Citrus Sinensis ID: 047846

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQDM
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccccccccccEEEEEcccccccHHHHcccccccccccccccEEEcccccccEEEEEEccccccccEEEEccEEEEEcccHHHHHHHHHcccccccEEEEEEEEccccccHHHHHHHcccEEEEcccccccccccccccHHHHHHHHHHHccccHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHEEEEEEEccccccccccEEEEEEccccccHHHHHHHccccccccccccEEccccccccEEEEEcccccccccEEccccEEEEccHHHHHHHHHHcccccccccEEEEEEcccccccHHHHHHHHccEEEEccccHHEccccccccHHHHHHHHHHHHcccHHHHcccccccc
Coil and Loop (DISEMBL)
LDGIRTFERTVVLLLRsgtrhpqegpfgvvinrplhkkikhmkptnhelattfadcslhfggplEASMFLLKtgqsklpgfeevipglcfgaRNSLDEAAALVKkgvlkpqdfrfFVGYAGWQLDQLREEIESDYWYVAACssdlicgatsdtssESLWEEILQLMGGHyselsrkpkqdm
Flexible Loop (DISEMBL)
LDGIRTFERTVVLLlrsgtrhpqegpfgvvinrpLHKKIKHMKPTNHELATTFADCSLHFGGPLEASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMgghyselsrkpkqdm
Low Complexity Region (SEG)
LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQDM
Disordered region (IsUnstruct)
*****TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGG*************
Disordered Region (DISOPRED)
LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQ**
Disordered Region (DISEMBL)
LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQDM
Disordered Region (DISPRO)
***IRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQDM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q3AQ69	188	UPF0301 protein Cag_1601	yes	no	0.861	0.829	0.335	8e-20
A1BEV6	187	UPF0301 protein Cpha266_0	yes	no	0.872	0.844	0.310	2e-18
Q3B561	189	UPF0301 protein Plut_0637	yes	no	0.872	0.835	0.298	2e-18
Q8KEM4	187	UPF0301 protein CT0663 OS	yes	no	0.872	0.844	0.321	2e-18
B3QMC9	187	UPF0301 protein Cpar_0662	yes	no	0.872	0.844	0.304	3e-18
B4SD86	187	UPF0301 protein Ppha_2142	yes	no	0.872	0.844	0.310	2e-17
B3EHS7	187	UPF0301 protein Clim_0777	yes	no	0.856	0.828	0.299	1e-16
Q11U74	182	UPF0301 protein CHU_1773	yes	no	0.878	0.873	0.325	3e-15
Q2S591	188	UPF0301 protein SRU_0495	yes	no	0.883	0.851	0.304	2e-14
Q5LDK5	196	UPF0301 protein BF2109 OS	yes	no	0.856	0.790	0.282	2e-12

>sp|Q3AQ69|Y1601_CHLCH UPF0301 protein Cag_1601 OS=Chlorobium chlorochromatii (strain CaD3) GN=Cag_1601 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 20/176 (11%)

Query: 6   TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCS--LHFGGP 63
            F+RTV+L+      H +EG  G ++NRPL  K++       E    F D    LH GGP
Sbjct: 25  NFKRTVLLM----CEHNEEGSLGFILNRPLEFKVR-------EAIHGFNDVDDVLHQGGP 73

Query: 64  LEA-SMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGW 122
           ++  S+  L +    +   +EV+PG+ +G     DE + L+  GV+ P + RF++GYAGW
Sbjct: 74  VQVNSIHFLHSRGDLIHNSQEVLPGIYWGGNK--DEVSYLLNTGVMHPSEIRFYLGYAGW 131

Query: 123 QLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPK 178
              QL  E E   WY A  + D+I    SD + E +W   ++  GG Y  ++  P+
Sbjct: 132 SAGQLFSEFEEGAWYTAEATPDVIF---SD-AYERMWSRTVRAKGGAYQLIANSPE 183

Chlorobium chlorochromatii (strain CaD3) (taxid: 340177)

>sp|A1BEV6|Y885_CHLPD UPF0301 protein Cpha266_0885 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=Cpha266_0885 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 16/174 (9%)

Query: 6   TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLE 65
            F+RTV+++      H + G  G ++NRP+  K+        E+     +  LH GGP++
Sbjct: 24  NFKRTVLII----CEHNESGSLGFILNRPMEFKVCEAVAGFEEI-----EEPLHMGGPVQ 74

Query: 66  A-SMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQL 124
             ++  L +    + G  E+ PGL +G     ++ + L+  GV++P + RFF+GY+GW  
Sbjct: 75  VDTVHFLHSRGDIIDGATEIFPGLFWGGDK--NQVSFLLNTGVMQPSEIRFFLGYSGWSA 132

Query: 125 DQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPK 178
            QL EE E   WY+A  S D+I    SD + E +W   ++  GG Y  ++  P+
Sbjct: 133 GQLEEEFEIGSWYIAEASRDVIF---SD-AYERMWSRSVRSKGGEYQIVANAPE 182

Chlorobium phaeobacteroides (strain DSM 266) (taxid: 290317)

>sp|Q3B561|Y637_PELLD UPF0301 protein Plut_0637 OS=Pelodictyon luteolum (strain DSM 273) GN=Plut_0637 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 16/174 (9%)

Query: 6   TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLE 65
            F+RTV+++      H  +G  G ++NRP+  +++       E+     D  LH GGP++
Sbjct: 26  NFKRTVLMM----CEHNPQGSLGFILNRPMEFQVREAVAGFDEV-----DEPLHMGGPVQ 76

Query: 66  A-SMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQL 124
           + ++  L      + G E+++PGL +G     +E   L+  GVLKP + RFF+GYAGW  
Sbjct: 77  SNTVHFLHMRGDLIDGSEQILPGLYWGGDR--EELGYLLNTGVLKPSEIRFFLGYAGWSA 134

Query: 125 DQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPK 178
            QL  E E   WY A  +  ++         E +W   ++  GG Y  ++  P+
Sbjct: 135 GQLEAEFEEGSWYTADATPAMVFSG----EYERMWSRTVRSKGGEYQLIANSPE 184

Pelodictyon luteolum (strain DSM 273) (taxid: 319225)

>sp|Q8KEM4|Y663_CHLTE UPF0301 protein CT0663 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT0663 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 16/174 (9%)

Query: 6   TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLE 65
            F+RTV+L+      H +EG  G ++N+P+  K+        E+     D  LH GGP++
Sbjct: 24  NFKRTVLLM----CEHNEEGSIGFILNKPMEFKVCEAISGFDEI-----DEPLHMGGPVQ 74

Query: 66  A-SMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQL 124
             ++ +L T    + G  EVIPGL +G     ++ + L+  GV+K  + RFF+GYAGW  
Sbjct: 75  VDTVHVLHTRGDVIDGAVEVIPGLFWGGDK--EQLSYLINTGVIKASEVRFFLGYAGWSA 132

Query: 125 DQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPK 178
            QL  E E   WY A  SS+ +         E +W   ++  GG Y  ++  P+
Sbjct: 133 GQLEAEFEEGSWYTADASSEQVF----TDEYERMWSRSVRSKGGEYCYVANSPE 182

Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439)

>sp|B3QMC9|Y662_CHLP8 UPF0301 protein Cpar_0662 OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0662 PE=3 SV=1

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 16/174 (9%)

Query: 6   TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLE 65
            F+RTV+L+      H  EG  G ++N+P+  K+        E+     D  LH GGP++
Sbjct: 24  NFKRTVLLM----CEHNDEGSIGFILNKPMEFKVCEAISGFDEI-----DEPLHMGGPVQ 74

Query: 66  A-SMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQL 124
             ++  L T    +   +EV+PGL +G     ++ + L+  GV++P + RFF+GYAGW  
Sbjct: 75  VDTVHFLHTRGDVIDDAQEVLPGLFWGGDK--EQLSYLINTGVIRPSEVRFFLGYAGWSA 132

Query: 125 DQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPK 178
            QL++E E   WY A  S++ +         E +W   ++  GG Y  ++  P+
Sbjct: 133 GQLKDEFEEGSWYTADASNEQVF----TDEYERMWSRTVRSKGGDYCLVANSPE 182

Chlorobaculum parvum (strain NCIB 8327) (taxid: 517417)

>sp|B4SD86|Y2142_PELPB UPF0301 protein Ppha_2142 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=Ppha_2142 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 16/174 (9%)

Query: 6   TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLE 65
           +F+RTV+++      H + G    ++NRP+  K+        E+     +  LH GGP+E
Sbjct: 24  SFKRTVLVV----CEHNERGSLAFILNRPMEFKVCEAVSGFEEV-----EERLHMGGPVE 74

Query: 66  A-SMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQL 124
             ++  L +    + G  E++PG+ +G     +E + L+  GV+ P + RFF+GYAGW  
Sbjct: 75  VDTVHFLHSRGDLIDGSLEILPGIFWGGDK--NELSYLLNTGVMMPSEIRFFLGYAGWSA 132

Query: 125 DQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPK 178
            QL  E E   WY A  S D+I    SD + E +W   ++  GG Y  ++  P+
Sbjct: 133 GQLEAEFEEGAWYTAEASKDIIF---SD-AYERMWGRTVRSKGGEYQIVANSPE 182

Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) (taxid: 324925)

>sp|B3EHS7|Y777_CHLL2 UPF0301 protein Clim_0777 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=Clim_0777 PE=3 SV=1

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 22/177 (12%)

Query: 6   TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCS--LHFGGP 63
            F+RTV+L+      H ++G  G ++NRP+  K+        E    F D    LH GGP
Sbjct: 24  NFKRTVLLM----CEHNEQGSMGFILNRPMEFKV-------CEAIAGFEDIEEPLHMGGP 72

Query: 64  LEASM--FLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAG 121
           ++     F+   G S + G  E+  G+ +G     D+ + L+  GV+ P + RFF+GY+G
Sbjct: 73  VQVDTVHFIHSRGDS-IDGAIEIFDGVFWGGDK--DQLSYLINTGVINPNEIRFFLGYSG 129

Query: 122 WQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPK 178
           W   QL +E E   WY A  + ++I       + E +W   ++  GG Y  ++  P+
Sbjct: 130 WGAGQLEQEFEEGSWYTADATREMIF----TDAYERMWSRSVRSKGGEYRIVANSPE 182

Chlorobium limicola (strain DSM 245 / NBRC 103803) (taxid: 290315)

>sp|Q11U74|Y1773_CYTH3 UPF0301 protein CHU_1773 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=CHU_1773 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 19/178 (10%)

Query: 3   GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGG 62
           G  TFER+VVLL      H   G FG ++N+     I  +     E   TF + +L  GG
Sbjct: 15  GDSTFERSVVLL----CEHNDSGAFGFMLNKSTTLTINSVL----EEQLTF-EQNLFLGG 65

Query: 63  PL--EASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYA 120
           P+  ++  FLL+  ++ L     +   L +G     +    L+++G L+  + RFF+GY+
Sbjct: 66  PVAQDSLFFLLRQDRAILKDSVHIKDDLYWGG--DFEHLKTLIQEGTLELDNCRFFLGYS 123

Query: 121 GWQLDQLREEIESDYWYVAACSS-DLICGATSDTSSESLWEEILQLMGGHYSELSRKP 177
           GW  DQL  E+E   W +A  +S D+        + ES+W+ +L+ MGG Y  LS  P
Sbjct: 124 GWGEDQLEYELEKHSWIIADINSEDMFV-----KNPESMWQNVLRSMGGDYKVLSNYP 176

Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) (taxid: 269798)

>sp|Q2S591|Y495_SALRD UPF0301 protein SRU_0495 OS=Salinibacter ruber (strain DSM 13855 / M31) GN=SRU_0495 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 14/174 (8%)

Query: 6   TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLE 65
            F R+VVLL     R   EG FG+++NR L   +  +     E  T   D  L+ GGP++
Sbjct: 25  NFRRSVVLLCEHNDR---EGTFGLILNRELDVSLGDVL---DEYVTY--DPPLYMGGPVQ 76

Query: 66  ASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLD 125
                    +  +PG   +   + +G     +    L K G   P + RFF+GYAGW   
Sbjct: 77  RETLHYLHTREDIPGGVALPGDMTWGG--DFEAVQQLAKGGDAAPDNLRFFLGYAGWGPG 134

Query: 126 QLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQ 179
           QL  E+  + W  A  +++ +     DT  + LW  IL+ MGG Y+ L+  P  
Sbjct: 135 QLEGELGEEAWIPAPGAAEFVF----DTDPDQLWRAILRRMGGEYAVLANFPDD 184

Salinibacter ruber (strain DSM 13855 / M31) (taxid: 309807)

>sp|Q5LDK5|Y2109_BACFN UPF0301 protein BF2109 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=BF2109 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 22/177 (12%)

Query: 6   TFERTVVLLLRSGTRHPQEGPFGVVINRPL----HKKIKHMKPTNHELATTFADCSLHFG 61
           TF R+VVLL+     H +EG  G++IN+PL    +  IK  K           D  LH G
Sbjct: 33  TFGRSVVLLVD----HTEEGSMGLIINKPLPLMLNDIIKEFK--------YIEDIPLHKG 80

Query: 62  GPLEASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAG 121
           GP+            ++PG   +  GL        D     + +G       RFF+GY+G
Sbjct: 81  GPIGTDTLFYLHTLHEIPGTLPINNGLYLNG--DFDAIKKYILQGNPIKGKIRFFLGYSG 138

Query: 122 WQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPK 178
           W+ +QL +EI+ + W ++   +  +     +   + +W+E L  +G  Y   SR P+
Sbjct: 139 WECEQLIQEIKENTWIISKEENTYLM----NEDIKGMWKEALGKLGSKYETWSRFPQ 191

Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) (taxid: 272559)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
255574267	350	electron transporter, putative [Ricinus	1.0	0.517	0.934	9e-93
225460185	348	PREDICTED: uncharacterized protein LOC10	0.994	0.517	0.873	7e-90
449490162	362	PREDICTED: uncharacterized LOC101222789	1.0	0.5	0.895	3e-89
449441794	362	PREDICTED: uncharacterized protein LOC10	1.0	0.5	0.895	3e-89
356517824	340	PREDICTED: UPF0301 protein Plut_0637-lik	0.994	0.529	0.873	3e-89
388501874	350	unknown [Lotus japonicus]	0.988	0.511	0.872	1e-88
358248446	340	uncharacterized protein LOC100783151 [Gl	0.994	0.529	0.862	9e-88
224136119	335	predicted protein [Populus trichocarpa]	0.977	0.528	0.861	1e-87
224145059	344	predicted protein [Populus trichocarpa]	1.0	0.526	0.895	2e-87
9665092	341	Unknown protein [Arabidopsis thaliana]	0.977	0.519	0.846	5e-84

>gi|255574267|ref|XP_002528048.1| electron transporter, putative [Ricinus communis] gi|223532578|gb|EEF34366.1| electron transporter, putative [Ricinus communis]

 Score =  344 bits (882), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 170/182 (93%), Positives = 178/182 (97%), Gaps = 1/182 (0%)

Query: 1   LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHF 60
           LDG+RTFERTVVLLLRSGTRHPQEGPFGVVINRPL+KKIKHMKPTN ELATTFADCSLHF
Sbjct: 169 LDGVRTFERTVVLLLRSGTRHPQEGPFGVVINRPLNKKIKHMKPTNKELATTFADCSLHF 228

Query: 61  GGPLEASMFLLKTGQS-KLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
           GGPLEASMFLL+TG+  KLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY
Sbjct: 229 GGPLEASMFLLQTGEKEKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 288

Query: 120 AGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQ 179
           AGWQLDQLREEIESDYWYVA+CSS+LICG +SD+SSESLWEEILQLMGGHYSELSRKPKQ
Sbjct: 289 AGWQLDQLREEIESDYWYVASCSSNLICGNSSDSSSESLWEEILQLMGGHYSELSRKPKQ 348

Query: 180 DM 181
           DM
Sbjct: 349 DM 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460185|ref|XP_002279455.1| PREDICTED: uncharacterized protein LOC100260279 [Vitis vinifera] gi|147778834|emb|CAN64828.1| hypothetical protein VITISV_030309 [Vitis vinifera] gi|297741045|emb|CBI31357.3| unnamed protein product [Vitis vinifera]

 Score =  334 bits (857), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 159/182 (87%), Positives = 173/182 (95%), Gaps = 2/182 (1%)

Query: 1   LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHF 60
           LDG+R+FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTN +LATTFADCSLHF
Sbjct: 168 LDGVRSFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNLDLATTFADCSLHF 227

Query: 61  GGPLEASMFLLKTGQS-KLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
           GGPLEASMFLLKTG++ KLPG EEVIPGLC+GARNSLDEAA LVK+GVLKPQDFRFFVGY
Sbjct: 228 GGPLEASMFLLKTGENPKLPGLEEVIPGLCYGARNSLDEAAKLVKQGVLKPQDFRFFVGY 287

Query: 120 AGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQ 179
           AGWQLDQLREEIESDYWYVAACS ++I G ++++SS  LWEE+LQLMGGHYSELSRKPKQ
Sbjct: 288 AGWQLDQLREEIESDYWYVAACSPNVISGVSAESSS-GLWEEVLQLMGGHYSELSRKPKQ 346

Query: 180 DM 181
           DM
Sbjct: 347 DM 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490162|ref|XP_004158526.1| PREDICTED: uncharacterized LOC101222789 [Cucumis sativus]

 Score =  332 bits (852), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 163/182 (89%), Positives = 174/182 (95%), Gaps = 1/182 (0%)

Query: 1   LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHF 60
           LDG+RTFERTVVLLLRSG+RHPQEGPFGVVINRPLHKKIKHMKPTN +LATTF++CSLHF
Sbjct: 181 LDGVRTFERTVVLLLRSGSRHPQEGPFGVVINRPLHKKIKHMKPTNIDLATTFSECSLHF 240

Query: 61  GGPLEASMFLLKTGQ-SKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
           GGPLEASMFLLK G+ SKL GFEEVIPGLCFGARN+LDEAA LVKKG+LKPQDFRFFVGY
Sbjct: 241 GGPLEASMFLLKAGEKSKLHGFEEVIPGLCFGARNTLDEAAVLVKKGILKPQDFRFFVGY 300

Query: 120 AGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQ 179
           AGWQLDQLREEIESDYWYVAACSS+LI G +SD+SSE LWEEILQLMGGHYSELSRKPKQ
Sbjct: 301 AGWQLDQLREEIESDYWYVAACSSNLIGGISSDSSSEGLWEEILQLMGGHYSELSRKPKQ 360

Query: 180 DM 181
           DM
Sbjct: 361 DM 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441794|ref|XP_004138667.1| PREDICTED: uncharacterized protein LOC101222789 [Cucumis sativus]

 Score =  332 bits (852), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 163/182 (89%), Positives = 174/182 (95%), Gaps = 1/182 (0%)

Query: 1   LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHF 60
           LDG+RTFERTVVLLLRSG+RHPQEGPFGVVINRPLHKKIKHMKPTN +LATTF++CSLHF
Sbjct: 181 LDGVRTFERTVVLLLRSGSRHPQEGPFGVVINRPLHKKIKHMKPTNIDLATTFSECSLHF 240

Query: 61  GGPLEASMFLLKTGQ-SKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
           GGPLEASMFLLK G+ SKL GFEEVIPGLCFGARN+LDEAA LVKKG+LKPQDFRFFVGY
Sbjct: 241 GGPLEASMFLLKAGEKSKLHGFEEVIPGLCFGARNTLDEAAVLVKKGILKPQDFRFFVGY 300

Query: 120 AGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQ 179
           AGWQLDQLREEIESDYWYVAACSS+LI G +SD+SSE LWEEILQLMGGHYSELSRKPKQ
Sbjct: 301 AGWQLDQLREEIESDYWYVAACSSNLIGGISSDSSSEGLWEEILQLMGGHYSELSRKPKQ 360

Query: 180 DM 181
           DM
Sbjct: 361 DM 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517824|ref|XP_003527586.1| PREDICTED: UPF0301 protein Plut_0637-like [Glycine max]

 Score =  332 bits (852), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 159/182 (87%), Positives = 170/182 (93%), Gaps = 2/182 (1%)

Query: 1   LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHF 60
           LDG+RTFERTV+LLLRSGTRH Q GPFG+VINRPLHKKIKHMKPTNH+L TTF+DCSLHF
Sbjct: 160 LDGVRTFERTVILLLRSGTRHHQGGPFGIVINRPLHKKIKHMKPTNHDLLTTFSDCSLHF 219

Query: 61  GGPLEASMFLLKTGQS-KLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
           GGPLEASM LLKT +  KLPGFEEVIPGLCFG+RNSLD+AA LVKKG+LKP DFRFFVGY
Sbjct: 220 GGPLEASMVLLKTEEKMKLPGFEEVIPGLCFGSRNSLDDAAGLVKKGILKPHDFRFFVGY 279

Query: 120 AGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQ 179
           AGWQLDQLR+EIESDYWYVAACSS L+CGA SD SSESLWEEILQLMGGHYSELSRKPKQ
Sbjct: 280 AGWQLDQLRDEIESDYWYVAACSSSLLCGALSD-SSESLWEEILQLMGGHYSELSRKPKQ 338

Query: 180 DM 181
           DM
Sbjct: 339 DM 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501874|gb|AFK39003.1| unknown [Lotus japonicus]

 Score =  330 bits (846), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 158/181 (87%), Positives = 170/181 (93%), Gaps = 2/181 (1%)

Query: 1   LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHF 60
           LDG+RTFERTVVLLLRSGTRHPQEGPFG+VINRPLHKKIKHMKPTNH+L TTF+DCSLHF
Sbjct: 170 LDGVRTFERTVVLLLRSGTRHPQEGPFGIVINRPLHKKIKHMKPTNHDLLTTFSDCSLHF 229

Query: 61  GGPLEASMFLLKTGQ-SKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
           GGPLEASMFLLKTG+ SKLPG EEVIPGLCFGARNSLD AAALVKKG+L+P D  FFVGY
Sbjct: 230 GGPLEASMFLLKTGEKSKLPGLEEVIPGLCFGARNSLDSAAALVKKGILRPHDCSFFVGY 289

Query: 120 AGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQ 179
           AGWQ+DQLR+EIES+YW+VAACSS L+CGA SD  SESLWEEILQLMGGHYSELSRKPKQ
Sbjct: 290 AGWQMDQLRDEIESNYWHVAACSSSLLCGALSD-PSESLWEEILQLMGGHYSELSRKPKQ 348

Query: 180 D 180
           D
Sbjct: 349 D 349

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248446|ref|NP_001239883.1| uncharacterized protein LOC100783151 [Glycine max] gi|255636262|gb|ACU18471.1| unknown [Glycine max]

 Score =  327 bits (839), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 157/182 (86%), Positives = 169/182 (92%), Gaps = 2/182 (1%)

Query: 1   LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHF 60
           LDGIRTFERTV+LLLRSGTRH Q GPFG+VINRPLHKKIKH+KPTNH+L TTF+DCSLHF
Sbjct: 160 LDGIRTFERTVILLLRSGTRHHQGGPFGIVINRPLHKKIKHLKPTNHDLLTTFSDCSLHF 219

Query: 61  GGPLEASMFLLKTGQS-KLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
           GGPLEASM LLKT +  KLPGFEEVIPGLCFG+RNSLD+AA LVKKG+LKP DFRFFVGY
Sbjct: 220 GGPLEASMVLLKTEEKMKLPGFEEVIPGLCFGSRNSLDDAAGLVKKGILKPHDFRFFVGY 279

Query: 120 AGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQ 179
           AGWQLDQLR+EIESDYWYVAACSS L+CGA SD  SESLWEEILQLMGGHYS+LSRKPKQ
Sbjct: 280 AGWQLDQLRDEIESDYWYVAACSSSLLCGALSD-PSESLWEEILQLMGGHYSKLSRKPKQ 338

Query: 180 DM 181
           DM
Sbjct: 339 DM 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136119|ref|XP_002327385.1| predicted protein [Populus trichocarpa] gi|222835755|gb|EEE74190.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/181 (86%), Positives = 168/181 (92%), Gaps = 4/181 (2%)

Query: 1   LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHF 60
           LDG+RTFERTVVLLLRSGTRHPQEGPFGVV+NRPL+KKI+HMKPTN EL TTFADCSL+F
Sbjct: 159 LDGVRTFERTVVLLLRSGTRHPQEGPFGVVVNRPLNKKIRHMKPTNMELETTFADCSLNF 218

Query: 61  GGPLEASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYA 120
           GGPL+ASMFLLK+ + K+  FEEVIPGLCFGA NSLDEA ALV++GVLKPQDFRFFVGYA
Sbjct: 219 GGPLDASMFLLKSREKKIKEFEEVIPGLCFGAGNSLDEAGALVREGVLKPQDFRFFVGYA 278

Query: 121 GWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQD 180
           GWQLDQLREEIESDYWYVAACSS+LICG     SSESLWEEILQLMGGHYSELSRKPKQD
Sbjct: 279 GWQLDQLREEIESDYWYVAACSSNLICGG----SSESLWEEILQLMGGHYSELSRKPKQD 334

Query: 181 M 181
           M
Sbjct: 335 M 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145059|ref|XP_002325512.1| predicted protein [Populus trichocarpa] gi|222862387|gb|EEE99893.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/182 (89%), Positives = 175/182 (96%), Gaps = 1/182 (0%)

Query: 1   LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHF 60
           LDG+RTFERTVVLLLRSGTRHPQEGPFGVVINRPL+KK++HMKPTN ELATTFAD SLHF
Sbjct: 163 LDGVRTFERTVVLLLRSGTRHPQEGPFGVVINRPLNKKVRHMKPTNMELATTFADFSLHF 222

Query: 61  GGPLEASMFLLKTGQ-SKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
           GGPLEASMFLLKTG+ +KL  FEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY
Sbjct: 223 GGPLEASMFLLKTGEKTKLEEFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 282

Query: 120 AGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQ 179
           AGWQLDQLREEIES+YWYVAACSS+LICG +S +SSESLWEEILQLMGGHYSELSRKPK+
Sbjct: 283 AGWQLDQLREEIESNYWYVAACSSNLICGGSSGSSSESLWEEILQLMGGHYSELSRKPKR 342

Query: 180 DM 181
           D+
Sbjct: 343 DV 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9665092|gb|AAF97283.1|AC010164_5 Unknown protein [Arabidopsis thaliana]

 Score =  315 bits (807), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 154/182 (84%), Positives = 166/182 (91%), Gaps = 5/182 (2%)

Query: 1   LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHF 60
           LDG RTF RTVVLLLR+GTRHPQEGPFGVVINRPLHK IKHMK T  ELATTF++CSL+F
Sbjct: 164 LDGYRTFARTVVLLLRAGTRHPQEGPFGVVINRPLHKNIKHMKSTKTELATTFSECSLYF 223

Query: 61  GGPLEASMFLLKTG-QSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
           GGPLEASMFLLKTG ++K+PGFEEV+PGL FG RNSLDEAA LVKKGVLKPQ+FRFFVGY
Sbjct: 224 GGPLEASMFLLKTGDKTKIPGFEEVMPGLNFGTRNSLDEAAVLVKKGVLKPQEFRFFVGY 283

Query: 120 AGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQ 179
           AGWQLDQLREEIESDYW+VAACSSDLICGA    SSE+LWEEILQLMGG YSELSRKPK 
Sbjct: 284 AGWQLDQLREEIESDYWHVAACSSDLICGA----SSENLWEEILQLMGGQYSELSRKPKL 339

Query: 180 DM 181
           D+
Sbjct: 340 DI 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2012628	325	AT1G33780 [Arabidopsis thalian	0.977	0.544	0.846	4.2e-79
TAIR|locus:2094817	317	AT3G29240 "AT3G29240" [Arabido	0.895	0.511	0.439	8.8e-31
UNIPROTKB|P67757	202	MT0043 "UPF0301 protein Rv0038	0.872	0.782	0.307	6.4e-12
UNIPROTKB|Q83A18	194	CBU_2093 "UPF0301 protein CBU_	0.834	0.778	0.290	4.5e-11
TIGR_CMR|CBU_2093	194	CBU_2093 "conserved hypothetic	0.834	0.778	0.290	4.5e-11
UNIPROTKB|Q8EBZ9	187	SO_3346 "UPF0301 protein SO_33	0.861	0.834	0.287	2e-10
TIGR_CMR|SO_3346	187	SO_3346 "conserved hypothetica	0.861	0.834	0.287	2e-10
UNIPROTKB|Q5LX84	184	SPO0296 "UPF0301 protein SPO02	0.812	0.798	0.269	1.3e-07
TIGR_CMR|SPO_0296	184	SPO_0296 "conserved hypothetic	0.812	0.798	0.269	1.3e-07
UNIPROTKB|Q0C3C2	188	HNE_1049 "UPF0301 protein HNE_	0.834	0.803	0.28	1.7e-07

TAIR|locus:2012628 AT1G33780 [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 154/182 (84%), Positives = 166/182 (91%)

Query:     1 LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHF 60
             LDG RTF RTVVLLLR+GTRHPQEGPFGVVINRPLHK IKHMK T  ELATTF++CSL+F
Sbjct:   148 LDGYRTFARTVVLLLRAGTRHPQEGPFGVVINRPLHKNIKHMKSTKTELATTFSECSLYF 207

Query:    61 GGPLEASMFLLKTG-QSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
             GGPLEASMFLLKTG ++K+PGFEEV+PGL FG RNSLDEAA LVKKGVLKPQ+FRFFVGY
Sbjct:   208 GGPLEASMFLLKTGDKTKIPGFEEVMPGLNFGTRNSLDEAAVLVKKGVLKPQEFRFFVGY 267

Query:   120 AGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPKQ 179
             AGWQLDQLREEIESDYW+VAACSSDLICGA    SSE+LWEEILQLMGG YSELSRKPK 
Sbjct:   268 AGWQLDQLREEIESDYWHVAACSSDLICGA----SSENLWEEILQLMGGQYSELSRKPKL 323

Query:   180 DM 181
             D+
Sbjct:   324 DI 325

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2094817 AT3G29240 "AT3G29240" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 76/173 (43%), Positives = 105/173 (60%)

Query:     1 LDGIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHF 60
             LDG+  FE+TV+LLL  G   P  GP GV++NRP    IK  K T  ++A TF+D  L F
Sbjct:   143 LDGVHIFEKTVILLLSVG---PS-GPIGVILNRPSLMSIKETKSTILDMAGTFSDKRLFF 198

Query:    61 GGPLEASMFLL--KTGQSKLPG----FEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFR 114
             GGPLE  +FL+  ++G     G    F +V+ GL +G R S+  AA +VK+ ++   + R
Sbjct:   199 GGPLEEGLFLVSPRSGGDNEVGKSGVFRQVMKGLYYGTRESVGLAAEMVKRNLVGRSELR 258

Query:   115 FFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMG 167
             FF GY GW+ +QL+ EI   YW VAACSS ++    S   S  LW+E+L L+G
Sbjct:   259 FFDGYCGWEKEQLKAEILGGYWTVAACSSTVV-ELGSAVQSHGLWDEVLGLIG 310

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|P67757 MT0043 "UPF0301 protein Rv0038/MT0043" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 55/179 (30%), Positives = 86/179 (48%)

Query:     6 TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPL- 64
             TF R+V+ ++     H   G  GVV+NRP    + ++ P   +LA      ++  GGP+ 
Sbjct:    35 TFRRSVIYIVE----HNDGGTLGVVLNRPSETAVYNVLPQWAKLAAK--PKTMFIGGPVK 88

Query:    65 -EASMFL--LKTGQSK--LPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
              +A++ L  L+ G     +PG   V   L     ++  E  A   +GV      R + GY
Sbjct:    89 RDAALCLAVLRVGADPEGVPGLRHVAGRLVMVDLDADPEVLAAAVEGV------RIYAGY 142

Query:   120 AGWQLDQLREEIESDYWYV-AACSSDLICGATSDTSSESLWEEIL--QLMGGHYSELSR 175
             +GW + QL  EIE D W V +A  SD++ G  +D   + L  + L   L+  H  +LSR
Sbjct:   143 SGWTIGQLEGEIERDDWIVLSALPSDVLVGPRADLWGQVLRRQPLPLSLLATHPIDLSR 201

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q83A18 CBU_2093 "UPF0301 protein CBU_2093" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 50/172 (29%), Positives = 87/172 (50%)

Query:     6 TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKI-KHMKPTNHELATT-FADCSLHFGGP 63
             TF + V+ +    ++H  +G  G++INRPL   + K ++  N E+A    A+  +  GGP
Sbjct:    35 TFTKAVIYV----SQHDAKGALGIIINRPLALTLGKVLEHLNIEIAQPQIANHPVLMGGP 90

Query:    64 L-EASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGW 122
             + +   F++   +S  P   E+   L   +++ LD+ A    KG   P DF   +GYAGW
Sbjct:    91 IGQEHGFIVYEQES--PQGAEI---LLSASKDMLDDIAK--NKG---PDDFLITLGYAGW 140

Query:   123 QLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELS 174
             +  QL  EI  + W V   +  ++     +T  +S W++   L+G   ++LS
Sbjct:   141 EAGQLENEIARNDWLVVPFNRKILF----ETPLKSRWQKAAALIGVDINQLS 188

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_2093 CBU_2093 "conserved hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 50/172 (29%), Positives = 87/172 (50%)

Query:     6 TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKI-KHMKPTNHELATT-FADCSLHFGGP 63
             TF + V+ +    ++H  +G  G++INRPL   + K ++  N E+A    A+  +  GGP
Sbjct:    35 TFTKAVIYV----SQHDAKGALGIIINRPLALTLGKVLEHLNIEIAQPQIANHPVLMGGP 90

Query:    64 L-EASMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGW 122
             + +   F++   +S  P   E+   L   +++ LD+ A    KG   P DF   +GYAGW
Sbjct:    91 IGQEHGFIVYEQES--PQGAEI---LLSASKDMLDDIAK--NKG---PDDFLITLGYAGW 140

Query:   123 QLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELS 174
             +  QL  EI  + W V   +  ++     +T  +S W++   L+G   ++LS
Sbjct:   141 EAGQLENEIARNDWLVVPFNRKILF----ETPLKSRWQKAAALIGVDINQLS 188

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8EBZ9 SO_3346 "UPF0301 protein SO_3346" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 50/174 (28%), Positives = 75/174 (43%)

Query:     7 FERTVVLLLRSGTRHPQEGPFGVVINRPL----HKKIKHMK-PTNHELATTFADCSLHFG 61
             FERTV+ L      H ++G  G+VIN+PL    +  ++ M  PT    A       +  G
Sbjct:    20 FERTVIYLCE----HDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMGSQVLMG 75

Query:    62 GPLEASM-FLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYA 120
             GP+     F+L T Q       E+  GL      S D   A+  K    P  F   +GYA
Sbjct:    76 GPVSQDRGFVLHTSQPYWANSTELGSGLML--TTSRDVLTAIGSKR--SPDKFLVALGYA 131

Query:   121 GWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELS 174
             GW  +QL +E+  + W        L+     D + E  W++  + +G    +LS
Sbjct:   132 GWSKNQLEQELADNSWLTIPADHALLF----DINHEDRWQQASRSLGFEAWQLS 181

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_3346 SO_3346 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 50/174 (28%), Positives = 75/174 (43%)

Query:     7 FERTVVLLLRSGTRHPQEGPFGVVINRPL----HKKIKHMK-PTNHELATTFADCSLHFG 61
             FERTV+ L      H ++G  G+VIN+PL    +  ++ M  PT    A       +  G
Sbjct:    20 FERTVIYLCE----HDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMGSQVLMG 75

Query:    62 GPLEASM-FLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYA 120
             GP+     F+L T Q       E+  GL      S D   A+  K    P  F   +GYA
Sbjct:    76 GPVSQDRGFVLHTSQPYWANSTELGSGLML--TTSRDVLTAIGSKR--SPDKFLVALGYA 131

Query:   121 GWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELS 174
             GW  +QL +E+  + W        L+     D + E  W++  + +G    +LS
Sbjct:   132 GWSKNQLEQELADNSWLTIPADHALLF----DINHEDRWQQASRSLGFEAWQLS 181

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5LX84 SPO0296 "UPF0301 protein SPO0296" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 126 (49.4 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 45/167 (26%), Positives = 75/167 (44%)

Query:     7 FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCS---LHFGGP 63
             FER+V+ L      H ++G  G+++N+P    +  +     E+ ++ A  +   +  GGP
Sbjct:    19 FERSVIFLCS----HGEDGAMGLIVNKPADLNVSTLLE-QLEIPSSSAAAARAPVRLGGP 73

Query:    64 LE-ASMFLLKTGQ--SKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYA 120
             +E A  F+L +     KL   + V  G    A  +LD    + +     P      +GY+
Sbjct:    74 VEMARGFVLHSPDYAGKLQSLK-VSDGFVMTA--TLDILEDIARDN--GPARAALMLGYS 128

Query:   121 GWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMG 167
             GW   QL  EI  + W  A    D++ G+  D      WE  L+L+G
Sbjct:   129 GWGPGQLEAEIGDNGWLTADADPDIVFGSRDDGK----WEAALKLLG 171

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0296 SPO_0296 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 126 (49.4 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 45/167 (26%), Positives = 75/167 (44%)

Query:     7 FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCS---LHFGGP 63
             FER+V+ L      H ++G  G+++N+P    +  +     E+ ++ A  +   +  GGP
Sbjct:    19 FERSVIFLCS----HGEDGAMGLIVNKPADLNVSTLLE-QLEIPSSSAAAARAPVRLGGP 73

Query:    64 LE-ASMFLLKTGQ--SKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYA 120
             +E A  F+L +     KL   + V  G    A  +LD    + +     P      +GY+
Sbjct:    74 VEMARGFVLHSPDYAGKLQSLK-VSDGFVMTA--TLDILEDIARDN--GPARAALMLGYS 128

Query:   121 GWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMG 167
             GW   QL  EI  + W  A    D++ G+  D      WE  L+L+G
Sbjct:   129 GWGPGQLEAEIGDNGWLTADADPDIVFGSRDDGK----WEAALKLLG 171

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C3C2 HNE_1049 "UPF0301 protein HNE_1049" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 126 (49.4 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 49/175 (28%), Positives = 75/175 (42%)

Query:     7 FERTVVLLLRSGTRHPQEGPFGVVINRP-----LHKKIKHMK-PTNHELATTFADCSLHF 60
             FER+V+L+      H  +   G+++N+P     L + I  M  P + +L       ++  
Sbjct:    23 FERSVILVCA----HTPDFAMGIILNKPMDGIDLQEIIDQMDIPQDVDLEGV----AILE 74

Query:    61 GGPLEASM-FLLKTGQSKLPGFE-EVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVG 118
             GGP+     F+L T      G   EV   LC  A   +  + A        P+ F   +G
Sbjct:    75 GGPVATERGFVLHTDDVICDGATMEVEDELCMTATREILASIA----SAAPPRKFVMALG 130

Query:   119 YAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSEL 173
             YAGW   QL +E+  + W + A  SDL+ G     + E  W   +  MG   S L
Sbjct:   131 YAGWGAGQLEQELAQNAWLIGAPDSDLVFG----DAYEHKWRHAMTRMGVDLSRL 181

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8KEM4	Y663_CHLTE	No assigned EC number	0.3218	0.8729	0.8449	yes	no
Q11U74	Y1773_CYTH3	No assigned EC number	0.3258	0.8784	0.8736	yes	no
A1BEV6	Y885_CHLPD	No assigned EC number	0.3103	0.8729	0.8449	yes	no
Q2S591	Y495_SALRD	No assigned EC number	0.3045	0.8839	0.8510	yes	no
B3QMC9	Y662_CHLP8	No assigned EC number	0.3045	0.8729	0.8449	yes	no
B4SD86	Y2142_PELPB	No assigned EC number	0.3103	0.8729	0.8449	yes	no
Q3AQ69	Y1601_CHLCH	No assigned EC number	0.3352	0.8618	0.8297	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_41000208 hypothetical protein (335 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
pfam02622	158	pfam02622, DUF179, Uncharacterized ACR, COG1678	4e-45
PRK00228	191	PRK00228, PRK00228, hypothetical protein; Validate	2e-27
COG1678	194	COG1678, COG1678, Putative transcriptional regulat	4e-24

>gnl|CDD|217150 pfam02622, DUF179, Uncharacterized ACR, COG1678

 Score =  145 bits (369), Expect = 4e-45
 Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 13/163 (7%)

Query: 6   TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLE 65
            F R+VVLL      H +EG  G+++NRPL   +  +          F+D  ++FGGP+E
Sbjct: 8   NFARSVVLLCE----HNEEGAMGLILNRPLDLTLADLLEQLDIEPGAFSDQPVYFGGPVE 63

Query: 66  A-SMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQL 124
               F+L +     P   EV  GL      SLD   A+ +     P+D   F+GYAGW  
Sbjct: 64  PDRGFVLHSPDDGEPSSLEVSDGLYLTT--SLDILEAIARGE--GPEDILVFLGYAGWGA 119

Query: 125 DQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMG 167
            QL +EI  + W VA    ++I     DT  E  WE  L+ +G
Sbjct: 120 GQLEQEIAENSWLVAPADPEIIF----DTPPEDRWEAALRRLG 158

Length = 158

>gnl|CDD|234694 PRK00228, PRK00228, hypothetical protein; Validated

 Score =  101 bits (254), Expect = 2e-27
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 22/176 (12%)

Query: 6   TFERTVVLLLRSGTRHPQEGPFGVVINRP----LHKKIKHMKP--TNHELATTFADCSLH 59
            F R+V+ +      H + G  G+VINRP    + + +  +    T  E+        + 
Sbjct: 25  NFARSVIYICE----HNENGAMGLVINRPSELDVAEVLPQLDILATPPEIRLDQP---VF 77

Query: 60  FGGPLEA-SMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVG 118
            GGP++    F+L + +        V  GL      S D   AL       P+     +G
Sbjct: 78  LGGPVQTDRGFVLHSPRDGFDSSIRVSDGLVLTT--SRDVLEALATGP--GPEGVLVALG 133

Query: 119 YAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELS 174
           YAGW   QL +EIE + W  A    +++     DT  E  W   L+ +G   + LS
Sbjct: 134 YAGWGAGQLEQEIEENAWLTAPADPEIL----FDTPPEDRWRAALRRLGIDLALLS 185

Length = 191

>gnl|CDD|224592 COG1678, COG1678, Putative transcriptional regulator [Transcription]

 Score = 93.1 bits (232), Expect = 4e-24
 Identities = 46/176 (26%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 6   TFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKI-----KHMKPTNHELATTFADCSLHF 60
            F R+VV +      H + G  G++INRP          + +K     L           
Sbjct: 28  IFARSVVYICE----HNENGAMGLIINRPSETLTLAELLEKLKLEIKILRLPKPVY---L 80

Query: 61  GGPLEAS-MFLLKTG-QSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVG 118
           GGP++    F+L +           V  GL      SLD   A+       P+     +G
Sbjct: 81  GGPVQRDRGFVLHSSDYGAFQSSLRVSDGLALTT--SLDVLEAIAAGKG--PEKALVALG 136

Query: 119 YAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELS 174
           YAGW   QL EEIE + W       +++     DT  E  W   L+ +G   + LS
Sbjct: 137 YAGWAAGQLEEEIEDNDWLTVPADPEILF----DTPPEDRWARALRRLGIDLALLS 188

Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
PRK00228	191	hypothetical protein; Validated	100.0
COG1678	194	Putative transcriptional regulator [Transcription]	100.0
PF02622	161	DUF179: Uncharacterized ACR, COG1678; InterPro: IP	100.0

>PRK00228 hypothetical protein; Validated

Probab=100.00  E-value=6.5e-51  Score=328.74  Aligned_cols=165  Identities=28%  Similarity=0.515  Sum_probs=140.0

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCccccc---ccccCCceeecCcccCCe-EEEEeCCCCC
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELA---TTFADCSLHFGGPLEASM-FLLKTGQSKL   78 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~~~~---~~~~~~~v~~GGPV~~~~-~~lh~~~~~~   78 (181)
                      .|++|+|||||||    +|+++||+|||||||++.+++++.+++....   ..+.+.|||+||||++++ ++||+....+
T Consensus        22 ~d~~F~rSVIll~----eH~~~Ga~GlIlNrp~~~~l~~ll~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~Lh~~~~~~   97 (191)
T PRK00228         22 QDPNFARSVIYIC----EHNENGAMGLVINRPSELDVAEVLPQLDILATPPEIRLDQPVFLGGPVQTDRGFVLHSPRDGF   97 (191)
T ss_pred             CCCCcCccEEEEE----EeCCCCceEEEEcCCCCCCHHHHHHHhcccccCcccccCCeEEeCCCccCCcEEEEEECCCcC
Confidence            4899999999999    8999999999999999999988876653211   123468999999999998 8888765567


Q ss_pred             CCceEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChHHH
Q 047846           79 PGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESL  158 (181)
Q Consensus        79 ~~~~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~~l  158 (181)
                      .++.+|.+|||++++  ++.+.. +..+ ..++++|||+|||||+|||||+||++|+|++++|++++||    +++.+++
T Consensus        98 ~~s~~v~~gl~l~~s--~d~l~~-l~~~-~~~~~~~~flGyaGW~~gQLe~Ei~~g~W~v~~a~~~~lf----~~~~~~~  169 (191)
T PRK00228         98 DSSIRVSDGLVLTTS--RDVLEA-LATG-PGPEGVLVALGYAGWGAGQLEQEIEENAWLTAPADPEILF----DTPPEDR  169 (191)
T ss_pred             CCceeecCCeEEeCC--HHHHHH-HhcC-CCCCcEEEEEEECCCCHHHHHHHHHcCCeEEccCCHHHhc----CCCHHHH
Confidence            789999999999974  444333 3344 4679999999999999999999999999999999999996    3455999


Q ss_pred             HHHHHHHcCCChhhhhcCCCC
Q 047846          159 WEEILQLMGGHYSELSRKPKQ  179 (181)
Q Consensus       159 W~~~l~~~G~~~~~ls~~p~~  179 (181)
                      |+++|+++|++|+.||+.|.+
T Consensus       170 W~~~l~~~G~~~~~ls~~~g~  190 (191)
T PRK00228        170 WRAALRRLGIDLALLSTQAGH  190 (191)
T ss_pred             HHHHHHHhCCCHHHhcCCccC
Confidence            999999999999999999865

>COG1678 Putative transcriptional regulator [Transcription]

Probab=100.00  E-value=1.7e-48  Score=311.47  Aligned_cols=164  Identities=27%  Similarity=0.466  Sum_probs=138.4

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccch-hcccccCCCcccccc-cccCCceeecCcccCCe-EEEEeCCC-CC
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLH-KKIKHMKPTNHELAT-TFADCSLHFGGPLEASM-FLLKTGQS-KL   78 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~-~~l~~~~~~~~~~~~-~~~~~~v~~GGPV~~~~-~~lh~~~~-~~   78 (181)
                      .|++|+|||||||    ||+++||||||||||++ .++.++......... ...+.+||+||||++++ |+||+... ..
T Consensus        25 ~d~~F~RSVvyic----eH~e~GamGliiNrp~~~~~~~~l~~~~~~~~~~~~~~~~v~~GGPv~~~rgfvLh~~~~~~~  100 (194)
T COG1678          25 QDPIFARSVVYIC----EHNENGAMGLIINRPSETLTLAELLEKLKLEIKILRLPKPVYLGGPVQRDRGFVLHSSDYGAF  100 (194)
T ss_pred             CCCccceeEEEEE----EeCCCCcEEEEecCCccccCHHHHHHHhcccccccccCceEEeCCcccccceEEEEeCCCCCC
Confidence            4899999999999    89999999999999999 777776543211000 13468999999999998 99998554 34


Q ss_pred             CCceEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChHHH
Q 047846           79 PGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESL  158 (181)
Q Consensus        79 ~~~~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~~l  158 (181)
                      +.+++|.++++++++.|+.+++.   .+ ..|+++++++|||||++||||+||++|.|++++|++++||    +.+.|++
T Consensus       101 ~ssl~v~~~~~lt~s~Dvl~~i~---~~-~~p~~~l~~lGYagW~~GQLE~Ei~~n~WL~~pA~~~~lF----~~~~edr  172 (194)
T COG1678         101 QSSLRVSDGLALTTSLDVLEAIA---AG-KGPEKALVALGYAGWAAGQLEEEIEDNDWLTVPADPEILF----DTPPEDR  172 (194)
T ss_pred             cccceecCCEEEEecHhHHHHHh---cc-CCCCceEEEEEecccccchhHHHHhhCCEEEecCCHHHhc----CCCHHHH
Confidence            67899999999998777766664   33 5789999999999999999999999999999999999996    4566999


Q ss_pred             HHHHHHHcCCChhhhhcCCCC
Q 047846          159 WEEILQLMGGHYSELSRKPKQ  179 (181)
Q Consensus       159 W~~~l~~~G~~~~~ls~~p~~  179 (181)
                      |.++++++|+++..||. |.+
T Consensus       173 w~~al~~lGi~~~~lst-~ag  192 (194)
T COG1678         173 WARALRRLGIDLALLST-PAG  192 (194)
T ss_pred             HHHHHHHcCCCHHHcCC-CcC
Confidence            99999999999999998 654

>PF02622 DUF179: Uncharacterized ACR, COG1678; InterPro: IPR003774 This entry describes proteins of unknown function

Probab=100.00  E-value=1.6e-48  Score=306.81  Aligned_cols=154  Identities=40%  Similarity=0.751  Sum_probs=129.6

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCccccc-ccccCCceeecCcccCCe-EEEEeCCCC-CC
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELA-TTFADCSLHFGGPLEASM-FLLKTGQSK-LP   79 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~~~~-~~~~~~~v~~GGPV~~~~-~~lh~~~~~-~~   79 (181)
                      +|++|+|||||||    +|+++||+|||||||++.++.++.+...... .++.+++||+||||++++ ++||+.... .+
T Consensus         5 ~d~~F~~sVVli~----~h~~~Ga~GlILNrp~~~~l~~~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~Lh~~~~~~~~   80 (161)
T PF02622_consen    5 NDPNFHRSVVLIC----EHDEEGAMGLILNRPTNITLSELLEELELLPISAFSDQPVYFGGPVEPDRGFVLHSIPDLEGP   80 (161)
T ss_dssp             TSTTTTTEEEEEE----EEETTEEEEEESSSEEEEEHHHHHHHTTCCSSTTCCCSEEEES-SEEEEEEEEEEEC-TTGCS
T ss_pred             CCCCcCceEEEEE----EECCCCcEEEEecCCCCCCHHHHHHhhccccccccccCeEEECCCcccCeEEEEEECCCCCCC
Confidence            6899999999999    8999999999999999988888765443221 235789999999999996 888876554 47


Q ss_pred             CceEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChHHHH
Q 047846           80 GFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLW  159 (181)
Q Consensus        80 ~~~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~~lW  159 (181)
                      ++.+|.+|+|+++  +.+.+.++++++ .++.+||||+|||||+|||||+||++|+|++++|++++||+   . +.+++|
T Consensus        81 ~s~~v~~gl~~~~--~~~~~~~~i~~~-~~~~~~~~f~GysgW~~gQLe~Ei~~g~W~~~~a~~~~vf~---~-~~~~~W  153 (161)
T PF02622_consen   81 GSIEVSPGLYLGG--SLDALEALIAEG-AGPEDFRFFLGYSGWGPGQLEDEIARGSWLVAPASPDIVFE---T-PPEELW  153 (161)
T ss_dssp             SEEECSSSEEEEE--STHHHHHHHTST-TSCSSEEEEEEEEEECTTHHHHHHHTTTEEEEE--HHHHCT---S-TSSHHH
T ss_pred             CceEEeCCeEEec--cHHHHHHHHhCC-CCCceEEEEEEECCCCHHHHHHHHHcCCEEEeeCCHHHhhC---C-CHHHHH
Confidence            8999999999997  666777678887 78999999999999999999999999999999999999963   3 348999


Q ss_pred             HHHHHHcC
Q 047846          160 EEILQLMG  167 (181)
Q Consensus       160 ~~~l~~~G  167 (181)
                      +++|++||
T Consensus       154 ~~~l~~~G  161 (161)
T PF02622_consen  154 REALRRLG  161 (161)
T ss_dssp             HHHHHCTT
T ss_pred             HHHHHHCc
Confidence            99999998

; PDB: 2DO8_A 2EW0_A 2GS5_A 2HRX_A 2AJ2_A 2HAF_A 2GZO_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
2gzo_A	195	Nmr Structure Of Upf0301 Protein So3346 From Shewan		3e-09
2ew0_A	192	X-Ray Crystal Structure Of Protein Q6ff54 From Acin		6e-09

>pdb|2GZO|A Chain A, Nmr Structure Of Upf0301 Protein So3346 From Shewanella Oneidensis: Northeast Structural Genomics Consortium Target Sor39 Length = 195

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 7   FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMK-----PTNHELATTFADCSLHFG 61
           FERTV+ L      H ++G  G+VIN+PL  ++  +      PT    A       +  G
Sbjct: 20  FERTVIYL----CEHDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMGSQVLMG 75
Query: 62  GPLEASM-FLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYA 120
           GP+     F+L T Q       E+  GL      S D   A+  K    P  F   +GYA
Sbjct: 76  GPVSQDRGFVLHTSQPYWANSTELGSGLML--TTSRDVLTAIGSKR--SPDKFLVALGYA 131
Query: 121 GWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRK 176
           GW  +QL +E+  + W        L+     D + E  W++  + +G    +LS +
Sbjct: 132 GWSKNQLEQELADNSWLTIPADHALLF----DINHEDRWQQASRSLGFEAWQLSTQ 183

>pdb|2EW0|A Chain A, X-Ray Crystal Structure Of Protein Q6ff54 From Acinetobacter Sp. Adp1. Northeast Structural Genomics Consortium Target Asr1 Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Query: 7   FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEA 66
           F  TV+ L     RH +EG  G++INRP   +IK +       A       +  GGPL  
Sbjct: 22  FANTVIYL----ARHDEEGAQGIIINRPAGIQIKELLNDLDIDADNVNPHEVLQGGPLRP 77
Query: 67  SM-FLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLD 125
              F+L TGQ        V   +C      + +A A   +GV +   ++  +GYA W  +
Sbjct: 78  EAGFVLHTGQPTWHSSIAVGENVCITTSKDILDAIAH-NEGVGR---YQIALGYASWGKN 133
Query: 126 QLREEIESDYWYVAACSSDLICGATSDTSSESLWEEI 162
           QL +EI    W +     DLI     D   ++ +++I
Sbjct: 134 QLEDEIARGDWLICDADXDLIFNLPYDDRWDAAYKKI 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
2gs5_A	198	Conserved hypothetical protein; corvnebacterium di	1e-40
2ew0_A	192	Hypothetical protein aciad0353; Q5FF54, ASR1, NESG	1e-38
2do8_A	188	UPF0301 protein HD_1794; NESG, GFT structral genom	9e-38
2haf_A	211	Putative translation repressor; alpha/beta, X-RAY	7e-37
2gzo_A	195	UPF0301 protein SO3346; GFT-protein structure, nes	2e-34

>2gs5_A Conserved hypothetical protein; corvnebacterium diphtheria, structural genomics, PSI; 1.50A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} SCOP: d.310.1.1 PDB: 2hrx_A Length = 198

 Score =  134 bits (340), Expect = 1e-40
 Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 10/172 (5%)

Query: 7   FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEA 66
           F R+V+L++     H +   FGV +       + ++ P      T     +L+ GGPL  
Sbjct: 32  FARSVILIIE----HSEYATFGVNLASRSDVAVFNVIPEWVPCVT--KPQALYIGGPLNQ 85

Query: 67  SMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQ 126
              +     ++      V        R  +    A  ++        R F G+A W   Q
Sbjct: 86  QSVVGVGVTAQGVDAARVDNLTRLANRLVMVNLGADPEEIKPLVSGMRLFAGHAEWAPGQ 145

Query: 127 LREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKPK 178
           L +EIE+  W+VA      +        S  +W ++++         S  P 
Sbjct: 146 LAQEIENGDWFVAPALPSDVT----APGSVDVWGDVMRRQPMPLPLYSTFPV 193

>2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1 Length = 192

 Score =  129 bits (327), Expect = 1e-38
 Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 13/172 (7%)

Query: 7   FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEA 66
           F  TV+ L R    H +EG  G++INRP   +IK +       A       +  GGPL  
Sbjct: 22  FANTVIYLAR----HDEEGAQGIIINRPAGIQIKELLNDLDIDADNVNPHEVLQGGPLRP 77

Query: 67  -SMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLD 125
            + F+L TGQ        V   +C      + +A A  +        ++  +GYA W  +
Sbjct: 78  EAGFVLHTGQPTWHSSIAVGENVCITTSKDILDAIAHNEG----VGRYQIALGYASWGKN 133

Query: 126 QLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKP 177
           QL +EI    W +     DLI     +   +  W+   + +G   + L+ + 
Sbjct: 134 QLEDEIARGDWLICDADMDLIF----NLPYDDRWDAAYKKIGVDRTWLASEI 181

>2do8_A UPF0301 protein HD_1794; NESG, GFT structral genomics, HDR14, structural genomics, PSI, protein structure initiative; NMR {Haemophilus ducreyi} SCOP: d.310.1.1 Length = 188

 Score =  127 bits (321), Expect = 9e-38
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 18/170 (10%)

Query: 7   FERTVVLLLRSGTRHPQEGPFGVVINRPLHKK----IKHMKPTNHELATTFADCSLHFGG 62
           F+RTV+ +      H   G  GV+IN P        +  M     +      D  +  GG
Sbjct: 21  FDRTVIYICE----HNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPRIYTQDQMVLNGG 76

Query: 63  PLEAS--MFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYA 120
           P+       +      +     +V   +      S D   +   +    P+ F   +G +
Sbjct: 77  PVNQDRGFIVHSKTDHEFTHSYKVTDDITLTT--SGDVLDSFGTQ--TAPEKFIVCLGCS 132

Query: 121 GWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHY 170
            W+  QL +EI  +YW ++  ++  +     +TS    W E  +++G   
Sbjct: 133 TWKPHQLEQEIAQNYWLLSEANNQTL----FETSYLDRWVEANEMLGISG 178

>2haf_A Putative translation repressor; alpha/beta, X-RAY crystallography, structural genomics, PSI, protein structure initiative; 2.88A {Vibrio cholerae} SCOP: d.310.1.1 PDB: 2aj2_A Length = 211

 Score =  126 bits (317), Expect = 7e-37
 Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 19/175 (10%)

Query: 7   FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHM------KPTNHELATTFADCSLHF 60
           F+R+V+ +      H Q+G  G++IN P+   +  M      +P   +         +  
Sbjct: 34  FKRSVIYICE----HNQDGAMGLMINAPIDITVGGMLKQVDIEPAYPQSHQENLKKPVFN 89

Query: 61  GGPLEASMFLLK-TGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
           GGP+      +    +       ++   +      S D    L  +   +P+ +   +GY
Sbjct: 90  GGPVSEDRGFILHRPRDHYESSMKMTDDIAVTT--SKDILTVLGTEA--EPEGYIVALGY 145

Query: 120 AGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELS 174
           +GW   QL  E+  + W       +LI     +T     W++ +Q +G   ++LS
Sbjct: 146 SGWSAGQLEVELTENSWLTIEADPELIF----NTPVHEKWQKAIQKLGISPAQLS 196

>2gzo_A UPF0301 protein SO3346; GFT-protein structure, nesgc, alpha-beta, structural genomics, PSI, protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.310.1.1 Length = 195

 Score =  119 bits (299), Expect = 2e-34
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 18/177 (10%)

Query: 7   FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHM-----KPTNHELATTFADCSLHFG 61
           FERTV+ L      H ++G  G+VIN+PL  ++  +      PT    A       +  G
Sbjct: 20  FERTVIYLCE----HDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMGSQVLMG 75

Query: 62  GPLEASM-FLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYA 120
           GP+     F+L T Q       E+  GL      S D   A+  K    P  F   +GYA
Sbjct: 76  GPVSQDRGFVLHTSQPYWANSTELGSGLMLTT--SRDVLTAIGSKR--SPDKFLVALGYA 131

Query: 121 GWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKP 177
           GW  +QL +E+  + W        L+     D + E  W++  + +G    +LS + 
Sbjct: 132 GWSKNQLEQELADNSWLTIPADHALLF----DINHEDRWQQASRSLGFEAWQLSTQA 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
2ew0_A	192	Hypothetical protein aciad0353; Q5FF54, ASR1, NESG	100.0
2gzo_A	195	UPF0301 protein SO3346; GFT-protein structure, nes	100.0
2gs5_A	198	Conserved hypothetical protein; corvnebacterium di	100.0
2haf_A	211	Putative translation repressor; alpha/beta, X-RAY	100.0
2do8_A	188	UPF0301 protein HD_1794; NESG, GFT structral genom	100.0

>2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1

Probab=100.00  E-value=6e-52  Score=333.72  Aligned_cols=165  Identities=26%  Similarity=0.432  Sum_probs=138.7

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCcccccccccCCceeecCcccCCe-EEEEeCCCCCCCc
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEASM-FLLKTGQSKLPGF   81 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~~~~~~~~~~~v~~GGPV~~~~-~~lh~~~~~~~~~   81 (181)
                      .|++|+|||||||    +|+++||||||||||++.+++++++.+.-....+.+.|||+||||++++ |+||+....++++
T Consensus        18 ~d~~F~rSVIli~----eH~~~Ga~GlIlNrP~~~~l~~ll~~l~~~~~~~~~~~v~~GGPV~~~rgfvLH~~~~~~~~s   93 (192)
T 2ew0_A           18 ADDFFANTVIYLA----RHDEEGAQGIIINRPAGIQIKELLNDLDIDADNVNPHEVLQGGPLRPEAGFVLHTGQPTWHSS   93 (192)
T ss_dssp             CCTTTTTCEEEEE----EEETTEEEEEECSCEEEEEHHHHHHHTTCCCTTCCCCEEEECCSEEEEEEEEEEESCCCSSSE
T ss_pred             CCCCccceEEEEE----EeCCCceeEEEecCCCCCCHHHHHHhhCcccccCCCCeeEECCCcCCCcEEEEEeCCCCCCCc
Confidence            3899999999999    8999999999999999888888765432111112378999999999998 8999876667899


Q ss_pred             eEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChHHHHHH
Q 047846           82 EEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEE  161 (181)
Q Consensus        82 ~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~~lW~~  161 (181)
                      .+|.+|+|++++.|+.+++   .++ ..|+++|||+|||||+|||||+||++|+|++++|++++||+    .+.+++|++
T Consensus        94 ~~v~~gv~lt~s~d~l~~i---~~~-~~p~~~~~flGYaGW~~GQLe~Ei~~n~Wl~~~a~~~~lf~----~~~~~~W~~  165 (192)
T 2ew0_A           94 IAVGENVCITTSKDILDAI---AHN-EGVGRYQIALGYASWGKNQLEDEIARGDWLICDADMDLIFN----LPYDDRWDA  165 (192)
T ss_dssp             EEEETTEEEECSSHHHHHH---HTT-CSCCSEEEEEEEEEECTTHHHHHHHTTCCEEEECCHHHHTT----SCGGGHHHH
T ss_pred             eEecCCeeeeCCHHHHHHH---hcC-CCCccEEEEEeecCCCHHHHHHHHHcCCEEEecCCHHHhhC----CCHHHHHHH
Confidence            9999999999877766554   355 57899999999999999999999999999999999999963    455999999


Q ss_pred             HHHHcCCChhhhhcCCCC
Q 047846          162 ILQLMGGHYSELSRKPKQ  179 (181)
Q Consensus       162 ~l~~~G~~~~~ls~~p~~  179 (181)
                      +|+++|++|+.||+.|+.
T Consensus       166 al~~lG~~~~~ls~~~~~  183 (192)
T 2ew0_A          166 AYKKIGVDRTWLASEIGH  183 (192)
T ss_dssp             HHHHGGGSSCCCCC----
T ss_pred             HHHHhCCCHHHHHhhhhh
Confidence            999999999999999875

>2gzo_A UPF0301 protein SO3346; GFT-protein structure, nesgc, alpha-beta, structural genomics, PSI, protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.310.1.1

Probab=100.00  E-value=1.5e-51  Score=332.12  Aligned_cols=166  Identities=25%  Similarity=0.448  Sum_probs=141.7

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCccc-cc--c--cccCCceeecCcccCCe-EEEEeCCC
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHE-LA--T--TFADCSLHFGGPLEASM-FLLKTGQS   76 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~~-~~--~--~~~~~~v~~GGPV~~~~-~~lh~~~~   76 (181)
                      .|++|+|||||||    +|+++||||||||||++.+++++++.+.. ..  .  .+.++|||+||||++++ |+||+...
T Consensus        16 ~d~~F~rSVVli~----eH~~~Ga~GlIiNrP~~~~l~~ll~~l~~~~~~~~~~~~~~~~v~~GGPV~~~rgfvLH~~~~   91 (195)
T 2gzo_A           16 DDTFFERTVIYLC----EHDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMGSQVLMGGPVSQDRGFVLHTSQP   91 (195)
T ss_dssp             CSCSSSSEEEEEC----CCBTTBCCEEECSSCCCBCHHHHHHHHTSCSSCCCCCCCCCSCBEESCSBTTTSCCEEEECCS
T ss_pred             CCCCccccEEEEE----EeCCCceeEEEecCCCCCcHHHHHHhhCcccccccccccCCCeEEECCCcCCCcEEEEEeCCC
Confidence            3899999999999    89999999999999998888777543211 00  0  13578999999999998 99999766


Q ss_pred             CCCCceEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChH
Q 047846           77 KLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSE  156 (181)
Q Consensus        77 ~~~~~~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~  156 (181)
                      .++++.+|.+|+|++++.|+.+++   .++ ..|+++|||+|||||+|||||+||++|+|++++|++++||+    .+.+
T Consensus        92 ~~~~s~~v~~gv~lt~s~dil~~i---~~~-~~p~~~~~flGYaGW~~GQLE~Ei~~n~Wl~~~a~~~~lf~----~~~~  163 (195)
T 2gzo_A           92 YWANSTELGSGLMLTTSRDVLTAI---GSK-RSPDKFLVALGYAGWSKNQLEQELADNSWLTIPADHALLFD----INHE  163 (195)
T ss_dssp             CSSSCCCSSSSEEEECTTHHHHHH---TSC-CCSSCEECEECBCTHHHHCCHHHHHHHTCEEEECCHHHHTT----SCSS
T ss_pred             CCCCceEecCCeeeeCCHHHHHHH---hcC-CCCccEEEEEeecCCCHHHHHHHHHcCCEEEecCCHHHhcC----CCHH
Confidence            778999999999999877666544   355 57899999999999999999999999999999999999963    4459


Q ss_pred             HHHHHHHHHcCCChhhhhcCCCCC
Q 047846          157 SLWEEILQLMGGHYSELSRKPKQD  180 (181)
Q Consensus       157 ~lW~~~l~~~G~~~~~ls~~p~~~  180 (181)
                      ++|+++|+++|++|+.||+.|+..
T Consensus       164 ~~W~~al~~lG~~~~~ls~~~~~~  187 (195)
T 2gzo_A          164 DRWQQASRSLGFEAWQLSTQAGHA  187 (195)
T ss_dssp             HHHHHHHHCCCCCCCCCCCCCCCC
T ss_pred             HHHHHHHHHhCCCHHHHHhhhHHH
Confidence            999999999999999999998753

>2gs5_A Conserved hypothetical protein; corvnebacterium diphtheria, structural genomics, PSI; 1.50A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} SCOP: d.310.1.1 PDB: 2hrx_A

Probab=100.00  E-value=4e-50  Score=324.50  Aligned_cols=158  Identities=23%  Similarity=0.371  Sum_probs=136.3

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCcccccccccCCceeecCcccCCe-EEEEeCCCCC---
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEASM-FLLKTGQSKL---   78 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~~~~~~~~~~~v~~GGPV~~~~-~~lh~~~~~~---   78 (181)
                      .|++|+|||||||    +|+++||||||||||++.+++++++.+...  .+.+.|||+||||++++ |+||+....+   
T Consensus        28 ~d~~F~rSVVli~----eH~~~Ga~GlIlNrp~~~~l~~ll~~~~~~--~~~~~~v~~GGPV~~~~gfvLH~~~~~~~~~  101 (198)
T 2gs5_A           28 ESEDFARSVILII----EHSEYATFGVNLASRSDVAVFNVIPEWVPC--VTKPQALYIGGPLNQQSVVGVGVTAQGVDAA  101 (198)
T ss_dssp             CCTTTTTCEEEEE----EECSSCEEEEESSCEEEEEGGGTCGGGGGG--CCSSCEEEECCSEEEEEEEEEEEECTTCCGG
T ss_pred             CCCCccccEEEEE----EeCCCCeeEEEecCCCCCCHHHHHHhhccc--ccCCCeEEECCCccCCeEEEEEecCcccccc
Confidence            3899999999999    899999999999999999999988765422  23578999999999998 8999865455   


Q ss_pred             -CCceEeeCc----eEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCC
Q 047846           79 -PGFEEVIPG----LCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDT  153 (181)
Q Consensus        79 -~~~~~v~~g----l~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~  153 (181)
                       .++.+|.+|    +|+++  +.+.+.+++       +++|||+|||||+|||||+||++|+|++++|++++||+    .
T Consensus       102 ~~~s~~v~~g~~~~v~l~~--s~d~l~~~~-------~~~~~flGYaGW~~GQLe~Ei~~n~Wl~~~a~~~~lf~----~  168 (198)
T 2gs5_A          102 RVDNLTRLANRLVMVNLGA--DPEEIKPLV-------SGMRLFAGHAEWAPGQLAQEIENGDWFVAPALPSDVTA----P  168 (198)
T ss_dssp             GCTTEEEEETTEEEECTTS--CHHHHGGGE-------EEEEEEEEEEEECTTHHHHHHHTTSEEEEECCHHHHHC----C
T ss_pred             CCCceEecCCCceeEEEcC--CHHHHHHHh-------hccEEEeeEcCCChHHHHHHHHcCCEEEecCCHHHhcC----C
Confidence             789999999    99997  454443321       78999999999999999999999999999999999973    4


Q ss_pred             ChHHHHHHHHHHcCCChhhhhcCCCC
Q 047846          154 SSESLWEEILQLMGGHYSELSRKPKQ  179 (181)
Q Consensus       154 ~~~~lW~~~l~~~G~~~~~ls~~p~~  179 (181)
                      +.+++|+++|+++|++|+.||++|+|
T Consensus       169 ~~~~~W~~al~~lG~~~~~ls~~p~d  194 (198)
T 2gs5_A          169 GSVDVWGDVMRRQPMPLPLYSTFPVN  194 (198)
T ss_dssp             TTCCHHHHHHHTSSTTGGGGCCCCC-
T ss_pred             CHHHHHHHHHHHcCCCHHHhcCCCCC
Confidence            44999999999999999999999976

>2haf_A Putative translation repressor; alpha/beta, X-RAY crystallography, structural genomics, PSI, protein structure initiative; 2.88A {Vibrio cholerae} SCOP: d.310.1.1 PDB: 2aj2_A

Probab=100.00  E-value=1.8e-50  Score=329.20  Aligned_cols=163  Identities=21%  Similarity=0.415  Sum_probs=133.0

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCccc-cc--cc---ccCCceeecCcccCCe-EEEEeCC
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHE-LA--TT---FADCSLHFGGPLEASM-FLLKTGQ   75 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~~-~~--~~---~~~~~v~~GGPV~~~~-~~lh~~~   75 (181)
                      .|++|+|||||||    +|+++||||||||||++.+++++++.+.. ..  ..   +.+.|||+||||++++ |+||+..
T Consensus        30 ~D~~F~rSVVlic----eH~~~GamGlIiNrP~~~~l~~ll~~l~~~~~~~~~~~~~~~~~v~~GGPV~~~rgfvLH~~~  105 (211)
T 2haf_A           30 KDPYFKRSVIYIC----EHNQDGAMGLMINAPIDITVGGMLKQVDIEPAYPQSHQENLKKPVFNGGPVSEDRGFILHRPR  105 (211)
T ss_dssp             CSGGGTTCEEEEE----EEETTEEEEEESSCEEEEEHHHHHHHTTCCCSSCCCCCSGGGSEEEECCSEEEEEEEEEECCC
T ss_pred             CCCCcCccEEEEE----EeCCCCeeEEEecCCCCCcHHHHHHhhccccccccccccccCCeEEECCCccCCcEEEEEecC
Confidence            3899999999999    89999999999999998888877653321 00  00   3477999999999998 8999876


Q ss_pred             CCCCCceEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCCh
Q 047846           76 SKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSS  155 (181)
Q Consensus        76 ~~~~~~~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~  155 (181)
                      ..++++.+|.+|+|++++.|+.+++   .++ ..|+++|||+|||||+|||||+||++|+|++++|++++||    +.+.
T Consensus       106 ~~~~~s~~v~~gv~lt~s~dil~~i---~~~-~~p~~~~~flGYaGW~~GQLE~Ei~~n~Wl~~~a~~~~lF----~~~~  177 (211)
T 2haf_A          106 DHYESSMKMTDDIAVTTSKDILTVL---GTE-AEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPELIF----NTPV  177 (211)
T ss_dssp             SCCSSEEECSSSCEEECSGGGGGGT---TST-TSCSSEEEEEEEEEEETTHHHHHHHTTSEEEEECCHHHHH----SSCG
T ss_pred             CCCCCceEecCCeeecCCHHHHHHH---hcC-CCCccEEEEeeecCCCHHHHHHHHHcCCEEEecCCHHHhc----CCCH
Confidence            6778999999999999877765443   345 5789999999999999999999999999999999999997    3456


Q ss_pred             HHHHHHHHHHcCCChhhhhcCC
Q 047846          156 ESLWEEILQLMGGHYSELSRKP  177 (181)
Q Consensus       156 ~~lW~~~l~~~G~~~~~ls~~p  177 (181)
                      +++|+++|+++|++|+.||+..
T Consensus       178 ~~~W~~al~~lG~d~~~ls~~~  199 (211)
T 2haf_A          178 HEKWQKAIQKLGISPAQLSSDA  199 (211)
T ss_dssp             GGHHHHHHHHTSCCC-------
T ss_pred             HHHHHHHHHHhCCCHHHHhhhc
Confidence            9999999999999999999764

>2do8_A UPF0301 protein HD_1794; NESG, GFT structral genomics, HDR14, structural genomics, PSI, protein structure initiative; NMR {Haemophilus ducreyi} SCOP: d.310.1.1

Probab=100.00  E-value=1.2e-49  Score=319.47  Aligned_cols=157  Identities=20%  Similarity=0.389  Sum_probs=132.8

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCccc-c---cccccCCceeecCcccCCe-EEEEe-CCC
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHE-L---ATTFADCSLHFGGPLEASM-FLLKT-GQS   76 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~~-~---~~~~~~~~v~~GGPV~~~~-~~lh~-~~~   76 (181)
                      .|++|+|||||||    +|+++||||||||||++.+++++++.+.. .   ...+.+.|||+||||++++ |+||+ ...
T Consensus        17 ~d~~F~rSVVli~----eH~~~Ga~GlIlNrp~~~~l~~ll~~~~~~~~~~~~~~~~~~v~~GGPV~~~rgfvLH~~~~~   92 (188)
T 2do8_A           17 DDEYFDRTVIYIC----EHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPRIYTQDQMVLNGGPVNQDRGFIVHSKTDH   92 (188)
T ss_dssp             TTCCSSCCCCEEE----EEETTEEEEECSCCEEEEEHHHHHHHTTCCCCCCGGGCCCCEEEECCSEEEEEEEEEECCCTT
T ss_pred             CCCCcCccEEEEE----EeCCCCceEEEEeCCCCCCHHHHHHhhcccccccccccCCCeEEECCCccCCcEEEEEeCCCC
Confidence            3899999999999    89999999999999998888877553321 0   0013578999999999998 89998 455


Q ss_pred             CCCCceEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChH
Q 047846           77 KLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSE  156 (181)
Q Consensus        77 ~~~~~~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~  156 (181)
                      .++++.+|.+|+|++++.|+.+++   .++ ..|+++|||+|||||+|||||+||++|+|++++|++++||+    .+.+
T Consensus        93 ~~~~s~~v~~gv~lt~s~dil~~i---~~~-~~p~~~~~~lGYaGW~~GQLe~Ei~~n~Wl~~~a~~~~lf~----~~~~  164 (188)
T 2do8_A           93 EFTHSYKVTDDITLTTSGDVLDSF---GTQ-TAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTLFE----TSYL  164 (188)
T ss_dssp             CCSSEEESSSSCEEECSSHHHHHT---TST-TCCSCEEEEEEEEEECTTHHHHHHHTTSSEEEECCTHHHHT----TTSS
T ss_pred             CCCCcEEecCCeeecCCHHHHHHH---hcC-CCCccEEEEEeecCCCHHHHHHHHHcCCEEEecCCHHHhhC----CCHH
Confidence            678899999999999876665444   355 57899999999999999999999999999999999999973    4449


Q ss_pred             HHHHHHHHHcCCChh
Q 047846          157 SLWEEILQLMGGHYS  171 (181)
Q Consensus       157 ~lW~~~l~~~G~~~~  171 (181)
                      ++|+++|+++|++|.
T Consensus       165 ~~W~~al~~lG~~~~  179 (188)
T 2do8_A          165 DRWVEANEMLGISGI  179 (188)
T ss_dssp             CCSSHHHHTTTSCCC
T ss_pred             HHHHHHHHHcCCCCC
Confidence            999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d2gs5a1	193	d.310.1.1 (A:1-193) Hypothetical protein DIP2367 {	2e-28
d2ew0a1	175	d.310.1.1 (A:5-179) Hypothetical protein ACIAD0353	8e-27
d2gzoa1	187	d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Sh	7e-24
d2do8a1	186	d.310.1.1 (A:1-186) Hypothetical protein HD1794 {H	3e-23
d2hafa1	178	d.310.1.1 (A:15-192) Hypothetical protein VC0467 {	1e-22

>d2gs5a1 d.310.1.1 (A:1-193) Hypothetical protein DIP2367 {Corynebacterium diphtheriae [TaxId: 1717]} Length = 193

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein DIP2367
species: Corynebacterium diphtheriae [TaxId: 1717]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 10/171 (5%)

Query: 7   FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEA 66
           F R+V+L+      H +   FGV +       + ++ P            +L+ GGPL  
Sbjct: 32  FARSVILI----IEHSEYATFGVNLASRSDVAVFNVIPEWVPC--VTKPQALYIGGPLNQ 85

Query: 67  SMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQ 126
              +     ++      V        R  +    A  ++        R F G+A W   Q
Sbjct: 86  QSVVGVGVTAQGVDAARVDNLTRLANRLVMVNLGADPEEIKPLVSGMRLFAGHAEWAPGQ 145

Query: 127 LREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKP 177
           L +EIE+  W+VA      +        S  +W ++++         S  P
Sbjct: 146 LAQEIENGDWFVAPALPSDVT----APGSVDVWGDVMRRQPMPLPLYSTFP 192

>d2ew0a1 d.310.1.1 (A:5-179) Hypothetical protein ACIAD0353 {Acinetobacter sp. ADP1 [TaxId: 62977]} Length = 175

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein ACIAD0353
species: Acinetobacter sp. ADP1 [TaxId: 62977]

 Score = 98.0 bits (243), Expect = 8e-27
 Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 13/169 (7%)

Query: 7   FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEA 66
           F  TV+ L     RH +EG  G++INRP   +IK +       A       +  GGPL  
Sbjct: 18  FANTVIYL----ARHDEEGAQGIIINRPAGIQIKELLNDLDIDADNVNPHEVLQGGPLRP 73

Query: 67  SM-FLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLD 125
              F+L TGQ        V   +C      + +A A  +        ++  +GYA W  +
Sbjct: 74  EAGFVLHTGQPTWHSSIAVGENVCITTSKDILDAIAHNEG----VGRYQIALGYASWGKN 129

Query: 126 QLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELS 174
           QL +EI    W +     DLI     +   +  W+   + +G   + L+
Sbjct: 130 QLEDEIARGDWLICDADMDLIF----NLPYDDRWDAAYKKIGVDRTWLA 174

>d2gzoa1 d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Shewanella oneidensis [TaxId: 70863]} Length = 187

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypotheical protein SO3346
species: Shewanella oneidensis [TaxId: 70863]

 Score = 90.6 bits (224), Expect = 7e-24
 Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 18/174 (10%)

Query: 7   FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHM-----KPTNHELATTFADCSLHFG 61
           FERTV+ L      H ++G  G+VIN+PL  ++  +      PT    A       +  G
Sbjct: 20  FERTVIYL----CEHDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMGSQVLMG 75

Query: 62  GPLEAS-MFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYA 120
           GP+     F+L T Q       E+  GL       +  A          P  F   +GYA
Sbjct: 76  GPVSQDRGFVLHTSQPYWANSTELGSGLMLTTSRDVLTAIG----SKRSPDKFLVALGYA 131

Query: 121 GWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHYSELS 174
           GW  +QL +E+  + W        L+     D + E  W++  + +G    +LS
Sbjct: 132 GWSKNQLEQELADNSWLTIPADHALL----FDINHEDRWQQASRSLGFEAWQLS 181

>d2do8a1 d.310.1.1 (A:1-186) Hypothetical protein HD1794 {Haemophilus ducreyi [TaxId: 730]} Length = 186

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein HD1794
species: Haemophilus ducreyi [TaxId: 730]

 Score = 89.1 bits (220), Expect = 3e-23
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 18/170 (10%)

Query: 7   FERTVVLLLRSGTRHPQEGPFGVVINRPLH----KKIKHMKPTNHELATTFADCSLHFGG 62
           F+RTV+ +      H   G  GV+IN P      + +  M     +      D  +  GG
Sbjct: 21  FDRTVIYI----CEHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPRIYTQDQMVLNGG 76

Query: 63  PLEASMFLLKT--GQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYA 120
           P+      +       +     +V   +       + ++          P+ F   +G +
Sbjct: 77  PVNQDRGFIVHSKTDHEFTHSYKVTDDITLTTSGDVLDSFGTQTA----PEKFIVCLGCS 132

Query: 121 GWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMGGHY 170
            W+  QL +EI  +YW ++  ++  +     +TS    W E  +++G   
Sbjct: 133 TWKPHQLEQEIAQNYWLLSEANNQTLF----ETSYLDRWVEANEMLGISG 178

>d2hafa1 d.310.1.1 (A:15-192) Hypothetical protein VC0467 {Vibrio cholerae [TaxId: 666]} Length = 178

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein VC0467
species: Vibrio cholerae [TaxId: 666]

 Score = 87.2 bits (215), Expect = 1e-22
 Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 19/168 (11%)

Query: 7   FERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHM------KPTNHELATTFADCSLHF 60
           F+R+V+ +      H Q+G  G++IN P+   +  M      +P   +         +  
Sbjct: 20  FKRSVIYI----CEHNQDGAMGLMINAPIDITVGGMLKQVDIEPAYPQSHQENLKKPVFN 75

Query: 61  GGPLEA-SMFLLKTGQSKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGY 119
           GGP+     F+L   +       ++   +        D    L  +   +P+ +   +GY
Sbjct: 76  GGPVSEDRGFILHRPRDHYESSMKMTDDIAVTTSK--DILTVLGTEA--EPEGYIVALGY 131

Query: 120 AGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEEILQLMG 167
           +GW   QL  E+  + W       +LI     +T     W++ +Q +G
Sbjct: 132 SGWSAGQLEVELTENSWLTIEADPELIF----NTPVHEKWQKAIQKLG 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d2ew0a1	175	Hypothetical protein ACIAD0353 {Acinetobacter sp.	100.0
d2gzoa1	187	Hypotheical protein SO3346 {Shewanella oneidensis	100.0
d2gs5a1	193	Hypothetical protein DIP2367 {Corynebacterium diph	100.0
d2hafa1	178	Hypothetical protein VC0467 {Vibrio cholerae [TaxI	100.0
d2do8a1	186	Hypothetical protein HD1794 {Haemophilus ducreyi [	100.0

>d2ew0a1 d.310.1.1 (A:5-179) Hypothetical protein ACIAD0353 {Acinetobacter sp. ADP1 [TaxId: 62977]}

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein ACIAD0353
species: Acinetobacter sp. ADP1 [TaxId: 62977]

Probab=100.00  E-value=2.9e-48  Score=306.08  Aligned_cols=161  Identities=27%  Similarity=0.448  Sum_probs=135.1

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCcccccccccCCceeecCcccCCe-EEEEeCCCCCCCc
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEASM-FLLKTGQSKLPGF   81 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~~~~~~~~~~~v~~GGPV~~~~-~~lh~~~~~~~~~   81 (181)
                      .|++|+|||||||    +|+++||+|||||||++.++.++............+.+||.||||+++. ++||+......++
T Consensus        14 ~d~~F~~SVIli~----~h~~~Ga~G~IlNkp~~~~l~~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~Lh~~~~~~~~~   89 (175)
T d2ew0a1          14 ADDFFANTVIYLA----RHDEEGAQGIIINRPAGIQIKELLNDLDIDADNVNPHEVLQGGPLRPEAGFVLHTGQPTWHSS   89 (175)
T ss_dssp             CCTTTTTCEEEEE----EEETTEEEEEECSCEEEEEHHHHHHHTTCCCTTCCCCEEEECCSEEEEEEEEEEESCCCSSSE
T ss_pred             CCCCcCceEEEEE----EECCCceEEEEecCCcccchhhhccccccccccccccceEecCCcccceeEEEeccCCCcccc
Confidence            5789999999999    8999999999999999988877654321111223467899999999998 8889877777889


Q ss_pred             eEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChHHHHHH
Q 047846           82 EEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEE  161 (181)
Q Consensus        82 ~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~~lW~~  161 (181)
                      .++.+++|++.+.++.++   +..+ ..|.++|+|+|||||+|||||+||++|+|++++|+.++||+   .. .+++|++
T Consensus        90 ~~~~~~~~~~~~~~~l~~---i~~~-~~p~~~r~f~GysGW~~gQLe~Ei~~~~W~v~~~~~~~iF~---~~-~~~~W~~  161 (175)
T d2ew0a1          90 IAVGENVCITTSKDILDA---IAHN-EGVGRYQIALGYASWGKNQLEDEIARGDWLICDADMDLIFN---LP-YDDRWDA  161 (175)
T ss_dssp             EEEETTEEEECSSHHHHH---HHTT-CSCCSEEEEEEEEEECTTHHHHHHHTTCCEEEECCHHHHTT---SC-GGGHHHH
T ss_pred             ccccccccccchhhHHhh---hhhh-ccchhheeeeeecccCHHHHHHHHHcCCEEEccCCHHHhhC---CC-HHHHHHH
Confidence            999999999975444433   4444 47889999999999999999999999999999999999963   33 4999999


Q ss_pred             HHHHcCCChhhhhc
Q 047846          162 ILQLMGGHYSELSR  175 (181)
Q Consensus       162 ~l~~~G~~~~~ls~  175 (181)
                      +++++|++|+.||+
T Consensus       162 ~l~~~G~d~~~ls~  175 (175)
T d2ew0a1         162 AYKKIGVDRTWLAS  175 (175)
T ss_dssp             HHHHGGGSSCCCCC
T ss_pred             HHHHhCCCHHHccC
Confidence            99999999999985

>d2gzoa1 d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Shewanella oneidensis [TaxId: 70863]}

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypotheical protein SO3346
species: Shewanella oneidensis [TaxId: 70863]

Probab=100.00  E-value=1.1e-46  Score=299.77  Aligned_cols=163  Identities=26%  Similarity=0.459  Sum_probs=135.2

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCcc-----cccccccCCceeecCcccCCe-EEEEeCCC
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNH-----ELATTFADCSLHFGGPLEASM-FLLKTGQS   76 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~-----~~~~~~~~~~v~~GGPV~~~~-~~lh~~~~   76 (181)
                      +|++|+|||||||    +|+++||+|||||||++.++.++.....     .......+.|||.||||++++ +++|+...
T Consensus        16 ~d~~F~~SVIli~----eh~~~Ga~GlIlNkp~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~lh~~~~   91 (187)
T d2gzoa1          16 DDTFFERTVIYLC----EHDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMGSQVLMGGPVSQDRGFVLHTSQP   91 (187)
T ss_dssp             CSCSSSSEEEEEC----CCBTTBCCEEECSSCCCBCHHHHHHHHTSCSSCCCCCCCCCSCBEESCSBTTTSCCEEEECCS
T ss_pred             CCCCcCceEEEEE----EeCCCceEEEEecCccCCcHHHHHhhccCcccccccccccCcceeecccccCCcceeeecccc
Confidence            5789999999999    8999999999999999988777643211     111222467999999999998 88888777


Q ss_pred             CCCCceEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChH
Q 047846           77 KLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSE  156 (181)
Q Consensus        77 ~~~~~~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~  156 (181)
                      ....+.++.+++|++.+.+..++   +..+ ..|.++|||+|||||+|||||+||++|+|++++|+.++||+   ..+ +
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~---l~~~-~~p~~~~~f~GysGW~~gQLe~Ei~~~~W~~~~~~~~~iF~---~~~-~  163 (187)
T d2gzoa1          92 YWANSTELGSGLMLTTSRDVLTA---IGSK-RSPDKFLVALGYAGWSKNQLEQELADNSWLTIPADHALLFD---INH-E  163 (187)
T ss_dssp             CSSSCCCSSSSEEEECTTHHHHH---HTSC-CCSSCEECEECBCTHHHHCCHHHHHHHTCEEEECCHHHHTT---SCS-S
T ss_pred             ccccceeecccccccCcHHHHHH---Hhhc-cCCceeeeehhhhccCHHHHHhhhccCCEEEecCCHHHhhC---CCH-H
Confidence            77888999999999874443333   3343 67899999999999999999999999999999999999963   344 8


Q ss_pred             HHHHHHHHHcCCChhhhhcCC
Q 047846          157 SLWEEILQLMGGHYSELSRKP  177 (181)
Q Consensus       157 ~lW~~~l~~~G~~~~~ls~~p  177 (181)
                      ++|++++++||++|+.+|...
T Consensus       164 ~~W~~~l~~lG~~~~~ls~~~  184 (187)
T d2gzoa1         164 DRWQQASRSLGFEAWQLSTQA  184 (187)
T ss_dssp             HHHHHHHHCCCCCCCCCCCCC
T ss_pred             HHHHHHHHHcCCCHHHhCCcc
Confidence            999999999999999999875

>d2gs5a1 d.310.1.1 (A:1-193) Hypothetical protein DIP2367 {Corynebacterium diphtheriae [TaxId: 1717]}

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein DIP2367
species: Corynebacterium diphtheriae [TaxId: 1717]

Probab=100.00  E-value=2.8e-47  Score=304.67  Aligned_cols=165  Identities=21%  Similarity=0.260  Sum_probs=126.6

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCcccccccccCCceeecCcccCCe-EEEEeCCCCCCCc
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELATTFADCSLHFGGPLEASM-FLLKTGQSKLPGF   81 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~~~~~~~~~~~v~~GGPV~~~~-~~lh~~~~~~~~~   81 (181)
                      +|++|+|||||||    +|+++||+|||||||++.++.++.......  ...+.+||.||||+++. +++|.... ..++
T Consensus        28 ~d~~F~~SVIli~----eH~~~Ga~GlIlNkp~~~~~~~~~~~~~~~--~~~~~~v~~GGPV~~~~~~~lh~~~~-~~~~  100 (193)
T d2gs5a1          28 ESEDFARSVILII----EHSEYATFGVNLASRSDVAVFNVIPEWVPC--VTKPQALYIGGPLNQQSVVGVGVTAQ-GVDA  100 (193)
T ss_dssp             CCTTTTTCEEEEE----EECSSCEEEEESSCEEEEEGGGTCGGGGGG--CCSSCEEEECCSEEEEEEEEEEEECT-TCCG
T ss_pred             CCCCcCccEEEEE----EeCCCceEEEEeeccccccHHHHhhhhhhc--cccCceEecCccccCCceEEeCccCC-CCCc
Confidence            4799999999999    899999999999999999888877654322  13578999999999998 67776543 3334


Q ss_pred             eEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChHHHHHH
Q 047846           82 EEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLWEE  161 (181)
Q Consensus        82 ~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~~lW~~  161 (181)
                      ..+...++++....+.......+..+..+.++|||+|||||+|||||+||++|+|++++|++++||+   .++ +++|++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~flGysGW~pGQLe~EI~~g~Wlv~~~~~~~iF~---~~~-~~~W~~  176 (193)
T d2gs5a1         101 ARVDNLTRLANRLVMVNLGADPEEIKPLVSGMRLFAGHAEWAPGQLAQEIENGDWFVAPALPSDVTA---PGS-VDVWGD  176 (193)
T ss_dssp             GGCTTEEEEETTEEEECTTSCHHHHGGGEEEEEEEEEEEEECTTHHHHHHHTTSEEEEECCHHHHHC---CTT-CCHHHH
T ss_pred             ccccCceEecCcchhhhcccCcccccccccceEEEEEEeccCcHHHHHHHHcCcEEEccCCHHHhcC---CCH-HHHHHH
Confidence            4444555554321111111111111235678999999999999999999999999999999999963   344 899999


Q ss_pred             HHHHcCCChhhhhcCCC
Q 047846          162 ILQLMGGHYSELSRKPK  178 (181)
Q Consensus       162 ~l~~~G~~~~~ls~~p~  178 (181)
                      +|++||++|+.||++|-
T Consensus       177 ~l~~lG~~~~~~s~~P~  193 (193)
T d2gs5a1         177 VMRRQPMPLPLYSTFPV  193 (193)
T ss_dssp             HHHTSSTTGGGGCCCCC
T ss_pred             HHHHcCCCHHHHcCCCC
Confidence            99999999999999993

>d2hafa1 d.310.1.1 (A:15-192) Hypothetical protein VC0467 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein VC0467
species: Vibrio cholerae [TaxId: 666]

Probab=100.00  E-value=4.1e-46  Score=294.27  Aligned_cols=156  Identities=20%  Similarity=0.412  Sum_probs=128.4

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCc------ccccccccCCceeecCcccCCe-EEEEeCC
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTN------HELATTFADCSLHFGGPLEASM-FLLKTGQ   75 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~------~~~~~~~~~~~v~~GGPV~~~~-~~lh~~~   75 (181)
                      +|++|+|||||||    +|+++||+|||||||++.++.++..+.      ........+.|||.||||++++ ++||+..
T Consensus        16 ~d~~F~~SVIli~----eh~~~Ga~GlIlNkp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~Lh~~~   91 (178)
T d2hafa1          16 KDPYFKRSVIYIC----EHNQDGAMGLMINAPIDITVGGMLKQVDIEPAYPQSHQENLKKPVFNGGPVSEDRGFILHRPR   91 (178)
T ss_dssp             CSGGGTTCEEEEE----EEETTEEEEEESSCEEEEEHHHHHHHTTCCCSSCCCCCSGGGSEEEECCSEEEEEEEEEECCC
T ss_pred             CCCCcCceEEEEE----EECCCcEEEEEEcCcccccHHHHHhhhcccccccccchhccccceEecccccCCceEEEecCC
Confidence            5799999999999    899999999999999988776654321      1111223467899999999998 7888877


Q ss_pred             CCCCCceEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCCh
Q 047846           76 SKLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSS  155 (181)
Q Consensus        76 ~~~~~~~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~  155 (181)
                      ...+.+.++.++++++.+.++.++   +..+ ..|+++|||+|||||+|||||+||++|+|++++|++++||+    .+.
T Consensus        92 ~~~~~~~~v~~~~~~~~~~~~~~~---l~~~-~~p~~~~~f~GysGW~~gQLe~Ei~~~sW~v~~~~~~~if~----~~~  163 (178)
T d2hafa1          92 DHYESSMKMTDDIAVTTSKDILTV---LGTE-AEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPELIFN----TPV  163 (178)
T ss_dssp             SCCSSEEECSSSCEEECSGGGGGG---TTST-TSCSSEEEEEEEEEEETTHHHHHHHTTSEEEEECCHHHHHS----SCG
T ss_pred             CCCCCcceecCcccccchhhHHHH---HhcC-cchhhhHHhhhhcccCHHHHHHHHHcCCEEEecCCHHHhcC----CCH
Confidence            777889999999999875444333   3344 67899999999999999999999999999999999999973    344


Q ss_pred             HHHHHHHHHHcCCCh
Q 047846          156 ESLWEEILQLMGGHY  170 (181)
Q Consensus       156 ~~lW~~~l~~~G~~~  170 (181)
                      +++|++++++||+++
T Consensus       164 ~~~W~~~l~~lGidp  178 (178)
T d2hafa1         164 HEKWQKAIQKLGISP  178 (178)
T ss_dssp             GGHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHcCCCC
Confidence            899999999999985

>d2do8a1 d.310.1.1 (A:1-186) Hypothetical protein HD1794 {Haemophilus ducreyi [TaxId: 730]}

class: Alpha and beta proteins (a+b)
fold: VC0467-like
superfamily: VC0467-like
family: VC0467-like
domain: Hypothetical protein HD1794
species: Haemophilus ducreyi [TaxId: 730]

Probab=100.00  E-value=3e-46  Score=297.16  Aligned_cols=156  Identities=19%  Similarity=0.385  Sum_probs=127.2

Q ss_pred             CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCcc----cccccccCCceeecCcccCCe-EEEEeCC-C
Q 047846            3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNH----ELATTFADCSLHFGGPLEASM-FLLKTGQ-S   76 (181)
Q Consensus         3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~----~~~~~~~~~~v~~GGPV~~~~-~~lh~~~-~   76 (181)
                      +|++|+|||||||    +|+++||+|||||||++.++.++.+...    .......+.|||.||||++++ ++||+.. .
T Consensus        17 ~d~~F~~SVIli~----eh~~~Ga~GlIlNkp~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~Lh~~~~~   92 (186)
T d2do8a1          17 DDEYFDRTVIYIC----EHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPRIYTQDQMVLNGGPVNQDRGFIVHSKTDH   92 (186)
T ss_dssp             TTCCSSCCCCEEE----EEETTEEEEECSCCEEEEEHHHHHHHTTCCCCCCGGGCCCCEEEECCSEEEEEEEEEECCCTT
T ss_pred             CCCCcCceEEEEE----EECCCceEEEEecCcccchhHhhhhhhccccccchhcccCccEEeCCCcCCCceeeeccCCCc
Confidence            5899999999999    8999999999999999988776653211    001113478999999999998 7888754 3


Q ss_pred             CCCCceEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChH
Q 047846           77 KLPGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSE  156 (181)
Q Consensus        77 ~~~~~~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~  156 (181)
                      ..+++.+|.+++|++.+.+..+   .+..+ ..|.++|||+|||||+|||||+||++|+|++++++.++||+   ..+ +
T Consensus        93 ~~~~~~~v~~~l~~~~~~~~l~---~~~~~-~~p~~~~~flGysGW~~gQLe~EI~~~~Wlv~~~~~~~iF~---~~~-~  164 (186)
T d2do8a1          93 EFTHSYKVTDDITLTTSGDVLD---SFGTQ-TAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTLFE---TSY-L  164 (186)
T ss_dssp             CCSSEEESSSSCEEECSSHHHH---HTTST-TCCSCEEEEEEEEEECTTHHHHHHHTTSSEEEECCTHHHHT---TTS-S
T ss_pred             cccceEEecCceEEeehHHHHh---hhhhc-cCchhhhhhhcccccCHHHHHHHHhcCCEEEecCCHHHhhC---CCH-H
Confidence            5678999999999987544333   34344 57889999999999999999999999999999999999973   333 8


Q ss_pred             HHHHHHHHHcCCCh
Q 047846          157 SLWEEILQLMGGHY  170 (181)
Q Consensus       157 ~lW~~~l~~~G~~~  170 (181)
                      ++|++++++||+++
T Consensus       165 ~~W~~~l~~lGi~~  178 (186)
T d2do8a1         165 DRWVEANEMLGISG  178 (186)
T ss_dssp             CCSSHHHHTTTSCC
T ss_pred             HHHHHHHHHcCCcc
Confidence            89999999999984