities=26%  Similarity=0.667  Sum_probs=43.9

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHH-HHhcCCC-CCCCCCCcccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQ-WLVRKNQ-CPICKMTGLAR  699 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~q-WL~rKnS-CPICRkeILpt  699 (701)
                      ..+..|.||++......   .++|||+||..||.. |-.++.. ||+||....++
T Consensus       213 ~~d~kC~lC~e~~~~ps---~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk  264 (271)
T COG5574         213 LADYKCFLCLEEPEVPS---CTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK  264 (271)
T ss_pred             ccccceeeeecccCCcc---cccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence            56889999999987776   899999999999999 8887776 99999987764

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=4.5e-07  Score=100.71  Aligned_cols=47  Identities=34%  Similarity=0.627  Sum_probs=40.3

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC-----CCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK-----NQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK-----nSCPICRkeILp  698 (701)
                      +..|+||++....+.   .+.|||+||..||.++|...     ..||+|+..+..
T Consensus       186 ~~~CPICL~~~~~p~---~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPV---RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCccc---ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            788999999987776   66799999999999999844     359999998765

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=5.4e-07  Score=85.66  Aligned_cols=45  Identities=29%  Similarity=0.716  Sum_probs=39.7

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM  694 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRk  694 (701)
                      .+...|+||++.|..+   ..|+|+|.||..||..|+.....||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            4567899999999999   48899999999999999996667999994

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=5.7e-07  Score=93.82  Aligned_cols=52  Identities=33%  Similarity=0.754  Sum_probs=44.2

Q ss_pred             CCCCCccccccccccCCC-------ceeeeCCCCcccHHHHHHHHh--cCCCCCCCCCCcc
Q 047787          646 PTNNGSCCICQEKYADGE-------NLGKLDCGHDFHPNCIKQWLV--RKNQCPICKMTGL  697 (701)
Q Consensus       646 seedeeCpICLEEFedgE-------~Lr~LPCGHiFH~dCI~qWL~--rKnSCPICRkeIL  697 (701)
                      ...+..|+||-..+...+       ++.+|.|+|+||..||+-|..  +|.+||.||..+.
T Consensus       221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            456788999998886665       678999999999999999986  7889999998764

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.14  E-value=7.6e-07  Score=95.19  Aligned_cols=47  Identities=34%  Similarity=0.632  Sum_probs=42.8

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      .-..|-||.|.|..+.   ++||+|.||.-||+.+|..+..||.|+.++-
T Consensus        22 ~lLRC~IC~eyf~ip~---itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~   68 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIPM---ITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT   68 (442)
T ss_pred             HHHHHhHHHHHhcCce---eccccchHHHHHHHHHhccCCCCCceecccc
Confidence            4467999999999987   8899999999999999999999999998764

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.13  E-value=1.8e-06  Score=76.22  Aligned_cols=53  Identities=28%  Similarity=0.592  Sum_probs=40.2

Q ss_pred             CCCCCCccccccccccCC-----------Cc--eeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          645 SPTNNGSCCICQEKYADG-----------EN--LGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       645 sseedeeCpICLEEFedg-----------E~--Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      .+...+.|.||...|.+.           ++  +..-.|.|.||..||.+||..++.||+||++..
T Consensus        16 wdi~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          16 WDIPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             cccccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence            344467888888777542           21  222369999999999999999999999998753

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=7.5e-07  Score=81.74  Aligned_cols=54  Identities=30%  Similarity=0.603  Sum_probs=41.7

Q ss_pred             CCCCCCCCccccccccccC-------------CC-ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787          643 SESPTNNGSCCICQEKYAD-------------GE-NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG  696 (701)
Q Consensus       643 sesseedeeCpICLEEFed-------------gE-~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI  696 (701)
                      ...+...+.|+||...+.+             .+ .+.--.|.|.||..||.+||+.++.||+|.++-
T Consensus        40 WaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   40 WAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             eeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            4566778899999866543             11 122227999999999999999999999998864

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.4e-06  Score=96.67  Aligned_cols=52  Identities=27%  Similarity=0.601  Sum_probs=40.6

Q ss_pred             CCCCccccccccccCCCc--------------eeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADGEN--------------LGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedgE~--------------Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILp  698 (701)
                      .....|+|||.++..-..              ...+||.|+||..|+.+|+. .|-.||+||.++.+
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            345689999988754211              12349999999999999999 67799999998764

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.06  E-value=2.6e-06  Score=66.78  Aligned_cols=38  Identities=37%  Similarity=0.870  Sum_probs=22.9

Q ss_pred             cccccccccCCCc-eeeeCCCCcccHHHHHHHHhcC----CCCC
Q 047787          652 CCICQEKYADGEN-LGKLDCGHDFHPNCIKQWLVRK----NQCP  690 (701)
Q Consensus       652 CpICLEEFedgE~-Lr~LPCGHiFH~dCI~qWL~rK----nSCP  690 (701)
                      |+||.| |...+. -..|+|||+||++||.+|+...    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 866443 3578999999999999999843    3576

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.02  E-value=2.6e-06  Score=72.32  Aligned_cols=48  Identities=23%  Similarity=0.366  Sum_probs=38.5

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCccc
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGLA  698 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeILp  698 (701)
                      +...|+||.+-+.++.   +++|||+|.+.||.+||.. ...||+|+..+..
T Consensus         3 ~~f~CpIt~~lM~dPV---i~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    3 DEFLCPITGELMRDPV---ILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGGB-TTTSSB-SSEE---EETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             cccCCcCcCcHhhCce---eCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            3567999999999998   8999999999999999998 8899999987654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=1.6e-06  Score=75.94  Aligned_cols=52  Identities=35%  Similarity=0.742  Sum_probs=39.9

Q ss_pred             CCCCCCccccccccccCCCceeee----------CCCCcccHHHHHHHHhc---CCCCCCCCCCc
Q 047787          645 SPTNNGSCCICQEKYADGENLGKL----------DCGHDFHPNCIKQWLVR---KNQCPICKMTG  696 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~L----------PCGHiFH~dCI~qWL~r---KnSCPICRkeI  696 (701)
                      ....++.|.||...|...-.-.++          -|.|.||..||.+||..   +..||+||++.
T Consensus        16 W~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   16 WDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             EcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            345667999999999764322223          49999999999999984   34699999875

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.97  E-value=1.9e-06  Score=100.71  Aligned_cols=53  Identities=23%  Similarity=0.669  Sum_probs=40.3

Q ss_pred             CCCCCCCccccccccccCCC----ceeeeCCCCcccHHHHHHHHhc--CCCCCCCCCCc
Q 047787          644 ESPTNNGSCCICQEKYADGE----NLGKLDCGHDFHPNCIKQWLVR--KNQCPICKMTG  696 (701)
Q Consensus       644 esseedeeCpICLEEFedgE----~Lr~LPCGHiFH~dCI~qWL~r--KnSCPICRkeI  696 (701)
                      ......++|+||+..+..-+    .-++-.|.|.||..||.+|++.  ++.||+||.++
T Consensus      1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219        1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred             hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence            44567899999998875222    1123359999999999999994  56799999875

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.95  E-value=3.7e-06  Score=88.64  Aligned_cols=46  Identities=28%  Similarity=0.655  Sum_probs=41.7

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCC
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMT  695 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRke  695 (701)
                      +....|-||-+.|..+.   .++|||.||.-||+..|..+..||+||.+
T Consensus        23 Ds~lrC~IC~~~i~ip~---~TtCgHtFCslCIR~hL~~qp~CP~Cr~~   68 (391)
T COG5432          23 DSMLRCRICDCRISIPC---ETTCGHTFCSLCIRRHLGTQPFCPVCRED   68 (391)
T ss_pred             hhHHHhhhhhheeecce---ecccccchhHHHHHHHhcCCCCCcccccc
Confidence            34567999999998887   78999999999999999999999999985

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.92  E-value=8.4e-06  Score=65.19  Aligned_cols=42  Identities=29%  Similarity=0.763  Sum_probs=32.6

Q ss_pred             ccccccccccCCCceeeeCCC-----CcccHHHHHHHHhcC--CCCCCCC
Q 047787          651 SCCICQEKYADGENLGKLDCG-----HDFHPNCIKQWLVRK--NQCPICK  693 (701)
Q Consensus       651 eCpICLEEFedgE~Lr~LPCG-----HiFH~dCI~qWL~rK--nSCPICR  693 (701)
                      .|.||++.. +++....+||.     |.+|..|+.+|+..+  .+||+|+
T Consensus         1 ~CrIC~~~~-~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEG-DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCC-CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            489999943 34444477985     899999999999744  4899996

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.91  E-value=2.5e-06  Score=72.53  Aligned_cols=51  Identities=25%  Similarity=0.688  Sum_probs=24.6

Q ss_pred             CCccccccccccCCCceeee-----CCCCcccHHHHHHHHhc---C--------CCCCCCCCCcccc
Q 047787          649 NGSCCICQEKYADGENLGKL-----DCGHDFHPNCIKQWLVR---K--------NQCPICKMTGLAR  699 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~L-----PCGHiFH~dCI~qWL~r---K--------nSCPICRkeILpt  699 (701)
                      +..|.||+..+.+...+-.+     .|++.||..||.+||..   .        ..||.|+++|.-+
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~   68 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS   68 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence            46799999987633322111     69999999999999982   1        1399999987543

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=1.7e-05  Score=85.36  Aligned_cols=51  Identities=27%  Similarity=0.574  Sum_probs=43.5

Q ss_pred             CCCCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI  700 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILptL  700 (701)
                      +..++|.|||.+..+-.   .|||-|. .|..|.+...-+.+.||+||+.+...|
T Consensus       288 ~~gkeCVIClse~rdt~---vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll  339 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTV---VLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELL  339 (349)
T ss_pred             cCCCeeEEEecCCcceE---EecchhhehhHhHHHHHHHhhcCCCccccchHhhh
Confidence            44678999999865544   8999997 899999998889999999999987754

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.54  E-value=1.8e-05  Score=91.61  Aligned_cols=52  Identities=17%  Similarity=0.345  Sum_probs=45.5

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      .....|+||+..|.+.......+|+|+||..||..|-+.-.+||+||+++..
T Consensus       121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            3457899999999888766677999999999999999999999999997654

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=3.6e-05  Score=83.03  Aligned_cols=50  Identities=32%  Similarity=0.923  Sum_probs=39.6

Q ss_pred             CCCCccccccccccCCC----ceeee-CCCCcccHHHHHHHHh--c-----CCCCCCCCCCc
Q 047787          647 TNNGSCCICQEKYADGE----NLGKL-DCGHDFHPNCIKQWLV--R-----KNQCPICKMTG  696 (701)
Q Consensus       647 eedeeCpICLEEFedgE----~Lr~L-PCGHiFH~dCI~qWL~--r-----KnSCPICRkeI  696 (701)
                      ..+..|.|||+...+..    ..++| +|.|.||..||+.|-.  +     ...||.||...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            45788999999987654    23455 5999999999999984  4     46799999854

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=2.6e-05  Score=84.01  Aligned_cols=51  Identities=25%  Similarity=0.501  Sum_probs=41.1

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCcccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLAR  699 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILpt  699 (701)
                      .....|+||++-++..-  ....|.|.||.+||..-|+ ..+.||.||+.+.++
T Consensus        41 ~~~v~c~icl~llk~tm--ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKTM--TTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             hhhhccHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence            34578999999876543  2337999999999999988 567899999988764

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=6.9e-05  Score=86.75  Aligned_cols=47  Identities=28%  Similarity=0.682  Sum_probs=40.3

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILp  698 (701)
                      ...|+.|-.-+.+..   ++.|+|.||..||..-+. +...||.|.+.+-+
T Consensus       643 ~LkCs~Cn~R~Kd~v---I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDAV---ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             ceeCCCccCchhhHH---HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            468999998877666   789999999999999998 77889999886544

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.16  E-value=0.00011  Score=78.15  Aligned_cols=55  Identities=27%  Similarity=0.670  Sum_probs=45.9

Q ss_pred             CCCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-----------------------CCCCCCCCCCcc
Q 047787          643 SESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-----------------------KNQCPICKMTGL  697 (701)
Q Consensus       643 sesseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-----------------------KnSCPICRkeIL  697 (701)
                      .+.......|.||+.-|.+++.+.+++|-|.||..|+-++|..                       +..||+||..|.
T Consensus       109 T~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  109 TENNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             ccCCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            4555677899999999999999999999999999999888751                       125999998764

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.10  E-value=0.00011  Score=62.67  Aligned_cols=45  Identities=24%  Similarity=0.621  Sum_probs=23.6

Q ss_pred             CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ..|.+|.+.+.++.  ....|.|+||..||..-+.  ..||+|+.++-.
T Consensus         8 LrCs~C~~~l~~pv--~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~   52 (65)
T PF14835_consen    8 LRCSICFDILKEPV--CLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI   52 (65)
T ss_dssp             TS-SSS-S--SS-B-----SSS--B-TTTGGGGTT--TB-SSS--B-S-
T ss_pred             cCCcHHHHHhcCCc--eeccCccHHHHHHhHHhcC--CCCCCcCChHHH
Confidence            56999999988876  2248999999999988554  349999998643

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.00018  Score=60.08  Aligned_cols=47  Identities=28%  Similarity=0.528  Sum_probs=37.6

Q ss_pred             CCccccccccccCCCceeeeCCCCc-ccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLV-RKNQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~-rKnSCPICRkeILp  698 (701)
                      .++|.||+|...+..   .-.|||. .|.+|-.+.++ .+..||+||.++..
T Consensus         7 ~dECTICye~pvdsV---lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d   55 (62)
T KOG4172|consen    7 SDECTICYEHPVDSV---LYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD   55 (62)
T ss_pred             ccceeeeccCcchHH---HHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence            378999999866654   4489997 89999776666 78899999998643

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.00037  Score=76.68  Aligned_cols=48  Identities=25%  Similarity=0.712  Sum_probs=43.1

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      ..+..|.||+..+..+.   .+||||.||..||.+-|.+...||.||..+.
T Consensus        82 ~sef~c~vc~~~l~~pv---~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPV---VTPCGHSFCLECLDRSLDQETECPLCRDELV  129 (398)
T ss_pred             cchhhhhhhHhhcCCCc---cccccccccHHHHHHHhccCCCCcccccccc
Confidence            55788999999998887   7799999999999998888889999999875

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=96.98  E-value=0.0003  Score=77.96  Aligned_cols=49  Identities=27%  Similarity=0.798  Sum_probs=38.6

Q ss_pred             CCCCccccccccccCCCc-eeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADGEN-LGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedgE~-Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      .+.-+|+||+|-+..... +..+.|.|.||-.|+..|.  ..+||+||....
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence            445689999999866542 3455899999999999994  457999998655

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.96  E-value=0.00046  Score=83.89  Aligned_cols=53  Identities=30%  Similarity=0.590  Sum_probs=43.0

Q ss_pred             CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC----------CCCCCCCCcc
Q 047787          645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN----------QCPICKMTGL  697 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn----------SCPICRkeIL  697 (701)
                      ..+.++.|.||+-+--.......|.|+|+||..|.+.-|+...          .||+|+.++.
T Consensus      3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            4566789999998876666677899999999999998887543          5999998763

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.00022  Score=75.67  Aligned_cols=43  Identities=35%  Similarity=0.716  Sum_probs=35.0

Q ss_pred             CCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ...|.|||+...+..   .|+|||. -|.+|-+..    +.|||||+.+..
T Consensus       300 ~~LC~ICmDaP~DCv---fLeCGHmVtCt~CGkrm----~eCPICRqyi~r  343 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCV---FLECGHMVTCTKCGKRM----NECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHhcCCcceE---EeecCcEEeehhhcccc----ccCchHHHHHHH
Confidence            678999999877766   8999995 688887554    589999987654

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.00096  Score=72.46  Aligned_cols=50  Identities=26%  Similarity=0.489  Sum_probs=42.9

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ..++..|+||+..-....   ..||+|.-|+.||.+.|+..+.|=.||+++..
T Consensus       419 ~sEd~lCpICyA~pi~Av---f~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  419 DSEDNLCPICYAGPINAV---FAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             CcccccCcceecccchhh---ccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            467889999987654444   78999999999999999999999999998764

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.63  E-value=0.0009  Score=73.21  Aligned_cols=51  Identities=27%  Similarity=0.604  Sum_probs=43.8

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ...+..|+||+..+.++...  +.|||.||..||..|+..+..||.|+..+..
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~   68 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQ   68 (391)
T ss_pred             CcccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccch
Confidence            35568899999999988722  5999999999999999999999999887643

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.62  E-value=0.00053  Score=73.59  Aligned_cols=51  Identities=24%  Similarity=0.574  Sum_probs=43.4

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLAR  699 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILpt  699 (701)
                      .....|.+|...|.+...  +..|-|.||+.||...|...+.||.|...+..+
T Consensus        13 n~~itC~LC~GYliDATT--I~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATT--ITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             ccceehhhccceeecchh--HHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            456789999999988762  348999999999999999999999999876543

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.60  E-value=0.00077  Score=74.05  Aligned_cols=47  Identities=26%  Similarity=0.658  Sum_probs=37.6

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhc--CCCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR--KNQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r--KnSCPICRkeILp  698 (701)
                      -+.|-||-|.   ..++.+-||||..|..|+-.|-..  ..+||.||.+|-.
T Consensus       369 FeLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  369 FELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            3579999886   234556799999999999999853  5689999998754

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.0018  Score=68.45  Aligned_cols=51  Identities=24%  Similarity=0.425  Sum_probs=41.2

Q ss_pred             CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh--cCCCCCCCCCCcc
Q 047787          645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV--RKNQCPICKMTGL  697 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~--rKnSCPICRkeIL  697 (701)
                      ....+.+|++|.+..+.+.  ...+|+|+||..||..-+.  -..+||.|..++.
T Consensus       235 ~~t~~~~C~~Cg~~PtiP~--~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  235 TGTSDTECPVCGEPPTIPH--VIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cccCCceeeccCCCCCCCe--eeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            3455789999999988776  2457999999999998776  3468999988765

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.41  E-value=0.0011  Score=72.87  Aligned_cols=46  Identities=33%  Similarity=0.719  Sum_probs=38.3

Q ss_pred             CCccccccccccCC-CceeeeCCCCcccHHHHHHHHhcC--CCCCCCCC
Q 047787          649 NGSCCICQEKYADG-ENLGKLDCGHDFHPNCIKQWLVRK--NQCPICKM  694 (701)
Q Consensus       649 deeCpICLEEFedg-E~Lr~LPCGHiFH~dCI~qWL~rK--nSCPICRk  694 (701)
                      ...|..|-|.|-.. +.+-.|||.|+||..|+.+.|.++  .+||.||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            45799999988654 457788999999999999999855  46999994

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.25  E-value=0.0017  Score=53.69  Aligned_cols=42  Identities=29%  Similarity=0.639  Sum_probs=28.5

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc--CCCCCC
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR--KNQCPI  691 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r--KnSCPI  691 (701)
                      ....|+|.+..|+++.  ....|+|+|-++.|.+||..  ...||+
T Consensus        10 ~~~~CPiT~~~~~~PV--~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPV--KSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSEE--EESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCCc--CcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            3578999999998775  45699999999999999943  445998

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.18  E-value=0.0019  Score=65.89  Aligned_cols=47  Identities=23%  Similarity=0.602  Sum_probs=41.4

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ...|.||.++|+.+.   .+.|||.||..|...-+.....|-+|-+....
T Consensus       196 PF~C~iCKkdy~spv---vt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G  242 (259)
T COG5152         196 PFLCGICKKDYESPV---VTECGHSFCSLCAIRKYQKGDECGVCGKATYG  242 (259)
T ss_pred             ceeehhchhhccchh---hhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence            357999999999988   78999999999999988888999999876543

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.0046  Score=68.33  Aligned_cols=47  Identities=30%  Similarity=0.578  Sum_probs=39.3

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhc--------CCCCCCCCCC
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR--------KNQCPICKMT  695 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r--------KnSCPICRke  695 (701)
                      ...|.||+++....+....|||+|+||+.|++.++..        .-.||-|+..
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            4679999999988788889999999999999999972        2358877653

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.0061  Score=63.20  Aligned_cols=52  Identities=31%  Similarity=0.659  Sum_probs=43.2

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc--------CCCCCCCCCCccccC
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR--------KNQCPICKMTGLARI  700 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r--------KnSCPICRkeILptL  700 (701)
                      -.-.|..|--.+..++.+ +|.|-|.||.+|+.+|-..        ...||.|..+|++.+
T Consensus        49 Y~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~  108 (299)
T KOG3970|consen   49 YNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI  108 (299)
T ss_pred             CCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence            346799999999988854 7899999999999999872        235999999998864

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.0037  Score=66.62  Aligned_cols=48  Identities=21%  Similarity=0.478  Sum_probs=42.3

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLAR  699 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILpt  699 (701)
                      ...|-||..+|..+.   .+.|+|.||..|...-+.....|.+|-+.+...
T Consensus       241 Pf~c~icr~~f~~pV---vt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~  288 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPV---VTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS  288 (313)
T ss_pred             Cccccccccccccch---hhcCCceeehhhhccccccCCcceecccccccc
Confidence            456999999999998   889999999999999888889999998876543

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.64  E-value=0.0037  Score=74.09  Aligned_cols=39  Identities=23%  Similarity=0.491  Sum_probs=30.6

Q ss_pred             CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh
Q 047787          645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV  684 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~  684 (701)
                      ..+..+.|.+|...+-.. .....||||.||++||.+-..
T Consensus       813 v~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  813 VLEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             EecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHHH
Confidence            446678999999887655 344569999999999988755

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.47  E-value=0.0063  Score=69.06  Aligned_cols=49  Identities=24%  Similarity=0.634  Sum_probs=38.7

Q ss_pred             CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh-----cCCCCCCCCCCc
Q 047787          645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-----RKNQCPICKMTG  696 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-----rKnSCPICRkeI  696 (701)
                      .......|-+|.+.-++..   ...|.|.||+-||++++.     ..-+||+|-..+
T Consensus       532 enk~~~~C~lc~d~aed~i---~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L  585 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAEDYI---ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL  585 (791)
T ss_pred             cccCceeecccCChhhhhH---hhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence            3445678999999866554   678999999999999987     234799998754

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.27  E-value=0.018  Score=59.65  Aligned_cols=51  Identities=18%  Similarity=0.445  Sum_probs=41.3

Q ss_pred             CCCCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          646 PTNNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      ......|||+..+|........| +|||+|...||++. .....||+|-.++.
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFT  161 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccc
Confidence            45667899999999766666666 99999999999997 33567999988754

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.09  E-value=0.0016  Score=71.40  Aligned_cols=50  Identities=28%  Similarity=0.609  Sum_probs=44.1

Q ss_pred             CCCccccccccccCC-CceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          648 NNGSCCICQEKYADG-ENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       648 edeeCpICLEEFedg-E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      -...|.||.+.|+.. +++..+-|||.||.+||.+||..+..||.|+.++.
T Consensus       195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~  245 (465)
T KOG0827|consen  195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP  245 (465)
T ss_pred             HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence            356899999999887 66777899999999999999999999999998764

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.08  E-value=0.0073  Score=60.06  Aligned_cols=30  Identities=30%  Similarity=0.784  Sum_probs=27.6

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccH
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHP  676 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~  676 (701)
                      ++..+|.||+|++..++.+.+|||-.+||+
T Consensus       175 ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  175 DDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            456789999999999999999999999996

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.04  E-value=0.018  Score=60.55  Aligned_cols=50  Identities=12%  Similarity=0.258  Sum_probs=44.0

Q ss_pred             CCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          648 NNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      ....|+||.+.+........| ||||+|+.+|+.+.+.....||+|-.++-
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk  270 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK  270 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence            346799999999988877777 99999999999999999999999987754

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.02  E-value=0.012  Score=64.11  Aligned_cols=47  Identities=21%  Similarity=0.475  Sum_probs=34.3

Q ss_pred             CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      .......|.||.++.....   .+||||.-|  |..-- +.-.+||+||..+-
T Consensus       301 ~~~~p~lcVVcl~e~~~~~---fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDEPKSAV---FVPCGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             ccCCCCceEEecCCcccee---eecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            3455678999999987755   889999866  65433 23345999998764

>PHA03096 p28-like protein; Provisional

Probab=94.97  E-value=0.013  Score=62.30  Aligned_cols=44  Identities=30%  Similarity=0.580  Sum_probs=32.5

Q ss_pred             CccccccccccCCC----ceeee-CCCCcccHHHHHHHHhcC---CCCCCCC
Q 047787          650 GSCCICQEKYADGE----NLGKL-DCGHDFHPNCIKQWLVRK---NQCPICK  693 (701)
Q Consensus       650 eeCpICLEEFedgE----~Lr~L-PCGHiFH~dCI~qWL~rK---nSCPICR  693 (701)
                      ..|.||++......    ..+.| .|.|.||..||+.|...+   .+||.||
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~  230 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR  230 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence            67999999886542    34456 799999999999998732   3454444

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.94  E-value=0.01  Score=51.96  Aligned_cols=33  Identities=30%  Similarity=0.728  Sum_probs=27.2

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHH
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIK  680 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~  680 (701)
                      .....|.+|...+... .....||||+||..|++
T Consensus        76 ~~~~~C~vC~k~l~~~-~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGNS-VFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCCc-eEEEeCCCeEEeccccc
Confidence            4567799999998774 45567999999999985

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PHA02862 5L protein; Provisional

Probab=94.82  E-value=0.021  Score=55.91  Aligned_cols=46  Identities=24%  Similarity=0.657  Sum_probs=32.6

Q ss_pred             CCccccccccccCCCceeeeCC---CCcccHHHHHHHHh--cCCCCCCCCCCc
Q 047787          649 NGSCCICQEKYADGENLGKLDC---GHDFHPNCIKQWLV--RKNQCPICKMTG  696 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPC---GHiFH~dCI~qWL~--rKnSCPICRkeI  696 (701)
                      .+.|-||+++-.+.  +.--.|   -..-|.+|+.+|+.  ++..|++||.+.
T Consensus         2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY   52 (156)
T PHA02862          2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY   52 (156)
T ss_pred             CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence            46799999985332  211122   24689999999998  556799999875

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.74  E-value=0.03  Score=55.42  Aligned_cols=47  Identities=23%  Similarity=0.661  Sum_probs=34.5

Q ss_pred             CCCCCccccccccccCCCceeeeCCCC-----cccHHHHHHHHhcC--CCCCCCCCCc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGH-----DFHPNCIKQWLVRK--NQCPICKMTG  696 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGH-----iFH~dCI~qWL~rK--nSCPICRkeI  696 (701)
                      ...+..|-||+++..  +.  .-||..     .-|.+|+.+|+..+  ..|++|+++.
T Consensus         5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y   58 (162)
T PHA02825          5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY   58 (162)
T ss_pred             CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence            456778999998843  22  246654     45999999999844  4699999864

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=94.66  E-value=0.014  Score=56.28  Aligned_cols=37  Identities=22%  Similarity=0.519  Sum_probs=29.8

Q ss_pred             CCCccccccccccCCCceeeeCCC------CcccHHHHHHHHh
Q 047787          648 NNGSCCICQEKYADGENLGKLDCG------HDFHPNCIKQWLV  684 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCG------HiFH~dCI~qWL~  684 (701)
                      ..-+|.||++.+....-+..++|+      |.||.+|+++|-.
T Consensus        25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            357899999999884555666776      8899999999943

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.61  E-value=0.031  Score=60.08  Aligned_cols=43  Identities=30%  Similarity=0.648  Sum_probs=34.9

Q ss_pred             CCccccccccccCCCceeee-CCCCcccHHHHHHHHh-cCCCCCCCCC
Q 047787          649 NGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLV-RKNQCPICKM  694 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~-rKnSCPICRk  694 (701)
                      ...|+.|..-+..+.   .+ -|+|.||.+||..-|. ....||.|-.
T Consensus       274 ~LkCplc~~Llrnp~---kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         274 SLKCPLCHCLLRNPM---KTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             cccCcchhhhhhCcc---cCccccchHHHHHHhhhhhhccccCCCccc
Confidence            378999998877776   44 4899999999998887 5567999954

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.56  E-value=0.025  Score=61.84  Aligned_cols=52  Identities=21%  Similarity=0.574  Sum_probs=40.3

Q ss_pred             CCCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHH--hcCCCCCCCCCCcc
Q 047787          643 SESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWL--VRKNQCPICKMTGL  697 (701)
Q Consensus       643 sesseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL--~rKnSCPICRkeIL  697 (701)
                      .+.+++...|.||-+.+.-.   ..+||+|..|--|-.+.-  -.+..||+||++..
T Consensus        55 ddtDEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          55 DDTDEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             cccccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            34566777899999876543   378999999999986643  37788999999754

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=94.41  E-value=0.025  Score=45.09  Aligned_cols=40  Identities=33%  Similarity=0.835  Sum_probs=27.2

Q ss_pred             cccccccccCCCceeeeCCCC-----cccHHHHHHHHh--cCCCCCCC
Q 047787          652 CCICQEKYADGENLGKLDCGH-----DFHPNCIKQWLV--RKNQCPIC  692 (701)
Q Consensus       652 CpICLEEFedgE~Lr~LPCGH-----iFH~dCI~qWL~--rKnSCPIC  692 (701)
                      |-||++...+...+ +.||.-     ..|..||.+|+.  .+..|++|
T Consensus         1 CrIC~~~~~~~~~l-i~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPL-ISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-E-E-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCce-ecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            78999987766622 457653     689999999998  44679988

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=93.99  E-value=0.036  Score=45.10  Aligned_cols=44  Identities=23%  Similarity=0.671  Sum_probs=23.0

Q ss_pred             cccccccccCCC-ceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCC
Q 047787          652 CCICQEKYADGE-NLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMT  695 (701)
Q Consensus       652 CpICLEEFedgE-~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRke  695 (701)
                      |++|.+++...+ .+.--+|++.+|..|...-+. ....||-||++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~   46 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP   46 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence            899999994433 232337899999999988886 57789999986

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.84  E-value=0.035  Score=65.92  Aligned_cols=45  Identities=22%  Similarity=0.608  Sum_probs=35.2

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG  696 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI  696 (701)
                      .....|.+|--.+..+.  ....|||.||..|+.   .....||.|+.++
T Consensus       838 ~q~skCs~C~~~LdlP~--VhF~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  838 FQVSKCSACEGTLDLPF--VHFLCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeeeeecccCCccccce--eeeecccHHHHHhhc---cCcccCCccchhh
Confidence            34578999988876664  466899999999987   4556799999743

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.76  E-value=0.041  Score=55.64  Aligned_cols=52  Identities=31%  Similarity=0.781  Sum_probs=37.1

Q ss_pred             CCCCCccccccccccCCC---ce-eeeCCCCcccHHHHHHHHhc-----C------CCCCCCCCCcc
Q 047787          646 PTNNGSCCICQEKYADGE---NL-GKLDCGHDFHPNCIKQWLVR-----K------NQCPICKMTGL  697 (701)
Q Consensus       646 seedeeCpICLEEFedgE---~L-r~LPCGHiFH~dCI~qWL~r-----K------nSCPICRkeIL  697 (701)
                      ++....|.||+.+--++.   .+ --..||.-||.-|+..||+.     .      ..||.|-.++.
T Consensus       162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia  228 (234)
T KOG3268|consen  162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA  228 (234)
T ss_pred             chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence            445567999987655543   11 12379999999999999982     1      14999998764

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=93.31  E-value=0.065  Score=63.59  Aligned_cols=50  Identities=24%  Similarity=0.625  Sum_probs=38.1

Q ss_pred             CCCCCccccccccccCCCceeeeCCCC-----cccHHHHHHHHh--cCCCCCCCCCCc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGH-----DFHPNCIKQWLV--RKNQCPICKMTG  696 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGH-----iFH~dCI~qWL~--rKnSCPICRkeI  696 (701)
                      .+++..|-||..+=..++.+ .-||..     ..|.+|+.+|+.  .+..|-+|+.+.
T Consensus         9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~   65 (1175)
T COG5183           9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY   65 (1175)
T ss_pred             CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence            45568999999887776633 227764     489999999999  455699998765

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=92.88  E-value=0.066  Score=63.77  Aligned_cols=47  Identities=34%  Similarity=0.735  Sum_probs=35.6

Q ss_pred             CCCccccccccccCCCcee-eeCCCCcccHHHHHHHHhcC-------CCCCCCCC
Q 047787          648 NNGSCCICQEKYADGENLG-KLDCGHDFHPNCIKQWLVRK-------NQCPICKM  694 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr-~LPCGHiFH~dCI~qWL~rK-------nSCPICRk  694 (701)
                      ...+|.||++.+.....+- .-.|-|+||..||+.|-...       ..||.|..
T Consensus       190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            4567999999987765332 22588999999999998732       23999984

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=92.32  E-value=0.072  Score=56.68  Aligned_cols=45  Identities=33%  Similarity=0.750  Sum_probs=38.6

Q ss_pred             CccccccccccCCC-ceeeeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 047787          650 GSCCICQEKYADGE-NLGKLDCGHDFHPNCIKQWLVRKNQCPICKM  694 (701)
Q Consensus       650 eeCpICLEEFedgE-~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRk  694 (701)
                      ..|+||.+.+.... .+..++|||..|..|+.+.....-.||+|.+
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            34999999987765 4567799999999999999887788999988

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=92.08  E-value=0.066  Score=62.88  Aligned_cols=43  Identities=30%  Similarity=0.778  Sum_probs=34.4

Q ss_pred             CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC--CCCCCCCCc
Q 047787          650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN--QCPICKMTG  696 (701)
Q Consensus       650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn--SCPICRkeI  696 (701)
                      ..|.||++ .   +.....+|+|.||..|+..-+....  .||+||..+
T Consensus       455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l  499 (674)
T KOG1001|consen  455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL  499 (674)
T ss_pred             cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence            78999999 3   3334789999999999999887432  599999754

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=91.49  E-value=0.17  Score=55.03  Aligned_cols=49  Identities=24%  Similarity=0.516  Sum_probs=39.9

Q ss_pred             CCCCCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787          645 SPTNNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTG  696 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeI  696 (701)
                      ...+...|+||+.....+.   .| --|-+||..||...+...+.||+-..++
T Consensus       296 l~~~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  296 LPPDREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             CCCccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            3455678999999877765   34 5699999999999999999999976554

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=91.37  E-value=0.12  Score=56.47  Aligned_cols=49  Identities=18%  Similarity=0.425  Sum_probs=34.5

Q ss_pred             CCCCccccccccccCCCce-eeeCCCCcccHHHHHHHHh-cCCCCCCCCCC
Q 047787          647 TNNGSCCICQEKYADGENL-GKLDCGHDFHPNCIKQWLV-RKNQCPICKMT  695 (701)
Q Consensus       647 eedeeCpICLEEFedgE~L-r~LPCGHiFH~dCI~qWL~-rKnSCPICRke  695 (701)
                      ++++.|+.|+|++...++- .-.+||-..|.-|...--. ....||-||..
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~   62 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRK   62 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhh
Confidence            4455699999999877643 2348898777777654433 34569999974

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=90.85  E-value=0.14  Score=54.95  Aligned_cols=45  Identities=22%  Similarity=0.507  Sum_probs=36.6

Q ss_pred             CCCCCccccccccccCCCceeeeCC--CCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDC--GHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPC--GHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      ..+..+|+||.+.+..+.    ..|  ||+-|..|-.   +.++.||.||.++-
T Consensus        45 ~~~lleCPvC~~~l~~Pi----~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPI----FQCDNGHLACSSCRT---KVSNKCPTCRLPIG   91 (299)
T ss_pred             chhhccCchhhccCcccc----eecCCCcEehhhhhh---hhcccCCccccccc
Confidence            345678999999998885    777  7999999975   45788999998864

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=90.75  E-value=0.083  Score=65.24  Aligned_cols=43  Identities=35%  Similarity=0.794  Sum_probs=37.4

Q ss_pred             CCcccccccccc-CCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 047787          649 NGSCCICQEKYA-DGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM  694 (701)
Q Consensus       649 deeCpICLEEFe-dgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRk  694 (701)
                      ...|.||.+... .+-   +..|||.||..|+..|+..+..||+|+.
T Consensus      1153 ~~~c~ic~dil~~~~~---I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGG---IAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred             ccchHHHHHHHHhcCC---eeeechhHhhhHHHHHHHHhccCcchhh
Confidence            348999999887 333   6789999999999999999999999984

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.71  E-value=0.093  Score=43.01  Aligned_cols=35  Identities=31%  Similarity=0.716  Sum_probs=24.6

Q ss_pred             eeCCC-CcccHHHHHHHHhcCCCCCCCCCCccccCC
Q 047787          667 KLDCG-HDFHPNCIKQWLVRKNQCPICKMTGLARIH  701 (701)
Q Consensus       667 ~LPCG-HiFH~dCI~qWL~rKnSCPICRkeILptLh  701 (701)
                      ...|. |..|..|+...|.....||+|+.++..+|+
T Consensus        15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir   50 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR   50 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred             eeeecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence            45786 999999999999999999999999988774

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=90.44  E-value=0.14  Score=42.99  Aligned_cols=46  Identities=30%  Similarity=0.573  Sum_probs=33.7

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ....|..|...-..+.   .+||||+.|..|..-  ++-+-||+|-+++..
T Consensus         6 ~~~~~~~~~~~~~~~~---~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~   51 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGT---VLPCGHLICDNCFPG--ERYNGCPFCGTPFEF   51 (55)
T ss_pred             cceeEEEccccccccc---cccccceeeccccCh--hhccCCCCCCCcccC
Confidence            3456777776544444   789999999999754  366779999987754

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=88.87  E-value=0.47  Score=47.26  Aligned_cols=36  Identities=28%  Similarity=0.426  Sum_probs=24.1

Q ss_pred             CCccccccccccCCCceeee---------CCCC-cccHHHHHHHHh
Q 047787          649 NGSCCICQEKYADGENLGKL---------DCGH-DFHPNCIKQWLV  684 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~L---------PCGH-iFH~dCI~qWL~  684 (701)
                      +..|+||||.....+.+...         -|+- .-|..||+++-+
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            56799999987776622211         1332 258899999866

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=88.79  E-value=0.17  Score=54.82  Aligned_cols=45  Identities=20%  Similarity=0.363  Sum_probs=29.7

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      .-.|.-|--.  ....-+.+||+|+||.+|.+.  ...+.||.|-..++
T Consensus        90 VHfCd~Cd~P--I~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   90 VHFCDRCDFP--IAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ  134 (389)
T ss_pred             eEeecccCCc--ceeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence            3456556333  333345679999999999743  34568999976553

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=88.65  E-value=0.22  Score=39.28  Aligned_cols=41  Identities=29%  Similarity=0.872  Sum_probs=24.3

Q ss_pred             cccccccccCCCceeeeCCCCcccHHHHHHHHhcCC--CCCCC
Q 047787          652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN--QCPIC  692 (701)
Q Consensus       652 CpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn--SCPIC  692 (701)
                      |.+|.+-...++.-....|+=.+|..|+..++....  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            778888887777322235998999999999998655  69988

; PDB: 3NW0_A 2CT0_A.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.33  E-value=0.17  Score=58.97  Aligned_cols=44  Identities=25%  Similarity=0.529  Sum_probs=32.5

Q ss_pred             CCccccccccccCCC-ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCC
Q 047787          649 NGSCCICQEKYADGE-NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMT  695 (701)
Q Consensus       649 deeCpICLEEFedgE-~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRke  695 (701)
                      ...|.||+..|.... .-+.|.|||+.|..|+...  .+.+|| |++.
T Consensus        11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D   55 (861)
T KOG3161|consen   11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD   55 (861)
T ss_pred             HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence            357999988886654 3346789999999999764  345688 7654

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=86.65  E-value=0.36  Score=57.50  Aligned_cols=51  Identities=12%  Similarity=0.198  Sum_probs=37.6

Q ss_pred             CCCCccccccccccCCC-ceeeeC---CCCcccHHHHHHHHh------cCCCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADGE-NLGKLD---CGHDFHPNCIKQWLV------RKNQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedgE-~Lr~LP---CGHiFH~dCI~qWL~------rKnSCPICRkeIL  697 (701)
                      .+...|.||.-++..++ ....+|   |+|.||..||..|+.      .+-.|++|+..+.
T Consensus        94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~  154 (1134)
T KOG0825|consen   94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG  154 (1134)
T ss_pred             ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence            34567888888887743 344555   999999999999987      2345899987654

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.41  E-value=0.49  Score=52.59  Aligned_cols=49  Identities=22%  Similarity=0.415  Sum_probs=39.7

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhc---CCCCCCCCCCcc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR---KNQCPICKMTGL  697 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r---KnSCPICRkeIL  697 (701)
                      ...|||=.+.-.+...-..|.|||+.+++-|.+.-+.   +..||.|=.+..
T Consensus       334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~  385 (394)
T KOG2817|consen  334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQL  385 (394)
T ss_pred             eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence            4579998888877777779999999999999998773   357999965543

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=86.17  E-value=0.41  Score=49.28  Aligned_cols=49  Identities=27%  Similarity=0.622  Sum_probs=36.0

Q ss_pred             CCccccccccccCCCc-eeeeCCC-----CcccHHHHHHHHh--cCCCCCCCCCCcc
Q 047787          649 NGSCCICQEKYADGEN-LGKLDCG-----HDFHPNCIKQWLV--RKNQCPICKMTGL  697 (701)
Q Consensus       649 deeCpICLEEFedgE~-Lr~LPCG-----HiFH~dCI~qWL~--rKnSCPICRkeIL  697 (701)
                      ...|-||.++...... .-..||.     +..|..|+..|+.  .+..|.+|.....
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~  134 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI  134 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence            5789999998765432 2244775     4589999999999  5556999988543

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=85.65  E-value=0.68  Score=45.12  Aligned_cols=47  Identities=28%  Similarity=0.518  Sum_probs=38.4

Q ss_pred             CCCccccccccccCCCceeee-C---CCCcccHHHHHHHHhc---CCCCCCCCCCcc
Q 047787          648 NNGSCCICQEKYADGENLGKL-D---CGHDFHPNCIKQWLVR---KNQCPICKMTGL  697 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~L-P---CGHiFH~dCI~qWL~r---KnSCPICRkeIL  697 (701)
                      ...+|-||.|.-.+..   .| |   ||-..|..|.-..++.   ...||+||+..-
T Consensus        79 ~lYeCnIC~etS~ee~---FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK  132 (140)
T PF05290_consen   79 KLYECNICKETSAEER---FLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK  132 (140)
T ss_pred             CceeccCcccccchhh---cCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence            6789999999877766   55 2   8999999999998884   456999998754

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=85.25  E-value=0.39  Score=50.75  Aligned_cols=47  Identities=23%  Similarity=0.592  Sum_probs=36.1

Q ss_pred             CCCccccccccccCCCceeee--C-CCCcccHHHHHHHHhcC-CCCC--CCCC
Q 047787          648 NNGSCCICQEKYADGENLGKL--D-CGHDFHPNCIKQWLVRK-NQCP--ICKM  694 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~L--P-CGHiFH~dCI~qWL~rK-nSCP--ICRk  694 (701)
                      .+..|+||..+....-.+..|  | |-|..|..|+++-+... ..||  -|.+
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence            356899999886665555555  5 99999999999999854 4699  6643

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.04  E-value=0.37  Score=53.19  Aligned_cols=40  Identities=30%  Similarity=0.659  Sum_probs=30.3

Q ss_pred             CCCCccccccccccCC-CceeeeCCCCcccHHHHHHHHhcC
Q 047787          647 TNNGSCCICQEKYADG-ENLGKLDCGHDFHPNCIKQWLVRK  686 (701)
Q Consensus       647 eedeeCpICLEEFedg-E~Lr~LPCGHiFH~dCI~qWL~rK  686 (701)
                      .....|.||+.++... +....+.|+|.||.+|+++.+..+
T Consensus       144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~  184 (384)
T KOG1812|consen  144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK  184 (384)
T ss_pred             cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence            3467899999554444 444456899999999999998844

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=84.37  E-value=0.59  Score=55.65  Aligned_cols=25  Identities=32%  Similarity=0.813  Sum_probs=22.8

Q ss_pred             eeCCCCcccHHHHHHHHhcCCCCCC
Q 047787          667 KLDCGHDFHPNCIKQWLVRKNQCPI  691 (701)
Q Consensus       667 ~LPCGHiFH~dCI~qWL~rKnSCPI  691 (701)
                      +..|+|+.|..|.++|+.....||.
T Consensus      1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hccccccccHHHHHHHHhcCCcCCC
Confidence            4579999999999999999999985

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.11  E-value=0.51  Score=50.23  Aligned_cols=52  Identities=23%  Similarity=0.569  Sum_probs=36.1

Q ss_pred             CCCCCccccccccccCCCceee-eCCC-----CcccHHHHHHHHhcCC--------CCCCCCCCcc
Q 047787          646 PTNNGSCCICQEKYADGENLGK-LDCG-----HDFHPNCIKQWLVRKN--------QCPICKMTGL  697 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~-LPCG-----HiFH~dCI~qWL~rKn--------SCPICRkeIL  697 (701)
                      .+.+..|=||+..-++.-.... -||-     |..|..||..|+..|.        +||.|+++..
T Consensus        17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi   82 (293)
T KOG3053|consen   17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI   82 (293)
T ss_pred             cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence            4456678899987544431111 1663     7899999999997543        4999999754

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=82.62  E-value=1.3  Score=49.08  Aligned_cols=27  Identities=26%  Similarity=0.813  Sum_probs=21.1

Q ss_pred             CCCcccHHHHHHHHhc-------------CCCCCCCCCCc
Q 047787          670 CGHDFHPNCIKQWLVR-------------KNQCPICKMTG  696 (701)
Q Consensus       670 CGHiFH~dCI~qWL~r-------------KnSCPICRkeI  696 (701)
                      |--.+|.+|+-+|+..             +-.||+||++.
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F  350 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF  350 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence            5567899999999873             23599999863

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=81.64  E-value=0.38  Score=56.65  Aligned_cols=45  Identities=31%  Similarity=0.614  Sum_probs=37.6

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC---CCCCCCCCc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN---QCPICKMTG  696 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn---SCPICRkeI  696 (701)
                      ..+|+||...|.++.   .+.|-|.||..|+..-|..++   .||+|+..+
T Consensus        21 ~lEc~ic~~~~~~p~---~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~   68 (684)
T KOG4362|consen   21 ILECPICLEHVKEPS---LLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI   68 (684)
T ss_pred             hccCCceeEEeeccc---hhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence            467999999999884   789999999999988777554   599999643

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.12  E-value=0.75  Score=47.08  Aligned_cols=42  Identities=26%  Similarity=0.595  Sum_probs=30.9

Q ss_pred             cccccccccCCCceeeeCCCC-cccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787          652 CCICQEKYADGENLGKLDCGH-DFHPNCIKQWLVRKNQCPICKMTGLARI  700 (701)
Q Consensus       652 CpICLEEFedgE~Lr~LPCGH-iFH~dCI~qWL~rKnSCPICRkeILptL  700 (701)
                      |-+|-+.   ...+..|||-| .+|..|=..    ...||+|+.......
T Consensus       161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s~~  203 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTSSV  203 (207)
T ss_pred             ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhcee
Confidence            8888775   44566779997 489999543    456999998776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	701
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		1e-06
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		1e-06
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-05
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		9e-05
4ayc_B	138	Rnf8 Ring Domain Structure Length = 138		9e-05
4ayc_A	138	Rnf8 Ring Domain Structure Length = 138		9e-05
4epo_C	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		9e-05
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		1e-04

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
           C IC     +GE++ +L C H FH  C+ QWL+   +CPIC++
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 59

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 642 GSESPTNNG-SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
           G+E    +G  C +C+E YA GE++ +L C H FH +CI  WL + + CP+C+
Sbjct: 7   GTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 652 CCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVRKNQCPICKMT 695
           C +C  +  DGE    L  CGH FH  C+  WL   + CP+C++T
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
           C +C E +   + LG   C H FH  C+ +WL  +  CP+C M
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM 60

>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
           N   C IC E + +   L   +C H F   CI +W+ RK +CPIC+
Sbjct: 52  NELQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 94

>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
           N   C IC E + +   L   +C H F   CI +W+ RK +CPIC+
Sbjct: 52  NELQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 94

>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
           N   C IC E + +   L   +C H F   CI +W+ RK +CPIC+
Sbjct: 63  NELQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 105

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 652 CC-ICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
           CC IC  +Y  G+   +L C H FH  C+  WL +   CP+C+
Sbjct: 42  CCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	701
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	4e-20
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	8e-18
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	8e-18
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	2e-16
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-16
2ect_A	78	Ring finger protein 126; metal binding protein, st	3e-16
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	4e-16
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	8e-16
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	2e-15
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-15
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	9e-15
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	4e-13
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	5e-13
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-11
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	4e-06
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	4e-10
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	8e-10
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-09
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	1e-09
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	1e-09
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-09
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	7e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	9e-09
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-08
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-06
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	4e-06
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	7e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	1e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	2e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-05
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	2e-05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	4e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	4e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	6e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	7e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	9e-05
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	2e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	2e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	3e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	3e-04
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	4e-04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	5e-04
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	5e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	6e-04

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 84.0 bits (208), Expect = 4e-20
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 644 ESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
           +    +  C +C E +   + LG   C H FH  C+ +WL  +  CP+C M
Sbjct: 10  KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM 60

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 77.4 bits (191), Expect = 8e-18
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 631 AILANLTVQRYGSESPTNNGS-CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQC 689
                L   R+   +  +  + C +C   +   + L  L C H+FH  C+ +WL     C
Sbjct: 4   GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTC 63

Query: 690 PICK 693
           PIC+
Sbjct: 64  PICR 67

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 77.0 bits (190), Expect = 8e-18
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 643 SESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
                    C IC     +GE++ +L C H FH  C+ QWL+   +CPIC+
Sbjct: 8   GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 630 EAILANLTVQRYGSE--SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN 687
           +  +  L       +  +      C IC  +Y  G+   +L C H FH  C+  WL +  
Sbjct: 19  KESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG 78

Query: 688 QCPICK 693
            CP+C+
Sbjct: 79  TCPVCR 84

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 73.0 bits (179), Expect = 2e-16
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 643 SESPTNNGSCCICQEKYADGENLGK----LDCGHDFHPNCIKQWLVRKNQCPICK 693
              P+   SC IC + Y++    G+     +CGH F   C++  L   N CP C+
Sbjct: 9   GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 642 GSESPTNNGSCC-ICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
           G+E    +G  C +C+E YA GE++ +L C H FH +CI  WL + + CP+C+
Sbjct: 7   GTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 72.2 bits (177), Expect = 4e-16
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 643 SESPTNNGSCCICQEKYADGENLGK----LDCGHDFHPNCIKQWLVRKNQCPICK 693
              P+   SC IC + Y++    G+     +CGH F   C++  L   N CP C+
Sbjct: 4   GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 71.3 bits (175), Expect = 8e-16
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
           C IC E  ++      L C H F   CI +W+ +   CP+CK+
Sbjct: 8   CPICLEDPSNYSMA--LPCLHAFCYVCITRWIRQNPTCPLCKV 48

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 646 PTNNGSCCICQEKYADGENLGK-LDCGHDFHPNCIKQWLVRKNQCPICK 693
            + +  C IC E       +   L CGH  H  C ++ L    +CP+C 
Sbjct: 2   SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 70.1 bits (172), Expect = 2e-15
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
           CCIC +  AD      L C H F   CI +W  R   CPIC++
Sbjct: 18  CCICMDGRADLI----LPCAHSFCQKCIDKWSDRHRNCPICRL 56

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 68.3 bits (167), Expect = 9e-15
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 651 SCCICQEKYADGENLGK----LDCGHDFHPNCIKQWLVRKNQCPICK 693
           SC IC + Y++    G+     +CGH F   C++  L   N CP C+
Sbjct: 5   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 64.5 bits (157), Expect = 4e-13
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 649 NGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPIC 692
             +C  CQ +    + +    +C H FH  C+  W+ + N+CP+C
Sbjct: 26  MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 63.0 bits (154), Expect = 5e-13
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 652 CCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICK 693
           C +C  +  DGE    L  CGH FH  C+  WL   + CP+C+
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 61.0 bits (147), Expect = 2e-11
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 651 SCCICQEKYADGENLGK----LDCGHDFHPNCIKQWLVRKNQCPICKMT 695
           SC IC + Y++    G+     +CGH F   C++  L   N CP C+  
Sbjct: 9   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 57

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 652 CCICQEKYADGENLGK----LDCGHDFHPNCIKQWLVRKNQCPICK 693
           C IC + Y++    G+     +CGH F   C++  L   N CP C+
Sbjct: 75  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
           C IC+    D   +   +C H F  +CI +     N+CP C +
Sbjct: 18  CSICKGYLIDATTI--TECLHTFCKSCIVRHFYYSNRCPKCNI 58

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 57.0 bits (137), Expect = 8e-10
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 590 EEEDEEDELEDMRLDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNN 649
           E     +EL   + D + +   +   L           +E+       V  + ++   N 
Sbjct: 10  EHWALMEELNRSKKDFEAIIQAKNKELEQTKEE-----KEKMQAQKEEVLSHMNDVLENE 64

Query: 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
             C IC E + +   L   +C H F   CI +W+ RK +CPIC+
Sbjct: 65  LQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 105

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICK 693
            C IC EK  D        C      +CI++WL   + QCP C+
Sbjct: 24  RCFICMEKLRDARLC--PHCSKLCCFSCIRRWLTEQRAQCPHCR 65

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 15/56 (26%)

Query: 652 CCICQEKYA---------------DGENLGKLDCGHDFHPNCIKQWLVRKNQCPIC 692
           C IC+                   +   +    C H FH +CI +WL  +  CP+ 
Sbjct: 51  CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 55.2 bits (132), Expect = 1e-09
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 19/90 (21%)

Query: 622 PVCTGLREEAILANLTVQRYGSES----PTNNGSCCICQEKYA---------------DG 662
              +G    A      V+++ + +         +C IC+                   + 
Sbjct: 6   DTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEE 65

Query: 663 ENLGKLDCGHDFHPNCIKQWLVRKNQCPIC 692
             +    C H FH +CI +WL  +  CP+ 
Sbjct: 66  CTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
            C IC++ + +        C H F  +C  +      +C IC 
Sbjct: 17  RCFICRQAFQNPV---VTKCRHYFCESCALEHFRATPRCYICD 56

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 51.9 bits (124), Expect = 7e-09
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQ--CPICK 693
            C IC      G++     CG   H  C+ ++     +  CP C 
Sbjct: 17  ICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCN 59

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.8 bits (124), Expect = 9e-09
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
            C IC +          L C H F   C+K       +C +C+
Sbjct: 17  ECAICLQTCVHPV---SLPCKHVFCYLCVKGASWLGKRCALCR 56

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
           C +C   + D   +  ++C H F   CI ++L     CPIC +
Sbjct: 18  CVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPICDV 58

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMT 695
            C IC E +     +    C H++   CI+++L  K QCP C +T
Sbjct: 24  RCGICFEYFNIAMII--PQCSHNYCSLCIRKFLSYKTQCPTCCVT 66

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 21/78 (26%)

Query: 637 TVQRYGSESPTN-NGSCCICQEKYADGENLGKLD---------------CGHDFHPNCIK 680
            +++Y  E        C IC EK A       +                C H FH  C+ 
Sbjct: 12  VIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLL 71

Query: 681 QWLVRKN-----QCPICK 693
                 N     QCP CK
Sbjct: 72  AMYCNGNKDGSLQCPSCK 89

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 643 SESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQ-CPICK 693
            E  +    C IC E   D +      CGH    +C+  W   + Q CP C+
Sbjct: 326 CEMGSTFQLCKICAENDKDVK---IEPCGHLMCTSCLTSWQESEGQGCPFCR 374

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 28/128 (21%)

Query: 585 FLGPFEEEDEEDELEDMRL---DIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRY 641
            +GP EE      +    L   D +   ++ LL + D              + + +    
Sbjct: 250 IIGPTEEVARLRHVLSDGLSNWDSEMNIHKNLLRMFDLC---------YFPMPDWSDGPK 300

Query: 642 GSESPTNNGSCCICQEKYADGENLGK-----LDCGHDFHPNCIKQWL-----------VR 685
             E       C IC     DG  +         C    H  C+++W            V 
Sbjct: 301 LDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVS 360

Query: 686 KNQCPICK 693
             QCP CK
Sbjct: 361 FGQCPFCK 368

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMT 695
            C  C     +   LG   C H F  NC+   +     CP+C   
Sbjct: 24  RCSRCTNILREPVCLG--GCEHIFCSNCVSDCI--GTGCPVCYTP 64

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 642 GSESPTNNGSCCICQEKYADGENLGKLDCG-----HDFHPNCIKQWLV--RKNQCPICK 693
            S +P++   C IC  +  D   L    C      H  H  C++QW+       C +CK
Sbjct: 8   TSITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 65

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWL-VRKNQCPICK 693
            C  CQE            C H+   +C+ +    +   CP C+
Sbjct: 54  QCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACR 94

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQ-CPICK 693
            C IC     +     +  CGH F   CI + +      CP+  
Sbjct: 20  ECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDN 60

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 644 ESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICK 693
           ++  +   C  C       +   + +CGH F  +C+   L   + +C  C+
Sbjct: 10  KTVEDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQ 57

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 8/58 (13%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWL--------VRKNQCPICKMTGLARIH 701
           C +C  +Y   +      C   F   C+KQ++             CP         + 
Sbjct: 8   CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ 65

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWL-VRKNQCPICK 693
           SC IC+   AD     +  C H F   CI + L V  + CP C+
Sbjct: 25  SCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCR 65

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 651 SCCICQEKYADGENLGK-LDCGHDFHPNCIKQWLVRKN---QCPICK 693
            C IC E + + +   K L CGH     C+++ L       +CP C 
Sbjct: 17  ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCS 63

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICK 693
            C IC E   +      L C H     C +  + + +  CP C+
Sbjct: 17  QCGICMEILVEPV---TLPCNHTLCKPCFQSTVEKASLCCPFCR 57

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 44.0 bits (103), Expect = 7e-05
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQ--CPICK 693
           P     C IC      G++     CG   H  C+ ++     +  CP C 
Sbjct: 177 PDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCN 224

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN--QCPICKMTGLAR 699
            C IC++   D   +    CG+ +   CI+  L+  +   CP C    ++ 
Sbjct: 15  LCLICKDIMTDAVVIP--CCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 63

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 644 ESPTNNGSCCICQEKYADGENLGKLDCGHDFH-PNCIKQWLVRKNQCPIC 692
           +       C +C+++  DG N+     GH     +C ++       CPIC
Sbjct: 2   DCQNLLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAGASCPIC 50

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 55/365 (15%), Positives = 111/365 (30%), Gaps = 102/365 (27%)

Query: 335 EIFERNIRVRRNPNLQDFTPAA------RALTQSSPSQTAMFYPFDHFLNSLPQPQFHPT 388
           + F  N   +   ++QD   +         +  S  + +     F   L+   +      
Sbjct: 27  DAFVDNFDCK---DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-QEEMVQ-- 80

Query: 389 PAPQFVREP---------EPFQTQQVQGITMPSGSPSSSAYTPQLQPRNVMFRAAQ-FEP 438
              +FV E           P +T+Q Q    PS    +  Y  Q   R+ ++   Q F  
Sbjct: 81  ---KFVEEVLRINYKFLMSPIKTEQRQ----PSMM--TRMYIEQ---RDRLYNDNQVFAK 128

Query: 439 GSSSHMAANMNLANG------NPNV-----PGN-----AAAAA----TQDGSNSRISAVP 478
            + S +   + L           NV      G+     A         Q   + +I    
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI---- 184

Query: 479 FWYPRQAINYSNR--------MLEVL-RRAESRGLQGDYRPLHAADAAREMDNSSRGGNM 529
           FW     +N  N         ML+ L  + +        R  H+++    + +S +    
Sbjct: 185 FW-----LNLKNCNSPETVLEMLQKLLYQIDPNWTS---RSDHSSNIKLRI-HSIQAELR 235

Query: 530 RLQPRRPGFVPS----DERRDGDHPGSSIPLAFEAHNILARVRM-TGSLGLENFMVNRS- 583
           RL   +P +          ++           + A N+  ++ + T    + +F+   + 
Sbjct: 236 RLLKSKP-YENCLLVLLNVQNAKA--------WNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 584 --VFLGPFEEEDEEDELEDMRLDIDDMTYEELLALGDEIGPVCTGLREEAILANL----- 636
             + L         DE++ + L   D   ++L        P    +    I  ++     
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI----IAESIRDGLA 342

Query: 637 TVQRY 641
           T   +
Sbjct: 343 TWDNW 347

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 643 SESPTNNGSCCICQEKY-ADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICK 693
            ++  +   C +C E    D  N     CG+     C  +    +N  CP C+
Sbjct: 5   PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 57

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 643 SESPTNNGSCCICQEKYADGENLGKLDCGHDFH-PNCIKQWLVRKNQCPIC 692
           S        C ICQ +  +G  +     GH      C K+   R   CP+C
Sbjct: 2   SLPLNAIEPCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKKRNKPCPVC 51

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 12/51 (23%)

Query: 651 SCCICQEKYAD---GENLGKLDCGHDFHPNCIKQWLVRKN---QCPICKMT 695
            C IC E   +           C H F   C+ + L +K    QCP+CK  
Sbjct: 23  ECPICLELIKEPVS------TKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 644 ESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQ-CPICK 693
               +   C IC     +     +  CGH F   CI + +      CP+  
Sbjct: 13  PPLESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDN 60

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWL-VRKNQCPICK 693
            C  CQE           +C H+   +C+++    +   CP C+
Sbjct: 80  MCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACR 120

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
            C  CQ +    +    L C H     C++       QCPIC+
Sbjct: 8   RCQQCQAEAKCPK---LLPCLHTLCSGCLEA---SGMQCPICQ 44

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQW---LVRKNQCPIC 692
           SC +C E   +      ++CGH+F   CI +W   L R   CP+C
Sbjct: 17  SCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQ--CPICK 693
            C IC++   D   +    CG+ +   CI+  L+  ++  CP C 
Sbjct: 17  LCLICKDIMTDAVVI--PCCGNSYCDECIRTALLESDEHTCPTCH 59

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 648 NNGSCCICQ-EKYADGENLGKLD-CGHDFHPNCIKQWLVRK-NQCPICK 693
           ++  C  C+  KY +      ++ CGH    +C+    VR    CP C 
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECG 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	701
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.55
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.49
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.45
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.43
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.4
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.39
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.36
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.31
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.31
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.29
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.28
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.23
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.22
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.21
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.2
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.19
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.18
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.18
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.15
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.14
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.13
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.13
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.13
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.12
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.11
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.1
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.09
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.09
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.07
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.05
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.03
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.02
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.01
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.01
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.97
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.96
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.93
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.91
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.91
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.89
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.88
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.88
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.86
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.82
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.81
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.79
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.78
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.76
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.74
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.71
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.71
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.71
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.7
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.69
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.65
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.65
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.57
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.54
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.53
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.48
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.45
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.39
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.3
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.29
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.27
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.25
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.2
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.46
3nw0_A	238	Non-structural maintenance of chromosomes element	97.37
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	93.71
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.09
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	90.06
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	86.03
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	80.66

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.55  E-value=5.3e-15  Score=126.48  Aligned_cols=76  Identities=25%  Similarity=0.544  Sum_probs=62.6

Q ss_pred             CCCCCHHHHHhhccccccCC--CCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787          624 CTGLREEAILANLTVQRYGS--ESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLARI  700 (701)
Q Consensus       624 stGLSEeeIiksL~~~Kyss--esseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILptL  700 (701)
                      ..+++++.+ +.|+..++..  ........|+||+++|..++.+..|+|+|.||..||.+||..+.+||+||+.+.+.|
T Consensus        14 ~~~~s~~~i-~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~l   91 (91)
T 2l0b_A           14 NPPASKESI-DALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL   91 (91)
T ss_dssp             CCCCCHHHH-HTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSCCC
T ss_pred             CCCCCHHHH-HhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCCCC
Confidence            456666665 6677776653  234567789999999999988889999999999999999999999999999987654

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1e-14  Score=119.56  Aligned_cols=65  Identities=26%  Similarity=0.748  Sum_probs=54.5

Q ss_pred             hhccccccC-CCCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          634 ANLTVQRYG-SESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       634 ksL~~~Kys-sesseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      +.++..++. .....+...|+||+++|..++.+..|+|+|.||..||.+||..+..||+||+.+.+
T Consensus         7 ~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A            7 GQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             hhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            345555555 23345678899999999999888899999999999999999999999999998765

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.45  E-value=6.7e-14  Score=112.55  Aligned_cols=56  Identities=34%  Similarity=0.870  Sum_probs=49.6

Q ss_pred             CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787          645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLARI  700 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILptL  700 (701)
                      .......|+||++.|..++.+..|+|+|.||..||.+|+..+.+||+||+.+...+
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            34556789999999998888889999999999999999999999999999887653

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=9.6e-14  Score=113.03  Aligned_cols=54  Identities=31%  Similarity=0.811  Sum_probs=48.8

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLAR  699 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILpt  699 (701)
                      ......|+||+++|..++.+..|+|+|.||..||.+|+..+..||+||+.+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence            345678999999999999888899999999999999999999999999988653

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.40  E-value=1.1e-13  Score=106.60  Aligned_cols=51  Identities=35%  Similarity=0.966  Sum_probs=46.4

Q ss_pred             CCCCccccccccccCCCceeeeC-CCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LP-CGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      ++...|+||+++|..++.+..++ |+|.||..||.+|+..+.+||+||+++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            45678999999999988888887 9999999999999999999999999864

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.39  E-value=1.6e-13  Score=112.74  Aligned_cols=53  Identities=36%  Similarity=0.871  Sum_probs=48.1

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ......|+||++.|..++.+..|+|+|.||..||.+|+..+..||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            34567899999999999888889999999999999999999999999998764

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.36  E-value=7.3e-13  Score=115.95  Aligned_cols=50  Identities=32%  Similarity=0.525  Sum_probs=41.3

Q ss_pred             CCCccccccccccCCC---------------ceeeeCCCCcccHHHHHHHHh-----cCCCCCCCCCCcc
Q 047787          648 NNGSCCICQEKYADGE---------------NLGKLDCGHDFHPNCIKQWLV-----RKNQCPICKMTGL  697 (701)
Q Consensus       648 edeeCpICLEEFedgE---------------~Lr~LPCGHiFH~dCI~qWL~-----rKnSCPICRkeIL  697 (701)
                      .++.|+||+++|..+.               .+..++|+|.||..||.+||.     .+.+||+||+.+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            4578999999997754               334679999999999999994     5678999998764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.1e-12  Score=110.31  Aligned_cols=53  Identities=26%  Similarity=0.788  Sum_probs=43.1

Q ss_pred             CCCCCccccccccccC-----------CCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYAD-----------GENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFed-----------gE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      +.+++.|+||+++|.+           ++.+..+ +|+|.||..||.+||..+.+||+||+++..
T Consensus        12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            4567778888888865           3445556 599999999999999999999999998653

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.31  E-value=1.3e-12  Score=100.38  Aligned_cols=51  Identities=27%  Similarity=0.632  Sum_probs=44.1

Q ss_pred             CCCCccccccccccCCC-ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADGE-NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedgE-~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      .....|+||++.|.+.+ .+..++|+|.||..||.+|+..+..||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            35678999999997643 4667899999999999999999999999999864

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=1.2e-12  Score=103.95  Aligned_cols=53  Identities=30%  Similarity=0.696  Sum_probs=45.3

Q ss_pred             CCCCCccccccccccCC----CceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADG----ENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedg----E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ..+...|+||++.|.+.    ..+..++|||.||..||.+|+..+..||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            35578899999999865    334678999999999999999999999999998754

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.28  E-value=1.4e-12  Score=104.75  Aligned_cols=53  Identities=30%  Similarity=0.696  Sum_probs=45.5

Q ss_pred             CCCCCccccccccccCC----CceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADG----ENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedg----E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ..+...|+||++.|.+.    ..+..++|||.||..||.+|+..+..||+||+.+..
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            34567899999999764    445678999999999999999999999999998764

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.23  E-value=3.5e-12  Score=100.00  Aligned_cols=51  Identities=29%  Similarity=0.641  Sum_probs=44.0

Q ss_pred             CCCccccccccccCC----CceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          648 NNGSCCICQEKYADG----ENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       648 edeeCpICLEEFedg----E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      +...|+||++.|.+.    ..+..++|||.||..||.+|+..+..||+||+.+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence            357899999999764    345678999999999999999999999999998754

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.22  E-value=6e-12  Score=112.31  Aligned_cols=51  Identities=27%  Similarity=0.593  Sum_probs=44.1

Q ss_pred             CCCCCccccccccccCCC---------------ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787          646 PTNNGSCCICQEKYADGE---------------NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG  696 (701)
Q Consensus       646 seedeeCpICLEEFedgE---------------~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI  696 (701)
                      +..++.|+||++.|....               .+..++|+|.||..||.+||..+.+||+||+++
T Consensus        34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~   99 (106)
T 3dpl_R           34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW   99 (106)
T ss_dssp             SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred             CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence            456789999999998652               256689999999999999999999999999984

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=3.6e-12  Score=103.61  Aligned_cols=50  Identities=22%  Similarity=0.435  Sum_probs=43.7

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ..+...|+||++.|.+..   .++|||.||..||.+|+..+..||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPV---SLPCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEE---EETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCE---EccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            345678999999987664   78999999999999999999999999998753

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.20  E-value=5.8e-12  Score=100.75  Aligned_cols=51  Identities=31%  Similarity=0.634  Sum_probs=43.8

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLAR  699 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILpt  699 (701)
                      .....|+||++.+.++  ...++|||.||..||.+|+..+.+||+||+.+...
T Consensus         3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   53 (68)
T 1chc_A            3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred             CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence            3467899999998764  35789999999999999999999999999987653

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=100.95  Aligned_cols=49  Identities=29%  Similarity=0.638  Sum_probs=43.1

Q ss_pred             CCCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      .+...|+||++.|.++.   .+ +|||.||..||.+|+..+..||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (72)
T 2djb_A           13 TPYILCSICKGYLIDAT---TITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ   62 (72)
T ss_dssp             CGGGSCTTTSSCCSSCE---ECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred             CCCCCCCCCChHHHCcC---EECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence            45678999999998764   55 999999999999999999999999998754

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.7e-11  Score=101.92  Aligned_cols=53  Identities=25%  Similarity=0.595  Sum_probs=44.7

Q ss_pred             CCCCCCccccccccccCCCc-eeeeCCCCcccHHHHHHHHhcC---CCCCCCCCCcc
Q 047787          645 SPTNNGSCCICQEKYADGEN-LGKLDCGHDFHPNCIKQWLVRK---NQCPICKMTGL  697 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~-Lr~LPCGHiFH~dCI~qWL~rK---nSCPICRkeIL  697 (701)
                      ...+...|+||++.|.+.+. ...|+|||.||..||.+|+..+   ..||+||+.+.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            34556789999999988654 5578999999999999999976   78999999764

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.3e-11  Score=102.38  Aligned_cols=50  Identities=20%  Similarity=0.456  Sum_probs=43.6

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ......|+||++.|.++.   .++|||.||..||.+|+.....||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNPV---VTKCRHYFCESCALEHFRATPRCYICDQPTGG   61 (81)
T ss_dssp             CCCCSBCSSSCSBCCSEE---ECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred             CCCCCCCcCCCchhcCee---EccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence            345678999999997764   68999999999999999999999999998753

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=5.6e-12  Score=101.59  Aligned_cols=49  Identities=39%  Similarity=0.946  Sum_probs=43.5

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLAR  699 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILpt  699 (701)
                      .+...|+||++.+.+    ..++|+|.||..||.+|+..+..||+||+.+...
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred             CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence            456789999999877    4889999999999999999999999999987643

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.14  E-value=1.2e-11  Score=112.75  Aligned_cols=47  Identities=36%  Similarity=0.921  Sum_probs=42.0

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      +..|+||++.|.++.   .|+|||.||..||..|+..+.+||+||+.+..
T Consensus        53 ~~~C~iC~~~~~~~~---~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           53 ELQCIICSEYFIEAV---TLNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HSBCTTTCSBCSSEE---EETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             cCCCcccCcccCCce---ECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            357999999998765   78999999999999999999999999998753

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.13  E-value=2.4e-11  Score=99.80  Aligned_cols=50  Identities=24%  Similarity=0.699  Sum_probs=42.8

Q ss_pred             CCCCCccccccccccCCCceeeeC-CCCcccHHHHHHHHhcC--CCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVRK--NQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LP-CGHiFH~dCI~qWL~rK--nSCPICRkeILp  698 (701)
                      ..+...|+||++.|.++.   .|+ |||.||..||.+|+..+  ..||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           12 IPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             SCGGGSCSSSCCCCTTCE---ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             CCCCCCCcCCChHHhCCe---EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            345678999999998776   688 99999999999999865  689999998553

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.13  E-value=2.9e-12  Score=116.80  Aligned_cols=53  Identities=26%  Similarity=0.550  Sum_probs=3.4

Q ss_pred             CCCCCCCccccccccccCCC---------------ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787          644 ESPTNNGSCCICQEKYADGE---------------NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG  696 (701)
Q Consensus       644 esseedeeCpICLEEFedgE---------------~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI  696 (701)
                      ..+..++.|+||+++|.+..               .+..++|+|.||..||.+||..+.+||+||++.
T Consensus        43 ~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~  110 (117)
T 4a0k_B           43 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW  110 (117)
T ss_dssp             EECCCC--------------------------------------------------------------
T ss_pred             eecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence            34556789999999997632               233359999999999999999999999999984

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=2.6e-11  Score=97.95  Aligned_cols=50  Identities=30%  Similarity=0.588  Sum_probs=42.4

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh---cCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV---RKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~---rKnSCPICRkeILp  698 (701)
                      ..+...|+||++.|.++.   .++|||.||..||..|+.   .+..||+||+.+..
T Consensus        17 ~~~~~~C~IC~~~~~~~~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           17 LQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCBCTTTCSBCSSEE---ECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             CccCCEeccCCcccCCeE---EcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            345678999999998655   679999999999999997   45689999998764

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=4.1e-11  Score=95.86  Aligned_cols=49  Identities=20%  Similarity=0.568  Sum_probs=42.6

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILp  698 (701)
                      .+...|+||++.+.++.   .++|||.||..||.+|+. ....||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            45678999999998877   589999999999999995 56789999998754

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.11  E-value=4.8e-11  Score=97.86  Aligned_cols=49  Identities=29%  Similarity=0.621  Sum_probs=43.0

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc------CCCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR------KNQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r------KnSCPICRkeILp  698 (701)
                      .....|+||++.|.++.   .++|||.||..||..|+..      ...||+||+.+..
T Consensus        17 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPV---SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CTTTSCTTTCSCCSSCE---ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             ccCCCCcCCChhhCcce---eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            45678999999998876   7899999999999999997      6789999998753

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=4.3e-11  Score=101.99  Aligned_cols=53  Identities=28%  Similarity=0.688  Sum_probs=44.5

Q ss_pred             CCCCCCccccccccccCCCceeeeCCC-----CcccHHHHHHHHhcCC--CCCCCCCCccc
Q 047787          645 SPTNNGSCCICQEKYADGENLGKLDCG-----HDFHPNCIKQWLVRKN--QCPICKMTGLA  698 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~LPCG-----HiFH~dCI~qWL~rKn--SCPICRkeILp  698 (701)
                      .......|.||+++|.+++.+ ++||.     |.||..||++||..+.  +||+||..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            345567899999999877766 58996     9999999999999664  89999998754

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.09  E-value=5.1e-11  Score=97.81  Aligned_cols=48  Identities=25%  Similarity=0.432  Sum_probs=42.6

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeIL  697 (701)
                      .+...|+||++.|.++.   .++|||.||..||.+|+.. +.+||+||+.+.
T Consensus         6 ~~~~~C~IC~~~~~~Pv---~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~   54 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPV---IVSTGQTYERSSIQKWLDAGHKTCPKSQETLL   54 (78)
T ss_dssp             SSSSSCTTTSCCCSSEE---EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred             cccCCCCCccccccCCE---EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence            45678999999998776   7899999999999999986 778999999874

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=5.9e-11  Score=97.33  Aligned_cols=50  Identities=28%  Similarity=0.699  Sum_probs=43.3

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc------CCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR------KNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r------KnSCPICRkeILp  698 (701)
                      ..+...|+||++.|.++.   .|+|||.||..||..|+..      ...||+||+.+..
T Consensus        16 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQPL---SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCTTTCSCCSSCB---CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             ccCCCCCCCCCcccCCce---eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            345678999999998765   6799999999999999987      7789999998753

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.07  E-value=2.7e-11  Score=99.00  Aligned_cols=50  Identities=30%  Similarity=0.619  Sum_probs=43.1

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-------CCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-------KNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-------KnSCPICRkeILp  698 (701)
                      ..+...|+||++.|.++.   .|+|||.||..||.+|+..       ...||+||+.+..
T Consensus         9 ~~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            9 VQEEVTCPICLELLTEPL---SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCEETTTTEECSSCC---CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             cccCCCCcCCCcccCCee---ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            345678999999998876   6899999999999999986       5689999998753

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=92.22  Aligned_cols=44  Identities=32%  Similarity=0.681  Sum_probs=38.3

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh---cCCCCCCC
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV---RKNQCPIC  692 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~---rKnSCPIC  692 (701)
                      ..+...|+||++.|.++.   .|+|||.||..||.+|+.   .+..||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSCE---ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCeE---EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            355678999999998765   679999999999999998   45689998

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.05  E-value=6.1e-11  Score=102.93  Aligned_cols=47  Identities=32%  Similarity=0.670  Sum_probs=41.1

Q ss_pred             CCccccccccccCCCceee-eCCCCcccHHHHHHHHhcC-CCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGK-LDCGHDFHPNCIKQWLVRK-NQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~-LPCGHiFH~dCI~qWL~rK-nSCPICRkeILp  698 (701)
                      ...|+||++.|.++.   . ++|||.||..||.+|+..+ ..||+||+.+..
T Consensus        22 ~~~C~IC~~~~~~p~---~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           22 VFRCFICMEKLRDAR---LCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCccCCccccCcc---ccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            467999999998654   5 8999999999999999987 699999998643

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.05  E-value=6.9e-11  Score=103.90  Aligned_cols=52  Identities=29%  Similarity=0.660  Sum_probs=44.9

Q ss_pred             CCCCccccccccccCC----CceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADG----ENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedg----E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      .+...|+||++.|.++    ..+..++|||.||..||.+||..+.+||+||+.+..
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            3567899999999875    344688999999999999999999999999998753

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.04  E-value=1.2e-10  Score=98.44  Aligned_cols=48  Identities=25%  Similarity=0.708  Sum_probs=41.9

Q ss_pred             CCCCCccccccccccCCCceeeeC-CCCcccHHHHHHHHhcC--CCCCCCCCCc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVRK--NQCPICKMTG  696 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LP-CGHiFH~dCI~qWL~rK--nSCPICRkeI  696 (701)
                      ..+...|+||++.|.++.   .|+ |||.||..||..|+...  ..||+||+.+
T Consensus        10 ~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A           10 IPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             CCcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            355788999999999876   789 99999999999999854  5899999986

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.03  E-value=9.2e-11  Score=100.69  Aligned_cols=47  Identities=32%  Similarity=0.683  Sum_probs=41.3

Q ss_pred             CCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ...|+||++.|.++.   .+ +|||.||..||..|+..+..||+||+.+..
T Consensus        22 ~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEYFNIAM---IIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCcccCChhhCCcC---EECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            467999999998754   55 999999999999999999999999998753

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.02  E-value=8.8e-11  Score=102.46  Aligned_cols=48  Identities=27%  Similarity=0.710  Sum_probs=42.4

Q ss_pred             CCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          648 NNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      +...|+||++.|.++.   .+ +|||.||..||..|+..+..||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDAT---TIIECLHSFCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGTBCTTTSSBCSSEE---EETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CcCCCccCChHHhCcC---EeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence            4578999999998754   55 999999999999999999999999998764

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.6e-10  Score=89.26  Aligned_cols=43  Identities=35%  Similarity=0.969  Sum_probs=37.4

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh---cCCCCCCC
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV---RKNQCPIC  692 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~---rKnSCPIC  692 (701)
                      .+...|+||++.|.++.   .|+|||.||..||.+|+.   .+..||+|
T Consensus        13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEPV---IIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSCC---CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCccE---eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            45678999999998876   689999999999999954   56789998

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.01  E-value=1.2e-10  Score=103.87  Aligned_cols=47  Identities=21%  Similarity=0.443  Sum_probs=40.9

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC-CCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn-SCPICRkeILp  698 (701)
                      ...|+||++.|.++.   .++|||.||..||..|+..+. .||+||+.+..
T Consensus        52 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFRPI---TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcCcE---EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            467999999998765   789999999999999998554 89999998754

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.97  E-value=2.6e-10  Score=98.85  Aligned_cols=46  Identities=33%  Similarity=0.607  Sum_probs=40.4

Q ss_pred             CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC---CCCCCCCCccc
Q 047787          650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN---QCPICKMTGLA  698 (701)
Q Consensus       650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn---SCPICRkeILp  698 (701)
                      ..|+||++.|.++.   .++|||.||..||..|+..+.   .||+||..+..
T Consensus        22 ~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           22 LECPICLELIKEPV---STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             TSCSSSCCCCSSCC---BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCcccChhhcCeE---ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            57999999998776   689999999999999999664   89999997653

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.96  E-value=2.2e-10  Score=106.75  Aligned_cols=48  Identities=25%  Similarity=0.574  Sum_probs=40.5

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCcc
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGL  697 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeIL  697 (701)
                      ....|+||++.|.++.  ..++|||.||..||..||.. +..||+||..+.
T Consensus        53 ~~~~C~IC~~~~~~p~--~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           53 SELMCPICLDMLKNTM--TTKECLHRFCADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             HHHBCTTTSSBCSSEE--EETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCcccChHhhCcC--EeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence            3458999999998754  23499999999999999997 778999999874

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.93  E-value=6.4e-10  Score=88.70  Aligned_cols=51  Identities=25%  Similarity=0.561  Sum_probs=41.3

Q ss_pred             CCCccccccc-cccCCCce-eeeCCCCcccHHHHHHHHhc-CCCCCCCCCCccc
Q 047787          648 NNGSCCICQE-KYADGENL-GKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGLA  698 (701)
Q Consensus       648 edeeCpICLE-EFedgE~L-r~LPCGHiFH~dCI~qWL~r-KnSCPICRkeILp  698 (701)
                      ++..|+||++ .|..+... ..++|||.||..||.+|+.. ...||+||+.+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            3567999999 78777543 35799999999999999875 4679999998754

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.91  E-value=4.8e-10  Score=98.53  Aligned_cols=53  Identities=28%  Similarity=0.638  Sum_probs=45.1

Q ss_pred             CCCCCccccccccccCC----CceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADG----ENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedg----E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ......|+||++.|.+.    .....++|||.||..||.+||..+.+||+||..+..
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH  125 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence            35567899999999764    234578999999999999999999999999998764

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.91  E-value=5.1e-10  Score=104.49  Aligned_cols=48  Identities=21%  Similarity=0.463  Sum_probs=41.7

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC-CCCCCCCCcccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICKMTGLAR  699 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn-SCPICRkeILpt  699 (701)
                      ...|+||++.|.++.   .|+|||.||..||..|+.... .||+||..+...
T Consensus        78 ~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVYQPV---TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhcCCE---EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            367999999998776   689999999999999999665 799999987643

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.89  E-value=2.2e-10  Score=100.78  Aligned_cols=47  Identities=23%  Similarity=0.570  Sum_probs=41.2

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCcc
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGL  697 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeIL  697 (701)
                      ++..|+||++.|.++.   .|+|||.||..||.+|+.. +..||+||+.+.
T Consensus        14 ~~~~C~iC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           14 SECQCGICMEILVEPV---TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHHBCTTTCSBCSSCE---ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCCccCCcccCcee---EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            3567999999998776   7799999999999999986 668999999864

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.1e-09  Score=92.88  Aligned_cols=52  Identities=23%  Similarity=0.560  Sum_probs=43.4

Q ss_pred             CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC--CCCCCCCCCccc
Q 047787          645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK--NQCPICKMTGLA  698 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK--nSCPICRkeILp  698 (701)
                      ..+..+.|.||++.|..++.  ...|+|.||..||.+||+.+  .+||+||+.+..
T Consensus        11 y~~~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           11 YPDAVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             CSSSSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             ccCCCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            34567899999999987652  33999999999999999977  889999987653

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.88  E-value=5.8e-10  Score=99.06  Aligned_cols=50  Identities=24%  Similarity=0.498  Sum_probs=42.9

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC-CCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn-SCPICRkeILp  698 (701)
                      ..+...|+||++.|.++.   .++|||.||..||.+|+..+. .||+||..+..
T Consensus        15 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           15 LESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcCChhhcCeE---ECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            345678999999998774   689999999999999999765 89999998754

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.86  E-value=1.1e-09  Score=93.13  Aligned_cols=48  Identities=13%  Similarity=0.079  Sum_probs=43.8

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      .....|+||++.|.++.   +++|||.||..||.+||....+||+||..+.
T Consensus        12 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~   59 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPV---RLPSGTVMDRSIILRHLLNSPTDPFNRQMLT   59 (85)
T ss_dssp             CTTTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             chheECcccCchhcCCe---ECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence            45678999999999988   8899999999999999998899999999764

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.82  E-value=1.4e-09  Score=95.78  Aligned_cols=47  Identities=32%  Similarity=0.607  Sum_probs=41.3

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeILp  698 (701)
                      ...|+||++.|.++.   .++|||.||..||.+|+.. ...||+||..+..
T Consensus        23 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           23 SISCQICEHILADPV---ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcHhcCcE---EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            467999999998765   6899999999999999997 7789999998754

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.81  E-value=1.7e-09  Score=95.20  Aligned_cols=49  Identities=14%  Similarity=0.092  Sum_probs=44.2

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      .....|+||++.|.++.   +++|||.||..||.+||....+||+||.++..
T Consensus        27 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPV---RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             STTTBCTTTCSBCSSEE---EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             cHhhCCcCccCcccCCe---ECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence            45678999999999998   88999999999999999988899999998653

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.79  E-value=2.2e-09  Score=94.13  Aligned_cols=49  Identities=12%  Similarity=0.012  Sum_probs=44.2

Q ss_pred             CCCCccccccccccCCCceeeeCCC-CcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCG-HDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCG-HiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      .+...|+||++.|.++.   +++|| |.||+.||.+||....+||+||.++..
T Consensus        20 p~~~~CpI~~~~m~dPV---~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CTTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cHhcCCcCccccccCCe---ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            45678999999999998   88999 999999999999988899999998653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.78  E-value=2.6e-09  Score=104.43  Aligned_cols=49  Identities=14%  Similarity=0.046  Sum_probs=42.8

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC-CCCCCCCCCcc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK-NQCPICKMTGL  697 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK-nSCPICRkeIL  697 (701)
                      ......|+||++.|.++.   +++|||+||..||..||... .+||+||.++.
T Consensus       205 ~~~~~~c~i~~~~~~dPv---~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~  254 (281)
T 2c2l_A          205 IPDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT  254 (281)
T ss_dssp             CCSTTBCTTTCSBCSSEE---ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             CCcccCCcCcCCHhcCCe---ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence            345778999999999988   88999999999999999864 45999999875

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.76  E-value=1.5e-09  Score=87.86  Aligned_cols=50  Identities=26%  Similarity=0.522  Sum_probs=42.2

Q ss_pred             CCCccccccccccCCCceeee--CCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787          648 NNGSCCICQEKYADGENLGKL--DCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI  700 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~L--PCGHi-FH~dCI~qWL~rKnSCPICRkeILptL  700 (701)
                      ++..|.||++.+.+..   .+  ||||. ||..|+..|+..+..||+||+.+...+
T Consensus         7 ~~~~C~IC~~~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i   59 (64)
T 2vje_A            7 AIEPCVICQGRPKNGC---IVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV   59 (64)
T ss_dssp             GGSCCTTTSSSCSCEE---EEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEE
T ss_pred             CcCCCCcCCCCCCCEE---EECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceE
Confidence            4578999999876553   44  99999 899999999999899999999886543

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.74  E-value=3.7e-09  Score=113.18  Aligned_cols=47  Identities=28%  Similarity=0.615  Sum_probs=41.2

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILp  698 (701)
                      ...|+||++.+.+.   ..++|||.||..||..|+. .+..||+||+.+..
T Consensus       332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            46899999998664   3789999999999999999 78899999998754

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.71  E-value=2.1e-09  Score=95.29  Aligned_cols=44  Identities=25%  Similarity=0.600  Sum_probs=39.6

Q ss_pred             CCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          649 NGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      ...|+||++.|.++.   .+ +|||.||..||..|+.  ..||+||..+.
T Consensus        22 ~~~C~IC~~~~~~pv---~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           22 LLRCSRCTNILREPV---CLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             TTSCSSSCSCCSSCB---CCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             CCCCCCCChHhhCcc---EeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence            467999999998876   67 9999999999999998  78999999874

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.71  E-value=2.5e-09  Score=86.41  Aligned_cols=53  Identities=25%  Similarity=0.439  Sum_probs=42.5

Q ss_pred             CCCCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI  700 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILptL  700 (701)
                      .....|.||++.+.+.. +..+||||. ||..|+..|......||+||+++...+
T Consensus         5 ~~~~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i   58 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDGN-IIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVI   58 (63)
T ss_dssp             GGGSBCTTTSSSBSCEE-EEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEE
T ss_pred             CcCCCCcccCCcCCCeE-EEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceE
Confidence            34578999999876554 222399998 999999999998889999999886543

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.71  E-value=8.9e-09  Score=87.13  Aligned_cols=52  Identities=17%  Similarity=0.403  Sum_probs=40.3

Q ss_pred             CCCCCccccccccccCCCceeee--CCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKL--DCGHDFHPNCIKQWLV-RKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~L--PCGHiFH~dCI~qWL~-rKnSCPICRkeILp  698 (701)
                      ..++..|+||++.+...+. ..+  +|||.||..||..|+. ....||+||+.+..
T Consensus         8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred             cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence            3456789999999865432 234  5999999999999985 45679999998754

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.70  E-value=3.6e-09  Score=83.20  Aligned_cols=46  Identities=26%  Similarity=0.453  Sum_probs=39.4

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      .+...|+||++.|.++.   .|+|||.||..||..|   ...||+||+.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPK---LLPCLHTLCSGCLEAS---GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCS---CSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeE---EcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence            45678999999999876   7899999999999884   6789999998753

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.69  E-value=1.9e-09  Score=99.79  Aligned_cols=47  Identities=21%  Similarity=0.545  Sum_probs=41.3

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC-CCCCCCCCc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICKMTG  696 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn-SCPICRkeI  696 (701)
                      .....|+||++.|.++.   .++|||.||..||.+|+.... .||+||.++
T Consensus        29 ~~~~~C~IC~~~~~~pv---~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           29 EAKYLCSACRNVLRRPF---QAQCGHRYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             CGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CcCcCCCCCChhhcCcE---ECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            45678999999998885   689999999999999998665 899999975

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.65  E-value=4.2e-09  Score=87.10  Aligned_cols=45  Identities=22%  Similarity=0.503  Sum_probs=38.6

Q ss_pred             CCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI  700 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILptL  700 (701)
                      ...|+||++.+.+..   .+||||. ||..|+..|    ..||+||+.+...+
T Consensus        24 ~~~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~   69 (74)
T 4ic3_A           24 EKLCKICMDRNIAIV---FVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQ   69 (74)
T ss_dssp             HTBCTTTSSSBCCEE---EETTCCBCCCHHHHTTC----SBCTTTCCBCSEEE
T ss_pred             CCCCCCCCCCCCCEE---EcCCCChhHHHHhhhcC----ccCCCcCcCccCcE
Confidence            357999999987654   7899999 999999999    88999999886543

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=9.5e-09  Score=88.66  Aligned_cols=46  Identities=26%  Similarity=0.583  Sum_probs=39.7

Q ss_pred             CCCCccccccccccCCCceeeeC-CCCcccHHHHHHHHhcC------CCCCC--CCCC
Q 047787          647 TNNGSCCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVRK------NQCPI--CKMT  695 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LP-CGHiFH~dCI~qWL~rK------nSCPI--CRke  695 (701)
                      .....|+||++.|.++.   +++ |||.||+.||.+||...      .+||+  |++.
T Consensus         5 ~~~~~CPI~~~~~~dPV---~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPV---KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSEE---EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCCE---EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            45678999999999887   785 99999999999999854      48999  9865

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.57  E-value=1.9e-08  Score=93.97  Aligned_cols=50  Identities=24%  Similarity=0.498  Sum_probs=42.8

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC-CCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn-SCPICRkeILp  698 (701)
                      ..+...|+||++.|.++.   .++|||.||..||.+|+..+. .||+||..+..
T Consensus        15 ~~~~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           15 LESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCChhhcCcE---ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            345678999999998875   689999999999999998654 89999998754

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=2.7e-08  Score=82.12  Aligned_cols=44  Identities=23%  Similarity=0.514  Sum_probs=37.2

Q ss_pred             CccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787          650 GSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI  700 (701)
Q Consensus       650 eeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILptL  700 (701)
                      ..|+||++.+.+..   .+||||. ||..|+..    ...||+||+.+...+
T Consensus        26 ~~C~IC~~~~~~~~---~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~~   70 (75)
T 2ecg_A           26 KLCKICMDRNIAIV---FVPCGHLVTCKQCAEA----VDKCPMCYTVITFKQ   70 (75)
T ss_dssp             HSCSSSCSSCCCBC---CSSSCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred             CCCCcCCCCCCCEE---EecCCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence            56999999987765   7899999 99999964    378999999887654

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.53  E-value=1.8e-08  Score=106.98  Aligned_cols=55  Identities=25%  Similarity=0.591  Sum_probs=42.9

Q ss_pred             CCCCCccccccccccCCCce----e-eeCCCCcccHHHHHHHHhcC-----------CCCCCCCCCccccC
Q 047787          646 PTNNGSCCICQEKYADGENL----G-KLDCGHDFHPNCIKQWLVRK-----------NQCPICKMTGLARI  700 (701)
Q Consensus       646 seedeeCpICLEEFedgE~L----r-~LPCGHiFH~dCI~qWL~rK-----------nSCPICRkeILptL  700 (701)
                      .+...+|+||++.+.+...+    + -++|+|.||..||.+||+..           ..||.||+++...|
T Consensus       305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf  375 (381)
T 3k1l_B          305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF  375 (381)
T ss_dssp             CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred             ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence            35677899999999873322    2 23799999999999999842           46999999887655

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.48  E-value=5.9e-08  Score=94.27  Aligned_cols=51  Identities=14%  Similarity=0.035  Sum_probs=43.7

Q ss_pred             CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC-CCCCCCCCCccc
Q 047787          645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK-NQCPICKMTGLA  698 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK-nSCPICRkeILp  698 (701)
                      .......|+||++.|.++.   +++|||.||..||..||... .+||+|+.++..
T Consensus       102 ~ip~~f~CPI~~elm~DPV---~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          102 EIPDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCcHhhcccCccccCCCCe---ECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            3456788999999999887   78999999999999999864 469999997643

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=9.2e-08  Score=78.64  Aligned_cols=48  Identities=27%  Similarity=0.612  Sum_probs=39.2

Q ss_pred             CCCCCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI  700 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILptL  700 (701)
                      ..+...|.||++.+.+.   ..|||||. ||..|+..    ...||+||+.+...+
T Consensus        12 ~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~   60 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESF   60 (68)
T ss_dssp             CCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred             CCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence            34567899999987654   37899999 99999984    478999999987654

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.39  E-value=7.8e-08  Score=82.20  Aligned_cols=48  Identities=23%  Similarity=0.510  Sum_probs=39.4

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC--------CCCCC--CCCC
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK--------NQCPI--CKMT  695 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK--------nSCPI--CRke  695 (701)
                      ....|+||++++..++.+..++|||.||..||.+++..+        -.||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            456899999999877655445899999999999999732        36999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.30  E-value=8.8e-08  Score=80.72  Aligned_cols=44  Identities=25%  Similarity=0.582  Sum_probs=36.8

Q ss_pred             CCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLAR  699 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILpt  699 (701)
                      ...|.||++.+.+..   .+||||. ||..|+..|    ..||+||..+...
T Consensus        18 ~~~C~IC~~~~~~~v---~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           18 AMLCMVCCEEEINST---FCPCGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HTBCTTTSSSBCCEE---EETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             CCEeEEeCcccCcEE---EECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            357999999876543   7899999 999999887    4999999987654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.29  E-value=5.2e-07  Score=73.14  Aligned_cols=48  Identities=27%  Similarity=0.692  Sum_probs=37.7

Q ss_pred             CCCCccccccccccCCCceeeeCCC--C---cccHHHHHHHHhc--CCCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCG--H---DFHPNCIKQWLVR--KNQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCG--H---iFH~dCI~qWL~r--KnSCPICRkeIL  697 (701)
                      .+...|.||+++..  +.+ .+||.  |   .||..||.+|+..  +.+||+||.++.
T Consensus         4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            45678999999843  333 57865  4   8999999999984  568999999764

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.27  E-value=9.6e-08  Score=100.56  Aligned_cols=46  Identities=24%  Similarity=0.602  Sum_probs=39.5

Q ss_pred             CCCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI  700 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILptL  700 (701)
                      +...|+||++.+.+..   .|||||. ||..|+..|    ..||+||..+...+
T Consensus       294 ~~~~C~IC~~~~~~~v---~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~  340 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVV---FIPCGHLVVCQECAPSL----RKCPICRGIIKGTV  340 (345)
T ss_dssp             TTCBCTTTSSSBCCEE---EETTCCEEECTTTGGGC----SBCTTTCCBCCEEE
T ss_pred             CCCCCCccCCcCCceE---EcCCCChhHhHHHHhcC----CcCCCCCCCccCeE
Confidence            3468999999987655   7899999 999999998    78999999887654

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.25  E-value=2.9e-07  Score=74.60  Aligned_cols=46  Identities=13%  Similarity=0.077  Sum_probs=41.0

Q ss_pred             CccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          650 GSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       650 eeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ..|+||++.+.++.   .+ +|||+|.+.||.+||..+.+||+++.++..
T Consensus         4 ~~CpIs~~~m~dPV---~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~   50 (61)
T 2bay_A            4 MLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   50 (61)
T ss_dssp             CCCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             EEecCCCCCCCCCE---EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence            57999999999775   77 899999999999999988889999988743

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.20  E-value=3.5e-07  Score=93.90  Aligned_cols=48  Identities=23%  Similarity=0.399  Sum_probs=39.8

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC--CCCCC--CCCCcc
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK--NQCPI--CKMTGL  697 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK--nSCPI--CRkeIL  697 (701)
                      ....|+||++.|.++.  ..+.|||.||+.||.+|+...  ..||+  |++.+.
T Consensus       180 ~el~CPIcl~~f~DPV--ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          180 IELTCPITCKPYEAPL--ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             CCSBCTTTSSBCSSEE--EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             eeeECcCccCcccCCe--eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            3458999999998887  234999999999999999854  46999  998654

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.46  E-value=5.6e-05  Score=67.98  Aligned_cols=45  Identities=20%  Similarity=0.318  Sum_probs=35.9

Q ss_pred             ccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCcc
Q 047787          651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGL  697 (701)
Q Consensus       651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeIL  697 (701)
                      .|.+|--.+.  ...+.+||+|+||.+|+..|.++ .++||.|+.++.
T Consensus         3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            4777765543  44567899999999999999864 578999999875

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.37  E-value=7.1e-05  Score=75.22  Aligned_cols=48  Identities=23%  Similarity=0.573  Sum_probs=39.3

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC--CCCCCCCCcc
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN--QCPICKMTGL  697 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn--SCPICRkeIL  697 (701)
                      ....|.||.+-...+.  ++-.|+|.||..|+..|++.+.  .||.|+....
T Consensus       179 ~i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             TCCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            4788999999998765  2234999999999999998654  8999998653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.09  E-value=0.036  Score=47.44  Aligned_cols=34  Identities=18%  Similarity=0.403  Sum_probs=26.5

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHH
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQW  682 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qW  682 (701)
                      +..|.||.+.|........+.|+|.||..|+..|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            4679999987544333445899999999999983

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=90.06  E-value=0.18  Score=41.73  Aligned_cols=49  Identities=18%  Similarity=0.371  Sum_probs=35.0

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC----CCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK----NQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK----nSCPICRkeILp  698 (701)
                      .....|.||.+.   ++.+..-.|...||..|+...|...    -.||.|+....+
T Consensus        10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p   62 (66)
T 2lri_C           10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP   62 (66)
T ss_dssp             CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred             CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence            445679999753   4433333799999999999888743    369999876543

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=86.03  E-value=0.57  Score=41.36  Aligned_cols=38  Identities=21%  Similarity=0.531  Sum_probs=27.0

Q ss_pred             CCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHH
Q 047787          644 ESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQW  682 (701)
Q Consensus       644 esseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qW  682 (701)
                      +....++.|.||- .|...+.+..--|+-+||..|+++.
T Consensus        10 e~~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           10 EPVVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             cCCCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence            3445688999995 3455553333358999999999996

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=80.66  E-value=0.91  Score=54.02  Aligned_cols=51  Identities=14%  Similarity=0.048  Sum_probs=44.1

Q ss_pred             CCCCCCccccccccccCCCceeeeCCC-CcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          645 SPTNNGSCCICQEKYADGENLGKLDCG-HDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       645 sseedeeCpICLEEFedgE~Lr~LPCG-HiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ...+...|+|-++-+.++.   +++.| ++|-+.+|.+||....+||+=|.++-.
T Consensus       887 ~iP~~F~cPIs~~lM~DPV---ilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~  938 (968)
T 3m62_A          887 DVPDEFLDPLMYTIMKDPV---ILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL  938 (968)
T ss_dssp             CSCGGGBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCcHHhCCcchhhHHhCCe---EcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence            4456778999999999988   89998 689999999999999999999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	701
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	1e-17
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	6e-15
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	4e-13
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-11
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-10
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	4e-10
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	5e-10
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	6e-10
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-08
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-07
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	9e-07
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	5e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	3e-05
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	5e-04
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	0.003

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 74.9 bits (184), Expect = 1e-17
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 652 CCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICK 693
           C +C  +  DGE    L  CGH FH  C+  WL   + CP+C+
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 67.7 bits (165), Expect = 6e-15
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
           C IC E  ++      L C H F   CI +W+ +   CP+CK
Sbjct: 8   CPICLEDPSNYSMA--LPCLHAFCYVCITRWIRQNPTCPLCK 47

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 4e-13
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 15/58 (25%)

Query: 651 SCCICQEKYADGENLGK---------------LDCGHDFHPNCIKQWLVRKNQCPICK 693
           +C IC+    D     +                 C H FH +CI +WL  +  CP+  
Sbjct: 23  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 80

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 3e-11
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWL-VRKNQCPICK 693
           C IC E     +++    CGH    +C+  W       CP C+
Sbjct: 26  CKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 65

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 651 SCCICQEKYADGENLGK-LDCGHDFHPNCIKQWLVRKN-QCPICK 693
            C +C E     +       CG+     C  +    +N  CP C+
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 46

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 53.7 bits (128), Expect = 4e-10
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 652 CCICQEKYADGENL--GKLDCGHDFHPNCIKQWL--VRKNQCPICK 693
           C IC E+  +      G      + H +C+  WL   R   C IC 
Sbjct: 9   CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 5e-10
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 6/42 (14%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
           C  CQ +    +    L C H     C++       QCPIC+
Sbjct: 9   CQQCQAEAKCPK---LLPCLHTLCSGCLEAS---GMQCPICQ 44

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 6e-10
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%)

Query: 651 SCCICQEKYADGENLGKL--DCGHDFHPNCIKQWL-VRKNQCPICK 693
            C  C+       +L  +   CGH    +C+          CP C 
Sbjct: 5   GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECG 50

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWL-VRKNQCPICK 693
           SC IC+       +  +  C H F   CI + L V  + CP C+
Sbjct: 25  SCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCR 65

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 11/68 (16%)

Query: 642 GSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWL--------VRKNQCPICK 693
           GS   +    C +C  +Y   +      C   F   C+KQ++             CP   
Sbjct: 1   GSSGSS---GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

Query: 694 MTGLARIH 701
                 + 
Sbjct: 58  CPKQGHLQ 65

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (107), Expect = 9e-07
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN---QCPICK 693
            C IC E   +        C H F   C+ + L +K    QCP+CK
Sbjct: 23  ECPICLELIKEPV---STKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 18/78 (23%), Positives = 22/78 (28%), Gaps = 21/78 (26%)

Query: 637 TVQRYGSESPT-NNGSCCICQEKY---------------ADGENLGKLDCGHDFHPNCIK 680
            +++Y  E        C IC EK                          C H FH  C+ 
Sbjct: 12  VIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLL 71

Query: 681 QWLVRKN-----QCPICK 693
                 N     QCP CK
Sbjct: 72  AMYCNGNKDGSLQCPSCK 89

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
            C  C     +   L    C H F  NC+   +     CP+C 
Sbjct: 24  RCSRCTNILREPVCL--GGCEHIFCSNCVSDCI--GTGCPVCY 62

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 2/42 (4%)

Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
           C I  +                F  + ++Q++      PI  
Sbjct: 3   CAISGKVPRRPVL--SPKSRTIFEKSLLEQYVKDTGNDPITN 42

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 642 GSESPTNNGSCCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVRKNQ-----CPICK 693
           GS    ++G C  C E YA  E     D C   FH  C+K    R        CP C 
Sbjct: 1   GSSG--SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCS 56

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 3/56 (5%)

Query: 642 GSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697
           GS        C I  E   D      +  G  +  + I++WL   ++        L
Sbjct: 1   GSPEFPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	701
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.51
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.33
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.31
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.25
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.18
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.17
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.04
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.03
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.98
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.94
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.85
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.85
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.8
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.79
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.6
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.38
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	86.87
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	83.31
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	82.14

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.51  E-value=2.6e-15  Score=118.07  Aligned_cols=51  Identities=35%  Similarity=0.969  Sum_probs=46.3

Q ss_pred             CCCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      +++.+|+||+++|..++.+..+ +|+|.||..||.+||+.+++||+||++++
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4556799999999999988877 59999999999999999999999999875

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.33  E-value=2.4e-13  Score=109.82  Aligned_cols=49  Identities=31%  Similarity=0.656  Sum_probs=42.8

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ..+.|+||++.|.+.  ++.++|||.||.+||.+||+.+.+||+||+++..
T Consensus         4 ~~d~C~IC~~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCccCCcCccCC--cEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            457799999999754  4568999999999999999999999999998754

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=7.4e-13  Score=115.14  Aligned_cols=51  Identities=31%  Similarity=0.505  Sum_probs=40.4

Q ss_pred             CCCCccccccccccCC---------------CceeeeCCCCcccHHHHHHHHhcC-----CCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADG---------------ENLGKLDCGHDFHPNCIKQWLVRK-----NQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedg---------------E~Lr~LPCGHiFH~dCI~qWL~rK-----nSCPICRkeIL  697 (701)
                      ..++.|+||+++|...               ..+..++|+|+||..||.+||..+     .+||+||+.+.
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            3467899999998642               235567999999999999999854     37999998653

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2e-12  Score=109.08  Aligned_cols=51  Identities=27%  Similarity=0.580  Sum_probs=42.9

Q ss_pred             CCCCccccccccccCCC---------------ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787          647 TNNGSCCICQEKYADGE---------------NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL  697 (701)
Q Consensus       647 eedeeCpICLEEFedgE---------------~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL  697 (701)
                      ..++.|+||++.+.+..               .+..++|+|+||..||.+||+.+++||+||++..
T Consensus        19 ~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          19 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            45677999999887633               2456799999999999999999999999999753

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.3e-12  Score=105.49  Aligned_cols=48  Identities=27%  Similarity=0.600  Sum_probs=40.7

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCcccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLAR  699 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILpt  699 (701)
                      ...|+||++.+.+.   +.++|||.||..||..||. +++.||+||+.+...
T Consensus        23 ~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          23 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TTBCTTTSSSBCCE---ECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCCccCCCcCCCe---EEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            45799999988654   4889999999999999998 557899999988653

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.9e-12  Score=99.03  Aligned_cols=47  Identities=19%  Similarity=0.393  Sum_probs=39.8

Q ss_pred             ccccccccccCCCce-eeeCCCCcccHHHHHHHHhc-CCCCCCCCCCcc
Q 047787          651 SCCICQEKYADGENL-GKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGL  697 (701)
Q Consensus       651 eCpICLEEFedgE~L-r~LPCGHiFH~dCI~qWL~r-KnSCPICRkeIL  697 (701)
                      +|+||+++|...+.. ..++|||.||..||++|+.. +..||+||+++.
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            699999999877643 44599999999999999985 557999999864

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.8e-12  Score=101.57  Aligned_cols=51  Identities=24%  Similarity=0.523  Sum_probs=40.7

Q ss_pred             CCCccccccccccCCC--ceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCccc
Q 047787          648 NNGSCCICQEKYADGE--NLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGLA  698 (701)
Q Consensus       648 edeeCpICLEEFedgE--~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeILp  698 (701)
                      ++..|+||++++....  .+..++|||.||..||.+||.. +..||+||+.+-.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            4688999999865443  3445699999999999999975 5679999998743

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=2.4e-11  Score=94.91  Aligned_cols=45  Identities=13%  Similarity=0.104  Sum_probs=40.3

Q ss_pred             ccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          651 SCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       651 eCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      .|+||++.++++.   .+ .|||+||++||.+||+.+.+||+||+++..
T Consensus         2 ~C~Ic~~~~~~Pv---~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           2 LCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCccCCchHHhcC---ccCCCCCcccHHHHHHHHhhccCCCccCCcCCH
Confidence            5999999998776   66 699999999999999999999999998754

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.2e-11  Score=102.32  Aligned_cols=45  Identities=33%  Similarity=0.623  Sum_probs=39.6

Q ss_pred             CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC---CCCCCCCCcc
Q 047787          650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN---QCPICKMTGL  697 (701)
Q Consensus       650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn---SCPICRkeIL  697 (701)
                      ..|+||++.|.++.   .++|||.||..||..|+..+.   .||+||+++.
T Consensus        22 l~CpIC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          22 LECPICLELIKEPV---STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             TSCSSSCCCCSSCC---BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             cCCCccCchhCCeE---EcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            46999999998876   789999999999999998653   7999999874

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=8.7e-11  Score=99.89  Aligned_cols=46  Identities=33%  Similarity=0.616  Sum_probs=40.1

Q ss_pred             CccccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787          650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLA  698 (701)
Q Consensus       650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILp  698 (701)
                      ..|+||++.|.++.   .++|||.||..||.+|++ +...||+||.++..
T Consensus        24 l~C~IC~~~~~~pv---~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          24 ISCQICEHILADPV---ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             TBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCCccCCcchhcce---ecCCCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            56999999998765   889999999999999997 45689999998654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=7.4e-11  Score=92.91  Aligned_cols=45  Identities=27%  Similarity=0.479  Sum_probs=39.0

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      +...|+||++.|.++.   .|+|||.||..||.+|   +..||+||+++..
T Consensus         5 ~~l~C~IC~~~~~~p~---~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~   49 (56)
T d1bora_           5 QFLRCQQCQAEAKCPK---LLPCLHTLCSGCLEAS---GMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCCS---CSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred             CCCCCcccCcccCCCE---EecCCCHHhHHHHHcC---CCcCcCCCCcccC
Confidence            3468999999998876   7899999999999876   6789999998764

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=7e-10  Score=91.33  Aligned_cols=49  Identities=14%  Similarity=0.066  Sum_probs=42.8

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeILp  698 (701)
                      .++..|+||++.|.++.   +++|||.||..||.+||.. +..||+||..+..
T Consensus         5 P~~l~CpIc~~l~~dPv---~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           5 PDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CSTTBCTTTCSBCSSEE---ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CccccCcCcCchhhhhc---ccCCcCeecHHHHHHHHhcCCccCCCccccccc
Confidence            56788999999999887   7899999999999999984 5579999987653

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.85  E-value=7.3e-10  Score=86.97  Aligned_cols=52  Identities=25%  Similarity=0.563  Sum_probs=38.7

Q ss_pred             CCCCCccccccccccCCCce--eeeCCCCcccHHHHHHHHh--cCCCCCCCCCCcc
Q 047787          646 PTNNGSCCICQEKYADGENL--GKLDCGHDFHPNCIKQWLV--RKNQCPICKMTGL  697 (701)
Q Consensus       646 seedeeCpICLEEFedgE~L--r~LPCGHiFH~dCI~qWL~--rKnSCPICRkeIL  697 (701)
                      +++...|.||++++......  ....|+|.||..||.+|+.  .+.+||+||++.-
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            45677899999998765411  1113459999999999996  4568999999753

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.3e-10  Score=95.51  Aligned_cols=46  Identities=22%  Similarity=0.498  Sum_probs=37.9

Q ss_pred             CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ...|+||++.|.++.  ..++|||.||..||.+|+.  +.||+||..+..
T Consensus        22 ~l~C~IC~~~~~~pv--~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (97)
T d1jm7b_          22 LLRCSRCTNILREPV--CLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (97)
T ss_dssp             TTSCSSSCSCCSSCB--CCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             cCCCccCCchhhcCc--eeCCCCCchhHHHHHHHHh--ccccccCCcCch
Confidence            357999999998875  2348999999999999984  459999987643

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.79  E-value=1.3e-09  Score=89.07  Aligned_cols=49  Identities=24%  Similarity=0.407  Sum_probs=42.7

Q ss_pred             CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC-CCCCCCCCCccc
Q 047787          647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK-NQCPICKMTGLA  698 (701)
Q Consensus       647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK-nSCPICRkeILp  698 (701)
                      .++..|+||++.|.++.   +++|||.||+.||.+|+..+ ..||.|+..+..
T Consensus         6 P~~l~CpIc~~~m~dPV---~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           6 PEYFRCPISLELMKDPV---IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCCCSSEE---EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CccCCCcCcCchhhCce---EccCCCcchHHHHHHHHHHCCCCCCcccccCCc
Confidence            46788999999999886   78999999999999999864 569999998654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1e-08  Score=88.07  Aligned_cols=50  Identities=12%  Similarity=0.014  Sum_probs=43.9

Q ss_pred             CCCCCccccccccccCCCceeeeCCC-CcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787          646 PTNNGSCCICQEKYADGENLGKLDCG-HDFHPNCIKQWLVRKNQCPICKMTGLA  698 (701)
Q Consensus       646 seedeeCpICLEEFedgE~Lr~LPCG-HiFH~dCI~qWL~rKnSCPICRkeILp  698 (701)
                      ..+...|+||++.|.++.   +++|+ |.|++.||.+||..+..||+|++++..
T Consensus        19 ~P~~f~CPI~~~lm~dPV---~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          19 ACDEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CCTTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             CcHHhCCcCchhHHHHHH---hcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            345789999999999998   88876 589999999999999999999998753

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6e-08  Score=81.02  Aligned_cols=47  Identities=21%  Similarity=0.448  Sum_probs=37.8

Q ss_pred             CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC--------CCCCCCCC
Q 047787          648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK--------NQCPICKM  694 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK--------nSCPICRk  694 (701)
                      ....|+||++++...+.+..++|+|.||..||+.|++.+        -.||.|+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            457899999999777666666999999999999999722        14998654

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.87  E-value=0.098  Score=38.57  Aligned_cols=44  Identities=30%  Similarity=0.643  Sum_probs=30.5

Q ss_pred             ccccccccccCCCceeeeCCCCcccHHHHHHHHhcC----CCCCCCCC
Q 047787          651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK----NQCPICKM  694 (701)
Q Consensus       651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK----nSCPICRk  694 (701)
                      .|.||...-.....+..-.|...||..|+..-+...    -.||.||.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            588997664433322222799999999998876532    24999986

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.31  E-value=0.091  Score=40.40  Aligned_cols=50  Identities=30%  Similarity=0.532  Sum_probs=34.9

Q ss_pred             CCCccccccccccCCCcee-eeCCCCcccHHHHHHHHh-----cCCCCCCCCCCcc
Q 047787          648 NNGSCCICQEKYADGENLG-KLDCGHDFHPNCIKQWLV-----RKNQCPICKMTGL  697 (701)
Q Consensus       648 edeeCpICLEEFedgE~Lr-~LPCGHiFH~dCI~qWL~-----rKnSCPICRkeIL  697 (701)
                      ....|.||...+.+.+.+. .-.|+..||..|+..-..     .+..||.|+..--
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~~   60 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG   60 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcCC
Confidence            4568999999877765432 338999999999963211     2346999976543

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.14  E-value=0.44  Score=39.86  Aligned_cols=38  Identities=24%  Similarity=0.548  Sum_probs=29.2

Q ss_pred             CCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHH
Q 047787          644 ESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQW  682 (701)
Q Consensus       644 esseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qW  682 (701)
                      +....++.|.|| +.|...+.+-.--|+-+||..|+++.
T Consensus        10 e~v~~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          10 EPVVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             cCCCcCcccccc-CcccccceecceeecchhhHHHHHHh
Confidence            445678899999 78877773323347899999999987