Citrus Sinensis ID: 047873
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | 2.2.26 [Sep-21-2011] | |||||||
| O04491 | 607 | Putative pentatricopeptid | yes | no | 0.982 | 0.751 | 0.575 | 1e-163 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 1.0 | 0.621 | 0.304 | 3e-65 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.922 | 0.577 | 0.297 | 1e-63 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.974 | 0.593 | 0.310 | 1e-62 | |
| Q9T0D6 | 566 | Pentatricopeptide repeat- | no | no | 0.943 | 0.773 | 0.310 | 2e-62 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.971 | 0.618 | 0.276 | 6e-59 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.913 | 0.690 | 0.319 | 2e-56 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.797 | 0.585 | 0.334 | 7e-56 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.849 | 0.516 | 0.315 | 4e-55 | |
| O04504 | 606 | Pentatricopeptide repeat- | no | no | 0.965 | 0.739 | 0.281 | 8e-55 |
| >sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 279/485 (57%), Positives = 346/485 (71%), Gaps = 29/485 (5%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
P FR T+ Y + FL H+M ++A+ L+ L+VS+KG S++S+F S++E R T + G
Sbjct: 112 PGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVTPMCGF 171
Query: 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
++DALMI Y DLGF+ DAIQCFRL RKH F +P RGC L+DRMM+ N GFY+EI
Sbjct: 172 LVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEI 231
Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
LD G+ +VYVFN+LM+K CKEG I DAQ VFDE KR L T VSFNTLING+CK NL
Sbjct: 232 LDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNL 291
Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
DEGFRLK ME S RPDV+TYSALIN LCKEN++D A L EMC+RGL PNDVIFTTL
Sbjct: 292 DEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTL 351
Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
I GH +NG ID+ GD+ AR IVD M GL
Sbjct: 352 IHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGL 411
Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
PDKITYT L+DGFC+ GD+E+AL+IRKEM + GIELD V F+AL+ G C+ G+V++AER
Sbjct: 412 RPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAER 471
Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
LREML+ G+KPDD TYTM++D FCK GD +TGF+LLKEM+SDGH+P+V TYN L+NGLC
Sbjct: 472 ALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLC 531
Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
K GQ+KNA+MLLD ML++GVVPDDITYN LLEGH +H N + E G+V+D A Y
Sbjct: 532 KLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEIGIVADLASYK 591
Query: 452 SLVSK 456
S+V++
Sbjct: 592 SIVNE 596
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/502 (30%), Positives = 253/502 (50%), Gaps = 38/502 (7%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASL-FASILETRGT-HLP 58
PH TL +H L K++ A+ L + +K ASL F S+ ET +
Sbjct: 74 PHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYST 133
Query: 59 GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP-TVTLGFY 117
V D ++ Y L +D A+ L + H F ++D +R+ + +
Sbjct: 134 SSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVF 193
Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
E+L+ SP+V+ +N+L+ C G I A +FD+ +G V++NTLI+G+CK
Sbjct: 194 KEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKL 253
Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
+ +D+GF+L M G+ P++ +Y+ +INGLC+E R+ + +L EM RG + ++V +
Sbjct: 254 RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313
Query: 238 TTLIDGHCKNGRIDM-----------------------------AGDMKEARKIVDEMCT 268
TLI G+CK G AG+M A + +D+M
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328
GL P++ TYT L+DGF ++G + A + +EM G V + ALI+G C GK+ +
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED 433
Query: 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388
A +L +M + GL PD +Y+ V+ FC++ D R+ +EM G P TY++L+
Sbjct: 434 AIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493
Query: 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVS 445
G C+ + K A L + ML +G+ PD+ TY L+ +C G+ E +L + EKG++
Sbjct: 494 GFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLP 553
Query: 446 DYACYTSLV---SKSSKYRQKR 464
D Y+ L+ +K S+ R+ +
Sbjct: 554 DVVTYSVLINGLNKQSRTREAK 575
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 143/481 (29%), Positives = 239/481 (49%), Gaps = 53/481 (11%)
Query: 29 LLHLIVSKKGMGSSASLFASILETRGTHLPG--------------------LVLDALMIV 68
++HL V+ K + + SL +S E ++ V D V
Sbjct: 125 VIHLAVASKDLKVAQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQV 184
Query: 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT-LGFYLEILDYGYSP 127
VD G L +A + F + + + C + R+ + T T + + E + G
Sbjct: 185 LVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCW 244
Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
+V +N+++H +C+ G+IK+A + +G +S++T++NG+C+ LD+ ++L
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304
Query: 188 SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
VM+ G++P+ Y Y ++I LC+ +L +AE EM +G+ P+ V++TTLIDG CK
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 248 GRIDMA-----------------------------GDMKEARKIVDEMCTNGLNPDKITY 278
G I A GDM EA K+ EM GL PD +T+
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424
Query: 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338
T L++G+CK G ++ A + MI+ G + V +T LI G C+ G + A +L EM K
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484
Query: 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKN 398
+GL+P+ TY +++ CK+G+ + +L+ E + G TY LM+ CK G++
Sbjct: 485 IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 544
Query: 399 ANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQS---EKGLVSDYACYTSLVS 455
A +L ML G+ P +T+N+L+ G C HG ED +KL + KG+ + + SLV
Sbjct: 545 AQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVK 604
Query: 456 K 456
+
Sbjct: 605 Q 605
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (614), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 147/474 (31%), Positives = 243/474 (51%), Gaps = 22/474 (4%)
Query: 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL-V 61
F+ ++ +Y + H L +M+ A +L +V K + +F + TR +PG V
Sbjct: 138 FKHSVESYCIVAHILFCARMYYDANSVLKEMVLSK---ADCDVFDVLWSTRNVCVPGFGV 194
Query: 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
DAL V +DLG L++AIQCF +++ R C L+ R + F+ +++
Sbjct: 195 FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254
Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
G P+V+ +N+++ +CKEG ++ A+ +F+E RGL V++N++I+G K LD
Sbjct: 255 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 314
Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
+ M+ PDV TY+ALIN CK +L EM GL PN V ++TL+
Sbjct: 315 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLV 374
Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
D CK G M++A K +M GL P++ TYT L+D CK G+L A + EM
Sbjct: 375 DAFCKEGM------MQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEM 428
Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
++ G+E + V +TALI G C ++ EAE + +M G+ P+ A+Y +I F K +
Sbjct: 429 LQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNM 488
Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
LL E++ G P + Y + GLC +++ A ++++ M + G+ + + Y L
Sbjct: 489 DRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTL 548
Query: 422 LEGHCKHGNP-------EDFDKLQSEKGLVS-----DYACYTSLVSKSSKYRQK 463
++ + K GNP ++ +L E +V+ D C LVSK+ Y +
Sbjct: 549 MDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR 602
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 153/493 (31%), Positives = 258/493 (52%), Gaps = 55/493 (11%)
Query: 8 HAYSTMVHFLVAHKMHSQ---ARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDA 64
HA S ++ +++ K+HSQ + LLH + + + L+ I+ +++ L+
Sbjct: 57 HAQSLLLQ-VISGKIHSQFFTSSSLLHYLTESETSKTKFRLYEVII---NSYVQSQSLN- 111
Query: 65 LMIVY----VDLGFLDDAIQCFR--------------------------LLRKHYFRIPA 94
L I Y VD GF+ + CF +L + F I
Sbjct: 112 LSISYFNEMVDNGFVPGS-NCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILI 170
Query: 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
+GC C + ++ +E+ ++G+SP+V ++ L+ CK+G+I+ A+ +F E
Sbjct: 171 KGC-CEAGEIEKS------FDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFE 223
Query: 155 FGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214
GK GL A ++ LING K +GF + M+ G+ P++YTY+ ++N LCK+ R
Sbjct: 224 MGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGR 283
Query: 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
DA + EM ERG++ N V + TLI G C+ +++ EA K+VD+M ++G+NP+
Sbjct: 284 TKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLN------EANKVVDQMKSDGINPN 337
Query: 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334
ITY L+DGFC G L AL + +++ RG+ V + L+SGFCR G A +M++
Sbjct: 338 LITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVK 397
Query: 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHG 394
EM + G+KP TYT++ID F ++ + + +L M G +P V TY+ L++G C G
Sbjct: 398 EMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKG 457
Query: 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYT 451
Q+ A+ L +M++ P+++ YN ++ G+CK G+ KL EK L + A Y
Sbjct: 458 QMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYR 517
Query: 452 SLVSKSSKYRQKR 464
++ K R+ +
Sbjct: 518 YMIEVLCKERKSK 530
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (582), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 145/524 (27%), Positives = 246/524 (46%), Gaps = 73/524 (13%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG--SSASLFASILETRGTHLP 58
P+F+ T + S M+H LV S A+ L ++ + G+ + S G++
Sbjct: 107 PNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSN-- 164
Query: 59 GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL 118
V D L+ YV L +A + F LLR F + C LI ++R + G Y
Sbjct: 165 DSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQ 224
Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
EI G +VY N++++ LCK+GK++ + ++G++ V++NTLI+ +
Sbjct: 225 EISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKG 284
Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
++E F L + M G G P VYTY+ +INGLCK + + A+ + EM GL+P+ +
Sbjct: 285 LMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYR 344
Query: 239 TLIDGHCKNGRI----DMAGDMKEARKIVDEMCTN------------------------- 269
+L+ CK G + + DM+ + D +C +
Sbjct: 345 SLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA 404
Query: 270 GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329
GL PD + YTIL+ G+C++G + A+++R EM+++G +D V + ++ G C+ + EA
Sbjct: 405 GLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEA 464
Query: 330 ERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS--------------DG 375
+++ EM + L PD T T++ID CK G+ + L ++M+ DG
Sbjct: 465 DKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDG 524
Query: 376 H---------------------LPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414
LP +Y+ L+N LC G L A + D M+ + P
Sbjct: 525 FGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPT 584
Query: 415 DITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLV 454
+ N +++G+C+ GN D +K+ SE G V D Y +L+
Sbjct: 585 VMICNSMIKGYCRSGNASDGESFLEKMISE-GFVPDCISYNTLI 627
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/454 (31%), Positives = 231/454 (50%), Gaps = 30/454 (6%)
Query: 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--TRGTHLPGLVLDA 64
L+ Y+ M++ L S A +L ++ K G G S S+L G + V A
Sbjct: 100 LYTYNIMINCLCRRSQLSFALAILGKMM-KLGYGPSIVTLNSLLNGFCHGNRISEAV--A 156
Query: 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
L+ V++G+ D + L+ + A L++RM+ G
Sbjct: 157 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVK----------------G 200
Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
P + + +++ LCK G+ A + ++ K + A V ++T+I+ CK +++D+
Sbjct: 201 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDAL 260
Query: 185 RLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
L + M+ G+RPDV+TYS+LI+ LC R DA LL +M ER + PN V F +LID
Sbjct: 261 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAF 320
Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
K G+ + EA K+ DEM ++P+ +TY L++GFC L+ A I M+ +
Sbjct: 321 AKEGK------LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK 374
Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTG 364
D V + LI+GFC+ KVV+ + R+M + GL + TYT +I F + D
Sbjct: 375 DCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNA 434
Query: 365 FRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEG 424
+ K+M SDG P + TYN L++GLCK+G+L+ A ++ + + + PD TYNI+ EG
Sbjct: 435 QMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEG 494
Query: 425 HCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
CK G ED L S KG+ D Y +++S
Sbjct: 495 MCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMIS 528
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 207/395 (52%), Gaps = 25/395 (6%)
Query: 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123
AL+ V++G+ D L+ + A L+D+M++
Sbjct: 174 ALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR---------------- 217
Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
G P + + +++ LCK G I A + + K + A V +NT+I+G CK K++D+
Sbjct: 218 GCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDA 277
Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
L + M+ G+RPDV+TYS+LI+ LC R DA LL +M ER + PN V F+ LID
Sbjct: 278 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 337
Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
K G+ + EA K+ DEM ++PD TY+ L++GFC L+ A + + MI
Sbjct: 338 FVKEGK------LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 391
Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
+ + V ++ LI GFC+ +V E + REM + GL + TYT +I F + D
Sbjct: 392 KDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 451
Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
+ K+M S G P + TYN L++GLCK+G+L A ++ + + + PD TYNI++E
Sbjct: 452 AQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIE 511
Query: 424 GHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVS 455
G CK G ED +L S KG+ + Y +++S
Sbjct: 512 GMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMIS 546
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/438 (31%), Positives = 212/438 (48%), Gaps = 44/438 (10%)
Query: 63 DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP------------ 110
+A+M V VD G+ D A + + +R + +T+ P
Sbjct: 115 NAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSS 174
Query: 111 -----------TVTLGFYLE------------ILDYGYSPSVYVFNVLMHKLCKEGKIKD 147
TV GFY E +L G S + FN L+ LCK+G +K+
Sbjct: 175 QGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKE 234
Query: 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207
+ + D+ KRG+ ++N I G C+ LD R+ + G +PDV TY+ LI
Sbjct: 235 CEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIY 294
Query: 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
GLCK ++ +AE+ L +M GL P+ + TLI G+CK G + +A +IV +
Sbjct: 295 GLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLA------ERIVGDAV 348
Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327
NG PD+ TY L+DG C EG+ AL + E + +GI+ + + + LI G G ++
Sbjct: 349 FNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMIL 408
Query: 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387
EA ++ EM + GL P+ T+ ++++ CK G L+K M S G+ P + T+N L+
Sbjct: 409 EAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468
Query: 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF---DKLQSEKGLV 444
+G +++NA +LD MLD GV PD TYN LL G CK ED K EKG
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528
Query: 445 SDYACYTSLVSKSSKYRQ 462
+ + L+ +YR+
Sbjct: 529 PNLFTFNILLESLCRYRK 546
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 130/462 (28%), Positives = 240/462 (51%), Gaps = 14/462 (3%)
Query: 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDA 64
++L ++H L K +S+ R L V S+F +I + ++ D
Sbjct: 99 VSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIADM 158
Query: 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124
L++ Y + + + F+ + +++ A C+ L+ +++ N Y E++
Sbjct: 159 LVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRK 218
Query: 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF 184
P+V+ FNV+++ LCK GK+ A+ V ++ G VS+NTLI+G+CK + +
Sbjct: 219 IQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMY 278
Query: 185 RLKSV---MEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
+ +V M + + P++ T++ LI+G K++ L + + EM ++ + PN + + +LI
Sbjct: 279 KADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLI 338
Query: 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
+G C G+I A M+ D+M + G+ P+ ITY L++GFCK L+ ALD+ +
Sbjct: 339 NGLCNGGKISEAISMR------DKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSV 392
Query: 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361
+G + LI +C+ GK+ + + EM + G+ PD TY +I C+NG+
Sbjct: 393 KGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNI 452
Query: 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNIL 421
+ +L ++ S G LP + T++ LM G C+ G+ + A MLL M +G+ P +TYNI+
Sbjct: 453 EAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIV 511
Query: 422 LEGHCKHGNPEDF----DKLQSEKGLVSDYACYTSLVSKSSK 459
++G+CK GN + +++ E+ L + A Y L+ S+
Sbjct: 512 MKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQ 553
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| 224069254 | 599 | predicted protein [Populus trichocarpa] | 1.0 | 0.774 | 0.629 | 0.0 | |
| 225451367 | 592 | PREDICTED: putative pentatricopeptide re | 0.997 | 0.782 | 0.634 | 1e-180 | |
| 449446121 | 590 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.786 | 0.582 | 1e-165 | |
| 449522636 | 590 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.786 | 0.578 | 1e-163 | |
| 147861320 | 559 | hypothetical protein VITISV_031191 [Viti | 0.909 | 0.754 | 0.625 | 1e-162 | |
| 356499079 | 615 | PREDICTED: putative pentatricopeptide re | 0.989 | 0.746 | 0.577 | 1e-162 | |
| 15218241 | 607 | pentatricopeptide repeat-containing prot | 0.982 | 0.751 | 0.575 | 1e-161 | |
| 297849270 | 607 | pentatricopeptide repeat-containing prot | 0.982 | 0.751 | 0.577 | 1e-161 | |
| 357491947 | 811 | Pentatricopeptide repeat-containing prot | 0.989 | 0.565 | 0.569 | 1e-154 | |
| 356552005 | 509 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.801 | 0.730 | 0.580 | 1e-132 |
| >gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa] gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/496 (62%), Positives = 376/496 (75%), Gaps = 32/496 (6%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
P F T+ +Y +MVHFL+AH+M+ QA LLH +VS+KG GS++S+FASILET+GT
Sbjct: 104 PTFSHTVQSYCSMVHFLIAHRMNQQAESLLHFVVSRKGKGSASSVFASILETKGTLSSSF 163
Query: 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
V DALM VY + G++ DAIQCFRL +KH +IP GC+CL++RM++ + P V L FYLEI
Sbjct: 164 VFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEI 223
Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
LD GY P+VY FNVLM++LCKEGK+KDAQ++FDE K GL TAVSFNTLING+CK+ NL
Sbjct: 224 LDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNL 283
Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
+EGFRLK VME + PDV+TYSALI+GLCKE +L+DA L EMC+RGL PNDV FTTL
Sbjct: 284 EEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTL 343
Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
I+G CKNGR+D+A G +EARK V EM GL
Sbjct: 344 INGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGL 403
Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
PDK TYT LLDG CKEGDLE AL++RKEM+K GI+LDNVAFTA+ISG CR GK+V+AER
Sbjct: 404 IPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAER 463
Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
LREML+ GLKPDD TYTMV+D FCK GD K GF+LLKEM+SDGH+P V TYN LMNGLC
Sbjct: 464 TLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLC 523
Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
K GQ+KNA+MLL+ ML+LGVVPDDITYNILL+GHCKHG DF +++E GLVSDYA Y
Sbjct: 524 KQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEMGLVSDYASYR 583
Query: 452 SL---VSKSSKYRQKR 464
SL +SK+SK RQKR
Sbjct: 584 SLLHELSKASKDRQKR 599
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Vitis vinifera] gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/495 (63%), Positives = 365/495 (73%), Gaps = 32/495 (6%)
Query: 2 HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV 61
HFRL++H+Y TM HFL HKM S+A+ LL +VS+KG S++S+F S+LE RGTH LV
Sbjct: 98 HFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNLV 157
Query: 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
LM Y D G+ DAIQCFRL+RKH +IP C L DR+M+ NL + FY EIL
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217
Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
D GY P V FNVLMH+LCKE KI +AQ++F E GKRGL T VSFNTLING+CK+ NLD
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277
Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
+GFRLK M + + PDV+TYS LINGLCKE +LDDA L EMC+RGL PNDV FTTLI
Sbjct: 278 QGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLI 337
Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
+GHC GR D+ GD++EA+K+V EM GL
Sbjct: 338 NGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK 397
Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
PDK TYT+L+DG CKEGDLESAL+IRKEM+K GIELDNVAFTALISGFCR G+V+EAER
Sbjct: 398 PDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457
Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
LREML+ G+KPDDATYTMVI FCK GD KTGF+LLKEM+ DGH+P V TYN L+NGLCK
Sbjct: 458 LREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCK 517
Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTS 452
GQ+KNANMLLD ML+LGVVPDDITYNILLEGHCKHGN EDFDKLQSEKGLV DY YTS
Sbjct: 518 QGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNREDFDKLQSEKGLVQDYGSYTS 577
Query: 453 LVS---KSSKYRQKR 464
L+ K+ K RQKR
Sbjct: 578 LIGDLRKTCKERQKR 592
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 289/496 (58%), Positives = 357/496 (71%), Gaps = 32/496 (6%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
P FR T +Y M +FL AH+M + + ++ +VS+KG S+AS+FA+IL+T GT
Sbjct: 95 PTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNF 154
Query: 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
V DALMI Y D GF+ DAIQCFRL+R F+IP GC L+D+M+ +N P FY EI
Sbjct: 155 VFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEI 214
Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
L+YG+ P V +N+L++K CKEG I+DA+++F+E KRGL T VSFNTLING CK++NL
Sbjct: 215 LEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNL 274
Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
DEGFRLK ME + + PDV+TYS LI+GLCKE RLD AE L EM +RGL PN + FT L
Sbjct: 275 DEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTAL 334
Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
IDG C++ RID A GD+ +ARK+VDEM G+
Sbjct: 335 IDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGM 394
Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
PDKITYT L+DG+CKEGDLESA++IRK M + G+ LDNVAFTALISGFCR G+V +AER
Sbjct: 395 KPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAER 454
Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
LREM++ G+KPDDATYTMVID +CK G+ K GF+LLKEM+ +GH P V TYN LMNGLC
Sbjct: 455 TLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLC 514
Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
K GQ+KNANMLL+ ML+LGV PDDITYNILLEGHCK+G ED KL++EKGL+ DYA YT
Sbjct: 515 KQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKLRNEKGLIVDYAYYT 574
Query: 452 SLVS---KSSKYRQKR 464
SLVS KS K RQKR
Sbjct: 575 SLVSEYNKSLKDRQKR 590
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 287/496 (57%), Positives = 356/496 (71%), Gaps = 32/496 (6%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
P FR T +Y M +FL AH+M + + ++ +VS+KG S+AS+FA+IL+T GT
Sbjct: 95 PTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNF 154
Query: 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
V DALMI Y D GF+ DAIQCFRL+R F+IP GC L+D+M+ +N P FY EI
Sbjct: 155 VFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEI 214
Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
L+YG+ P V +N+L++K CKEG I+DA+++F+E KRGL T VSFNTLING CK++NL
Sbjct: 215 LEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNL 274
Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
DEGFRLK ME + + PDV+TYS LI+GLCKE RLD AE L EM +RGL PN + FT L
Sbjct: 275 DEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTAL 334
Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
IDG ++ R+D A GD+ +ARK+VDEM G+
Sbjct: 335 IDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGM 394
Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
PDKITYT L+DG+CKEGDLESA++IRK M + G+ LDNVAFTALISGFCR G+V +AER
Sbjct: 395 KPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAER 454
Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
LREM++ G+KPDDATYTMVID +CK G+ K GF+LLKEM+ +GH P V TYN LMNGLC
Sbjct: 455 TLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLC 514
Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
K GQ+KNANMLL+ ML+LGV PDDITYNILLEGHCK+G ED KL++EKGL+ DYA YT
Sbjct: 515 KQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKLRNEKGLIVDYAYYT 574
Query: 452 SLVS---KSSKYRQKR 464
SLVS KS K RQKR
Sbjct: 575 SLVSEYNKSLKDRQKR 590
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/451 (62%), Positives = 331/451 (73%), Gaps = 29/451 (6%)
Query: 2 HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLV 61
HFRL++H+Y TM HFL HKM S+A+ LL +VS+KG S++S+F S+LE RGTH LV
Sbjct: 98 HFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNLV 157
Query: 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL 121
LM Y D G+ DAIQCFRL+RKH +IP C L DR+M+ NL + FY EIL
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217
Query: 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181
D GY P V FNVLMH+LCKE KI +AQ++F E GKRGL T VSFNTLING+CK+ NLD
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277
Query: 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241
+GFRLK M + + PDV+TYS LINGLCKE +LDDA L EMC+RGL PNDV FTTLI
Sbjct: 278 QGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLI 337
Query: 242 DGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGLN 272
+GHC GR D+ GD++EA+K+V EM GL
Sbjct: 338 NGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK 397
Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332
PDK TYT+L+DG CKEGDLESAL+IRKEM+K GIELDNVAFTALISGFCR G+V+EAER
Sbjct: 398 PDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457
Query: 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
LREML+ G+KPDDATYTMVI FCK GD KTGF+LLKEM+ DGH+P V TYN L+NGLCK
Sbjct: 458 LREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCK 517
Query: 393 HGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
GQ+KNANMLLD ML+LGVVPDDITYNILLE
Sbjct: 518 QGQMKNANMLLDAMLNLGVVPDDITYNILLE 548
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/495 (57%), Positives = 355/495 (71%), Gaps = 36/495 (7%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-- 58
P FR TLH+Y TM+HFL H+M QA L+ +VS+KG S+++LF+SIL T H
Sbjct: 113 PPFRHTLHSYCTMLHFLCLHRMLPQAHSLVSFLVSRKGTNSASTLFSSILRTMPRHHHHH 172
Query: 59 ---GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV--T 113
GLV DAL+ YVD GF DA+QCFRL+ K+ F +P RGC L+ R++R + +
Sbjct: 173 HSVGLVFDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERS 232
Query: 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173
YLE+LD GY P +Y FNVLMH CK G + +A++VFDE KRGL T VSFNTLI+G
Sbjct: 233 WALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISG 292
Query: 174 HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233
CK+ +++EGFRLK VME G+ PDV+T+SALINGLCKE RLD+ LL EMC RGL PN
Sbjct: 293 CCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPN 352
Query: 234 DVIFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVD 264
V FTTLIDG CK G++D+A GD+KEAR++V+
Sbjct: 353 GVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVN 412
Query: 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324
EM +GL PDKIT+T L+DG CK+GD+ESAL+I++ M++ GIELD+VAFTALISG CR G
Sbjct: 413 EMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREG 472
Query: 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384
+V +A RML +ML G KPDD TYTMVIDCFCK GD K GF+LLKEM+SDGH+P V TYN
Sbjct: 473 RVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYN 532
Query: 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLV 444
ALMNGLCK GQ+KNA MLLD ML++GV P+DITYNILL+GH KHG+ D D SEKGLV
Sbjct: 533 ALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVDVDIFNSEKGLV 592
Query: 445 SDYACYTSLVSKSSK 459
+DYA YT+LV++SSK
Sbjct: 593 TDYASYTALVNESSK 607
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g09680 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana] gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 279/485 (57%), Positives = 346/485 (71%), Gaps = 29/485 (5%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
P FR T+ Y + FL H+M ++A+ L+ L+VS+KG S++S+F S++E R T + G
Sbjct: 112 PGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVTPMCGF 171
Query: 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
++DALMI Y DLGF+ DAIQCFRL RKH F +P RGC L+DRMM+ N GFY+EI
Sbjct: 172 LVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEI 231
Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
LD G+ +VYVFN+LM+K CKEG I DAQ VFDE KR L T VSFNTLING+CK NL
Sbjct: 232 LDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNL 291
Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
DEGFRLK ME S RPDV+TYSALIN LCKEN++D A L EMC+RGL PNDVIFTTL
Sbjct: 292 DEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTL 351
Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
I GH +NG ID+ GD+ AR IVD M GL
Sbjct: 352 IHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGL 411
Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
PDKITYT L+DGFC+ GD+E+AL+IRKEM + GIELD V F+AL+ G C+ G+V++AER
Sbjct: 412 RPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAER 471
Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
LREML+ G+KPDD TYTM++D FCK GD +TGF+LLKEM+SDGH+P+V TYN L+NGLC
Sbjct: 472 ALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLC 531
Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
K GQ+KNA+MLLD ML++GVVPDDITYN LLEGH +H N + E G+V+D A Y
Sbjct: 532 KLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEIGIVADLASYK 591
Query: 452 SLVSK 456
S+V++
Sbjct: 592 SIVNE 596
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/485 (57%), Positives = 346/485 (71%), Gaps = 29/485 (5%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
P FR T+ Y M FL H+M +A+ L+ L+VS+KG S++S+F S++E RGT +
Sbjct: 112 PEFRFTVETYFVMARFLAIHEMFVEAQSLIELVVSRKGKNSASSVFISLVEMRGTPMCDF 171
Query: 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEI 120
++DALMI Y+DLGF+ D IQCFRL RKH F +P RGC L+DRMM+ N GFY+EI
Sbjct: 172 LVDALMITYMDLGFIPDVIQCFRLSRKHNFVVPIRGCGNLLDRMMKLNPTGTVWGFYMEI 231
Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
LD G+ +VYVFN+LM+K CKEG I DAQ VFDE KR L T VSFNTLING+CK NL
Sbjct: 232 LDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNL 291
Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240
D GFRLK ME S RPDV+TYSALIN LCKEN++D A L +EMCERGL PNDVIFTTL
Sbjct: 292 DVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTL 351
Query: 241 IDGHCKNGRIDMA-----------------------------GDMKEARKIVDEMCTNGL 271
I GH +NG+ID+ GD+ AR IVD M GL
Sbjct: 352 IHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGL 411
Query: 272 NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331
PDK+TYT L+DGFC+ GD+++AL+IRKEM + GIELD V F+ALI G C+ G+V++AER
Sbjct: 412 RPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAER 471
Query: 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391
LREML+ G+KPDD TYTM++D FCK GD +TGF+LLKEM+SDGH+P V TYN L+NGLC
Sbjct: 472 ALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLC 531
Query: 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYT 451
K GQ+KNA+MLLD ML++GVVPDDITYN LLEGH +H N K + E G+V+D A Y
Sbjct: 532 KLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHANASKHYKQKPEIGIVADLASYK 591
Query: 452 SLVSK 456
SLV++
Sbjct: 592 SLVNE 596
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 281/493 (56%), Positives = 352/493 (71%), Gaps = 34/493 (6%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL--- 57
P FR TLH YSTM HFL +H + SQ L I+SK G SS SL +S+++T TH
Sbjct: 93 PPFRHTLHNYSTMAHFLSSHNLLSQTHSLFLFIISKMGHHSSTSLISSLIQTVPTHHRHN 152
Query: 58 -PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL-PTVTLG 115
LV DAL+I Y D F++DAIQC RL++K+ F IP GC L+ R+M+ N P
Sbjct: 153 HSVLVFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLNQQPGHCWE 212
Query: 116 FYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
FYLE+LDYGY P+VY+FN+LMH CK G + +A+MVFDE +RGL + VSFNTLI+G+C
Sbjct: 213 FYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYC 272
Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
++KN++EGF LKSVME + PDV+TYSALINGLCKE+R+++A L EMCE GL PN V
Sbjct: 273 RSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGV 332
Query: 236 IFTTLIDGHCKNGRIDMA-----------------------------GDMKEARKIVDEM 266
FTTLIDG CK+G+ID+A GD+KEARK+++EM
Sbjct: 333 TFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEM 392
Query: 267 CTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326
NG PDKIT+T L+DG CK+GD++SAL+I+ M++ GIELD+VAFTALISG CR G+V
Sbjct: 393 IGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRV 452
Query: 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386
+AERML++ML G KPDD TYTMVIDCFCK GD K G +LLKEM+ DG +P V TYNAL
Sbjct: 453 RDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNAL 512
Query: 387 MNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSD 446
MNG CK GQ+KNA MLL ML++ VVP+DIT+NILL+GHCKHG+ DF EKGLVSD
Sbjct: 513 MNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGSSVDFKIFNGEKGLVSD 572
Query: 447 YACYTSLVSKSSK 459
YA YT+LV++S K
Sbjct: 573 YASYTALVNESIK 585
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g09680-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/403 (58%), Positives = 289/403 (71%), Gaps = 31/403 (7%)
Query: 88 HYFRIPARGCRCLIDRMMRTNLPTV--TLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145
H F +P +GC L+ R++R + + FYLE+LD GY P+ + FNVLMH CK G +
Sbjct: 99 HLFPVPVQGCENLLRRVVRLRPVELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGV 158
Query: 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205
A++VFDE KRGL T VSFNTLI+G CKA ++EGFRLK VME + PDV+T+SAL
Sbjct: 159 GSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSAL 218
Query: 206 INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA------------ 253
INGLCKE RLD+ LL EMC +GL PN V FT LIDG CK G++D+A
Sbjct: 219 INGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGV 278
Query: 254 -----------------GDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
GD+KEAR++V+EM +GL PD+IT+T L+DG CK GD+ESAL+
Sbjct: 279 RPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALE 338
Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
I++ M++ GIELD+VAFT LISG CR G+V +AERMLR+ML G KPDD TYTMV+DCFC
Sbjct: 339 IKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFC 398
Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
K G+ GF+LLKEM+SDGH+P V TYNALMNGLCK GQ+KNA MLLD ML++GV P+DI
Sbjct: 399 KKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDI 458
Query: 417 TYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSK 459
TYNILLEGH KHG+ D D SEKGLV DYA YT+LV++SSK
Sbjct: 459 TYNILLEGHSKHGSSVDVDIFNSEKGLVKDYASYTALVNESSK 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| TAIR|locus:2024367 | 607 | AT1G09680 "AT1G09680" [Arabido | 0.963 | 0.736 | 0.504 | 1.9e-113 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.965 | 0.599 | 0.311 | 1.3e-59 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.734 | 0.602 | 0.357 | 2.7e-59 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.911 | 0.580 | 0.308 | 8.9e-54 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.702 | 0.518 | 0.349 | 9.9e-54 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.728 | 0.442 | 0.348 | 3.8e-53 | |
| TAIR|locus:2024301 | 606 | AT1G09820 "AT1G09820" [Arabido | 0.946 | 0.724 | 0.285 | 3.8e-53 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.754 | 0.570 | 0.339 | 4.9e-53 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.853 | 0.631 | 0.326 | 4.9e-53 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.765 | 0.486 | 0.331 | 5.4e-53 |
| TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
Identities = 231/458 (50%), Positives = 298/458 (65%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGL 60
P FR T+ Y + FL H+M ++A+ L+ L+VS+KG S++S+F S++E R T + G
Sbjct: 112 PGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVTPMCGF 171
Query: 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTL-GFYLE 119
++DALMI Y DLGF+ DAIQCFRL RKH F +P RGC L+DRMM+ N PT T+ GFY+E
Sbjct: 172 LVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLN-PTGTIWGFYME 230
Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
ILD G+ +VYVFN+LM+K CKEG I DAQ VFDE KR L T VSFNTLING+CK N
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGN 290
Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
LDEGFRLK ME S RPDV+TYSALIN LCKEN++D A L EMC+RGL PNDVIFTT
Sbjct: 291 LDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTT 350
Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
LI GH +NG ID+ MKE+ + +M + GL PD + Y L++GFCK GDL +A +I
Sbjct: 351 LIHGHSRNGEIDL---MKESYQ---KMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVD 404
Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
MI+RG+ D + +T LI GFCRGG V A + +EM + G++ D ++ ++ CK G
Sbjct: 405 GMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEG 464
Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
R L+EM G P TY +M+ CK G + LL M G VP +TYN
Sbjct: 465 RVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYN 524
Query: 420 ILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLV 454
+LL G CK G ++ D L G+V D Y +L+
Sbjct: 525 VLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLL 562
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 144/462 (31%), Positives = 238/462 (51%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASL-FASILETRGT-HLP 58
PH TL +H L K++ A+ L + +K ASL F S+ ET +
Sbjct: 74 PHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYST 133
Query: 59 GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT--NLPTVTLGF 116
V D ++ Y L +D A+ L + H F ++D +R+ N+ +
Sbjct: 134 SSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNI-SFAENV 192
Query: 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
+ E+L+ SP+V+ +N+L+ C G I A +FD+ +G V++NTLI+G+CK
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252
Query: 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVI 236
+ +D+GF+L M G+ P++ +Y+ +INGLC+E R+ + +L EM RG + ++V
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVT 312
Query: 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALD 296
+ TLI G+CK G A M EM +GL P ITYT L+ CK G++ A++
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHA------EMLRHGLTPSVITYTSLIHSMCKAGNMNRAME 366
Query: 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356
+M RG+ + +T L+ GF + G + EA R+LREM G P TY +I+ C
Sbjct: 367 FLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHC 426
Query: 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416
G + +L++M+ G P V +Y+ +++G C+ + A + M++ G+ PD I
Sbjct: 427 VTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTI 486
Query: 417 TYNILLEGHCKHGNPEDFDKLQSEK---GLVSDYACYTSLVS 455
TY+ L++G C+ ++ L E GL D YT+L++
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALIN 528
|
|
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 125/350 (35%), Positives = 206/350 (58%)
Query: 118 LEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
+E+ ++G+SP+V ++ L+ CK+G+I+ A+ +F E GK GL A ++ LING K
Sbjct: 187 IELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKN 246
Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237
+GF + M+ G+ P++YTY+ ++N LCK+ R DA + EM ERG++ N V +
Sbjct: 247 GVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTY 306
Query: 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297
TLI G C+ +++ EA K+VD+M ++G+NP+ ITY L+DGFC G L AL +
Sbjct: 307 NTLIGGLCREMKLN------EANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSL 360
Query: 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
+++ RG+ V + L+SGFCR G A +M++EM + G+KP TYT++ID F +
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFAR 420
Query: 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
+ + + +L M G +P V TY+ L++G C GQ+ A+ L +M++ P+++
Sbjct: 421 SDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVI 480
Query: 418 YNILLEGHCKHGNPEDFDKL---QSEKGLVSDYACYTSLVSKSSKYRQKR 464
YN ++ G+CK G+ KL EK L + A Y ++ K R+ +
Sbjct: 481 YNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSK 530
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 133/431 (30%), Positives = 214/431 (49%)
Query: 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-RGTHLPG 59
P+F+ T + S M+H LV S A+ L ++ + G+ S + S+ T
Sbjct: 107 PNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGV-SRLEIVNSLDSTFSNCGSND 165
Query: 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
V D L+ YV L +A + F LLR F + C LI ++R + G Y E
Sbjct: 166 SVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQE 225
Query: 120 ILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179
I G +VY N++++ LCK+GK++ + ++G++ V++NTLI+ +
Sbjct: 226 ISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGL 285
Query: 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239
++E F L + M G G P VYTY+ +INGLCK + + A+ + EM GL+P+ + +
Sbjct: 286 MEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS 345
Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299
L+ CK G D+ E K+ +M + + PD + ++ ++ F + G+L+ AL
Sbjct: 346 LLMEACKKG------DVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFN 399
Query: 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359
+ + G+ DNV +T LI G+CR G + A + EML+ G D TY ++ CK
Sbjct: 400 SVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRK 459
Query: 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419
+L EM P T L++G CK G L+NA L M + + D +TYN
Sbjct: 460 MLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYN 519
Query: 420 ILLEGHCKHGN 430
LL+G K G+
Sbjct: 520 TLLDGFGKVGD 530
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
Identities = 117/335 (34%), Positives = 185/335 (55%)
Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEG 183
G P ++ + +++ LCK G I A + + K + A V + T+I+ C KN+++
Sbjct: 215 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDA 274
Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
L + M+ G+RP+V TY++LI LC R DA LL +M ER + PN V F+ LID
Sbjct: 275 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 334
Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
K G++ EA K+ DEM ++PD TY+ L++GFC L+ A + + MI
Sbjct: 335 FVKEGKL------VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 388
Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363
+ + V + LI GFC+ +V E + REM + GL + TY +I + GD
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 448
Query: 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423
++ K+M SDG P + TY+ L++GLCK+G+L+ A ++ + + + PD TYNI++E
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 508
Query: 424 GHCKHGNPED-FDKL--QSEKGLVSDYACYTSLVS 455
G CK G ED +D S KG+ + YT+++S
Sbjct: 509 GMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 543
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 121/347 (34%), Positives = 187/347 (53%)
Query: 119 EILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178
++L G S + FN L+ LCK+G +K+ + + D+ KRG+ ++N I G C+
Sbjct: 206 KMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRG 265
Query: 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
LD R+ + G +PDV TY+ LI GLCK ++ +AE+ L +M GL P+ +
Sbjct: 266 ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYN 325
Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
TLI G+CK G + +A +IV + NG PD+ TY L+DG C EG+ AL +
Sbjct: 326 TLIAGYCKGGMVQLA------ERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALF 379
Query: 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358
E + +GI+ + + + LI G G ++EA ++ EM + GL P+ T+ ++++ CK
Sbjct: 380 NEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKM 439
Query: 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
G L+K M S G+ P + T+N L++G +++NA +LD MLD GV PD TY
Sbjct: 440 GCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTY 499
Query: 419 NILLEGHCKHGNPEDFD---KLQSEKGLVSDYACYTSLVSKSSKYRQ 462
N LL G CK ED K EKG + + L+ +YR+
Sbjct: 500 NSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRK 546
|
|
| TAIR|locus:2024301 AT1G09820 "AT1G09820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 130/455 (28%), Positives = 238/455 (52%)
Query: 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDL 72
++H L K +S+ R L V S+F +I + ++ D L++ Y +
Sbjct: 107 LLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIADMLVLAYANN 166
Query: 73 GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132
+ + F+ + +++ A C+ L+ +++ N Y E++ P+V+ F
Sbjct: 167 SRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTF 226
Query: 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFR----LKS 188
NV+++ LCK GK+ A+ V ++ G VS+NTLI+G+CK + ++ LK
Sbjct: 227 NVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKE 286
Query: 189 VMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248
++E + P++ T++ LI+G K++ L + + EM ++ + PN + + +LI+G C G
Sbjct: 287 MVEND-VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGG 345
Query: 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308
+I A M+ D+M + G+ P+ ITY L++GFCK L+ ALD+ + +G
Sbjct: 346 KISEAISMR------DKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVP 399
Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLL 368
+ LI +C+ GK+ + + EM + G+ PD TY +I C+NG+ + +L
Sbjct: 400 TTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLF 459
Query: 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428
++ S G LP + T++ LM G C+ G+ + A MLL M +G+ P +TYNI+++G+CK
Sbjct: 460 DQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKE 518
Query: 429 GNPEDFD----KLQSEKGLVSDYACYTSLVSKSSK 459
GN + +++ E+ L + A Y L+ S+
Sbjct: 519 GNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQ 553
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 122/359 (33%), Positives = 197/359 (54%)
Query: 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159
L+ + + N + + ++ G P + + +++ LCK G+ A + ++ K
Sbjct: 176 LVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGK 235
Query: 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219
+ A V ++T+I+ CK +++D+ L + M+ G+RPDV+TYS+LI+ LC R DA
Sbjct: 236 IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDAS 295
Query: 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYT 279
LL +M ER + PN V F +LID K G++ EA K+ DEM ++P+ +TY
Sbjct: 296 RLLSDMLERKINPNVVTFNSLIDAFAKEGKLI------EAEKLFDEMIQRSIDPNIVTYN 349
Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339
L++GFC L+ A I M+ + D V + LI+GFC+ KVV+ + R+M +
Sbjct: 350 SLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRR 409
Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
GL + TYT +I F + D + K+M SDG P + TYN L++GLCK+G+L+ A
Sbjct: 410 GLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA 469
Query: 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED-FDKL--QSEKGLVSDYACYTSLVS 455
++ + + + PD TYNI+ EG CK G ED +D S KG+ D Y +++S
Sbjct: 470 MVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMIS 528
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 135/414 (32%), Positives = 215/414 (51%)
Query: 50 LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL 109
LET+ T ++ D L+ L +D+AI+CF L+++ F C ++ + R N
Sbjct: 150 LETKST----ILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNR 205
Query: 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169
FY ++ +VY FN++++ LCKEGK+K A+ G+ T V++NT
Sbjct: 206 IENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNT 265
Query: 170 LINGHCKAKNLDEGFRLK-SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228
L+ G + EG RL S M+ G +PD+ TY+ +++ +C E R + +L EM E
Sbjct: 266 LVQGFSLRGRI-EGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASE---VLREMKEI 321
Query: 229 GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
GL P+ V + LI G C N GD++ A DEM G+ P TY L+ G E
Sbjct: 322 GLVPDSVSYNILIRG-CSNN-----GDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFME 375
Query: 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348
+E+A + +E+ ++GI LD+V + LI+G+C+ G +A + EM+ G++P TY
Sbjct: 376 NKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTY 435
Query: 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408
T +I C+ T+ L +++ G P + N LM+G C G + A LL M
Sbjct: 436 TSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDM 495
Query: 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE---KGLVSDYACYTSLVSKSSK 459
+ + PDD+TYN L+ G C G E+ +L E +G+ D+ Y +L+S SK
Sbjct: 496 MSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSK 549
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 122/368 (33%), Positives = 198/368 (53%)
Query: 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119
++ + L+ +V G LDDA + Y +P C + ++ +G LE
Sbjct: 354 VIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDV---CTYNSLIYGYWKEGLVGLALE 410
Query: 120 IL----DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175
+L + G P+VY + +L+ CK GKI +A V +E GL V FN LI+ C
Sbjct: 411 VLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC 470
Query: 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235
K + E + M G +PDVYT+++LI+GLC+ + + A LL +M G+ N V
Sbjct: 471 KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTV 530
Query: 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295
+ TLI+ + G I KEARK+V+EM G D+ITY L+ G C+ G+++ A
Sbjct: 531 TYNTLINAFLRRGEI------KEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKAR 584
Query: 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
+ ++M++ G N++ LI+G CR G V EA +EM+ G PD T+ +I+
Sbjct: 585 SLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGL 644
Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
C+ G + G + ++++++G P T+N LM+ LCK G + +A +LLD ++ G VP+
Sbjct: 645 CRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNH 704
Query: 416 ITYNILLE 423
T++ILL+
Sbjct: 705 RTWSILLQ 712
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O04491 | PPR26_ARATH | No assigned EC number | 0.5752 | 0.9827 | 0.7512 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 464 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-35 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 9e-35
Identities = 89/327 (27%), Positives = 150/327 (45%), Gaps = 31/327 (9%)
Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186
P++ FN+LM I A V + GL A + TLI+ K+ +D F +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
M +G+ +V+T+ ALI+G + ++ A M + + P+ V+F LI +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 247 NGRIDMA----GDMKEARKIVD----------EMCTNGLNPDKI---------------- 276
+G +D A +MK +D + C N D+
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 277 -TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335
YTI ++ ++GD + AL I +M K+G++ D V F+AL+ G + +A +L++
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395
K G+K +Y+ ++ + K L ++++S P V T NAL+ LC+ Q
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 396 LKNANMLLDTMLDLGVVPDDITYNILL 422
L A +L M LG+ P+ ITY+ILL
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 2e-21
Identities = 85/348 (24%), Positives = 148/348 (42%), Gaps = 27/348 (7%)
Query: 76 DDAIQCFRLLRKHY-FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN- 133
+A++ F +L F +PA L++ + Y + G+ P Y+ N
Sbjct: 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163
Query: 134 -VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192
+LMH C G + DA+ +FDE +R L S+ T+I G A N E F L M
Sbjct: 164 VLLMHVKC--GMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFREMWE 217
Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252
G + T+ ++ + L + + G+ + + LID + K G I+
Sbjct: 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE- 276
Query: 253 AGDMKEARKIVDEMCTNGLNPDKIT--YTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310
+AR + D M P+K T + +L G+ G E AL + EM G+ +D
Sbjct: 277 -----DARCVFDGM------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370
F+ +I F R + A++ +++ G D T ++D + K G + +
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY 418
M + ++NAL+ G HG+ A + + M+ GV P+ +T+
Sbjct: 386 MPRKN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 9e-17
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246
PDV TY+ LI+G CK+ ++++A L +EM +RG+ PN ++ LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 5e-16
Identities = 24/47 (51%), Positives = 37/47 (78%)
Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211
V++NTLI+G+CK ++E +L + M+ G++P+VYTYS LI+GLCK
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 6e-16
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 6/56 (10%)
Query: 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287
P+ V + TLIDG+CK G+++ EA K+ +EM G+ P+ TY+IL+DG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVE------EALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 1e-15
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427
P V TYN L++G CK G+++ A L + M G+ P+ TY+IL++G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 5e-15
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
PD +TY L+DG+CK+G +E AL + EM KRGI+ + ++ LI G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 2e-14
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357
D V + LI G+C+ GKV EA ++ EM K G+KP+ TY+++ID CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 2e-14
Identities = 72/330 (21%), Positives = 124/330 (37%), Gaps = 55/330 (16%)
Query: 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216
++GL + V N LI + K K +D+ + + DV +++++I GL NR
Sbjct: 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCF 472
Query: 217 DAELLLHEMCERGLTPNDVIFTTLI--------------------------DGHCKNGRI 250
+A + +M L PN V + DG N +
Sbjct: 473 EALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531
Query: 251 DM---AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
D+ G M A ++ ++ D +++ ILL G+ G A+++ M++ G+
Sbjct: 532 DLYVRCGRMNYA---WNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586
Query: 308 LDNVAFTALISGFCRGGKVVEAERMLREM-LKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366
D V F +L+ R G V + M K + P+ Y V+D + G +
Sbjct: 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646
Query: 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426
+ +M P + AL+N H ++ + + +L P+ + Y ILL C
Sbjct: 647 FINKMPIT---PDPAVWGALLNACRIHRHVELGELAAQHIFELD--PNSVGYYILL---C 698
Query: 427 -------KHGNPEDFDKLQSEKGLVSDYAC 449
K K E GL D C
Sbjct: 699 NLYADAGKWDEVARVRKTMRENGLTVDPGC 728
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 3e-13
Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 39/314 (12%)
Query: 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN--GHCKAKNLDEG 183
+P VY V + ++G A ++D+ K+G+ V F+ L++ GH A +LD+
Sbjct: 613 TPEVYTIAV--NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH--AGDLDKA 668
Query: 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243
F + G++ +YS+L+ A L ++ L P LI
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303
C+ ++ +A +++ EM GL P+ ITY+ILL ++ D + LD+ + +
Sbjct: 729 LCEGNQLP------KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 304 RGIELDNVAFTALISGFCR--------GGKVV----------------EAERMLREMLKV 339
GI+ N+ I+G C G+ V A + RE +
Sbjct: 783 DGIKP-NLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841
Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399
G P + V+ C D RL++ + + L++G ++ A
Sbjct: 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYD--PRA 899
Query: 400 NMLLDTMLDLGVVP 413
LL+ LGVVP
Sbjct: 900 FSLLEEAASLGVVP 913
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 5e-13
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392
PD TY +ID +CK G + +L EM+ G P V TY+ L++GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 4e-12
Identities = 75/340 (22%), Positives = 127/340 (37%), Gaps = 77/340 (22%)
Query: 69 YVDLGFLDDAIQCF-RLL----RKHYFRIPA--RGCRCLID-RMMRTNLPTVTLGFYLEI 120
Y G+ D+A+ + R+L R + P R C + D R + +
Sbjct: 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE--------VHAHV 213
Query: 121 LDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180
+ +G+ V V N L+ K G + A++VFD +R +S+N +I+G+ +
Sbjct: 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGEC 269
Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALIN--GLCKENRLDDAELLLHEMCERGLTPNDVIFT 238
EG L M + PD+ T +++I+ L + RL + + + G + +
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERL--GREMHGYVVKTGFAVDVSVCN 327
Query: 239 TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298
+LI + G EA K+ M T
Sbjct: 328 SLIQMYLS------LGSWGEAEKVFSRMETK----------------------------- 352
Query: 299 KEMIKRGIELDNVAFTALISGFCRGG---KVVEAERMLREMLKVGLKPDDATYTMVIDCF 355
D V++TA+ISG+ + G K +E + M + + PD+ T V+
Sbjct: 353 ----------DAVSWTAMISGYEKNGLPDKALETYAL---MEQDNVSPDEITIASVLSAC 399
Query: 356 CKNGDTKTGFRLLKEMRSDGHLPAVETYNAL--MNGLCKH 393
GD G +L + G + V NAL M CK
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 5e-12
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176
P V +N L+ CK+GK+++A +F+E KRG+ +++ LI+G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 6e-11
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 193 SGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225
G++PDV TY+ LI+GLC+ R+D+A LL EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 71/297 (23%), Positives = 128/297 (43%), Gaps = 32/297 (10%)
Query: 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187
V + N ++ + G++ A VF + +R L S+N L+ G+ KA DE L
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAKAGYFDEALCLY 175
Query: 188 SVMEGSGMRPDVYTYSALIN---GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH 244
M +G+RPDVYT+ ++ G+ R E+ H + G + + LI +
Sbjct: 176 HRMLWAGVRPDVYTFPCVLRTCGGIPDLAR--GREVHAH-VVRFGFELDVDVVNALITMY 232
Query: 245 CKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304
K GD+ AR + D M D I++ ++ G+ + G+ L++ M +
Sbjct: 233 VK------CGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMREL 282
Query: 305 GIELDNVAFTALISGFCRGGKVVEAERMLREM----LKVGLKPDDATYTMVIDCFCKNGD 360
++ D + T++IS +++ ER+ REM +K G D + +I + G
Sbjct: 283 SVDPDLMTITSVIS----ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338
Query: 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417
++ M + ++ A+++G K+G A M V PD+IT
Sbjct: 339 WGEAEKVFSRMETKD----AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 78/369 (21%), Positives = 135/369 (36%), Gaps = 88/369 (23%)
Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK------- 176
G++ V V N L+ G +A+ VF + AVS+ +I+G+ K
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKA 373
Query: 177 ----------------------------AKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208
+LD G +L + E G+ V +ALI
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433
Query: 209 LCKENRLDDAELLLHEMCERGLTPNDVI-FTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267
K +D A + H + E+ DVI +T++I G N R EA +M
Sbjct: 434 YSKCKCIDKALEVFHNIPEK-----DVISWTSIIAGLRLNNR------CFEALIFFRQML 482
Query: 268 TNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN----------------- 310
L P+ +T L + G L +I +++ GI D
Sbjct: 483 LT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541
Query: 311 -------------VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC- 356
V++ L++G+ GK A + M++ G+ PD+ T+ ++ C C
Sbjct: 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACS 600
Query: 357 KNGDTKTGFRLLKEMRSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
++G G M + P ++ Y +++ L + G+L A ++ M + PD
Sbjct: 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDP 657
Query: 416 ITYNILLEG 424
+ LL
Sbjct: 658 AVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 3e-09
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 6/39 (15%)
Query: 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266
+GL P+ V + TLIDG C+ GR+D EA +++DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVD------EAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 2e-08
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301
GL PD +TY L+DG C+ G ++ A+++ EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 14/227 (6%)
Query: 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKI 262
++ + LC +L+ A LL M E + ++ + L C+ R G + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEG-SRVCSRA 112
Query: 263 VDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322
+ + G+ +L F + G+L A + +M +R D ++ L+ G+ +
Sbjct: 113 LSSHPSLGVRLG----NAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAK 164
Query: 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382
G EA + ML G++PD T+ V+ D G + + G V+
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224
Query: 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHG 429
NAL+ K G + +A ++ D M D I++N ++ G+ ++G
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENG 267
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 6e-08
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 304 RGIELDNVAFTALISGFCRGGKVVEAERMLREM 336
+G++ D V + LI G CR G+V EA +L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372
GLKPD TY +ID C+ G LL EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 4e-07
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPND 234
TY+ LI+GLCK R+++A L EM ERG+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 5e-07
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309
+TY L+DG CK G +E AL++ KEM +RGIE D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 9e-07
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191
+GL V++NTLI+G C+A +DE L ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGI 306
+TY L+ G+CK G LE AL++ KEM ++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345
V + LI G C+ G+V EA + +EM + G++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 6e-06
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 200 YTYSALINGLCKENRLDDAELLLHEMCERGL 230
TY++LI+G CK +L++A L EM E+G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
TY +ID CK G + L KEM+ G P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 57/239 (23%), Positives = 100/239 (41%), Gaps = 22/239 (9%)
Query: 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257
D+++++ L+ G K D+A L H M G+ P+ F ++ C D+
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT-CGG-----IPDLA 204
Query: 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALI 317
R++ + G D L+ + K GD+ SA + M +R D +++ A+I
Sbjct: 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMI 260
Query: 318 SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS---- 373
SG+ G+ +E + M ++ + PD T T VI GD RL +EM
Sbjct: 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE----RLGREMHGYVVK 316
Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432
G V N+L+ G A + M D +++ ++ G+ K+G P+
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM----ETKDAVSWTAMISGYEKNGLPD 371
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 3e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406
G P V TYN L++GLC+ G++ A LLD M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 311 VAFTALISGFCRGGKVVEAERMLREMLKVGL 341
V + +LISG+C+ GK+ EA + +EM + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415
TYN L++GLCK G+++ A L M + G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 5e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE 154
G P V +N L+ LC+ G++ +A + DE
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV 199
V++NTLI+G CKA ++E L M+ G+ PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 41/185 (22%), Positives = 89/185 (48%), Gaps = 15/185 (8%)
Query: 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS 188
V +N+L+ GK A +F+ + G++ V+F +L+ ++ + +G
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613
Query: 189 VMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN 247
ME + P++ Y+ +++ L + +L +A +++M +TP+ ++ L++ C
Sbjct: 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA-C-- 667
Query: 248 GRIDMAGDMKE-ARKIVDEMCTNGLNPDKITYTILL-DGFCKEGDLESALDIRKEMIKRG 305
RI ++ E A + + E L+P+ + Y ILL + + G + +RK M + G
Sbjct: 668 -RIHRHVELGELAAQHIFE-----LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 306 IELDN 310
+ +D
Sbjct: 722 LTVDP 726
|
Length = 857 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 1e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232
+ TY+AL+ L K D A +L EM GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 410 GVVPDDITYNILLEGHCKHGNPED 433
G+ PD +TYN L++G C+ G ++
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDE 25
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274
V + TLIDG CK GR++ EA ++ EM G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVE------EALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375
TY +I +CK G + L KEM+ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIE 307
TY LL K GD + AL + +EM G++
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 3e-04
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGV 411
TYN+L++G CK G+L+ A L M + GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 4e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413
+ETYNAL+ L K G A +L+ M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 413 PDDITYNILLEGHCKHGNPED----FDKLQSEKGLVSDYACYTSLVS 455
PD +TYN L++G+CK G E+ F++++ ++G+ + Y+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 235 VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271
V + +LI G+CK G ++EA ++ EM G+
Sbjct: 1 VTYNSLISGYCKA------GKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP 378
TY ++ K GD +L+EM++ G P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195
V++N+LI+G+CKA L+E L M+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.72 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.71 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.66 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.64 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.58 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.57 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.55 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.52 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.49 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.47 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.46 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.44 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.43 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.43 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.42 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.4 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.4 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.39 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.37 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.35 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.34 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.31 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.29 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.26 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.25 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.15 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.14 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.12 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.08 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.07 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.07 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.04 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.03 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.02 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.02 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.0 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.96 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.92 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.91 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.9 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.89 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.87 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.87 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.86 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.86 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.86 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.85 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.84 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.83 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.81 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.79 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.78 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.76 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.74 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.69 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.66 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.65 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.64 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.59 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.5 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.45 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.35 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.34 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.32 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.32 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.27 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.26 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.25 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.24 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.23 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.21 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.19 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.1 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.09 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.08 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.07 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.07 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.06 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.06 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.05 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.04 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.01 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.01 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.01 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.01 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.0 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.97 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.97 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.97 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.94 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.93 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.91 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.91 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.91 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.9 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.88 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.86 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.84 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.84 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.83 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.82 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.81 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.77 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.75 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.74 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.74 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.73 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.7 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.69 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.64 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.63 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.62 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.61 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.6 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.56 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.55 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.52 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.47 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.46 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.45 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.44 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.36 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.33 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.3 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.26 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.16 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.11 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.05 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.98 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.98 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.97 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.96 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.96 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.95 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.92 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.83 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.83 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.8 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.8 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.77 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.71 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.67 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.66 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.65 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.63 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.61 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.56 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.54 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.49 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.45 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.43 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.36 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.3 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.3 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.17 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.17 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.17 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.16 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.1 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.09 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.07 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.04 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.02 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.01 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.98 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.97 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.87 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.83 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 95.81 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.79 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.76 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.67 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.63 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.62 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.57 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.56 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.55 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.55 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.34 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.32 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.25 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.2 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.14 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.06 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.04 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.84 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.77 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.74 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.63 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.61 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.51 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.35 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.33 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.33 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.1 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.99 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.94 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.9 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.77 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.68 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.65 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.89 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 92.72 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 92.66 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.35 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.14 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.02 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.85 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.77 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.72 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.68 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.16 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.16 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.15 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.06 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 90.84 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.74 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.71 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.57 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.41 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.4 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.28 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.28 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.17 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.99 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.85 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.77 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 89.74 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.69 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.64 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.56 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.52 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.52 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.41 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.28 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 89.26 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 89.21 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.04 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 88.77 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.66 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 88.49 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.13 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 87.99 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.66 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.63 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.62 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.16 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.08 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.96 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 86.84 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 86.84 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.71 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.87 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 85.83 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.36 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.31 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 85.18 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 84.94 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.31 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.3 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 84.1 | |
| KOG4521 | 1480 | consensus Nuclear pore complex, Nup160 component [ | 83.99 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.93 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 83.72 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 83.55 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.47 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.31 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 82.98 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 82.84 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.81 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 82.31 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 82.31 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 82.0 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 81.83 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 81.71 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.07 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 80.04 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-64 Score=488.14 Aligned_cols=433 Identities=18% Similarity=0.298 Sum_probs=377.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
|+..+|+.++.+|.+.|++++|.++|+.|.+. |..||..+|+.++.+|.+.|++++|.++|++
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-----------------Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~e 497 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA-----------------GLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-----------------CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 56777777777777777777777777777644 7788889999999999999999999999999
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhh--CCCCC
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK--RGLHA 162 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~ 162 (464)
|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|..||..+|+.++.+|++.|++++|.++|++|.. .++.|
T Consensus 498 M~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P 577 (1060)
T PLN03218 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 577 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC
Confidence 9988888899999999999999999999999999999889999999999999999999999999999999976 57788
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 242 (464)
|..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999989889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 047873 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322 (464)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (464)
+|++.|+. ++|.++++.|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 658 a~~k~G~~------eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 658 VAGHAGDL------DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHhCCCH------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99988876 589999999999999999999999999999999999999999999888889999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----c-----
Q 047873 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK----H----- 393 (464)
Q Consensus 323 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----- 393 (464)
.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++..|.+ +
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998899999999999999999999999999999999998999999999988865432 1
Q ss_pred --------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchhHHHHhhcc
Q 047873 394 --------------GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGL---VSDYACYTSLVSK 456 (464)
Q Consensus 394 --------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~p~~~~~~~ll~~ 456 (464)
+..++|..+|++|++.|+.||..||+.++.+++..+..+.+..+++++++ .|+..+|++||.+
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 12367888999999999999999999999777788888888888887654 4457889999998
Q ss_pred chhh
Q 047873 457 SSKY 460 (464)
Q Consensus 457 ~~~~ 460 (464)
++++
T Consensus 892 ~~~~ 895 (1060)
T PLN03218 892 FGEY 895 (1060)
T ss_pred hccC
Confidence 8765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=483.67 Aligned_cols=450 Identities=18% Similarity=0.272 Sum_probs=410.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh---------------cCCCCChhhHHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET---------------RGTHLPGLVLDALMIVY 69 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~ 69 (464)
++...|..++..|.+.|++++|+++|+.|...+-..+...++..++.. .-..|+..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456778888888889999999999999997554344443333322211 01237889999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG--SGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999976 57899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047873 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307 (464)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (464)
.|+.|+..+|+.+|.+|++.|++ ++|.++|++|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~------deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDW------DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999887 699999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 047873 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALM 387 (464)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 387 (464)
|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHh---c
Q 047873 388 NGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK----H-------------------GNPEDFDKLQSE---K 441 (464)
Q Consensus 388 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~---~ 441 (464)
.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..++++ .
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999876542 1 123567788776 5
Q ss_pred CCCCchhHHHHhhccchhh
Q 047873 442 GLVSDYACYTSLVSKSSKY 460 (464)
Q Consensus 442 ~~~p~~~~~~~ll~~~~~~ 460 (464)
|+.||..||.++|.++.+.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~ 860 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLP 860 (1060)
T ss_pred CCCCCHHHHHHHHHHhccc
Confidence 9999999999999766443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-61 Score=476.54 Aligned_cols=440 Identities=19% Similarity=0.243 Sum_probs=329.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh-------------------cCCCCChhh---
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-------------------RGTHLPGLV--- 61 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~--- 61 (464)
++++.+|+.+|.+|.+.|++++|+++|++|.. .|..++..++..+++. .|..|+..+
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 47899999999999999999999999999974 5788887777666553 133444444
Q ss_pred ----------------------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhH
Q 047873 62 ----------------------------LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVT 113 (464)
Q Consensus 62 ----------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 113 (464)
|+.++.+|.+.|++++|+++|++|...|+.|+..+|+.++.++++.|+.+.+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 4555555555555555555555555555566666666666666666666666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
.+++..+.+.|..||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 6666666666666666666667777777777777777777765 346677777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC
Q 047873 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273 (464)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (464)
|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|+++ +|.++|++|.+ +
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~------~A~~vf~~m~~----~ 453 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID------KALEVFHNIPE----K 453 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH------HHHHHHHhCCC----C
Confidence 7777877887777777777777777777777777777777778888888888877664 56665555532 3
Q ss_pred CHHhHHHHHHHHHhCCChHHHHHHHHHH----------------------------------HHcCCCCCHHHHHHHHHH
Q 047873 274 DKITYTILLDGFCKEGDLESALDIRKEM----------------------------------IKRGIELDNVAFTALISG 319 (464)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~ 319 (464)
|..+|+.++.+|++.|+.++|..+|++| .+.|+.++..+++.++.+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 4445555555555555555555555555 444444444455555555
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047873 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 399 (464)
|++.|++++|..+|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|
T Consensus 534 y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 66666666666666554 4788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchhHHHHhhccchhhhhc
Q 047873 400 NMLLDTML-DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQK 463 (464)
Q Consensus 400 ~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 463 (464)
.++|+.|. +.|+.|+..+|+.++.+|++.|++++|.++++++.+.||..+|++|+.+|..+++.
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence 99999999 68999999999999999999999999999999999999999999999999877653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=461.80 Aligned_cols=437 Identities=18% Similarity=0.270 Sum_probs=273.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh-------------------cCCCCChhhHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET-------------------RGTHLPGLVLDAL 65 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l 65 (464)
.+..+|+.++..|.+.|++++|+++|+.|....+..++..++..++.. .|..|+..+++.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345689999999999999999999999997554444444443333322 3555656666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+.+|.+.|++++|.++|++|.+ |+..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|+.++.+|+..|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 6666666666666666665542 455566666666666666666666666666666666666666666666666666
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
+.+.+++..+.+.|+.+|..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666654 345566666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 047873 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305 (464)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (464)
.+.|+.||..+|+.++.+|++.|+. ++|.+++..|.+.|..||..+++.++.+|++.|++++|.++|++|.+
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~------~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALL------EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccch------HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 6666666666666666666665554 36666666666666666666666666666666666666666665543
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCcCHHHHH
Q 047873 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-GHLPAVETYN 384 (464)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 384 (464)
||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+. ++.|+..+|+
T Consensus 389 --~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 389 --KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred --CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 3555666666666666666666666666666666666666666666666666666666666666543 5566666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc-hhHHHHhhccchhhhh
Q 047873 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD-YACYTSLVSKSSKYRQ 462 (464)
Q Consensus 385 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~-~~~~~~ll~~~~~~~~ 462 (464)
.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|.+++++ .++.|+ ..+|..|+..|++.|+
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 6666666666666666665544 3556666666666666666666666665555 455553 4466666666555544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-59 Score=451.88 Aligned_cols=423 Identities=21% Similarity=0.301 Sum_probs=389.4
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhc---------------CCCCChhhHHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETR---------------GTHLPGLVLDALMI 67 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 67 (464)
+.++..+|+.++.++.+.|+++.|.+++..+. ..|..++..++..++... =..|+..+|+.++.
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 55778888888888888888888888888776 456666666666666531 12467799999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh
Q 047873 68 VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (464)
+|.+.|++++|+++|++|.+.|+.|+..+|..++.++.+.|....+.+++..+.+.|..||..+++.|+.+|++.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+
T Consensus 278 A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 278 ARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999974 588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047873 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307 (464)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (464)
.|+.||..+|+.++.+|++.|++ ++|.++|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~------~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRM------EDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCH------HHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999887 699999999954 78899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 047873 308 LDNVAFTALISGFCRGGKVVEAERMLREMLK-VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386 (464)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 386 (464)
||..+|+.++.+|.+.|..++|..+|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++ ++.|+..+|+++
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~L 500 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAAL 500 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHH
Confidence 9999999999999999999999999999986 589999999999999999999999999998765 467999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh---cCCCC
Q 047873 387 MNGLCKHGQLKNANMLLDTMLDLGVVP-DDITYNILLEGHCKHGNPEDFDKLQSE---KGLVS 445 (464)
Q Consensus 387 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~p 445 (464)
+.+|...|+++.|..+++++.+ +.| +..+|..+++.|++.|++++|.+++++ .|+.+
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999975 455 577999999999999999999999876 46643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=458.72 Aligned_cols=453 Identities=18% Similarity=0.227 Sum_probs=337.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh--------------cC-CCCChhhHHHHH
Q 047873 2 HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET--------------RG-THLPGLVLDALM 66 (464)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~l~ 66 (464)
+++++..+|..++.++...+.++.|..++..+++. +......+...++.. .. .+||..+|+.++
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS-HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence 45677777777777777777777777777776633 333333333332221 01 245668999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 047873 67 IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK 146 (464)
Q Consensus 67 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (464)
.+|.+.|++++|+++|++|...|+.|+..+|..++.+|...++...+.+++..+.+.|..||..+++.++.+|++.|+++
T Consensus 160 ~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 239 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH
Confidence 99999999999999999999888889988888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
.|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.
T Consensus 240 ~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 240 SARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred HHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 88888888763 56778888888888888888888888888888888888888888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCccc-------------------------ccCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 047873 227 ERGLTPNDVIFTTLIDGHCKNGRIDM-------------------------AGDMKEARKIVDEMCTNGLNPDKITYTIL 281 (464)
Q Consensus 227 ~~~~~~~~~~~~~l~~~~~~~~~~~~-------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 281 (464)
+.|+.||..+|+.++.+|++.|+++. .|++++|+++|++|...|+.||..+|+.+
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 77777787777777777777776643 24445666666666666666666666666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 047873 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361 (464)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 361 (464)
+.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCH
Confidence 666666666666666666666666666666666666666666666666666655532 2333344444444444444
Q ss_pred HHHHHHHHHHHhC----------------------------------CC------------------------------C
Q 047873 362 KTGFRLLKEMRSD----------------------------------GH------------------------------L 377 (464)
Q Consensus 362 ~~a~~~~~~~~~~----------------------------------~~------------------------------~ 377 (464)
++|..+|++|... |+ .
T Consensus 472 ~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~ 551 (857)
T PLN03077 472 FEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE 551 (857)
T ss_pred HHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcC
Confidence 4444444444321 11 3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh----cCCCCchhHHHHh
Q 047873 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE----KGLVSDYACYTSL 453 (464)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~p~~~~~~~l 453 (464)
||..+|++++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.+++++ .|+.|+..+|++|
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 566778899999999999999999999999999999999999999999999999999998875 5899999999999
Q ss_pred hccchhhhhc
Q 047873 454 VSKSSKYRQK 463 (464)
Q Consensus 454 l~~~~~~~~~ 463 (464)
++++++.|+.
T Consensus 632 v~~l~r~G~~ 641 (857)
T PLN03077 632 VDLLGRAGKL 641 (857)
T ss_pred HHHHHhCCCH
Confidence 9999998863
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-29 Score=252.99 Aligned_cols=423 Identities=14% Similarity=0.072 Sum_probs=282.4
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
.|.++..|..++.++...|++++|.+.|++++. ..|+. .++..++..+...|++++|.+.
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALS-------------------IEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh-------------------hCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345666777777777777777777777777662 23333 5666677777777777777777
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (464)
|+++...+ +.+..++..+...+...|++++|..+++++.+.++. +...+..++..+...|++++|..+++.+.... +
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 77776654 345566666777777777777777777777665543 55566667777777777777777777776543 3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047873 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241 (464)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 241 (464)
.+...|..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|..+|+++.+.. +.+...+..+.
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 455667777777777777777777777776543 3345566667777777777777777777776653 22466666777
Q ss_pred HHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 047873 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321 (464)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (464)
..+...|++ ++|..+++.+.... +.+...+..+...+...|++++|...++.+...+. +..++..+..++.
T Consensus 677 ~~~~~~~~~------~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~ 747 (899)
T TIGR02917 677 QLLLAAKRT------ESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALL 747 (899)
T ss_pred HHHHHcCCH------HHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHH
Confidence 777776655 47777777776654 33555666677777777777777777777776643 3356666677777
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 047873 322 RGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM 401 (464)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 401 (464)
+.|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. +.++..++.+...+...|+ .+|+.
T Consensus 748 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 7777777777777776654 4456667777777777777777777777777653 3466667777777777777 66777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCC-chhHHHHhhccchhhhh
Q 047873 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVS-DYACYTSLVSKSSKYRQ 462 (464)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p-~~~~~~~ll~~~~~~~~ 462 (464)
+++++.+.. +.+..++..+..++...|++++|.+.+++ +...| +..++..+...+.+.|+
T Consensus 825 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 825 YAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 777776542 23555666677777777777777777776 44444 56666666655555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-28 Score=247.44 Aligned_cols=401 Identities=12% Similarity=0.049 Sum_probs=353.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|.+..++..++..+...|++++|.+.|++++. ..|+. .++..+...+.+.|++++|+.+|
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLT-------------------IDPKNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------hCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55677889999999999999999999999984 33444 88999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
+++...+ +.+...+..++..+...|++++|..+++.+.+..+ .+...|..+..++...|++++|...|+.+.+.. +.
T Consensus 557 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 633 (899)
T TIGR02917 557 EKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD 633 (899)
T ss_pred HHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 9998876 55677888899999999999999999999987654 478899999999999999999999999998764 44
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 242 (464)
+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.. +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 67788899999999999999999999998764 4467889999999999999999999999998875 347778888888
Q ss_pred HHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 047873 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322 (464)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (464)
.+...|++ ++|...|+.+.... |+..++..++.++.+.|++++|.+.++.+.+..+. +...+..+...|..
T Consensus 712 ~~~~~g~~------~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~ 782 (899)
T TIGR02917 712 LYLRQKDY------PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLA 782 (899)
T ss_pred HHHHCCCH------HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 99988876 69999999998864 44467788899999999999999999999987654 78899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 047873 323 GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANML 402 (464)
Q Consensus 323 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 402 (464)
.|++++|..+|+++.+.. +.+...+..+...+...|+ .+|+..++++.+.. +-+...+..+...+...|++++|.++
T Consensus 783 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred CcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999876 5678899999999999999 88999999998863 33567788899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 047873 403 LDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEK 441 (464)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 441 (464)
++++.+.+. .+..++..+..++.+.|++++|.++++++
T Consensus 860 ~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 860 LRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998753 38999999999999999999999999873
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-24 Score=184.80 Aligned_cols=424 Identities=16% Similarity=0.116 Sum_probs=345.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCC----------------hHHHHHHHHHhcCCCCCh-hhHHHHHHHHHh
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGS----------------SASLFASILETRGTHLPG-LVLDALMIVYVD 71 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 71 (464)
....|.+-+.+.|++++|++....+-.+..... +...--+.... ...|.- .+|+.+.+.+..
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~-r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAI-RKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhh-hccchHHHHHHHHHHHHHH
Confidence 345677888899999999998776654333221 11111112222 233333 899999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (464)
.|++++|+..++.+.+.. +-..++|..+..++...|+.+.|.+.|...++.++. .....+.+...+-..|+.++|...
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchhHHH
Confidence 999999999999999986 446889999999999999999999999999986532 334445566667778999999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD-VYTYSALINGLCKENRLDDAELLLHEMCERGL 230 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 230 (464)
|.+..+.. +--...|+.|...+-..|+...|++.|++.... .|+ ...|-.|...|...+.+++|...|.+....
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 98877652 223678999999999999999999999999876 444 567889999999999999999999998876
Q ss_pred CC-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 047873 231 TP-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD-KITYTILLDGFCKEGDLESALDIRKEMIKRGIEL 308 (464)
Q Consensus 231 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 308 (464)
.| ....+..+...|...|.. +-|+..+++.+.. .|+ ...|+.|..++-..|+..+|.+.+.+.+...+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~l------dlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~- 352 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLL------DLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN- 352 (966)
T ss_pred CCcchhhccceEEEEeccccH------HHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-
Confidence 34 466677777778887776 5999999999885 444 678999999999999999999999999988654
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHH
Q 047873 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALM 387 (464)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 387 (464)
.....+.|...+...|.++.|..+|....+.. +--...++.|...|-++|++++|+..|++.+. +.|+ ...|+.+.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 57789999999999999999999999998853 22356789999999999999999999999998 5666 56899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc-hhHHHHhh
Q 047873 388 NGLCKHGQLKNANMLLDTMLDLGVVPD-DITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD-YACYTSLV 454 (464)
Q Consensus 388 ~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~-~~~~~~ll 454 (464)
..|-..|+.+.|...+.+.+. +.|. ...++-|...|..+|++.+|+.-+++ +.++|| +..+-.++
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 999999999999999999986 4564 66788999999999999999999998 889998 33333333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-21 Score=184.80 Aligned_cols=406 Identities=10% Similarity=-0.043 Sum_probs=297.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
..+...+..+...|++++|++.|++++ ...|+...|..+..+|.+.|++++|++.++...+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al-------------------~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~ 188 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAI-------------------ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALE 188 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346678899999999999999999998 5677778899999999999999999999999998
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhh----------
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK---------- 157 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------- 157 (464)
.+ |....++..+..++...|++++|+.-+..+...+...+... ..++..+........+...++.-..
T Consensus 189 l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~ 266 (615)
T TIGR00990 189 LD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGN 266 (615)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 86 45677899999999999999999988877665432212211 1111111110001111111110000
Q ss_pred ---------------C--CCCCC-cccHHHHHHHH---HhcCChhHHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC
Q 047873 158 ---------------R--GLHAT-AVSFNTLINGH---CKAKNLDEGFRLKSVMEGSG-MRP-DVYTYSALINGLCKENR 214 (464)
Q Consensus 158 ---------------~--~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 214 (464)
. ...+. ...+..+...+ ...+++++|.+.|+...+.+ ..| ....+..+..++...|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~ 346 (615)
T TIGR00990 267 YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK 346 (615)
T ss_pred HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Confidence 0 00000 01111111111 12467899999999998764 223 45678888889999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHH
Q 047873 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA 294 (464)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 294 (464)
+++|+..|++..+... .....|..+...+...|++ ++|...|+++.... +.+..++..+...+...|++++|
T Consensus 347 ~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~------~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 347 HLEALADLSKSIELDP-RVTQSYIKRASMNLELGDP------DKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred HHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999988632 2466788888888888776 69999999998764 33577888899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
...|++.++..+. +...+..+...+.+.|++++|+..+++..+.. +.+...++.+...+...|++++|.+.|++....
T Consensus 419 ~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 419 GKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 9999999988654 67778888999999999999999999998764 446788999999999999999999999999886
Q ss_pred CCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCC
Q 047873 375 GHLPAV------ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVS 445 (464)
Q Consensus 375 ~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p 445 (464)
....+. ..++..+..+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|.+++++ ..+.+
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 321111 112222333445799999999999988753 23556788899999999999999999987 34444
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-21 Score=200.61 Aligned_cols=415 Identities=10% Similarity=0.024 Sum_probs=307.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
|.+..++..|+.+|.+.|++++|+..|++++..............++.. ..-.........+.+.|++++|+..|+
T Consensus 300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~----~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV----NRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh----hhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4567788888888888888888888888887432211111111111100 000112234567789999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC---
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL--- 160 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 160 (464)
++.... |.+..++..+...+...|++++|++.|+++++..+. +...+..+...+. .++.++|..+++.+.....
T Consensus 376 ~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 376 QARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 999886 456777888999999999999999999999987654 5667777777774 4678999998877643210
Q ss_pred -----CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047873 161 -----HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDV 235 (464)
Q Consensus 161 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 235 (464)
......+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++++.+.... +..
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHH
Confidence 0012345567778889999999999999998764 335667788999999999999999999999876422 444
Q ss_pred HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH---------hHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 047873 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI---------TYTILLDGFCKEGDLESALDIRKEMIKRGI 306 (464)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (464)
.+..+...+...++. ++|+..++.+......++.. .+......+...|+.++|..+++. .
T Consensus 531 ~~~a~al~l~~~~~~------~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~ 599 (1157)
T PRK11447 531 QVYAYGLYLSGSDRD------RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----Q 599 (1157)
T ss_pred HHHHHHHHHHhCCCH------HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----C
Confidence 444444445555554 68999888765432222211 123456778899999999999872 2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 047873 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386 (464)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 386 (464)
+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..+...|++++|++.++.+.+.. +.+...+..+
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~l 677 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRV 677 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHH
Confidence 3466778889999999999999999999999875 4567889999999999999999999999888752 2356677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 387 MNGLCKHGQLKNANMLLDTMLDLGV--VP---DDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 387 ~~~~~~~g~~~~a~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
..++...|++++|.++++++..... .| +...+..+...+...|++++|.+.+++
T Consensus 678 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8999999999999999999986421 12 224566678889999999999999887
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=177.80 Aligned_cols=380 Identities=17% Similarity=0.096 Sum_probs=320.4
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.-.++|+-+.+.+-.+|++.+|+.+|+.++ ...|+. ..|..+..++...|+.+.|.+.|.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~ai-------------------el~p~fida~inla~al~~~~~~~~a~~~~~ 174 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAI-------------------ELKPKFIDAYINLAAALVTQGDLELAVQCFF 174 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHH-------------------hcCchhhHHHhhHHHHHHhcCCCcccHHHHH
Confidence 446789999999999999999999999999 667777 999999999999999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (464)
...+.+ |...-....+...+...|+..+|...|.+.++..+. -..+|+.|...+-..|+.-.|++.|++..+. .|+
T Consensus 175 ~alqln-P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~ 250 (966)
T KOG4626|consen 175 EALQLN-PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN 250 (966)
T ss_pred HHHhcC-cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc
Confidence 988875 222333445666667789999999999999986543 5678999999999999999999999999876 444
Q ss_pred -cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047873 164 -AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP-DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241 (464)
Q Consensus 164 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 241 (464)
...|-.|...|...+.++.|...|.+.... .| ....+..+...|...|.++-|+..|++..+..+. =...|+.|.
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nla 327 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLA 327 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHH
Confidence 578999999999999999999999988765 44 4667888888999999999999999999987322 367899999
Q ss_pred HHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 047873 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321 (464)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (464)
.++...|++ .+|...+.+.....+ ......+.|..++...|.++.|..+|....+-.+. -...++.|...|-
T Consensus 328 nALkd~G~V------~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 328 NALKDKGSV------TEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYK 399 (966)
T ss_pred HHHHhccch------HHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHH
Confidence 999998877 599999999987532 23567888999999999999999999999887433 3567899999999
Q ss_pred ccCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHH
Q 047873 322 RGGKVVEAERMLREMLKVGLKPD-DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 399 (464)
++|++++|+..+++..+. .|+ ...|+.+...|-..|+.+.|.+.+.+.+.. .|. ...++.|...|-..|+..+|
T Consensus 400 qqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred hcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHH
Confidence 999999999999999885 555 578999999999999999999999999985 444 56789999999999999999
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHHH
Q 047873 400 NMLLDTMLDLGVVPDD-ITYNILLEG 424 (464)
Q Consensus 400 ~~~~~~~~~~~~~p~~-~~~~~l~~~ 424 (464)
+.-++..++ ++||. ..+--++.+
T Consensus 476 I~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 476 IQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHc--cCCCCchhhhHHHHH
Confidence 999999986 56763 334444443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-20 Score=193.39 Aligned_cols=419 Identities=11% Similarity=0.041 Sum_probs=269.8
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCC------------------ChHHHHHHHHHhcCC---------
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG------------------SSASLFASILETRGT--------- 55 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~--------- 55 (464)
.|.++..+..+..++...|++++|++.|+++....... .+...+...+.....
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~ 256 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARS 256 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHH
Confidence 36678889999999999999999999999987532211 001111111111000
Q ss_pred --------CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC
Q 047873 56 --------HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126 (464)
Q Consensus 56 --------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 126 (464)
.++. .........+...|++++|+..|++..+.. |.+..++..+...+.+.|++++|+..|+++++..+.
T Consensus 257 ~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 257 QLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 0011 111233566788899999999999998875 457788899999999999999999999999886643
Q ss_pred CCh-hhH------------HHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 127 PSV-YVF------------NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 127 ~~~-~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
... ..+ ......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 221 111 123456778999999999999998874 345667778889999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHH
Q 047873 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT--------PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265 (464)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~ 265 (464)
. +.+...+..+...+. .++.++|+.+++.+...... .....+..+...+...|++ ++|++.|++
T Consensus 415 ~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~------~eA~~~~~~ 486 (1157)
T PRK11447 415 D-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKW------AQAAELQRQ 486 (1157)
T ss_pred C-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCH------HHHHHHHHH
Confidence 3 223444444444442 23444444444433211000 0011122233333333333 355555555
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH--------------------------------
Q 047873 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF-------------------------------- 313 (464)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------------- 313 (464)
.....+ -+...+..+...|.+.|++++|...++++.+..+. +...+
T Consensus 487 Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 487 RLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 444321 12333444444445555555555555544443221 22222
Q ss_pred ------------HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH
Q 047873 314 ------------TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE 381 (464)
Q Consensus 314 ------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 381 (464)
..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+..
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~ 638 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNAD 638 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 2234455566666666666651 24556677888899999999999999999999863 33678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 382 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
.+..++..|...|++++|++.++.+.+.. +.+...+..+..++...|++++|.+++++
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88999999999999999999999887642 23566677788889999999999999998
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-21 Score=181.86 Aligned_cols=334 Identities=11% Similarity=0.018 Sum_probs=271.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
..++..+.+.|++++|+.+++.++ ...|+. ..+..++......|++++|+..|+++....
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l-------------------~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~ 106 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRV-------------------LTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN 106 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHH-------------------HhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC
Confidence 345666778899999999999988 344555 778888888889999999999999999886
Q ss_pred CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHH
Q 047873 90 FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 169 (464)
|.+...+..+...+...|++++|...+++++...+. +...+..++..+...|++++|...++.+.... +.+...+..
T Consensus 107 -P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~ 183 (656)
T PRK15174 107 -VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIAT 183 (656)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 556788899999999999999999999999987654 67888899999999999999999999887653 223333433
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGR 249 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (464)
+ ..+...|++++|...++.+.+....++......+...+...|++++|+..++++.+... .+...+..+...+...|+
T Consensus 184 ~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 184 C-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGR 261 (656)
T ss_pred H-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Confidence 3 45788999999999999987764333445556667888999999999999999998753 367778889999999998
Q ss_pred cccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHH
Q 047873 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEA 329 (464)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 329 (464)
++. ...+|...|++.....+ .+...+..+...+...|++++|...+++..+..+. +...+..+..++.+.|++++|
T Consensus 262 ~~e--A~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 262 SRE--AKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred chh--hHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 740 01148999999988643 35778899999999999999999999999987654 567788889999999999999
Q ss_pred HHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 330 ERMLREMLKVGLKPDD-ATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 330 ~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
...++++...+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 338 ~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 338 SDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998864 443 33445677889999999999999999886
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-22 Score=181.64 Aligned_cols=303 Identities=15% Similarity=0.112 Sum_probs=212.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhc
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS---VYVFNVLMHKLCKE 142 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 142 (464)
...+...|++++|+..|+++.+.+ +.+..++..++..+...|++++|..+++.+......++ ...+..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334566677777888887777765 34556677777777777888888777777776432211 24566777777888
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChhHH
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD----VYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 218 (464)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888877653 34566777777888888888888888887776542221 12345667777788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHH
Q 047873 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (464)
.+.|+++.+.. +.+...+..+...+.+.|++ ++|.++++++...+......++..++.+|...|++++|...+
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDY------AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888877653 22455666777778877765 588888888876533322456777788888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCChHHHHHHHHHHHhCC
Q 047873 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK---NGDTKTGFRLLKEMRSDG 375 (464)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~ 375 (464)
+.+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.+
T Consensus 273 ~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 273 RRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 8887764 45555677788888888888888888887775 4777777777766654 457788888888888765
Q ss_pred CCcCHH
Q 047873 376 HLPAVE 381 (464)
Q Consensus 376 ~~~~~~ 381 (464)
+.|++.
T Consensus 349 ~~~~p~ 354 (389)
T PRK11788 349 LKRKPR 354 (389)
T ss_pred HhCCCC
Confidence 555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-22 Score=180.08 Aligned_cols=313 Identities=15% Similarity=0.144 Sum_probs=246.6
Q ss_pred HHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC---cccHHHHHHHHHh
Q 047873 100 LIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT---AVSFNTLINGHCK 176 (464)
Q Consensus 100 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 176 (464)
....+...|++++|+..|.++.+.++. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344567789999999999999987654 677889999999999999999999999887532111 2457788899999
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCccc
Q 047873 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND----VIFTTLIDGHCKNGRIDM 252 (464)
Q Consensus 177 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 252 (464)
.|++++|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.+++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-- 196 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL-- 196 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH--
Confidence 999999999999998753 456778899999999999999999999999876533321 2344566667777765
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 047873 253 AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERM 332 (464)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (464)
++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...
T Consensus 197 ----~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 197 ----DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred ----HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 69999999988753 2345677778888999999999999999988765433356678888899999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 047873 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK---HGQLKNANMLLDTMLDL 409 (464)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 409 (464)
++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.
T Consensus 272 l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 9998876 366666788888999999999999999988875 5788888888877664 55888999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH
Q 047873 410 GVVPDDITYNILLEGHCKHGNP 431 (464)
Q Consensus 410 ~~~p~~~~~~~l~~~~~~~g~~ 431 (464)
++.|++. .+|.+.|-.
T Consensus 348 ~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 348 QLKRKPR------YRCRNCGFT 363 (389)
T ss_pred HHhCCCC------EECCCCCCC
Confidence 7777766 335555543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-20 Score=177.05 Aligned_cols=334 Identities=10% Similarity=0.025 Sum_probs=272.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.-...++..+.+.|++++|+.+++.+.... +-+...+..++......|+++.|...++++.+..+. +...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 344556667889999999999999998886 445667777778888899999999999999998765 788889999999
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 219 (464)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999998863 44567888899999999999999999998876532 233333333 4578899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHH----HH
Q 047873 220 LLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES----AL 295 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~ 295 (464)
..++.+.+....++...+..+...+...|++ ++|...++++.... +.+...+..+...+...|++++ |.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~------~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKY------QEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCH------HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 9999988764434455555566778877776 69999999998864 3356778889999999999986 89
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047873 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 375 (464)
..++.+.+..+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+..++.+.|++++|...|+++...
T Consensus 271 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~- 347 (656)
T PRK15174 271 EHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE- 347 (656)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999999987654 77889999999999999999999999999875 345667888899999999999999999999885
Q ss_pred CCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 376 HLPAV-ETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 376 ~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
.|+. ..+..+..++...|++++|...|+++.+.
T Consensus 348 -~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 348 -KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3443 33444577889999999999999998864
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-19 Score=176.60 Aligned_cols=409 Identities=10% Similarity=-0.002 Sum_probs=307.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+.--.-.+.+..-.|+.++|++++.++.. ..+.+...+..+...+.+.|++++|+++|++..
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~------------------~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al 76 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRV------------------HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKAL 76 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334455667789999999999999872 123334679999999999999999999999998
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCccc
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (464)
+.. |.+...+..++..+...|++++|+..++++++..+. +.. +..+..++...|++++|...++++.+.. +.+...
T Consensus 77 ~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~ 152 (765)
T PRK10049 77 SLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQY 152 (765)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 885 556777888889999999999999999999987654 666 8889999999999999999999999874 335566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHh-----cCCh---hHHHHHHHHHHHC-CCC
Q 047873 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV------YTYSALINGLCK-----ENRL---DDAELLLHEMCER-GLT 231 (464)
Q Consensus 167 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~ 231 (464)
+..+..++...+..+.|+..++.... .|+. .....+++.... .+++ ++|++.++.+.+. ...
T Consensus 153 ~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 153 PTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 67788888889999999999987664 2221 112223333322 2234 7788889888864 222
Q ss_pred CCHH-HHH----HHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 047873 232 PNDV-IFT----TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN-PDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305 (464)
Q Consensus 232 ~~~~-~~~----~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (464)
|+.. .+. ..+..+...+++ ++|+..|+.+...+.+ |+. ....+..++...|++++|+..|+.+.+..
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~------~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRY------KDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhH------HHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 2221 111 113344455554 6999999999887532 332 22335778999999999999999988764
Q ss_pred CCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCC-----------CCC---HhhHHHHHHHHHhcCChHHHHHHH
Q 047873 306 IEL---DNVAFTALISGFCRGGKVVEAERMLREMLKVGL-----------KPD---DATYTMVIDCFCKNGDTKTGFRLL 368 (464)
Q Consensus 306 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~ll~~~~~~~~~~~a~~~~ 368 (464)
... .......+..++.+.|++++|..+++.+..... .|+ ...+..+...+...|+.++|++++
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 321 134566677788999999999999999987531 122 234566778889999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc
Q 047873 369 KEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-DDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD 446 (464)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~ 446 (464)
+++... .+.+...+..+...+...|++++|++.+++..+. .| +...+...+..+.+.|++++|.+++++ ....|+
T Consensus 383 ~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 383 RELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999886 3446788899999999999999999999999975 45 467777788889999999999999988 566676
Q ss_pred hhHH
Q 047873 447 YACY 450 (464)
Q Consensus 447 ~~~~ 450 (464)
....
T Consensus 460 ~~~~ 463 (765)
T PRK10049 460 DPGV 463 (765)
T ss_pred CHHH
Confidence 5443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-18 Score=165.02 Aligned_cols=411 Identities=12% Similarity=0.036 Sum_probs=261.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|..+.+-..-+-..++.|+++.|++.|++++ ...|+. .....++..+...|+.++|+.++
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL-------------------~~~P~~~~av~dll~l~~~~G~~~~A~~~~ 91 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEES-------------------KAGPLQSGQVDDWLQIAGWAGRDQEVIDVY 91 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHH-------------------hhCccchhhHHHHHHHHHHcCCcHHHHHHH
Confidence 3344455555566889999999999999998 456665 23337888888899999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
++..... +.+......+...+...|++++|+++|+++++..+. ++..+..++..+...++.++|++.++++... .|
T Consensus 92 eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp 167 (822)
T PRK14574 92 ERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DP 167 (822)
T ss_pred HHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--Cc
Confidence 9988221 233444444566888899999999999999998776 6778888888999999999999999999877 45
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-----------------
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM----------------- 225 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------------- 225 (464)
+...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-
T Consensus 168 ~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~ 246 (822)
T PRK14574 168 TVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAA 246 (822)
T ss_pred chHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHH
Confidence 55555444444444666666999999998874 335666666777777666655555444432
Q ss_pred -------------------------------HHC-CCCCCH-HHH----HHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 226 -------------------------------CER-GLTPND-VIF----TTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 226 -------------------------------~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
... +..|.. ..| .-.+-++...++ +.++++.|+.+..
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r------~~~vi~~y~~l~~ 320 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ------TADLIKEYEAMEA 320 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh------HHHHHHHHHHhhh
Confidence 111 000110 111 011222233332 3566666777666
Q ss_pred CCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCC--
Q 047873 269 NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI-----ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGL-- 341 (464)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 341 (464)
.+.+....+-..+..+|...+++++|..+++.+..... .++......|..++...+++++|..+++++.+...
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 55443444566666777777777777777776655421 12233345666667777777777777777665210
Q ss_pred ---------CCC--H-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 342 ---------KPD--D-ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 342 ---------~~~--~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
.|+ - ..+..++..+...|+..+|++.++++... -+-|......+...+...|.+.+|.+.++.....
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 011 1 12334455566667777777777777654 2336666666677777777777777777555533
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCch
Q 047873 410 GVVP-DDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDY 447 (464)
Q Consensus 410 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~ 447 (464)
.| +..+....+.++...|++++|.+++++ ....|+.
T Consensus 480 --~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 480 --APRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred --CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 33 455555666666667777777666655 3444543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-18 Score=169.23 Aligned_cols=188 Identities=13% Similarity=-0.038 Sum_probs=114.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
+......+...|++++|+..|++++ ...|++ .++..++..|...|++++|+..+++..+.
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al-------------------~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l 107 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIH-------------------QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR 107 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3344444556699999999999998 556666 88888888999999999999999988887
Q ss_pred CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH--------HHhcCChhhHHHHHHHHhhCCC
Q 047873 89 YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK--------LCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
+ |-+...+..+ ..+ +++++|..+++++.+..+. +..++..+... |.+. ++|.+.++ ......
T Consensus 108 d-P~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~ 177 (987)
T PRK09782 108 H-PGDARLERSL-AAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAA 177 (987)
T ss_pred C-cccHHHHHHH-HHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCC
Confidence 5 3233333333 222 8888888888888876654 44444444443 3333 34444443 222211
Q ss_pred CCCcccHHHH-HHHHHhcCChhHHHHHHHHHhhCCC------------------------------CCCHHHHHHHHHHH
Q 047873 161 HATAVSFNTL-INGHCKAKNLDEGFRLKSVMEGSGM------------------------------RPDVYTYSALINGL 209 (464)
Q Consensus 161 ~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~ 209 (464)
.|+..+.... ...|.+.+++++|++++.++.+.+. +.+...+..+...|
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~y 257 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATAL 257 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHH
Confidence 2233333333 6666666666666666666655431 12334444555556
Q ss_pred HhcCChhHHHHHHHHHH
Q 047873 210 CKENRLDDAELLLHEMC 226 (464)
Q Consensus 210 ~~~~~~~~a~~~~~~~~ 226 (464)
.+.|+.++|.++++++.
T Consensus 258 i~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 258 AYRGEKARLQHYLIENK 274 (987)
T ss_pred HHCCCHHHHHHHHHhCc
Confidence 66666666666666553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-18 Score=167.54 Aligned_cols=371 Identities=14% Similarity=0.000 Sum_probs=272.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
.|+...|..+..+|...|++++|++.+.+++ ...|+. .+|..+..+|...|++++|+..|
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al-------------------~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAAL-------------------ELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHH-------------------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567789999999999999999999999999 566766 89999999999999999999988
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-----------------------------CCh---h
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-----------------------------PSV---Y 130 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------------~~~---~ 130 (464)
..+...+ +.+......++..+.. ..+.......++..+. .+. .
T Consensus 218 ~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 218 TASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 7765543 1111111111111111 0111111111111100 000 1
Q ss_pred hHHHHHHH---HHhcCChhhHHHHHHHHhhCC-C-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 047873 131 VFNVLMHK---LCKEGKIKDAQMVFDEFGKRG-L-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205 (464)
Q Consensus 131 ~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (464)
.+..+... ....+++++|.+.|+.....+ . +.....+..+...+...|++++|...++...... +.....|..+
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~l 371 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKR 371 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 11111111 123468899999999988764 1 2245568888888999999999999999998763 2346688889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047873 206 INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285 (464)
Q Consensus 206 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (464)
..++...|++++|...|+++.+... .+...+..+...+...|++ ++|+..|++.....+ .+...+..+..++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~------~~A~~~~~kal~l~P-~~~~~~~~la~~~ 443 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEF------AQAGKDYQKSIDLDP-DFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCc-cCHHHHHHHHHHH
Confidence 9999999999999999999988743 3678888888899988876 699999999988643 3567788889999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHh------hHHHHHHHHHhcC
Q 047873 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA------TYTMVIDCFCKNG 359 (464)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~~ 359 (464)
.+.|++++|+..++..++..+. +...++.+...+...|++++|...|++........+.. .++..+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 9999999999999999987433 67889999999999999999999999998764221111 1122223344579
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
++++|.+++++..+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999988863 234567889999999999999999999998864
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-19 Score=174.10 Aligned_cols=387 Identities=13% Similarity=0.050 Sum_probs=292.2
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
-+.+..++..+..++...|++++|+++|++++ ...|++ ..+..++.++...|++++|+..
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al-------------------~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKAL-------------------SLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 35667779999999999999999999999998 444554 7788899999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (464)
++++.... |.+.. +..+..++...|++++|+..++++++..+. +...+..+..++...+..+.|++.++.... .
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~ 179 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---T 179 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---C
Confidence 99999885 45566 888899999999999999999999998765 677777788888899999999999987654 1
Q ss_pred CCc------ccHHHHHHHHH-----hcCCh---hHHHHHHHHHhhC-CCCCCHH-HHH----HHHHHHHhcCChhHHHHH
Q 047873 162 ATA------VSFNTLINGHC-----KAKNL---DEGFRLKSVMEGS-GMRPDVY-TYS----ALINGLCKENRLDDAELL 221 (464)
Q Consensus 162 ~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~ 221 (464)
|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++++|++.
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 221 11222222222 12234 6788888888754 1223221 111 113445677999999999
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhCCChHHHHHH
Q 047873 222 LHEMCERGLT-PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP---DKITYTILLDGFCKEGDLESALDI 297 (464)
Q Consensus 222 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 297 (464)
|+.+.+.+.. |+. ....+...|...|++ ++|+..|+++....... .......+..++...|++++|..+
T Consensus 260 ~~~ll~~~~~~P~~-a~~~la~~yl~~g~~------e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 260 YQRLKAEGQIIPPW-AQRWVASAYLKLHQP------EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHhhccCCCCCHH-HHHHHHHHHHhcCCc------HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 9999987532 322 222256678888877 69999999987653221 124456667788999999999999
Q ss_pred HHHHHHcCC-----------CCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH
Q 047873 298 RKEMIKRGI-----------ELD---NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363 (464)
Q Consensus 298 ~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 363 (464)
++.+....+ .|+ ...+..+...+...|+.++|+.+++++.... +.+...+..+...+...|++++
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 999987642 123 2345667788899999999999999998874 5567888999999999999999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047873 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425 (464)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (464)
|++.++++.... +.+...+...+..+...|++++|..+++++++. .|+......+-..+
T Consensus 412 A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 412 AENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 999999999963 334667777788899999999999999999974 56665554444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-18 Score=157.85 Aligned_cols=405 Identities=12% Similarity=0.089 Sum_probs=257.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+|.-++++|=..|++++|...|.... +..++. ..+..|+++|...|+.+.+...|+++.
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~-------------------k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESL-------------------KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH-------------------ccCCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 34444444444455555544444444 344444 334455666666666666666666666
Q ss_pred hCCCCCChhcHHHHHHHHHcCC----ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH----hhC
Q 047873 87 KHYFRIPARGCRCLIDRMMRTN----LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF----GKR 158 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~ 158 (464)
... |.+..+...++..|...+ ..++|..++.+..+..+. |...|-.+..++...+-+.. +.+|... ...
T Consensus 370 k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 370 KQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESK 446 (1018)
T ss_pred HhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHc
Confidence 553 334455555555555443 335555555555554433 56666666555554443333 4444332 233
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS---GMRPD------VYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
+-.+.+...|.+...+...|++.+|...|...... ...++ ..+--.+.++.-..++.+.|.+.|..+.+..
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 33455566677777777777777777777665533 11122 1122234555555666777777777766652
Q ss_pred CCCC-HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcC-CC
Q 047873 230 LTPN-DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG-IE 307 (464)
Q Consensus 230 ~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 307 (464)
|. ...|..+.......+ ...+|...+....... ..++..+..+...+.+...+..|.+-|..+.+.- ..
T Consensus 527 --p~YId~ylRl~~ma~~k~------~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 527 --PGYIDAYLRLGCMARDKN------NLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred --chhHHHHHHhhHHHHhcc------CcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 22 233333331111112 2357788887776643 3355566667778888888888888776666542 23
Q ss_pred CCHHHHHHHHHHHhc------------cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047873 308 LDNVAFTALISGFCR------------GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375 (464)
Q Consensus 308 ~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 375 (464)
+|+.+...|.+.|.+ .+..++|+++|.++++.. +-|...-+.+.-+++..|++..|..+|.+.++..
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 577777777776653 245788999999998876 4577888899999999999999999999999973
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc
Q 047873 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLD-LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD 446 (464)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~ 446 (464)
. ....+|-.+.++|..+|++..|+++|+...+ ....-+..+...|.+++.+.|.+.+|.+.+.. +.+.|.
T Consensus 677 ~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 677 S-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred h-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 3 2556788999999999999999999988764 44455888999999999999999999888776 556665
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-16 Score=148.62 Aligned_cols=377 Identities=11% Similarity=0.039 Sum_probs=282.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 047873 63 DALMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141 (464)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (464)
..-+....+.|+++.|+..|++..+.. |.+ ...+ .++..+...|+.++|+..+++..... .........+...+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHH
Confidence 334445678999999999999999886 223 2333 78888888999999999999998311 1123333444668889
Q ss_pred cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047873 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221 (464)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 221 (464)
.|++++|.++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 999999999999999885 345677778889999999999999999999876 56666665555555556777679999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCccc---------------------------------------cc---CHHHH
Q 047873 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDM---------------------------------------AG---DMKEA 259 (464)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------------------------------~~---~~~~a 259 (464)
++++.+..+ -+...+..+..+..+.|-... .+ ..+.|
T Consensus 192 ~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 999998742 255566666666666555432 01 22345
Q ss_pred HHHHHHHHhC-CCCCCH-H----hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 047873 260 RKIVDEMCTN-GLNPDK-I----TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERML 333 (464)
Q Consensus 260 ~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 333 (464)
+.-++.+... +..|.. . ...-.+-++...+++.++++.++.+...+.+....+-..+..+|...+++++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 5555555542 111321 1 122345577889999999999999999887666789999999999999999999999
Q ss_pred HHHHHCC-----CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CcC---HHHHHHHHHHHHhcC
Q 047873 334 REMLKVG-----LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH-----------LPA---VETYNALMNGLCKHG 394 (464)
Q Consensus 334 ~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g 394 (464)
+.+.... .+++......|..++...+++++|..+++.+.+... .|+ ...+..++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9997653 122344467899999999999999999999998411 122 223455677888999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCch
Q 047873 395 QLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDY 447 (464)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~ 447 (464)
++.+|++.++++... -+-|......+...+...|.+.+|.++++. ..+.|+.
T Consensus 431 dl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 431 DLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 999999999999875 355999999999999999999999999976 5667763
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-15 Score=144.55 Aligned_cols=421 Identities=11% Similarity=0.006 Sum_probs=243.6
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhc--CCCChHHHHHHHHHh-----------cCCCCCh-hhHHHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKK--GMGSSASLFASILET-----------RGTHLPG-LVLDALMIV 68 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~l~~~ 68 (464)
+..++..+..++..|.+.|+.++|.+.++++-.-. ...+...++...... ....++- .....++..
T Consensus 243 lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (987)
T PRK09782 243 IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPV 322 (987)
T ss_pred cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHH
Confidence 34678889999999999999999999998864321 122222222211111 0011111 223344677
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
+.+.+.++.+.++.. . .|.......-.......+...++...+..+.+..+. +......+.......|+.++|
T Consensus 323 ~~~~~~~~~~~~~~~----~--~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a 395 (987)
T PRK09782 323 LLKEGQYDAAQKLLA----T--LPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREA 395 (987)
T ss_pred HHhccHHHHHHHHhc----C--CCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHH
Confidence 778888876665532 1 222222111111222335566666666666654333 555555666666677777777
Q ss_pred HHHHHHHhhC-C-CCCCcccHHHHHHHHHhc-------------------------CChhHHHHHHHHHhhC-C-CCC--
Q 047873 149 QMVFDEFGKR-G-LHATAVSFNTLINGHCKA-------------------------KNLDEGFRLKSVMEGS-G-MRP-- 197 (464)
Q Consensus 149 ~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~-------------------------~~~~~a~~~~~~~~~~-~-~~~-- 197 (464)
.++|+..... + ..++....+-++..|.+. |++.++...++..... + .++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~ 475 (987)
T PRK09782 396 ADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSY 475 (987)
T ss_pred HHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCC
Confidence 7777766542 1 111222223344444333 2333333333333322 1 123
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHh
Q 047873 198 DVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT 277 (464)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 277 (464)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++ ++|...|+++... +|+...
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~------eeAi~~~rka~~~--~p~~~a 544 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDY------ATALAAWQKISLH--DMSNED 544 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCH------HHHHHHHHHHhcc--CCCcHH
Confidence 45566666666665 6777777766666655 24433322333333455554 5777777776553 233344
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 047873 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357 (464)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 357 (464)
+..+..++.+.|++++|...++..++.++. ....+..+.....+.|++++|...+++..+. .|+...+..+..++.+
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 555566677777777777777777766422 3333333334444557777777777777765 3566677777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047873 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKL 437 (464)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 437 (464)
.|++++|...+++..... +.+...+..+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|...
T Consensus 622 lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 622 RHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777752 2355666777777777777777777777777642 23566677777777777777777777
Q ss_pred HHh-cCCCCc
Q 047873 438 QSE-KGLVSD 446 (464)
Q Consensus 438 ~~~-~~~~p~ 446 (464)
+++ +.+.|+
T Consensus 700 l~~Al~l~P~ 709 (987)
T PRK09782 700 ARLVIDDIDN 709 (987)
T ss_pred HHHHHhcCCC
Confidence 776 556665
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-16 Score=134.09 Aligned_cols=248 Identities=15% Similarity=0.163 Sum_probs=176.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC-----------------ccc------------ccCHH
Q 047873 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGH-CKNGR-----------------IDM------------AGDMK 257 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-----------------~~~------------~~~~~ 257 (464)
.+.+.|+++.|.+++.-+.+.+-.......+.|-..+ .+.|+ +.. .|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 3678899999999998887663332222222222221 11111 000 47788
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047873 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
+|...+++.......-....|+ +.-.+-..|++++|++.|-++...-. -+...+..+.+.|....+..+|++++-+..
T Consensus 508 ka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 8888888887654332233333 33455677888888888876654321 266777778888888888888888887776
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047873 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT 417 (464)
Q Consensus 338 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 417 (464)
.. ++.|+.+++.|...|-+.|+-.+|.+.+-.--.- ++.+..+..-|...|....-+++++.+|++..- +.|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 54 4667888889999999999988888876554443 556788888888888888888999999988753 6899999
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHh--cCCCCchhHHHHhhccchhhh
Q 047873 418 YNILLEGHC-KHGNPEDFDKLQSE--KGLVSDYACYTSLVSKSSKYR 461 (464)
Q Consensus 418 ~~~l~~~~~-~~g~~~~a~~~~~~--~~~~p~~~~~~~ll~~~~~~~ 461 (464)
|..++..|. +.|+++.|..+++. ..+..|...+.-|++.|+..|
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 988887765 78999999999987 466778888888888888765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-14 Score=120.53 Aligned_cols=392 Identities=13% Similarity=0.168 Sum_probs=258.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh---------------------------------
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET--------------------------------- 52 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 52 (464)
.+++=|.|+.. .-.|..+++--+|+.|.++ +..-+..+-.++++-
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~ 192 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKS 192 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccc
Confidence 34444555553 3477888888888887543 333333333333321
Q ss_pred -------cC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 53 -------RG-THLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 53 -------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
.. .+.++.++..++.++++--+.++|.+++++...........+|+.+|.+-.-. ...++..+|....
T Consensus 193 G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 193 GAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQK 268 (625)
T ss_pred ccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh
Confidence 12 33344888888888888888888888888887776677788888887765332 3367788888888
Q ss_pred CCCChhhHHHHHHHHHhcCChhh----HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhH-HHHHHHHHhh----CCC
Q 047873 125 YSPSVYVFNVLMHKLCKEGKIKD----AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDE-GFRLKSVMEG----SGM 195 (464)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~ 195 (464)
..||..|+|+++.+.++.|+++. |.+++.+|++.|+.|+..+|..+|..+.+.++..+ +..++..+.. ..+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 88888888888888888887765 45677778888888888888888888888777654 3344444432 122
Q ss_pred CC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCcccccCHHHHHHHHH
Q 047873 196 RP----DVYTYSALINGLCKENRLDDAELLLHEMCERG----LTPN---DVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264 (464)
Q Consensus 196 ~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~ 264 (464)
+| +...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+.... +.....|+
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~------~~~~~~Y~ 422 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI------DVTLKWYE 422 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 22 34455667777778888887777766554321 2222 23355566666766554 47788888
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-Ch---H----------HHH
Q 047873 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG-KV---V----------EAE 330 (464)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~----------~a~ 330 (464)
.|...-.-|+..+...++++..-.+.++-.-+++.++...|..........++..+++.. +. + -|.
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 888777778888888888888888888888888888888776555555555555555433 11 0 111
Q ss_pred HHHH-------HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-C---cCHHHHHHHHHHHHhcCCHHHH
Q 047873 331 RMLR-------EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH-L---PAVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 331 ~~~~-------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~a 399 (464)
.+++ ++.+. .......+.++..+.+.|..++|.+++..+.+.+. . |.......+++.-.+.++...|
T Consensus 503 d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1111 22222 33455677777778888888888888888865522 2 3333344556666777788888
Q ss_pred HHHHHHHHhCCC
Q 047873 400 NMLLDTMLDLGV 411 (464)
Q Consensus 400 ~~~~~~~~~~~~ 411 (464)
..+++-|...+.
T Consensus 581 ~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 581 IEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHcCc
Confidence 888888876544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-15 Score=138.80 Aligned_cols=426 Identities=9% Similarity=-0.006 Sum_probs=315.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
+.++.+.+.|.+.|.-.|++..+.++...++..+. .. ..-...+..+.++|...|++++|...|.
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~--------~~-------~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE--------NK-------SIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh--------hh-------HHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56888999999999999999999999999985320 11 1112678889999999999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----ChhhHHHHHHHHhhCC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG----KIKDAQMVFDEFGKRG 159 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~ 159 (464)
...........-.+..++..+.+.|+.+.+...|+.+.+..+. +..+...|...|+..+ ..+.|..++.+..+..
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 8877652222445677889999999999999999999987654 6777777888887775 4566777777766653
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHh----hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCC
Q 047873 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVME----GSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER---GLTP 232 (464)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 232 (464)
+.|...|..+...+....-+.. +.+|.... ..+..+.+...|.+...+...|++..|...|...... ...+
T Consensus 411 -~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred -cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 5577788888887765554444 77776544 3454578888999999999999999999999988755 1122
Q ss_pred CH------HHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 047873 233 ND------VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD-KITYTILLDGFCKEGDLESALDIRKEMIKRG 305 (464)
Q Consensus 233 ~~------~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (464)
+. .+-..+...+...++. +.|.+.|..+... .|+ ...|..++......+...+|...+..++..+
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~------~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDT------EVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhh------hHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 22 1222233344444444 6999999999885 344 3345555544445678889999999998875
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHh------------cCChHHHHHHHHHHH
Q 047873 306 IELDNVAFTALISGFCRGGKVVEAERMLREMLKVG-LKPDDATYTMVIDCFCK------------NGDTKTGFRLLKEMR 372 (464)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~ 372 (464)
-. ++..++.+...+.....+.-|..-|..+.+.. ..+|..+...|...|.+ .+..++|+++|.++.
T Consensus 561 ~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 SS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred cC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 43 67788888888888888888888676665542 23566776677765543 345788999999998
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh----cCCCCchh
Q 047873 373 SDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE----KGLVSDYA 448 (464)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~p~~~ 448 (464)
+.. +.|...-|.+.-.++..|++.+|..+|.+..+.. ..+..+|.-+...|...|++-.|+++++. ..-.-+..
T Consensus 640 ~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 640 RND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred hcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 873 3477777888999999999999999999998763 34677888899999999999999999886 34344566
Q ss_pred HHHHhhccch
Q 047873 449 CYTSLVSKSS 458 (464)
Q Consensus 449 ~~~~ll~~~~ 458 (464)
+...|-++.-
T Consensus 718 vl~~Lara~y 727 (1018)
T KOG2002|consen 718 VLHYLARAWY 727 (1018)
T ss_pred HHHHHHHHHH
Confidence 6666655443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-15 Score=135.78 Aligned_cols=392 Identities=13% Similarity=0.073 Sum_probs=252.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+...-...+.+..+|++++|.+++.+++. ..+....+|..|...|-+.|+.++++..+-.+.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIk------------------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA 200 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIK------------------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA 200 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCccchhhHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44445556667778999999999999994 445555999999999999999999999987776
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCccc
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (464)
... |.+...|..+.....+.|++.+|.-.|.++++..+. +....-.-+..|-+.|+...|...|.++.....+.|..-
T Consensus 201 HL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 201 HLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred hcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 665 556788999999999999999999999999998765 666666677789999999999999999988742222222
Q ss_pred H----HHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047873 167 F----NTLINGHCKAKNLDEGFRLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLI 241 (464)
Q Consensus 167 ~----~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 241 (464)
+ -..++.+...++-+.|.+.++..... +-..+...++.++..+.+...++.|......+......+|...+.+--
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 2 23456667777778898888877652 223456678889999999999999999888887643344443331100
Q ss_pred HHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 047873 242 DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG--IELDNVAFTALISG 319 (464)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 319 (464)
.++. ....++. ...+..++..+ ..++-++...+..+....+........ +.-+...|..+..+
T Consensus 359 -----~~~~-------~~~~~~~--~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~a 423 (895)
T KOG2076|consen 359 -----RRRE-------EPNALCE--VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADA 423 (895)
T ss_pred -----hccc-------ccccccc--CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHH
Confidence 0000 0000000 01112223222 112223334444444444444444444 22344566666667
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047873 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 399 (464)
+...|++.+|+.++..+.....--+...|-.+..+|...|.++.|.+.|+.++... +.+...--+|...+.+.|+.++|
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHH
Confidence 77777777777777766665433345566666667777777777777777666641 12333444555566666777777
Q ss_pred HHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047873 400 NMLLDTML--------DLGVVPDDITYNILLEGHCKHGNPEDF 434 (464)
Q Consensus 400 ~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~~a 434 (464)
.+.+..+. ..+..|+..........+...|+.++.
T Consensus 503 lEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 503 LETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 76666643 123344455555556666666766663
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.7e-16 Score=130.31 Aligned_cols=354 Identities=12% Similarity=0.083 Sum_probs=243.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC------------
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP------------ 127 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------ 127 (464)
.+++.+...+.+.|++++|+..|+.+.+.. |+-.+-..++-++..-|+.++..+.|.+++..-..+
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 667778888999999999999999988873 565554455556667788899999999987643222
Q ss_pred ChhhHHHHH-----HHHHhcCC--hhhHHHHHHHHhhCCCCCCccc---------------------HHHHHHHHHhcCC
Q 047873 128 SVYVFNVLM-----HKLCKEGK--IKDAQMVFDEFGKRGLHATAVS---------------------FNTLINGHCKAKN 179 (464)
Q Consensus 128 ~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~~~ 179 (464)
+....+..+ ...-+.+. .++++-.--++...-+.|+... --.-...+.++|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 222222222 11222211 1112111112211111222110 0112346778999
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHH------------------------------------HHHHHhcCChhHHHHHHH
Q 047873 180 LDEGFRLKSVMEGSGMRPDVYTYSAL------------------------------------INGLCKENRLDDAELLLH 223 (464)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------~~~~~~~~~~~~a~~~~~ 223 (464)
++.|.+++..+.+..-+.....-+.| .+.....|++++|.+.|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 99998888877654222111111111 111224588999999999
Q ss_pred HHHHCCCCCCHHHHHHHHH---HHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHH
Q 047873 224 EMCERGLTPNDVIFTTLID---GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKE 300 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (464)
+.... |..+-..|.. .+...|+ +++|+..|-++... +..+..+...+...|-...++.+|++++.+
T Consensus 515 eal~n----dasc~ealfniglt~e~~~~------ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 515 EALNN----DASCTEALFNIGLTAEALGN------LDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHcC----chHHHHHHHHhcccHHHhcC------HHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 98876 4333333322 2344444 57999999887553 234677778888999999999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 047873 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV 380 (464)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 380 (464)
.... ++-|+.+++.|...|-+.|+-.+|.+.+-.-.+- ++-+..+...|...|....-+++++..|++..- ++|+.
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 7765 4558999999999999999999999887665443 466888999999999999999999999998876 67999
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047873 381 ETYNALMNGL-CKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431 (464)
Q Consensus 381 ~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 431 (464)
.-|..++..| .+.|+++.|.++++...+. ++.|...+..|++.+...|--
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 9999888655 5689999999999998764 677999999999999887743
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-14 Score=121.52 Aligned_cols=306 Identities=16% Similarity=0.237 Sum_probs=211.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC--hhhH-HHHHHHHHhc-------------
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL--PTVT-LGFYLEILDY------------- 123 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a-~~~~~~~~~~------------- 123 (464)
.+-+.|+.+ ...|...++--+|+.|.+.+++.+...-..+++.-+-.+. +.-+ .+.|-.|...
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 455666654 4578999999999999999988887776666554332221 1111 1122222111
Q ss_pred ------CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 047873 124 ------GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP 197 (464)
Q Consensus 124 ------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 197 (464)
-.+.+..++..+|..+++--..+.|.+++.+......+.+..+||.+|.+-.-. ...+++.+|....+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC
Confidence 122367889999999999999999999999998877788899999998875533 3378999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC----
Q 047873 198 DVYTYSALINGLCKENRLDD----AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN---- 269 (464)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---- 269 (464)
|..|+|+++.+..+.|+++. |.+++.+|.+.|+.|+..+|..+|..+++.++.. ..+..++.++...
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~-----k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ-----KVASSWINDIQNSLTGK 346 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch-----hhhHHHHHHHHHhhccC
Confidence 99999999999999998764 5678888999999999999999999999888763 3455555555432
Q ss_pred CCC---C-CHHhHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 270 GLN---P-DKITYTILLDGFCKEGDLESALDIRKEMIKRG----IELD---NVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 270 ~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
..+ | +...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122 2 34456667777778888777777765443321 1122 22345555666666666777777777665
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047873 339 VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375 (464)
Q Consensus 339 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 375 (464)
.-.-|+..+...++++..-.|.++-..++|..++..|
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 5555666666666666666666666666665555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-13 Score=126.15 Aligned_cols=431 Identities=15% Similarity=0.109 Sum_probs=304.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|....+|..|+.+|-++|+.++++..+-.+. ...|.+ ..|..+.....+.|++++|+-+|
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-------------------HL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-------------------HLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHH-------------------hcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 5678899999999999999999998776654 455555 99999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH----HHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN----VLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+..+.. |++-..+..-...|-+.|+..+|.+-|.++....++.|..-.. ..++.+...++-+.|.+.++.....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999986 5566666667778899999999999999999876543433333 3456677788889999998887663
Q ss_pred -CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC---------------------------CCCCHHHHHHHHHHHH
Q 047873 159 -GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG---------------------------MRPDVYTYSALINGLC 210 (464)
Q Consensus 159 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~ 210 (464)
+-..+...++.++..+.+...++.+......+.... +.++... ..++-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 223456778999999999999999998887776521 1122222 12333445
Q ss_pred hcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhC
Q 047873 211 KENRLDDAELLLHEMCERGLT--PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288 (464)
Q Consensus 211 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 288 (464)
+.+..+....+...+.+..+. -+...|.-+..++...|++ ..|+.+|..+.....--+...|-.+.++|...
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~------~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY------KEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH------HHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 555555555666666666533 3566788888999998887 59999999998875555677899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH--------CCCCCCHhhHHHHHHHHHhcCC
Q 047873 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK--------VGLKPDDATYTMVIDCFCKNGD 360 (464)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~~~ 360 (464)
|.++.|.+.++.++...+. +...-..|...+.+.|+.++|.+.+..+.. .+..|+..........+.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999987543 556667778888999999999999988542 2234445555555666666776
Q ss_pred hHHHHHHHHHHHhCC-----C---------------------------------------------Cc-----------C
Q 047873 361 TKTGFRLLKEMRSDG-----H---------------------------------------------LP-----------A 379 (464)
Q Consensus 361 ~~~a~~~~~~~~~~~-----~---------------------------------------------~~-----------~ 379 (464)
.++-..+-..|+... + .+ +
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 655444333222100 0 00 0
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHhc----CC--C
Q 047873 380 V----ETYNALMNGLCKHGQLKNANMLLDTMLDLGV-VPDDI----TYNILLEGHCKHGNPEDFDKLQSEK----GL--V 444 (464)
Q Consensus 380 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~----~~--~ 444 (464)
. ..+..++.++.+.+++++|..+...+.+... .-+.. .=...+.++...+++..|...++.+ +. .
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~ 701 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLD 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhh
Confidence 0 1135567778899999999999988875321 11222 2344556677889999998888762 22 2
Q ss_pred C-chhHHHHhhccchhhhh
Q 047873 445 S-DYACYTSLVSKSSKYRQ 462 (464)
Q Consensus 445 p-~~~~~~~ll~~~~~~~~ 462 (464)
| ....|+..++..++++|
T Consensus 702 ~~q~~l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQ 720 (895)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 2 24555555555555544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-12 Score=114.25 Aligned_cols=416 Identities=11% Similarity=0.041 Sum_probs=222.1
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH---hcCCCChHHHH----------------HHHHHh---cCCCCCh-
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS---KKGMGSSASLF----------------ASILET---RGTHLPG- 59 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~----------------~~~~~~---~~~~~~~- 59 (464)
+|.+...|-+-..+=-++|+.+...++..+.+. .+|..-.+.-. ..++.+ .|.+..+
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 455666666665555566666666666555432 22221111111 111111 1333222
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 60 -LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 60 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
.+|..-...|.+.+-++-|+.+|....+.. +.+...|......--..|..+....+++++...-+. ....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHH
Confidence 555555556666666666666666555543 334445555555444556666666666666554332 44455555555
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 218 (464)
+-..|+...|..++...-+.. +.+...|-..+.....+..++.|..+|.+.... .|+...|.--++.-.-.++.++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 555566666666666555543 224555555556666666666666666655543 34555554444444455566666
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHH
Q 047873 219 ELLLHEMCERGLTPN-DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 297 (464)
++++++..+. -|+ ...|..+...+.+.++. +.|...|..-.+. .+-....|..+...--+.|++-+|..+
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i------e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENI------EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH------HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 6666655554 222 23344444445444433 3555554443332 122334455555555555566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047873 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL 377 (464)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 377 (464)
++...-+++. +...|...+.+-.+.|+.+.|..++.++++.- +.+...|..-|....+.++-..+...+++. .
T Consensus 742 ldrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALkkc-----e 814 (913)
T KOG0495|consen 742 LDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----E 814 (913)
T ss_pred HHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHHhc-----c
Confidence 6666555544 55566666666666666666666666655542 333444555555544444433333322222 2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
-|+...-.+...|....+++.|.+.|.+.++.+ +.+-.+|.-+...+.++|.-++-.+++.+
T Consensus 815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 355556666777777777888888888777643 22456676777777777776666666665
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-14 Score=127.36 Aligned_cols=294 Identities=12% Similarity=0.018 Sum_probs=177.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
...|+++.|.+.+.+..+.. +-+...+..........|+++.|.+.+.+..+..+.+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45677777777777766553 21233344455666677777777777777766443322233344566777777777777
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH-HHHHHH---HhcCChhHHHHHHHHH
Q 047873 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS-ALINGL---CKENRLDDAELLLHEM 225 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~ 225 (464)
..++.+.+.. +.+..+...+...+...|+++.|.+.+..+.+.+.. +...+. .-..++ ...+..++..+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777664 335566777777777777777777777777776533 222221 111111 2222223333344444
Q ss_pred HHCCC---CCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhCCChHHHHHHHHHH
Q 047873 226 CERGL---TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY-TILLDGFCKEGDLESALDIRKEM 301 (464)
Q Consensus 226 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~ 301 (464)
.+... +.+...+..+...+...|+. ++|.+.+++..+..+......+ ..........++.+.+.+.++..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~------~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDH------DSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCCh------HHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 43311 12566677777777777765 4777777777775332221111 11111223346677777777777
Q ss_pred HHcCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 302 IKRGIELDN--VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 302 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
.+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 326 lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 766432 44 556677777788888888888888533333357777777888888888888888888877644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-13 Score=125.56 Aligned_cols=292 Identities=10% Similarity=-0.006 Sum_probs=214.9
Q ss_pred HcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcc--cHHHHHHHHHhcCChhH
Q 047873 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV--SFNTLINGHCKAKNLDE 182 (464)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 182 (464)
...|+++.|.+.+.+..+..+. ....+-....++...|+++.|.+.+.+..+. .|+.. ..-.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 4679999999999988876533 2344455677788899999999999998765 34543 33445888889999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCcccccCHHH
Q 047873 183 GFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT-TLIDGH---CKNGRIDMAGDMKE 258 (464)
Q Consensus 183 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~~~~~~~ 258 (464)
|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+.. +.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~------~~ 243 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMA------DE 243 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH------hc
Confidence 999999999875 446778889999999999999999999999998654 333331 111111 222222 12
Q ss_pred HHHHHHHHHhCCC---CCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCChHHHHHHHH
Q 047873 259 ARKIVDEMCTNGL---NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA-FTALISGFCRGGKVVEAERMLR 334 (464)
Q Consensus 259 a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 334 (464)
....+..+....+ +.+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 3334444433322 23778888899999999999999999999999754422111 1122222344578889999998
Q ss_pred HHHHCCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 335 EMLKVGLKPDD--ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 335 ~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
...+.. +-|. .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 324 ~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888763 3344 567789999999999999999999644443568998899999999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-13 Score=124.62 Aligned_cols=283 Identities=10% Similarity=0.035 Sum_probs=163.8
Q ss_pred CCChhhHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHH--HHHHHHHhcCChhHH
Q 047873 107 TNLPTVTLGFYLEILDYGYSPSVYV-FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN--TLINGHCKAKNLDEG 183 (464)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 183 (464)
.|+++.|.+......+... ++.. +.....+....|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 4555555555444333221 1222 222233335555666666666555543 33332222 223455555666666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCcccccCH
Q 047873 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPND-------VIFTTLIDGHCKNGRIDMAGDM 256 (464)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~ 256 (464)
...++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+ .
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~------~ 245 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG------S 245 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC------H
Confidence 66666655543 224445555556666666666666666666555433211 122222222222211 1
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 047873 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336 (464)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 336 (464)
+...++++.+... .+.+......+...+...|+.++|..++++..+. .++.... ++.+....++.+++.+..+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 3444444444332 2345667777788888888888888888888774 3344222 233334557888888888887
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 337 LKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 337 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 321 lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7664 445666778888888888888888888888874 57888878888888888888888888887654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-17 Score=139.81 Aligned_cols=262 Identities=16% Similarity=0.109 Sum_probs=100.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHY-FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
.+...+.+.|++++|++++....... .+.+...|..+.......++++.|...|+++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55778888999999999996554443 2334555666667777788999999999998877655 66677777776 688
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELL 221 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 221 (464)
+++++|.++++..-++ .++...+...+..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|+++
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999998888776555 3466677778888888899999988888876532 345677788888888889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHH
Q 047873 222 LHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301 (464)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (464)
+++..+..+. +......++..+...|+. +++..+++...... +.+...+..+..++...|+.++|...+++.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~------~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDY------DEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHH------HHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCCh------HHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 9988887422 566777788888877765 46667776665542 334556777888888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
.+..+. |+.....+..++.+.|+.++|..+.+++.+
T Consensus 241 ~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHSTT--HHHHHHHHHHHT-----------------
T ss_pred cccccc-cccccccccccccccccccccccccccccc
Confidence 876543 777888888888888888888888777654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-12 Score=109.58 Aligned_cols=382 Identities=11% Similarity=0.044 Sum_probs=267.9
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh--
Q 047873 54 GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV-- 131 (464)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 131 (464)
+...|...+-.....+.+.|..+.|+..|-.....- |..=.+|..|.... .-+++.......++ .|...
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li-------t~~e~~~~l~~~l~-~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI-------TDIEILSILVVGLP-SDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh-------chHHHHHHHHhcCc-ccchHHH
Confidence 445555666666667788888999999988876653 32333444444332 12222222222222 12111
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCHHHHHHHHHHH
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM--RPDVYTYSALINGL 209 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 209 (464)
--.+..++.+..+.+++.+-.+.....|++-+...-+....+.....+++.|+.+|+++.+... -.|..+|..++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1234556777778888888888888888765655556666667788899999999999987631 12566777666443
Q ss_pred HhcCChhHHHHHHHHHH-H-CCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 047873 210 CKENRLDDAELLLHEMC-E-RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287 (464)
Q Consensus 210 ~~~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (464)
-.... +..+.+-. + ... -+.|...+.+-|.-.++. ++|..+|++..+.++. ....|+.+..-|..
T Consensus 310 ~~~sk----Ls~LA~~v~~idKy--R~ETCCiIaNYYSlr~eH------EKAv~YFkRALkLNp~-~~~aWTLmGHEyvE 376 (559)
T KOG1155|consen 310 NDKSK----LSYLAQNVSNIDKY--RPETCCIIANYYSLRSEH------EKAVMYFKRALKLNPK-YLSAWTLMGHEYVE 376 (559)
T ss_pred hhhHH----HHHHHHHHHHhccC--CccceeeehhHHHHHHhH------HHHHHHHHHHHhcCcc-hhHHHHHhhHHHHH
Confidence 22222 22222111 1 112 234445555555555444 7999999999986532 46789999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 047873 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367 (464)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 367 (464)
.++...|++.++..++-++. |-..|-.+.++|.-.+.+.=|+-.|+++.+.. +.|...|..|..+|.+.++.++|++.
T Consensus 377 mKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 377 MKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred hcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999998765 88999999999999999999999999998875 56889999999999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHh-
Q 047873 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD----LGVV-P-DDITYNILLEGHCKHGNPEDFDKLQSE- 440 (464)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~- 440 (464)
|.+....+-. +...+..+...|-+.++.++|...+++.++ .|.. | ......-|..-+.+.+++++|..+...
T Consensus 455 ykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 455 YKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9999987533 668899999999999999999999988764 2322 2 222333355667799999999887665
Q ss_pred cCCCCchhHHHHhhccchhh
Q 047873 441 KGLVSDYACYTSLVSKSSKY 460 (464)
Q Consensus 441 ~~~~p~~~~~~~ll~~~~~~ 460 (464)
....+..+--.+|++.+.+.
T Consensus 534 ~~~~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 534 LKGETECEEAKALLREIRKI 553 (559)
T ss_pred hcCCchHHHHHHHHHHHHHh
Confidence 33388888888888777654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-12 Score=109.80 Aligned_cols=379 Identities=11% Similarity=0.014 Sum_probs=263.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.+..-+...+..+-+.|....|++.|...+. .-|-. .+|..|..... +.+ ...
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~-------------------~~P~~W~AWleL~~lit---~~e----~~~ 215 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVN-------------------RYPWFWSAWLELSELIT---DIE----ILS 215 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHh-------------------cCCcchHHHHHHHHhhc---hHH----HHH
Confidence 4555667777888889999999999888873 23333 66666555442 222 222
Q ss_pred HHHhCCCCCChhcH--HHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC-
Q 047873 84 LLRKHYFRIPARGC--RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL- 160 (464)
Q Consensus 84 ~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 160 (464)
.+.. +.+.+...+ ..+..++....+.+++.+-.+.....|.+-+...-+....+.-...++++|+.+|+++.+.+.
T Consensus 216 ~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY 294 (559)
T KOG1155|consen 216 ILVV-GLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY 294 (559)
T ss_pred HHHh-cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 2222 222222222 223455666678888888888888888876677767777777888999999999999988731
Q ss_pred -CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047873 161 -HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239 (464)
Q Consensus 161 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 239 (464)
--|..+|+.++-. ++.+-.-+.-......-. +--+.|+..+.+-|.-.++.++|...|+...+.+.. ....|+.
T Consensus 295 Rl~dmdlySN~LYv--~~~~skLs~LA~~v~~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTL 369 (559)
T KOG1155|consen 295 RLDDMDLYSNVLYV--KNDKSKLSYLAQNVSNID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTL 369 (559)
T ss_pred cchhHHHHhHHHHH--HhhhHHHHHHHHHHHHhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHH
Confidence 0145566655533 333222111111111111 234557888889999999999999999999988643 5677888
Q ss_pred HHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047873 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319 (464)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (464)
+..-|....+. ..|+.-+++.++-. +.|...|-.+.++|.-.+.+.=|+-.|++...-.+. |...|.+|..+
T Consensus 370 mGHEyvEmKNt------~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~C 441 (559)
T KOG1155|consen 370 MGHEYVEMKNT------HAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGEC 441 (559)
T ss_pred hhHHHHHhccc------HHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHH
Confidence 88889888776 59999999998864 347888999999999999999999999999887544 88999999999
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-c-CHHHHHHHHHHHHhc
Q 047873 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GHL-P-AVETYNALMNGLCKH 393 (464)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~ 393 (464)
|.+.++.++|...|++....| ..+...+..|...|-+.++.++|...|.+.++. |.. | ....-.-|..-+.+.
T Consensus 442 Y~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~ 520 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKM 520 (559)
T ss_pred HHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhh
Confidence 999999999999999999876 346688999999999999999999999887763 222 2 122222355667788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047873 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426 (464)
Q Consensus 394 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (464)
+++++|..+....... .+...--..|++-+.
T Consensus 521 ~~~~~As~Ya~~~~~~--~~e~eeak~LlReir 551 (559)
T KOG1155|consen 521 KDFDEASYYATLVLKG--ETECEEAKALLREIR 551 (559)
T ss_pred cchHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Confidence 8888888776665532 334444444444433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-13 Score=113.55 Aligned_cols=394 Identities=11% Similarity=-0.000 Sum_probs=229.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
..+...++-|.++|++++|++.|..++ ...|+ ..-|.....+|...|+|++.++--.+.+
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI-------------------~l~p~epiFYsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAI-------------------ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHH-------------------hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 345677888999999999999999999 67888 4888899999999999999999888887
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhh-CC--CCC
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD-YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK-RG--LHA 162 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~ 162 (464)
+.+ |--..++..-..++-..|++++|+.=..-..- .|.. +..+--.+=+.+-+ .|.....+-.+ .+ +-|
T Consensus 177 El~-P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lP 249 (606)
T KOG0547|consen 177 ELN-PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLP 249 (606)
T ss_pred hcC-cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCC
Confidence 775 22245566666777778888877542222111 1111 21111111111111 11111111111 11 112
Q ss_pred CcccHHHHHHHHHh-------------------------cC---ChhHHHHHHHHHhhC---CCCCC---------HHHH
Q 047873 163 TAVSFNTLINGHCK-------------------------AK---NLDEGFRLKSVMEGS---GMRPD---------VYTY 202 (464)
Q Consensus 163 ~~~~~~~l~~~~~~-------------------------~~---~~~~a~~~~~~~~~~---~~~~~---------~~~~ 202 (464)
+.....+....+.. .+ .+..|.+.+.+-... ....+ ..+.
T Consensus 250 S~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 250 SATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred cHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence 22211111111110 00 122222222211100 00111 1222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 047873 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282 (464)
Q Consensus 203 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (464)
......+.-.|+.-.|..-|+..++....++ ..|-.+..+|.+..+. ++..+.|......++. ++.+|..=.
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~------~~~~~~F~~A~~ldp~-n~dvYyHRg 401 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQS------EKMWKDFNKAEDLDPE-NPDVYYHRG 401 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhcc------HHHHHHHHHHHhcCCC-CCchhHhHH
Confidence 2222334456777778888888777643322 2265666667766654 5777777777765432 344555555
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 047873 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTK 362 (464)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 362 (464)
....-.++++.|..-|++....++. +...|..+.-+..+.++++++...|++..+. ++..+..|+.....+..+++++
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHH
Confidence 5666667788888888877776543 4555666666666777888888888887765 3555677888888888888888
Q ss_pred HHHHHHHHHHhCCCC-------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047873 363 TGFRLLKEMRSDGHL-------PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-DDITYNILLEGHCKHGNPEDF 434 (464)
Q Consensus 363 ~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 434 (464)
.|.+.|+..++.... +.+...-.++..-. .+++..|.+++++..+. .| ....+..|...-.+.|+.++|
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHH
Confidence 888888877764211 11112222222222 37778888888887764 33 455677777777788888888
Q ss_pred HHHHHh
Q 047873 435 DKLQSE 440 (464)
Q Consensus 435 ~~~~~~ 440 (464)
++++++
T Consensus 557 ielFEk 562 (606)
T KOG0547|consen 557 IELFEK 562 (606)
T ss_pred HHHHHH
Confidence 888776
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.1e-12 Score=112.29 Aligned_cols=362 Identities=9% Similarity=0.008 Sum_probs=297.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
.+|..-.+.|.+++-++-|..+|..++ +.-|.. .+|...+..--..|..+.-..+|++..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~al-------------------qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHAL-------------------QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHH-------------------hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 356666677777777777777777777 344444 999999998889999999999999998
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCccc
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (464)
..- |-....|.......-..|+...|..++..+.+..+. +...|...+....+..+++.|..+|.+.... .|+..+
T Consensus 578 ~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv 653 (913)
T KOG0495|consen 578 EQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERV 653 (913)
T ss_pred HhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchh
Confidence 874 334555666677778889999999999999998766 8889999999999999999999999998775 678888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047873 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD-VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245 (464)
Q Consensus 167 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (464)
|-.-+....-.++.++|.+++++..+. -|+ ...|..+.+.+-..++++.|.+.|..-.+. ++-.+..|-.+...-.
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEE 730 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHH
Confidence 888888878889999999999998876 344 567888889999999999999999876654 3446677777777666
Q ss_pred hcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 047873 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325 (464)
Q Consensus 246 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (464)
+.|.. ..|..++++....++ .+...|...|++-.+.|+.+.|..+..+.++..+ .+...|..-|....+.++
T Consensus 731 k~~~~------~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 731 KDGQL------VRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECP-SSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred Hhcch------hhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccchhHHHHHHhccCccc
Confidence 66654 699999999988754 4778899999999999999999999999998743 367788888888888887
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047873 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT 405 (464)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 405 (464)
--...+.+++- ..|+++...+...|.....+++|.+.|.+..+.+. ....+|.-+...+.++|.-+.-.+++.+
T Consensus 803 kTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 803 KTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred chHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666655543 46888999999999999999999999999999742 3567888899999999999999999999
Q ss_pred HHhC
Q 047873 406 MLDL 409 (464)
Q Consensus 406 ~~~~ 409 (464)
....
T Consensus 877 c~~~ 880 (913)
T KOG0495|consen 877 CETA 880 (913)
T ss_pred Hhcc
Confidence 8864
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-13 Score=122.73 Aligned_cols=287 Identities=10% Similarity=0.038 Sum_probs=202.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (464)
.|+++.|.+.+....... +.+...+........+.|+++.|.+.+.++.+..+.+...........+...|+++.|.+.
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 688888888887765542 1122223333445578888888888888887754332222222346678888888888888
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHH
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV-------YTYSALINGLCKENRLDDAELLLHE 224 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 224 (464)
++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 88887775 446677788888888888888888888888876543222 2334445544455556666777776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047873 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (464)
+.+. .+.++.....+...+...|+. ++|.+++++..+. +|+.... ++.+....++.+++.+..+...+.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~------~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDH------DTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCH------HHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 6543 234677777788888887776 5888888888774 3444222 233334558888888888888877
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
.+. |+..+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++....
T Consensus 324 ~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 HGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 554 6777888888889999999999999988875 588888888888999999999999888887653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=135.99 Aligned_cols=258 Identities=16% Similarity=0.137 Sum_probs=61.4
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (464)
...+...|++++|+++++...... .+.+...|..+...+...++++.|...++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555553322221 1122333333334444445555555555555443311 33334444443 34455
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhCCChHH
Q 047873 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLES 293 (464)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 293 (464)
+++|.+++....+. .+++..+...+..+...+++ +++..+++.+.... .+.+...|..+...+.+.|+.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDY------DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------H-HHHTT-H------HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHH------HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55555544443332 12333333444444444333 34444444433221 12334444445555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 294 ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
|+..+++.++..+. +......++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|+..|++..+
T Consensus 165 A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 165 ALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 55555555554322 34444455555555555555555554444432 22333444455555555555555555555544
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047873 374 DGHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406 (464)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 406 (464)
. .+.|+.....+..++...|+.++|.++.+++
T Consensus 243 ~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 243 L-NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp H-STT-HHHHHHHHHHHT---------------
T ss_pred c-ccccccccccccccccccccccccccccccc
Confidence 3 1224444445555555555555555554443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-11 Score=105.79 Aligned_cols=382 Identities=9% Similarity=0.031 Sum_probs=225.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 56 HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
..+...|...+.+=.++..+..|..+|++....-+. -...|...+..=-..|+..-|.++|++-.+ ..|+...|.+.
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sf 180 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSF 180 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 344467777777777777777777777776665322 223344444444456777777777777665 34677777777
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcC
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS-GM-RPDVYTYSALINGLCKEN 213 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~ 213 (464)
+..-.+.+.++.|..+|+...-. .|+..+|......-.+.|+...+.++|+...+. |- ..+...+.+....=.++.
T Consensus 181 I~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQK 258 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776554 567777777777767777777777777766543 10 111222233332223344
Q ss_pred ChhHHHHHHHHHHHCCC-------------------------------------------CCCHHHHHHHHHHHHhcCCc
Q 047873 214 RLDDAELLLHEMCERGL-------------------------------------------TPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 214 ~~~~a~~~~~~~~~~~~-------------------------------------------~~~~~~~~~l~~~~~~~~~~ 250 (464)
.++.|.-+|.-.++.-+ +.|-.+|--.+..-...|+
T Consensus 259 E~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~- 337 (677)
T KOG1915|consen 259 EYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGD- 337 (677)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCC-
Confidence 45555555554443310 1123333333333333333
Q ss_pred ccccCHHHHHHHHHHHHhCCCCCCH--HhHHHHH-----HH---HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH---
Q 047873 251 DMAGDMKEARKIVDEMCTNGLNPDK--ITYTILL-----DG---FCKEGDLESALDIRKEMIKRGIELDNVAFTALI--- 317 (464)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~-----~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 317 (464)
.+...++|++.+.. ++|-. ..|...| -+ -....+.+.+.++++..++. ++....||..+-
T Consensus 338 -----~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmy 410 (677)
T KOG1915|consen 338 -----KDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMY 410 (677)
T ss_pred -----HHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHH
Confidence 35667777776664 33311 1111111 11 12456677777777777663 333444444433
Q ss_pred -HHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 047873 318 -SGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQL 396 (464)
Q Consensus 318 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (464)
....++.++..|.+++..+.- ..|-..+|...+..-.+.++++.+..+|++.++.+. -+..+|......=...|+.
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDT 487 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhH
Confidence 333456777777777776553 457777777777777788888888888888887632 2566777777777778888
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhHHHHh
Q 047873 397 KNANMLLDTMLDLG-VVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYACYTSL 453 (464)
Q Consensus 397 ~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~~~~l 453 (464)
+.|..+|+-+++.. +.-....|...|.--...|.++.|..+++. +...+-..+|-+.
T Consensus 488 dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 488 DRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence 88888888877532 222344566666666677888888888776 4444544455443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-12 Score=107.07 Aligned_cols=284 Identities=15% Similarity=0.166 Sum_probs=123.9
Q ss_pred CChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhcCChh
Q 047873 73 GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV------YVFNVLMHKLCKEGKIK 146 (464)
Q Consensus 73 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~ 146 (464)
++.++|++.|-+|.+.+ +.+.++..+++..+.+.|..++|+.+.+.+.+. ||. .+...|.+-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 44555555555555443 223444445555555555555555555554432 121 12223334444455555
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHH
Q 047873 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV----YTYSALINGLCKENRLDDAELLL 222 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~ 222 (464)
.|+.+|..+...+ ..-......|+..|-...+|++|++.-+++.+.+-.+.. ..|..+...+....+++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d------ 197 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD------ 197 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH------
Confidence 5555555544432 112333444445555555555555554444443322211 12233333333344444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 047873 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMI 302 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (464)
.|...+++..+.+.. .+..-..+.+.....|++..|.+.++.+.
T Consensus 198 -----------------------------------~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 198 -----------------------------------RARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred -----------------------------------HHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 445555554443211 22222334444555555555555555555
Q ss_pred HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHH
Q 047873 303 KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382 (464)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 382 (464)
+.++..-+.+...|..+|.+.|+.++...++.++.+.. +....-..+...-......+.|...+.+-... .|+...
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~g 317 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRG 317 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHH
Confidence 55444334445555555555555555555555555442 22222222222222233333343333333322 255555
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHH
Q 047873 383 YNALMNGLCK---HGQLKNANMLLDTML 407 (464)
Q Consensus 383 ~~~l~~~~~~---~g~~~~a~~~~~~~~ 407 (464)
+..++..-.. .|+..+-..++++|+
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHH
Confidence 5555544332 233444444455554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-14 Score=124.64 Aligned_cols=281 Identities=12% Similarity=0.034 Sum_probs=181.1
Q ss_pred ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhhHHHH
Q 047873 74 FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY--SPSVYVFNVLMHKLCKEGKIKDAQMV 151 (464)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (464)
+..+|+..|+++.... .-+......++.+|...+++++|..+|+.+.+..+ ..+..+|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 5667777777744442 33334555667777777777777777777665431 12556666666544322 11111
Q ss_pred H-HHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047873 152 F-DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230 (464)
Q Consensus 152 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 230 (464)
+ +.+.... +..+.+|..+..+|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 1 2222221 3356777777777777777777777777777653 225677777777777777777788777777654
Q ss_pred CCCHHHHH---HHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047873 231 TPNDVIFT---TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307 (464)
Q Consensus 231 ~~~~~~~~---~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (464)
|+..|+ .+.-.|.+.+++ +.|+-.|+++.+.++. +.+....+...+-+.|+.++|+++++++...+.+
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~------e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKL------EFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred --CchhhHHHHhhhhheeccchh------hHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 444444 345566666665 5777777777765432 4556666677777778888888888877776655
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
|+..--..+..+...+++++|+..++++++.- +-+...+..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 556 -n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 556 -NPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred -CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55555555666667777888888888777652 334556777777788888888887777777665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-12 Score=107.30 Aligned_cols=287 Identities=15% Similarity=0.152 Sum_probs=208.8
Q ss_pred cCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCc------ccHHHHHHHHHhcCC
Q 047873 106 RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA------VSFNTLINGHCKAKN 179 (464)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~ 179 (464)
-++++++|+++|-+|.+..+. +..+..+|...|.+.|..+.|+++...+..+ ||. .....|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 457899999999999986544 6666778899999999999999999998765 332 223455666777888
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHH
Q 047873 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEA 259 (464)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a 259 (464)
++.|+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+.. .++.-|.
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q----~~~~eIA----------------- 180 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ----TYRVEIA----------------- 180 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc----cchhHHH-----------------
Confidence 888888888887654 224456677888888888888888888877776322 2222111
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
..|..+...+....+.+.|..++.+..+.+.+ ....-..+.......|+++.|.+.|+.+.+.
T Consensus 181 ----------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 181 ----------------QFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred ----------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 12344555556667889999999999988655 5566667788899999999999999999998
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047873 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYN 419 (464)
Q Consensus 340 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 419 (464)
+..--..+...|..+|.+.|+.++....+.++.+.. +....-..+........-.+.|...+.+-+.. +|+...+.
T Consensus 244 n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~ 319 (389)
T COG2956 244 NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFH 319 (389)
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHH
Confidence 644445678889999999999999999999999863 34444444555445555667777776665543 79999999
Q ss_pred HHHHHHHhc---CCHHHHHHHHH
Q 047873 420 ILLEGHCKH---GNPEDFDKLQS 439 (464)
Q Consensus 420 ~l~~~~~~~---g~~~~a~~~~~ 439 (464)
.++...... |...+-.-+++
T Consensus 320 rl~~~~l~daeeg~~k~sL~~lr 342 (389)
T COG2956 320 RLMDYHLADAEEGRAKESLDLLR 342 (389)
T ss_pred HHHHhhhccccccchhhhHHHHH
Confidence 999887633 33455444444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-11 Score=102.64 Aligned_cols=353 Identities=12% Similarity=0.069 Sum_probs=236.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..|...+.+=-..|+...|.++|++.... .|+..+|.+.+..=.+-+..+.|..+|++..- +.|++..|-.....-
T Consensus 142 qlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE 217 (677)
T KOG1915|consen 142 QLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFE 217 (677)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHH
Confidence 67777776667777888888888777665 57777787777777777777788888777664 336777777777777
Q ss_pred HhcCChhhHHHHHHHHhhC-CC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC------------------------
Q 047873 140 CKEGKIKDAQMVFDEFGKR-GL-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS------------------------ 193 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------ 193 (464)
.+.|++..|..+|+..... |- .-+...+.+....-.++..++.|.-+|+-.++.
T Consensus 218 ~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchh
Confidence 7777777777777665443 10 001122333332222333333333333222111
Q ss_pred C-------------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHH---HHhcCC
Q 047873 194 G-------------------MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN--DVIFTTLIDG---HCKNGR 249 (464)
Q Consensus 194 ~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~---~~~~~~ 249 (464)
| -+-|-.+|--.++.--..|+.+...++|+..... ++|- ...|...|-. |+--..
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeE 376 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEE 376 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 0 1234556666677777789999999999999875 3332 1122222211 111000
Q ss_pred cccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH----HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 047873 250 IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG----FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGK 325 (464)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (464)
.+ +.+++.+.++++..++. ++-...||..+--. -.+..++..|.+++...+.. -|..-+|...|..-.+.++
T Consensus 377 le-~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 377 LE-AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLRE 452 (677)
T ss_pred HH-hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhh
Confidence 11 34567899999998884 33345566554333 34678899999999887754 5677899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047873 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG-HLPAVETYNALMNGLCKHGQLKNANMLLD 404 (464)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 404 (464)
++.+..++++.++.+ +-+-.+|......-...|+.+.|..+|.-+++.. .......|.+.|..=...|.++.|..+++
T Consensus 453 fDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 999999999999986 4567788888888888999999999999999862 22234456777777778999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH
Q 047873 405 TMLDLGVVPDDITYNILLEG 424 (464)
Q Consensus 405 ~~~~~~~~p~~~~~~~l~~~ 424 (464)
++++. .+...+|-++..-
T Consensus 532 rlL~r--t~h~kvWisFA~f 549 (677)
T KOG1915|consen 532 RLLDR--TQHVKVWISFAKF 549 (677)
T ss_pred HHHHh--cccchHHHhHHHH
Confidence 99875 3444566655543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-12 Score=106.54 Aligned_cols=292 Identities=12% Similarity=0.052 Sum_probs=204.0
Q ss_pred CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 047873 107 TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL 186 (464)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 186 (464)
.|++.+|.....+..+.+.. ....|..-..+.-..|+.+.+-.++.+..+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57788887777776666544 44455566667777788888888877776653244555566666777777888888877
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCcccccCHHHH
Q 047873 187 KSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN-------DVIFTTLIDGHCKNGRIDMAGDMKEA 259 (464)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~a 259 (464)
++.+.+.+ +.++.......++|.+.|++.....++..+.+.+.-.+ ..+|..++.-....+.. +.-
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~------~gL 248 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS------EGL 248 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc------hHH
Confidence 77777665 34566677777888888888888888888877765433 23466666665554433 233
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
...+++.... .+.++..-..++.-+.+.|+.++|.++..+..+++..|. .. ..-.+.+-++.+.-++..++..+.
T Consensus 249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHh
Confidence 3344443322 344566677777888888999999999988888876544 22 222456677777777777766654
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047873 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414 (464)
Q Consensus 340 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 414 (464)
. +.++..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+..+|.++.++....-..|+
T Consensus 324 h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 324 H-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred C-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 3 44567788888899999999999999987777 468888999999999999999999988888764333343
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-13 Score=121.47 Aligned_cols=284 Identities=11% Similarity=0.019 Sum_probs=153.8
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC--CCCCcccHHHHHHHHHhcCChhHHHHH
Q 047873 109 LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG--LHATAVSFNTLINGHCKAKNLDEGFRL 186 (464)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 186 (464)
+..+|+..|.++...-. -..++...+.++|.+.+++++|.++|+.+.+.. -..+..+|.+.+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 44566666666333222 244555666667777777777777777665541 01134445544433211 111111
Q ss_pred H-HHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHH
Q 047873 187 K-SVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265 (464)
Q Consensus 187 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~ 265 (464)
+ +.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+ +.|...|+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~------d~a~~~fr~ 480 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEF------DKAMKSFRK 480 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHH------HhHHHHHHh
Confidence 1 2222221 334566777777777777777777777766655211 445555555545444433 466666666
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH
Q 047873 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345 (464)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 345 (464)
.+....+ +...|--+...|.+.++++.|+-.|+.+.+.++. +......+...+.+.|+.++|+.+++++...+. -|+
T Consensus 481 Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~ 557 (638)
T KOG1126|consen 481 ALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNP 557 (638)
T ss_pred hhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCc
Confidence 6543111 2233444555666666666666666666665544 455555666666666666666666666665542 233
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
..--..+..+...+++++|+..++++.+. .+.+...+-.+...|.+.|+.+.|+.-|--+.+.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 33333445555566666666666666664 2223445555666666666666666666555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-12 Score=105.53 Aligned_cols=120 Identities=9% Similarity=0.013 Sum_probs=52.4
Q ss_pred CChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHH
Q 047873 73 GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVF 152 (464)
Q Consensus 73 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 152 (464)
|+|.+|.+...+-.+.+ +-+.-.|.....+.-..|+.+++-.++.++.+.-..++....-+..+.....|+.+.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44444444444433333 11222333333444444444444444444444322233333344444444444444444444
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047873 153 DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194 (464)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 194 (464)
+++.+.+ +.+..+.....++|.+.|++.....++..+.+.+
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 4444432 2233444444444444444444444444444444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-11 Score=105.87 Aligned_cols=390 Identities=12% Similarity=0.024 Sum_probs=275.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-------------CCCC-----------hhcHHHHHHHHHcCCChhhH
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHY-------------FRIP-----------ARGCRCLIDRMMRTNLPTVT 113 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~-----------~~~~~~l~~~~~~~~~~~~a 113 (464)
+.......+..+.+..+|++|+.++....... ..++ ...+..-...|...+++++|
T Consensus 81 d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 81 DIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHH
Confidence 34566667778888999999999987221000 0001 11122223445566788888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcC------------------ChhhHHHHHHHHhhC----------------C
Q 047873 114 LGFYLEILDYGYSPSVYVFNVLMHKLCKEG------------------KIKDAQMVFDEFGKR----------------G 159 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~a~~~~~~~~~~----------------~ 159 (464)
...|.+.+...+. ....+..++....-.. +.+.-..+|+..... +
T Consensus 161 r~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~ 239 (611)
T KOG1173|consen 161 RDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIG 239 (611)
T ss_pred HHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhh
Confidence 8888887764433 3333333333222111 111112222211000 1
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047873 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTT 239 (464)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 239 (464)
...+.........-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- +..+.+|-.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 12233344445556677889999999999988764 5566667777778899999888888888888763 446888998
Q ss_pred HHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047873 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG 319 (464)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (464)
+.--|...+++ .+|.++|.+....+.. =...|-.....|.-.+..++|+..+...-+.-.. ...-+--+..-
T Consensus 318 Vg~YYl~i~k~------seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgme 389 (611)
T KOG1173|consen 318 VGCYYLMIGKY------SEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGME 389 (611)
T ss_pred HHHHHHHhcCc------HHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHH
Confidence 88888888877 5999999998764322 2457888999999999999999998887765211 11122233446
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCcCHHHHHHHHHHHHhc
Q 047873 320 FCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD------GHLPAVETYNALMNGLCKH 393 (464)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~ 393 (464)
|.+.++.+.|..+|.++.... +.|+..++-+.-.....+.+.+|..+|+..... .......+++.+..+|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 788999999999999998764 567788888888888899999999999988732 1112456789999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhHHHHhhccchhh
Q 047873 394 GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYACYTSLVSKSSKY 460 (464)
Q Consensus 394 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~~~~ll~~~~~~ 460 (464)
+++++|+..+++.+... +.+..++.++.-.|...|+++.|...+.+ +.+.|+..+...+++.+...
T Consensus 469 ~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999753 45899999999999999999999999988 89999999999999877654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-12 Score=121.33 Aligned_cols=264 Identities=13% Similarity=0.003 Sum_probs=174.5
Q ss_pred CCHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHh-------
Q 047873 5 LTLHAYSTMVHFLVA-----HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVD------- 71 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~------- 71 (464)
.+..+|...++.... .+.+++|+++|++++ ...|+. ..+..+..+|..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al-------------------~ldP~~a~a~~~La~~~~~~~~~g~~ 314 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV-------------------NMSPNSIAPYCALAECYLSMAQMGIF 314 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH-------------------hcCCccHHHHHHHHHHHHHHHHcCCc
Confidence 345555555554321 234578888888887 566766 677777665542
Q ss_pred --cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 72 --LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 72 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
.+++++|+..+++..+.+ |.+..++..+...+...|++++|...|+++++.++. +...+..+..++...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 315 DKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred ccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 244789999999998886 556778888888888899999999999999987755 6778888888899999999999
Q ss_pred HHHHHHhhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 150 MVFDEFGKRGLHAT-AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 150 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
..+++..+.+ |+ ...+..++..+...|++++|...++++.+...+-++..+..+..++...|++++|...+.++...
T Consensus 393 ~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 393 QTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 9999988773 33 23334445556678889999999888775532224455677778888899999999998887655
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047873 229 GLTPN-DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304 (464)
Q Consensus 229 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (464)
.|+ ....+.+...|...|+ .+...++.+.+.. -.+....+ .-..+.-.|+.+.+..+ +++.+.
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~--------~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNSE--------RALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred --cchhHHHHHHHHHHHhccHH--------HHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 233 3334445555566552 5555555554321 11111122 23334444555555544 555544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-12 Score=109.49 Aligned_cols=203 Identities=9% Similarity=-0.044 Sum_probs=162.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
+.....+..++..+...|++++|++.+++++. ..|+. ..+..+...+...|++++|++.|
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 88 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALE-------------------HDPDDYLAYLALALYYQQLGELEKAEDSF 88 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------hCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567888889999999999999999999873 33444 78888889999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (464)
++..... +.+...+..+...+...|++++|...++++.+.... .....+..+..++...|++++|.+.+++..... +
T Consensus 89 ~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 166 (234)
T TIGR02521 89 RRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-P 166 (234)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 9988875 445667788888889999999999999998874322 234566778888899999999999999887763 3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 167 QRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34567888888899999999999999988776 2445666777788888899999999888877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-10 Score=97.51 Aligned_cols=396 Identities=13% Similarity=0.101 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
....+=++.+..+|++++|.+...+++ ++.|++ .++..-+.++.+.++|++|+.+.+.-.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil-------------------~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~ 73 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKIL-------------------SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG 73 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHH-------------------hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc
Confidence 344555677889999999999999998 444555 888888888999999999997665422
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC-----
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP-SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL----- 160 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 160 (464)
... ....-+.--..+..+.+..++|+..++ |..+ +..+...-.+.+.+.+++++|..+|+.+.+.+.
T Consensus 74 ~~~--~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 74 ALL--VINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred hhh--hcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 110 011111112233447888899888887 2222 344666777788889999999999988854421
Q ss_pred ---------------------C-CCcccHHHHH---HHHHhcCChhHHHHHHHHHhhCC-------------CCCCHH-H
Q 047873 161 ---------------------H-ATAVSFNTLI---NGHCKAKNLDEGFRLKSVMEGSG-------------MRPDVY-T 201 (464)
Q Consensus 161 ---------------------~-~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~-~ 201 (464)
+ ....+|..+. ..++..|++.+|+++++...+.+ +.-... .
T Consensus 147 ~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 147 ERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 0 0122444443 34557899999999999883211 010111 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCcccccCHHHHHHHHHHHH----------
Q 047873 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVI----FTTLIDGHCKNGRIDMAGDMKEARKIVDEMC---------- 267 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~---------- 267 (464)
-..|..++...|+..+|.++|...++.... |... -|.++..-....-++ ..++..++...
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d-----~~~l~~k~~~~~~l~~~~l~~ 300 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFD-----GDLLKSKKSQVFKLAEFLLSK 300 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCc-----hHHHHHHHHHHHHhHHHHHHH
Confidence 234556677899999999999999887543 4322 222332222211121 01111111110
Q ss_pred ------------------------------hC--CCCCCHHhHHHHHHHHH--hCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047873 268 ------------------------------TN--GLNPDKITYTILLDGFC--KEGDLESALDIRKEMIKRGIELDNVAF 313 (464)
Q Consensus 268 ------------------------------~~--~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (464)
.. +..|. ..+..++..+. +...+..+..++...-+....-...+.
T Consensus 301 Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~ 379 (652)
T KOG2376|consen 301 LSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVL 379 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHH
Confidence 00 01111 22233333222 122355666666666655443334566
Q ss_pred HHHHHHHhccCChHHHHHHHH--------HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCcCHHH-
Q 047873 314 TALISGFCRGGKVVEAERMLR--------EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD--GHLPAVET- 382 (464)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~- 382 (464)
-.++......|+++.|..++. .+.+.+. .+.+...++..+.+.++-+.|..++.+.++. ...+....
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 667777888999999999998 4444433 3456667777778888877788888777664 11222233
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 383 ---YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 383 ---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
+..+...-.+.|+.++|..+++++.+.+ ++|..+...++.+|++. +++.|..+-+.
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 3333444457799999999999999853 66888999999999876 78888888765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-09 Score=94.77 Aligned_cols=331 Identities=11% Similarity=0.084 Sum_probs=204.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC
Q 047873 29 LLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN 108 (464)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 108 (464)
.++-+.........+.+|.+.+++..+.-...+|...+......|-++-++.++++..+.. +....-.+..+++.+
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhcc
Confidence 3344445556677788888888876666666888888888888888888888888877653 334666777888888
Q ss_pred ChhhHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcCCh---hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC
Q 047873 109 LPTVTLGFYLEILDYG------YSPSVYVFNVLMHKLCKEGKI---KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN 179 (464)
Q Consensus 109 ~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (464)
+.++|.+.+..++... .+.+-..|..+-...++.-+. -....+++.+..+-...=...|.+|.+.|++.|.
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 8888888888765321 122445555555554444322 2344455555443111113468899999999999
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----------------------ChhHHHHHHHHHHHCCC-------
Q 047873 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN----------------------RLDDAELLLHEMCERGL------- 230 (464)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~------- 230 (464)
+++|.++|++.++. ..+..-|..+.+.|+... +++-.+.-|+.+.....
T Consensus 264 ~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 264 FEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999887764 223334444444443221 12233344444433310
Q ss_pred ----CCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC------CHHhHHHHHHHHHhCCChHHHHHHHHH
Q 047873 231 ----TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP------DKITYTILLDGFCKEGDLESALDIRKE 300 (464)
Q Consensus 231 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (464)
+.+...|..-+..+ .++..+....+.+.+.. +.| -...|..+...|-.+|+++.|..+|++
T Consensus 342 LRQn~~nV~eW~kRV~l~--------e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY--------EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HhcCCccHHHHHhhhhhh--------cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11222222222222 23345666777777654 222 134578888999999999999999999
Q ss_pred HHHcCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC-----------------CHhhHHHHHHHHHhcCC
Q 047873 301 MIKRGIELD---NVAFTALISGFCRGGKVVEAERMLREMLKVGLKP-----------------DDATYTMVIDCFCKNGD 360 (464)
Q Consensus 301 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~ll~~~~~~~~ 360 (464)
..+...+-- ..+|..-...-.++.+++.|+.+++++....-+| +...|+..++..-..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 988754422 3566666777778889999999888876532111 12234444555555677
Q ss_pred hHHHHHHHHHHHhC
Q 047873 361 TKTGFRLLKEMRSD 374 (464)
Q Consensus 361 ~~~a~~~~~~~~~~ 374 (464)
++....+|+++++.
T Consensus 493 festk~vYdriidL 506 (835)
T KOG2047|consen 493 FESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777664
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-10 Score=101.09 Aligned_cols=287 Identities=11% Similarity=0.016 Sum_probs=216.6
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 047873 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205 (464)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (464)
..++.....-..-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-+-+=..+.+.- +..+.+|-.+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3456666666777888899999999999988774 5666777777778888898888887777777653 4467788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047873 206 INGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGF 285 (464)
Q Consensus 206 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (464)
.-.|...|+.++|.+.|.+....+.. =...|-.....|+-.+.. ++|+..+...-+. ++-...-+--+..-|
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~Eh------dQAmaaY~tAarl-~~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEH------DQAMAAYFTAARL-MPGCHLPSLYLGMEY 390 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchH------HHHHHHHHHHHHh-ccCCcchHHHHHHHH
Confidence 88888899999999999987765322 245677777777776665 4787777766553 111111123344456
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC----C--CCCCHhhHHHHHHHHHhcC
Q 047873 286 CKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV----G--LKPDDATYTMVIDCFCKNG 359 (464)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~ll~~~~~~~ 359 (464)
.+.++...|.+.|.+.....+. |+...+-+.-.....+.+.+|..+|+..+.. + ..--..+++.|..+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 7789999999999998887544 7888888888888888999999999887732 0 0113456888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047873 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426 (464)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (464)
.+++|+..+++.... .+.+..++.++.-.|...|+++.|.+.|.+.+- +.|+..+...++..+.
T Consensus 470 ~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 999999999999887 345888999999999999999999999999884 6788877777666544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.8e-10 Score=96.59 Aligned_cols=368 Identities=11% Similarity=0.016 Sum_probs=235.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
...+-|.++|++++|++.|....... |+ +.-|.....+|...|++++..+...+.++.++. -+.++..-..++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHhh
Confidence 45566888999999999999988874 55 555777888888999999999999999886644 466677777788888
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH-HHhhCC--CCCCHHHHHHHHHHHH---------
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKS-VMEGSG--MRPDVYTYSALINGLC--------- 210 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~--~~~~~~~~~~l~~~~~--------- 210 (464)
|++++|+.=..-..-.+--.+..+--.+=+.+-+. |..-.+ .+.+.+ +-|+..........+.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~-----a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ-----AMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH-----HHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 88888765333222211111111111111111111 111111 111111 1233322222221111
Q ss_pred --------------h--cC---ChhHHHHHHHHHHHC-CCC-----CCHHHHHHHHHHHHhcCCccc-ccCHHHHHHHHH
Q 047873 211 --------------K--EN---RLDDAELLLHEMCER-GLT-----PNDVIFTTLIDGHCKNGRIDM-AGDMKEARKIVD 264 (464)
Q Consensus 211 --------------~--~~---~~~~a~~~~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~-~~~~~~a~~~~~ 264 (464)
. .+ .+..|...+.+-... ... .|... ..+..+++..|-+.. .|+...+..-|+
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 0 01 122222222221110 000 11111 223333333332221 345568889999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC
Q 047873 265 EMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD 344 (464)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 344 (464)
..+.....++. .|-.+..+|....+..+.+..|+...+.++. ++.+|..-.+...-.+++++|..=|++..... +-+
T Consensus 351 ~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~ 427 (606)
T KOG0547|consen 351 AAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PEN 427 (606)
T ss_pred HHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhh
Confidence 99886544332 3777778899999999999999999998766 77888888888888899999999999999875 345
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------H
Q 047873 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD---------D 415 (464)
Q Consensus 345 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---------~ 415 (464)
...|..+..+..+.+.++++...|++.++. ++-.+..|+.....+...++++.|.+.|+...+. .|+ +
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~p 504 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAP 504 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchh
Confidence 667777888888899999999999999987 6667899999999999999999999999998863 232 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCch
Q 047873 416 ITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDY 447 (464)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~ 447 (464)
.+-..++..-++ +++.+|..++++ ..+.|..
T Consensus 505 lV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 505 LVHKALLVLQWK-EDINQAENLLRKAIELDPKC 536 (606)
T ss_pred hhhhhHhhhchh-hhHHHHHHHHHHHHccCchH
Confidence 222233333234 889999999998 7777763
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-09 Score=93.75 Aligned_cols=390 Identities=16% Similarity=0.144 Sum_probs=223.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
-+...+.+| ..+++...+++.+.++++. +....+.....-.+...|+-++|........+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~------------------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKF------------------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN 70 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhC------------------CccchhHHhccchhhcccchHHHHHHHHHHhcc
Confidence 344555544 5888999999888888532 222255555555566678888888877776665
Q ss_pred CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHH
Q 047873 89 YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFN 168 (464)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 168 (464)
+ .-+...|+.++-.+...+++++|+..|+.++..+.. |...+.-+...-+..|+++.....-..+.+.. +.....|.
T Consensus 71 d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~ 147 (700)
T KOG1156|consen 71 D-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWI 147 (700)
T ss_pred C-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHH
Confidence 5 335667777777777778888888888888877655 67777776666677777776666665555542 22345566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHH
Q 047873 169 TLINGHCKAKNLDEGFRLKSVMEGSG-MRPDVYTYSALI------NGLCKENRLDDAELLLHEMCERGLTPNDVIF-TTL 240 (464)
Q Consensus 169 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 240 (464)
.++.++.-.|++..|..+++...+.. ..|+...+.... ....+.|..++|.+.+..-... ..|...+ ..-
T Consensus 148 ~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~k 225 (700)
T KOG1156|consen 148 GFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETK 225 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhH
Confidence 66777777777777777777776543 234544443222 2233445555555444443322 1111111 122
Q ss_pred HHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHH-HHHHhCCChHH--------------------------
Q 047873 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL-DGFCKEGDLES-------------------------- 293 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~-------------------------- 293 (464)
...+.+.++. ++|..++..++.. .||...|.... .++.+..+..+
T Consensus 226 a~l~~kl~~l------EeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 226 ADLLMKLGQL------EEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV 297 (700)
T ss_pred HHHHHHHhhH------HhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH
Confidence 2233333333 4555555555543 23333332222 22211222222
Q ss_pred ---------HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH--------CC----------CCCCHh
Q 047873 294 ---------ALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK--------VG----------LKPDDA 346 (464)
Q Consensus 294 ---------a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~----------~~~~~~ 346 (464)
.-.++....+.|++ .++..+...|-.-...+ +++++.. .| -+|...
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttl 370 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTL 370 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHH
Confidence 22233334444443 23333333332222111 3332221 00 134433
Q ss_pred --hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047873 347 --TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLE 423 (464)
Q Consensus 347 --~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 423 (464)
++-.+...+-+.|+++.|...++..++. .|+ +..|..-.+.+...|++++|..++++.++.. .+|...=..-+.
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAK 447 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHH
Confidence 4455677788889999999999988885 344 4456666788888999999999999988653 345444435555
Q ss_pred HHHhcCCHHHHHHHHHh
Q 047873 424 GHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 424 ~~~~~g~~~~a~~~~~~ 440 (464)
-..++...++|.+++.+
T Consensus 448 YmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHccccHHHHHHHHH
Confidence 56688888888888765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-09 Score=92.33 Aligned_cols=437 Identities=11% Similarity=0.105 Sum_probs=271.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh---cCCC------------CChhhHHHHHHHHHh
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET---RGTH------------LPGLVLDALMIVYVD 71 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------~~~~~~~~l~~~~~~ 71 (464)
+..|-...+.+..+|+...-...|.+++..-..++...+..-.++- .+.+ .++..-+..+..+..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4556666666777777777777777666555555444444433322 1222 122224566777889
Q ss_pred cCChhHHHHHHHHHHhCC------CCCChhcHHHHHHHHHcCCCh---hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 72 LGFLDDAIQCFRLLRKHY------FRIPARGCRCLIDRMMRTNLP---TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
.+++++|.+.+..++..+ .+.+...|..+.....++.+. -....+++.++..-...=...|.+|...|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 999999999999886542 133455677776666654433 23344555555433323357899999999999
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC----------------------ChhHHHHHHHHHhhCCC-----
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK----------------------NLDEGFRLKSVMEGSGM----- 195 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~----- 195 (464)
|.++.|..+|++..+. ..+..-|..+.++|+.-. +++-....|+.+.....
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 9999999999998765 234445555555554321 12223334444433210
Q ss_pred ------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Q 047873 196 ------RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP------NDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263 (464)
Q Consensus 196 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~ 263 (464)
+.+...|..-. -...|+..+-...|.++.+. +.| -...|..+...|..+|+. +.|..+|
T Consensus 340 VlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l------~~aRvif 410 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL------DDARVIF 410 (835)
T ss_pred HHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH------HHHHHHH
Confidence 11222222222 22346677777788877664 222 244577888888888776 6999999
Q ss_pred HHHHhCCCCCC---HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHhcc
Q 047873 264 DEMCTNGLNPD---KITYTILLDGFCKEGDLESALDIRKEMIKRGIE----------L-------DNVAFTALISGFCRG 323 (464)
Q Consensus 264 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~ 323 (464)
++..+...+-- ..+|......-.+..+++.|+.+.+.....-.. | +...|...+......
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99987543211 345666666677888999999998876543111 1 334566677777778
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHh---cCCHHHH
Q 047873 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCK---HGQLKNA 399 (464)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~a 399 (464)
|-++....+++++....+. ++.+.......+-...-++++.++|++-+..=..|+ ...|+..+..+.+ ...++.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8999999999999887653 444444444455566778999999988877633344 4567877776654 2368999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHh--cCCCCc--hhHHHHhhcc
Q 047873 400 NMLLDTMLDLGVVPDDITYNILLEG--HCKHGNPEDFDKLQSE--KGLVSD--YACYTSLVSK 456 (464)
Q Consensus 400 ~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~--~~~~p~--~~~~~~ll~~ 456 (464)
..+|+++++ |.+|...-+-.++-+ --+.|....|..++++ .++.+. ...|+..|+.
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKK 631 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999998 666643322222222 2255777778888876 343332 4556665554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-11 Score=113.65 Aligned_cols=251 Identities=14% Similarity=0.074 Sum_probs=150.9
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh---------cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 047873 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK---------EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178 (464)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (464)
+..++|.+.|++.++..+. +...|..+..++.. .+++++|...+++..+.+ +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 4467777777777765543 45555555544332 234677777777777664 335566667777777778
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHH
Q 047873 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258 (464)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (464)
++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.++. +...+..++..+...|++ ++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~------ee 424 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGI------DD 424 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCH------HH
Confidence 8888888888777664 334556677777777888888888888887776433 222223333344455554 57
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
|...++++.....+-+...+..+..++...|+.++|...+.++...... +....+.+...|...| +.|...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 8888777765432223445666677777788888888888776654221 3344455555666666 366666666554
Q ss_pred CC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 339 VG-LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 339 ~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
.. -.+....+ +...+.-.|+.+.+..+ +++.+.
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 31 11222222 33334445666665555 666664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-09 Score=89.67 Aligned_cols=399 Identities=12% Similarity=0.064 Sum_probs=223.1
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 96 (464)
+.-+.+++.|+.+++.-+.- +.+..+.+-.-+...+...|++++|+.++..+...+ .++.+.
T Consensus 32 fls~rDytGAislLefk~~~-----------------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el 93 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNL-----------------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAEL 93 (557)
T ss_pred HHhcccchhHHHHHHHhhcc-----------------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCccc
Confidence 33456666666666654411 222222344446667889999999999999988865 567778
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (464)
+..+..++.-.|.+.+|..+-.+..+ ++---..++....+.|+-++-..+.+.+... ..---++......
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYM 163 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHH
Confidence 88888888889999999888766532 3444445556666777777766666665432 1223345555555
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCccc-
Q 047873 177 AKNLDEGFRLKSVMEGSGMRPDVYTYSA-LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK--NGRIDM- 252 (464)
Q Consensus 177 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~- 252 (464)
.-.+++|.++|.+.... .|+-...|. +.-+|.+..-++-+.+++.-..+. ++.++...+.......+ .|+..+
T Consensus 164 R~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHH
Confidence 56688999999888765 345445544 344666777777788887777665 22233333322222211 121110
Q ss_pred --------------------------ccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 047873 253 --------------------------AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI 306 (464)
Q Consensus 253 --------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (464)
..+-+.|++++-.+.+. -| ..-..++-.|.+.+++.+|..+..++...
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt-- 314 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT-- 314 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--
Confidence 00112222222222221 11 12233555678889999998887765432
Q ss_pred CCCHHHHHHHHHHHhccC-------ChHHHHHHHHHHHHCCCC-----------------------------------CC
Q 047873 307 ELDNVAFTALISGFCRGG-------KVVEAERMLREMLKVGLK-----------------------------------PD 344 (464)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~-----------------------------------~~ 344 (464)
++.-|..-...+...| ...-|...|+-.-.++.. .|
T Consensus 315 --tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd 392 (557)
T KOG3785|consen 315 --TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND 392 (557)
T ss_pred --ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 2333322222222222 233333433332222111 11
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 047873 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN-ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITY-NILL 422 (464)
Q Consensus 345 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~ 422 (464)
....-.+.++++..|.+.+|.++|-++....++ |..+|. .+.++|.+.+.++-|+.++-++. -+.+..++ ..+.
T Consensus 393 D~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIA 468 (557)
T KOG3785|consen 393 DDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIA 468 (557)
T ss_pred chhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHH
Confidence 111123566667777888888887666554444 445554 44567778888888777664442 22233333 3334
Q ss_pred HHHHhcCCHHHHHHHHHhc-CCCCchhHHHHhhccch
Q 047873 423 EGHCKHGNPEDFDKLQSEK-GLVSDYACYTSLVSKSS 458 (464)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~~-~~~p~~~~~~~ll~~~~ 458 (464)
..|-+.+.+=-|.+.+.++ .+.|+++.|..--.+|+
T Consensus 469 n~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACa 505 (557)
T KOG3785|consen 469 NDCYKANEFYYAAKAFDELEILDPTPENWEGKRGACA 505 (557)
T ss_pred HHHHHHHHHHHHHHhhhHHHccCCCccccCCccchHH
Confidence 5566777666665655553 45777777776666654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-10 Score=98.92 Aligned_cols=200 Identities=15% Similarity=0.039 Sum_probs=164.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 59 GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
...+..+...+...|++++|++.|++..... +.+...+..+...+...|++++|.+.+++..+..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3778889999999999999999999998775 446778888899999999999999999999987654 66788888999
Q ss_pred HHhcCChhhHHHHHHHHhhCCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGL-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 217 (464)
+...|++++|.+.+++...... +.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999886522 2234567778888999999999999999988764 3356678889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
|...+++..+. .+.+...+..+...+...|+. +.|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDV------AAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhH------HHHHHHHHHHHh
Confidence 99999998876 334566666777777777765 588888777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-09 Score=92.91 Aligned_cols=371 Identities=13% Similarity=0.090 Sum_probs=204.2
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.+..-|-.++-.+-...++++|++.|+.++ .+.||+ .+|.-+.-.=.+.|+++.....-.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl-------------------~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNAL-------------------KIEKDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHH-------------------hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444556677666777788888888888887 566777 777777666677778877777777
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-CCCChhhHHHH------HHHHHhcCChhhHHHHHHHHh
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-YSPSVYVFNVL------MHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~ 156 (464)
...+.. +.....|.....+..-.|+...|..+.+...+.. ..|+...+... .....+.|.++.|.+.+....
T Consensus 134 ~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 134 QLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 766663 2234456667777777788888888877776543 23444444322 223456677777777666554
Q ss_pred hCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCChhHHH-HHHHHHHHC------
Q 047873 157 KRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC-KENRLDDAE-LLLHEMCER------ 228 (464)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~------ 228 (464)
.. +......-..-...+.+.+++++|..++..++.. .||...|...+..+. +..+..++. .+|....+.
T Consensus 213 ~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 213 KQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred hH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 33 1111222234455667788888888888888776 466655554443333 232223333 444444332
Q ss_pred ----------------------------CCCCCHHHHHHHHHHHHhcCCcccccCHH-HHHHHHHHHHhCC---------
Q 047873 229 ----------------------------GLTPNDVIFTTLIDGHCKNGRIDMAGDMK-EARKIVDEMCTNG--------- 270 (464)
Q Consensus 229 ----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~--------- 270 (464)
|+++ ++..+...|-.-...+ -++ -+..+...+...|
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~---~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA---FLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH---HHHHHHHHHHhhcccccCCCcccccc
Confidence 1111 1111111111100000 000 0111111111111
Q ss_pred -CCCCHHh--HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhh
Q 047873 271 -LNPDKIT--YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDAT 347 (464)
Q Consensus 271 -~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 347 (464)
-+|.... +-.++..+-..|+++.|...++....+-+. -...|..-...+...|+++.|..++++..+.+ .+|...
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~I 441 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAI 441 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHH
Confidence 0333333 334556666777777777777777765221 23445555667777777777777777777765 345554
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC--cCHH----HHHH--HHHHHHhcCCHHHHHHHHHHH
Q 047873 348 YTMVIDCFCKNGDTKTGFRLLKEMRSDGHL--PAVE----TYNA--LMNGLCKHGQLKNANMLLDTM 406 (464)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~----~~~~--l~~~~~~~g~~~~a~~~~~~~ 406 (464)
-..-+....+.++.++|.++.....+.|.. -+.. .|-. =..+|.+.|++..|++=|...
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 445666666777777777777776665431 0111 1111 134566666666666544443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=100.75 Aligned_cols=230 Identities=11% Similarity=0.000 Sum_probs=192.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYF 90 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 90 (464)
+.++++|.+-|.+.+|.+.|+..+. -.|-..+|..|..+|.+..++..|+.+|......-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-------------------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f- 286 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-------------------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF- 286 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-------------------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-
Confidence 5789999999999999999999883 34566788888999999999999999999887763
Q ss_pred CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHH
Q 047873 91 RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL 170 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 170 (464)
|-+........+.+-..++.++|.++|+.+++.... +++....+...|.-.++++-|++.|+++.+.|+ .++..|+.+
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~Ni 364 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNI 364 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhH
Confidence 445555566778888899999999999999987654 777777777888889999999999999999996 488899999
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047873 171 INGHCKAKNLDEGFRLKSVMEGSGMRPD--VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNG 248 (464)
Q Consensus 171 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (464)
.-+|.-.++++-++.-|++....-..|+ ...|-.+.......|++..|.+.|+-....+.. ....++.+.-.-.+.|
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSG 443 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcC
Confidence 9999999999999999988875433333 456777888889999999999999998877433 5677888887778887
Q ss_pred CcccccCHHHHHHHHHHHHhC
Q 047873 249 RIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~ 269 (464)
++ ++|..++......
T Consensus 444 ~i------~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 444 DI------LGARSLLNAAKSV 458 (478)
T ss_pred ch------HHHHHHHHHhhhh
Confidence 76 5999999888764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.43 E-value=8e-10 Score=101.35 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=75.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 047873 314 TALISGFCRGGKVVEAERMLREMLKVGLKPD-DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK 392 (464)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (464)
..+...|...|++++|+.+.++.+.+. |+ +..|..-...+-+.|++.+|.+.++..+..... |-..-+..+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 444556666777777777777776653 33 456666667777777777777777777765332 44444555666667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHH
Q 047873 393 HGQLKNANMLLDTMLDLGVVPDDI------TY--NILLEGHCKHGNPEDFDKLQS 439 (464)
Q Consensus 393 ~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~~~~a~~~~~ 439 (464)
+|+.++|.+++..+.+.+..|-.. .| .....+|.+.|++..|.+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777777777766554333211 11 334456667777777666544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-09 Score=95.49 Aligned_cols=402 Identities=14% Similarity=0.033 Sum_probs=262.1
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
+++++..|..|.-++...|+++.+.+.|++... ..-.....|..+...|...|.-..|+.++
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~------------------~~~~~~e~w~~~als~saag~~s~Av~ll 380 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP------------------FSFGEHERWYQLALSYSAAGSDSKAVNLL 380 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------------------hhhhhHHHHHHHHHHHHHhccchHHHHHH
Confidence 567788889999999999999999999998762 11223378888999999999999999998
Q ss_pred HHHHhCCCCCC-hhcHHHHHHHHH-cCCChhhHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcC-----------Ch
Q 047873 83 RLLRKHYFRIP-ARGCRCLIDRMM-RTNLPTVTLGFYLEILDYG----YSPSVYVFNVLMHKLCKEG-----------KI 145 (464)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~-----------~~ 145 (464)
+.-......|+ ...+......|. +.+..+++++.-.+++... -...+..+..+.-+|...- ..
T Consensus 381 ~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h 460 (799)
T KOG4162|consen 381 RESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALH 460 (799)
T ss_pred HhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHH
Confidence 87655432233 333333334443 4577888888777777621 1123444555554544321 13
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
.++.+.+++..+.+ +.|+.+...+.--|+..++++.|.+..++..+.+-..+...|..+.-++...+++.+|+.+.+..
T Consensus 461 ~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 461 KKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45677777777664 33555555566677888999999999999988765678889999999999999999999999887
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC---------------------CC-----CC--CHH
Q 047873 226 CERGLTPN-DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN---------------------GL-----NP--DKI 276 (464)
Q Consensus 226 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---------------------~~-----~~--~~~ 276 (464)
... .++ -.....-+..-..-+ +.++++.....+... |. .| ...
T Consensus 540 l~E--~~~N~~l~~~~~~i~~~~~------~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 540 LEE--FGDNHVLMDGKIHIELTFN------DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHH--hhhhhhhchhhhhhhhhcc------cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 654 111 000000011111111 122333322222110 00 00 011
Q ss_pred hHHHHHHHHH-hCC--ChHHHHHHHHHHHHcCCC--CC------HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH
Q 047873 277 TYTILLDGFC-KEG--DLESALDIRKEMIKRGIE--LD------NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345 (464)
Q Consensus 277 ~~~~l~~~~~-~~~--~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 345 (464)
++..+..... +.. ..+.. +...... |+ ...|......+.+.+..++|...+.+..... +...
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~ 684 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSA 684 (799)
T ss_pred hhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhH
Confidence 1221111111 000 00000 1111111 12 2356667778888999999999988887764 4566
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANM--LLDTMLDLGVVPDDITYNILLE 423 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~ 423 (464)
..|......+...|..++|.+.|......+ +.++....++..++.+.|+..-|.. ++.++.+.+ +.+...|..+..
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~ 762 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGE 762 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 777878888889999999999999988853 2256778899999999998888887 999999864 348999999999
Q ss_pred HHHhcCCHHHHHHHHHh
Q 047873 424 GHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 424 ~~~~~g~~~~a~~~~~~ 440 (464)
.+.+.|+.++|...+..
T Consensus 763 v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHccchHHHHHHHHH
Confidence 99999999999888775
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-10 Score=88.48 Aligned_cols=205 Identities=13% Similarity=-0.024 Sum_probs=166.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
+.--|.-.|.+.|++..|.+-+++++ .+.|+. .+|..+...|.+.|..+.|.+.|++..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL-------------------~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls 97 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKAL-------------------EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-------------------HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Confidence 44566777889999999999999998 566777 8999999999999999999999999988
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCccc
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (464)
.. |-+..+.+..+..+|..|++++|...|++.+..- ......+|..+..+..+.|+++.|...|++..+.. +....+
T Consensus 98 l~-p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~ 175 (250)
T COG3063 98 LA-PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPA 175 (250)
T ss_pred cC-CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChH
Confidence 86 5567888889999999999999999999988642 22245677788888889999999999999988774 335667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047873 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237 (464)
Q Consensus 167 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 237 (464)
.-.+.....+.|++..|...++.....+. ++..+.-..++.-.+.|+.+.+-+.=..+.+. -|...-|
T Consensus 176 ~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 176 LLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 78888888999999999999999887764 78888888888888899988888777776654 3444433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-09 Score=98.06 Aligned_cols=307 Identities=12% Similarity=0.102 Sum_probs=172.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE-- 142 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 142 (464)
....+...|++++|++.++..... +.............+.+.|+.++|..+|..+++.++. +..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 344566777777777777664443 1222344556667777777777777777777776643 444444444444222
Q ss_pred ---CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChh-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047873 143 ---GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD-EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 143 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 218 (464)
.+.+...++|+++... -|.......+.-.+.....|. .+..++..+...|++ + +|+.|-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP-s--lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP-S--LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc-h--HHHHHHHHHcChhHHHHH
Confidence 2345556666666554 233333333322222222222 233344445555532 2 233333333322222222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhCCChHHHHH
Q 047873 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI--TYTILLDGFCKEGDLESALD 296 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~ 296 (464)
.+++...... ....+..... . ....-+|+.. ++..+...|...|++++|++
T Consensus 163 ~~l~~~~~~~---------------l~~~~~~~~~----~--------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 163 ESLVEEYVNS---------------LESNGSFSNG----D--------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred HHHHHHHHHh---------------hcccCCCCCc----c--------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 2222222211 0000000000 0 0001134442 34555677778888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047873 297 IRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGH 376 (464)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 376 (464)
.++..+++.+. .+..|..-...+-+.|++.+|...++.+...+ .-|...-+-.+..+.+.|+.++|.+++......+.
T Consensus 216 ~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 216 YIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 88888887543 46778888888888888888888888888876 34666777777888888888888888888777643
Q ss_pred CcCHHH------H--HHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 377 LPAVET------Y--NALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 377 ~~~~~~------~--~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
.|.... | .....+|.+.|++..|++.|....
T Consensus 294 ~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 294 DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 332211 1 344677888888888877665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-08 Score=85.47 Aligned_cols=415 Identities=11% Similarity=0.036 Sum_probs=254.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhc--CCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKK--GMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
+.+.......+..|..-|...+... ..++...+..++-.+ .+.|.+ ..-...+..|...++-+.|+.....++..-
T Consensus 49 l~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S-~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 49 LLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESS-YPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhHhhcccccccccccccc-CCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 3444455666777777777766422 222333333444444 333433 777778889999999999999887554331
Q ss_pred CCCChhcHHHHHHHHHcCC-ChhhHH--------------HHHHHHHhcC---------------CCCChhhHHHHHHHH
Q 047873 90 FRIPARGCRCLIDRMMRTN-LPTVTL--------------GFYLEILDYG---------------YSPSVYVFNVLMHKL 139 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~-~~~~a~--------------~~~~~~~~~~---------------~~~~~~~~~~l~~~~ 139 (464)
.....+.++..+.+.| +..++. +.+.-..+.+ .+|+.......+.++
T Consensus 128 ---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~ 204 (564)
T KOG1174|consen 128 ---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKAL 204 (564)
T ss_pred ---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHH
Confidence 1112233333333322 222222 2222122221 112222222333333
Q ss_pred Hh--cCChhhHHHHHHHHhhC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCh
Q 047873 140 CK--EGKIKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV-YTYSALINGLCKENRL 215 (464)
Q Consensus 140 ~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 215 (464)
+. .++...|..++-.+... -++-|......+...+...|+..+|...|+..... .|+. .....-.-.+.+.|+.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCH
Confidence 32 33444444444333322 23456667777888888888888888888887644 2322 2222233344567777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHH
Q 047873 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295 (464)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 295 (464)
+....+...+.... .-....|..-........+ +..|+.+-++.++... .+...+-.-...+...+++++|.
T Consensus 283 e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~------~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 283 EQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKK------FERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred hhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhh------HHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHH
Confidence 77777776665431 1123333333333333333 3688888888777532 23445555566778889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHH-HHHHh-cCChHHHHHHHHHHHh
Q 047873 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI-DCFCK-NGDTKTGFRLLKEMRS 373 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~-~~~~~~a~~~~~~~~~ 373 (464)
-.|+......+ .+..+|..++..|...|++.+|..+-+...+. ++.+..++..+. ..+.- ...-++|.+++++...
T Consensus 355 IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 355 IAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred HHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 99998887643 37789999999999999999998887776654 244566666553 33322 2335788888888777
Q ss_pred CCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCch
Q 047873 374 DGHLPA-VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDY 447 (464)
Q Consensus 374 ~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~ 447 (464)
. .|+ ....+.+...+...|+...++.++++.+. ..||....+.|...+.....+++|...+.. +.+.|+.
T Consensus 433 ~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 433 I--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred c--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 4 455 44667788889999999999999999885 478999999999999999999999888776 7777753
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-11 Score=97.82 Aligned_cols=229 Identities=14% Similarity=0.065 Sum_probs=117.2
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 047873 99 CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178 (464)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (464)
.+..+|.+.|.+.+|...++..++.. |.+.+|..|..+|.+..++..|+.++.+-... .+-+.....-..+.+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 34455555555555555555544432 34444444555555555555555555554433 1222222233444444555
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHH
Q 047873 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKE 258 (464)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (464)
+.++|.++|+...+.. +.++.....+...|.-.++++-|+..|+++.+.|+. ++..|..+.-+|.-.+++| -
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D------~ 376 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID------L 376 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh------h
Confidence 5555555555554432 223333333344444455555555555555555543 4455555555555555543 4
Q ss_pred HHHHHHHHHhCCCCCC--HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 047873 259 ARKIVDEMCTNGLNPD--KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336 (464)
Q Consensus 259 a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 336 (464)
++..|++....--.|+ ..+|-.+.......|++..|.+.|+-.+..+.. ....++.+.-.-.+.|++++|..++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 4555554443322222 223444555556667777777777766666443 4556666666666777777777777766
Q ss_pred HHC
Q 047873 337 LKV 339 (464)
Q Consensus 337 ~~~ 339 (464)
...
T Consensus 456 ~s~ 458 (478)
T KOG1129|consen 456 KSV 458 (478)
T ss_pred hhh
Confidence 553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-09 Score=93.92 Aligned_cols=205 Identities=8% Similarity=-0.054 Sum_probs=145.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|..+.+|..+...+...|+.++|.+.+.+...... ...+. .........+...|++++|.+.+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~ 66 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALA----------------ARATERERAHVEALSAWIAGDLPKALALL 66 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc----------------cCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56678899999999999999999888888764321 11222 33444455677889999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHH----cCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMM----RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
+++.... |.+...+.. ...+. ..+....+.+.+..... ...........+...+...|++++|.+.+++..+.
T Consensus 67 ~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 67 EQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred HHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9988875 434444432 22222 24555555555544111 11123344556677889999999999999999887
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-RPDV--YTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
. +.+...+..+...+...|++++|..+++....... .++. ..|..+...+...|++++|..++++....
T Consensus 144 ~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 144 N-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 5 44567788899999999999999999999876532 1232 34557888999999999999999998654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-09 Score=90.01 Aligned_cols=266 Identities=10% Similarity=-0.050 Sum_probs=146.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.....+...+...|+.++|+..|++....+ +-+..........+.+.|+.++...+...+..... ....-|-.-+...
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLL 310 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhh
Confidence 666666667777777777777777666554 22333444444445566666666655555544221 1333343444445
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAE 219 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 219 (464)
...+++..|+.+-++..+.+ +.+...+..-...+...++.++|.-.|+..+... +-+...|.-|+.+|...|++.+|.
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHH
Confidence 55666666666666655543 2334444444555666666777766666665542 234566667777777777776666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhCCChHHHHHH
Q 047873 220 LLLHEMCERGLTPNDVIFTTLI-DGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD-KITYTILLDGFCKEGDLESALDI 297 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 297 (464)
-.-+...+. ++.+..+...+. ..+.-.... -++|.+++++..+. .|+ ....+.+...+...|..+.++.+
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~-----rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRM-----REKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchh-----HHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence 555444332 122333333331 222221111 25666666665543 333 23445555566666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
++..+.. .||....+.+.+.+...+.+.+|.+.|..+.+.
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6666554 346666666666666666666666666666654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-08 Score=90.02 Aligned_cols=387 Identities=13% Similarity=0.049 Sum_probs=222.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR 91 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 91 (464)
=.++....|++++|+..|...+ .+.|.+ ..|+.-..+|...|++++|++--.+-.+.. |
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai-------------------~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p 67 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAI-------------------MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-P 67 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHH-------------------ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3466778999999999999998 666666 889999999999999999999888877775 4
Q ss_pred CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH---HHHHHHHhhC---CCCCCcc
Q 047873 92 IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA---QMVFDEFGKR---GLHATAV 165 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~---~~~~~~~ 165 (464)
.-+..|...+.++.-.|++++|+..|.+-++..+. +...++.+..++.......+. -.++..+... .......
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~ 146 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDP 146 (539)
T ss_pred chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccH
Confidence 45788999999999999999999999999987655 677777777776222100000 0011111000 0000011
Q ss_pred cHHHHHHHHHhc----------CChhHHHHHHHH-----HhhC-------CCCC----------------------CHHH
Q 047873 166 SFNTLINGHCKA----------KNLDEGFRLKSV-----MEGS-------GMRP----------------------DVYT 201 (464)
Q Consensus 166 ~~~~l~~~~~~~----------~~~~~a~~~~~~-----~~~~-------~~~~----------------------~~~~ 201 (464)
.|..++..+-+. ..+..+...+.. +... +..| -..-
T Consensus 147 ~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ 226 (539)
T KOG0548|consen 147 AYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK 226 (539)
T ss_pred HHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhH
Confidence 111111111100 001111111100 0000 0011 0112
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccc-cCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 047873 202 YSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMA-GDMKEARKIVDEMCTNGLNPDKITYTI 280 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (464)
...++++..+..+++.|++.+....+.. -+..-++..-.+|...+.+... +.-+.|.+.-.++... ...=...+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad-~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD-YKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH-HHHHHHHHHH
Confidence 3456777777777788887777777653 2444445555556555554331 1222333333332221 0000112233
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-------------------------HHHHHHHHhccCChHHHHHHHHH
Q 047873 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVA-------------------------FTALISGFCRGGKVVEAERMLRE 335 (464)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~ 335 (464)
+..++.+.++++.++..|.+.+.....|+... ...-...+.+.|++..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44466666777777777766655433332211 11123445667788888888888
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 047873 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415 (464)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 415 (464)
+++.. +-|...|+...-+|.+.|.+..|+.-.+..++.. ++....|.--..++....+++.|.+.|++.++. .|+.
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~ 459 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSN 459 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cchh
Confidence 77775 5567778888888888888888877777777652 223444555555666667778888888777764 3544
Q ss_pred HHHHHHHHHHHh
Q 047873 416 ITYNILLEGHCK 427 (464)
Q Consensus 416 ~~~~~l~~~~~~ 427 (464)
.-+..-+.-|..
T Consensus 460 ~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 460 AEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-10 Score=102.55 Aligned_cols=243 Identities=16% Similarity=0.124 Sum_probs=164.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhC-----C-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-
Q 047873 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGS-----G-MRPDVYT-YSALINGLCKENRLDDAELLLHEMCER-----GL- 230 (464)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 230 (464)
..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677899999999999999999887653 2 1233333 344778899999999999999998754 21
Q ss_pred -CCCHHHHHHHHHHHHhcCCcccccC-HHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhCCChHHHHHHHHHHHHc---
Q 047873 231 -TPNDVIFTTLIDGHCKNGRIDMAGD-MKEARKIVDEMCTNGLNPDK-ITYTILLDGFCKEGDLESALDIRKEMIKR--- 304 (464)
Q Consensus 231 -~~~~~~~~~l~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 304 (464)
+.-..+++.|...|.+.|+++.+.. .+.|.+++++.... ..|.. ..++.++..+...+++++|..+++...+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1124556677778999888752211 23344444441111 12222 23566777788889999999888876543
Q ss_pred CCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHC----CC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 305 GIEL----DNVAFTALISGFCRGGKVVEAERMLREMLKV----GL---KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 305 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
-+.+ -..+++.|...|...|++.+|..+++++... +. .-....++.+...|.+.+.+++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1122 2357888888888889999998888887643 11 11234677788888888888888888877544
Q ss_pred C----C--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 374 D----G--HLPAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 374 ~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
. | .+-...+|..|...|.+.|+++.|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 1 12234678888888888888888888877765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-08 Score=82.52 Aligned_cols=363 Identities=13% Similarity=0.084 Sum_probs=210.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 92 (464)
+..++.+-|++++|+..|.-+.. ...++...+..|.-.+.-.|.+.+|..+-.+..+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~------------------~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----- 119 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMN------------------KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----- 119 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhc------------------cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----
Confidence 46788899999999999998874 4556778888888888889999999988775322
Q ss_pred ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHH-H
Q 047873 93 PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL-I 171 (464)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~ 171 (464)
++-....++....+.++-++-..+.+.+.. ...--.+|.......-.+.+|+.++.++... .|+-...|.- .
T Consensus 120 ~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~A 192 (557)
T KOG3785|consen 120 TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMA 192 (557)
T ss_pred ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHH
Confidence 222333444455566776666666555543 1222334455544455678888888887765 3444444443 3
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CCh---------------------------------h
Q 047873 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE--NRL---------------------------------D 216 (464)
Q Consensus 172 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~---------------------------------~ 216 (464)
-+|.+..-++-+.+++....+. ++.++...|..+....+. |+. +
T Consensus 193 LCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 193 LCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred HHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence 4556677777777777766544 122333334333222221 211 2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHH----------------
Q 047873 217 DAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI---------------- 280 (464)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------- 280 (464)
.|++++-.+.+. .| ..-..++-.|.+.++ +++|..+.+++... .|-......
T Consensus 272 gALqVLP~L~~~--IP--EARlNL~iYyL~q~d------VqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 272 GALQVLPSLMKH--IP--EARLNLIIYYLNQND------VQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred cHHHhchHHHhh--Ch--Hhhhhheeeeccccc------HHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 222222222211 11 111223334445444 46887777765321 222222211
Q ss_pred -------------------------HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 047873 281 -------------------------LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335 (464)
Q Consensus 281 -------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (464)
+..++.-..++++++-.+..+..--.. |...--.+.++++..|++.+|+++|-+
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhh
Confidence 222222222333333333333332222 222233467788888999999999988
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047873 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV-ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414 (464)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 414 (464)
+....++.+..-...|.++|.+.+.++.|++++-++... .+. .....+..-|.+++.+--|.+.|+.+.. ..|+
T Consensus 419 is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~ 493 (557)
T KOG3785|consen 419 ISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPT 493 (557)
T ss_pred hcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCC
Confidence 776555544444466778999999999998887555432 222 3344556788999999999999988875 4788
Q ss_pred HHHHHHHHHH
Q 047873 415 DITYNILLEG 424 (464)
Q Consensus 415 ~~~~~~l~~~ 424 (464)
+.-|..--.+
T Consensus 494 pEnWeGKRGA 503 (557)
T KOG3785|consen 494 PENWEGKRGA 503 (557)
T ss_pred ccccCCccch
Confidence 8877653333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.1e-10 Score=95.63 Aligned_cols=204 Identities=11% Similarity=-0.055 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...|..++.+|...|++++|+..|++++ ...|+. .+|+.+...+...|++++|+..|++.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al-------------------~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQAL-------------------ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-------------------HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4668889999999999999999999998 556666 99999999999999999999999999
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcc
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 165 (464)
.+.. |-+..++..++..+...|++++|.+.+++.++..+. ++ ........+...+++++|...|.+..... +++.
T Consensus 125 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~- 199 (296)
T PRK11189 125 LELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQ- 199 (296)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-Cccc-
Confidence 9876 445678888999999999999999999999987644 33 22222333456788999999997755432 2332
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhC---CC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 047873 166 SFNTLINGHCKAKNLDEGFRLKSVMEGS---GM---RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT 238 (464)
Q Consensus 166 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 238 (464)
|. ........|+...+ +.++.+.+. .+ +....+|..+...+...|++++|+..|++..+.++ |+...+.
T Consensus 200 -~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~ 274 (296)
T PRK11189 200 -WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHR 274 (296)
T ss_pred -cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHH
Confidence 22 12233345665544 344444422 11 11345788899999999999999999999998753 3444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-08 Score=94.41 Aligned_cols=206 Identities=13% Similarity=0.127 Sum_probs=116.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh--------cCCCCChhhHHHHHHHHHhcC
Q 047873 2 HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET--------RGTHLPGLVLDALMIVYVDLG 73 (464)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g 73 (464)
|+.|+-.+|..+|..|...|+.+.|. +|.-|. ..+..-...+|..+..+ ....|...+|..|..+|...|
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hG 97 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHG 97 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhcc
Confidence 67899999999999999999999999 777774 44555566666666654 223556689999999999999
Q ss_pred ChhHHHHHHHH----HH----hCCCCCChhcH--------------HHHHHHHHcCCChhhHHHHHHHH-----------
Q 047873 74 FLDDAIQCFRL----LR----KHYFRIPARGC--------------RCLIDRMMRTNLPTVTLGFYLEI----------- 120 (464)
Q Consensus 74 ~~~~A~~~~~~----~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~----------- 120 (464)
+... ++..++ +. ..|+.....-+ ...+....-.|-++.+++++..+
T Consensus 98 Dli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v 176 (1088)
T KOG4318|consen 98 DLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV 176 (1088)
T ss_pred chHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence 9765 333222 21 11211111101 11111122223333333332111
Q ss_pred ------------------HhcCC-CCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChh
Q 047873 121 ------------------LDYGY-SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181 (464)
Q Consensus 121 ------------------~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (464)
.+.+. .|++.++..++.+-...|+.+.|..++.+|.+.|++.+..-|..++-+ .++..
T Consensus 177 fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q 253 (1088)
T KOG4318|consen 177 FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQ 253 (1088)
T ss_pred HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccch
Confidence 11111 255555556666555666666666666666666655555544444433 45555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047873 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213 (464)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 213 (464)
-+..++..|...|+.|+..|+...+-.+..+|
T Consensus 254 ~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 254 VFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 55555555666666666666555554444433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-08 Score=84.08 Aligned_cols=308 Identities=10% Similarity=0.020 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
+.-..-++..+..+|++.+|+..|+.++ ...|++ .++..-...|...|+...|+.-|.++
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAv-------------------e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAV-------------------EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH-------------------cCCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence 3444567888899999999999999998 566777 77777788899999999999999999
Q ss_pred HhCCCCCCh-hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC--hhhH------------HHHHHHHHhcCChhhHHH
Q 047873 86 RKHYFRIPA-RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS--VYVF------------NVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 86 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~~~~~~a~~ 150 (464)
.+. .|+- .+...-...+.+.|.+++|..=|+.++...+... ...+ ...+..+...|+...|+.
T Consensus 99 lel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 99 LEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred Hhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 887 4553 3445566778899999999999999998764311 1111 223344666789999999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047873 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 230 (464)
....+.+.. +-+...+..-..+|...|.+..|+.-++...+.. ..+..++-.+-..+...|+.+.++...++..+.
T Consensus 177 ~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-- 252 (504)
T KOG0624|consen 177 MITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-- 252 (504)
T ss_pred HHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--
Confidence 999988764 4577888888999999999999998887776654 346667777888889999999999999988876
Q ss_pred CCCHHH----HHHH---HHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHhCCChHHHHHHHHH
Q 047873 231 TPNDVI----FTTL---IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI---TYTILLDGFCKEGDLESALDIRKE 300 (464)
Q Consensus 231 ~~~~~~----~~~l---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~ 300 (464)
.||... |-.+ ...+......-..+++.++++..+...+..+..... .+..+-.++...+++.+|++...+
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 344221 2111 111111111111234567777777776654332222 345556677778888899988888
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCC
Q 047873 301 MIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340 (464)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (464)
+++.... |..++..-..+|.-...++.|+.-|+.+.+.+
T Consensus 333 vL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 333 VLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8876432 57788888888888888999999888888764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-09 Score=85.20 Aligned_cols=325 Identities=13% Similarity=0.138 Sum_probs=215.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL-PGLVLDALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
+.+.+..+.+..++.+|++++.... ...| +...++.+...|....++..|-..++++-..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~-------------------Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql 73 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSEL-------------------ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL 73 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH-------------------hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777788999999999988876 3345 4488889999999999999999999998876
Q ss_pred CCCCChhcHH-HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHH--HH--HHhcCChhhHHHHHHHHhhCCCCCC
Q 047873 89 YFRIPARGCR-CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM--HK--LCKEGKIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 89 ~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~--~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (464)
. |...-|. .-...+-+.+.+..|+.+...|... ....+..+ .+ ....+++..+..+.++....| +
T Consensus 74 ~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~ 143 (459)
T KOG4340|consen 74 H--PELEQYRLYQAQSLYKACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---E 143 (459)
T ss_pred C--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---c
Confidence 4 4433333 3456677889999999998887642 22222222 22 335688999999999887543 5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------------
Q 047873 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT------------ 231 (464)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------ 231 (464)
..+.+.......+.|+++.|.+-|+...+-+--.....|+.-+ ++.+.|+++.|++...++.++|+.
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 5666666667779999999999999888764334556777544 556789999999999999887643
Q ss_pred -CCHH--------HHHHHHHH-------HHhcCCcccccCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhCCChHHH
Q 047873 232 -PNDV--------IFTTLIDG-------HCKNGRIDMAGDMKEARKIVDEMCTNG-LNPDKITYTILLDGFCKEGDLESA 294 (464)
Q Consensus 232 -~~~~--------~~~~l~~~-------~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a 294 (464)
||.. .-+.++.+ +.+. ++++.|.+.+.+|..+. ...|++|...+.-. -..+++...
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~------~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g 295 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL------RNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEG 295 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhc------ccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcccc
Confidence 1211 11222222 2333 34467887777775432 23466666555432 234566667
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHh-cCChHHHHHHHHHHH
Q 047873 295 LDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK-PDDATYTMVIDCFCK-NGDTKTGFRLLKEMR 372 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~ 372 (464)
.+-+.-++..++- ...||..++..||+..-++-|.+++.+-...... .+...|+ ++.++.. .-..++|.+-+..+.
T Consensus 296 ~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 296 FEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 7767777777553 5678888999999999999998887653221111 1222233 3444433 345666666555544
Q ss_pred h
Q 047873 373 S 373 (464)
Q Consensus 373 ~ 373 (464)
+
T Consensus 374 ~ 374 (459)
T KOG4340|consen 374 G 374 (459)
T ss_pred H
Confidence 3
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-09 Score=99.57 Aligned_cols=270 Identities=16% Similarity=0.166 Sum_probs=174.4
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh
Q 047873 50 LETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV 129 (464)
Q Consensus 50 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 129 (464)
.+..|+.|+..+|..++.-|+..|+.+.|- +|..|.-.+.+.....+..++......++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 333499999999999999999999999988 9999988887888888999998888888877664 5788
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHH
Q 047873 130 YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS-GMRPDVYTYSALING 208 (464)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 208 (464)
.+|..|..+|...||... |+...+ ....+...+...|.-.....++..+.-. +.-||..+ ++..
T Consensus 84 Dtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ill 148 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILL 148 (1088)
T ss_pred hHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHH
Confidence 999999999999999766 222222 1122233344445444444444443221 22334332 3333
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhC
Q 047873 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288 (464)
Q Consensus 209 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 288 (464)
..-.|-++.+++++..+...... .+. ...++-+..... .+++...+.+.... .|+..+|..++.+-.-.
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~-~p~--~vfLrqnv~~nt-----pvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWN-APF--QVFLRQNVVDNT-----PVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCccccc-chH--HHHHHHhccCCc-----hHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 44456666666666555432111 011 112333322222 23333333333332 36777788888877788
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 047873 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360 (464)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 360 (464)
|+.+.|..++.+|.+.|++.+..-|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+...|.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888888888888877777766666554 67777777788888888888888887776666665433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.2e-10 Score=100.39 Aligned_cols=254 Identities=17% Similarity=0.118 Sum_probs=142.5
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcC-CCCCh-hhHHHHHHHHHhcCChhHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRG-THLPG-LVLDALMIVYVDLGFLDDAIQ 80 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~ 80 (464)
+|.-..+...|...|+..|+++.|..++++++.. +-+..| ..|.. ...+.+...|...+++++|+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~------------l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ 262 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRI------------LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVN 262 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH------------HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444556667999999999999999999999842 111112 12233 344457778888888888888
Q ss_pred HHHHHHhC-----CC--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-----CC-CC-hhhHHHHHHHHHhcCChh
Q 047873 81 CFRLLRKH-----YF--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-----YS-PS-VYVFNVLMHKLCKEGKIK 146 (464)
Q Consensus 81 ~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~-~~~~~~l~~~~~~~~~~~ 146 (464)
+|+++... |. +--..++..|...|.+.|++++|...++++++.- .. |. ...++.+...+...++++
T Consensus 263 ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 263 LYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 88876542 21 1113445666666777777777766666554321 00 11 112233444444455555
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
+|..++....+. +.........--..+++.|...|...|++++|.++|++..
T Consensus 343 ea~~l~q~al~i----------------------------~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 343 EAKKLLQKALKI----------------------------YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred HHHHHHHHHHHH----------------------------HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 555444432211 0000000000123456667777777777777777776665
Q ss_pred HC----CC---CCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh----CC--CCCCHHhHHHHHHHHHhCCChHH
Q 047873 227 ER----GL---TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT----NG--LNPDKITYTILLDGFCKEGDLES 293 (464)
Q Consensus 227 ~~----~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~ 293 (464)
.. +. .-....++.+...|.+.+++. +|.++|.+... .| .+-...+|..|...|...|+++.
T Consensus 395 ~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~------~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~ 468 (508)
T KOG1840|consen 395 QILRELLGKKDYGVGKPLNQLAEAYEELKKYE------EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEA 468 (508)
T ss_pred HHHHhcccCcChhhhHHHHHHHHHHHHhcccc------hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHH
Confidence 43 11 112344556666666666553 44444443321 12 22234678888888888888888
Q ss_pred HHHHHHHHH
Q 047873 294 ALDIRKEMI 302 (464)
Q Consensus 294 a~~~~~~~~ 302 (464)
|.++.+.+.
T Consensus 469 a~~~~~~~~ 477 (508)
T KOG1840|consen 469 AEELEEKVL 477 (508)
T ss_pred HHHHHHHHH
Confidence 888877766
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.7e-12 Score=75.91 Aligned_cols=50 Identities=48% Similarity=0.891 Sum_probs=38.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047873 378 PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427 (464)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 427 (464)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777788888777777777788788777777753
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-09 Score=82.55 Aligned_cols=199 Identities=14% Similarity=0.019 Sum_probs=167.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.+...|.-.|.+.|++..|.+-+++..+.+ |.+..+|..+...|.+.|..+.|.+.|++.++..+. +..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 566778889999999999999999999997 557788999999999999999999999999998776 888999999999
Q ss_pred HhcCChhhHHHHHHHHhhC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047873 140 CKEGKIKDAQMVFDEFGKR-GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 218 (464)
|..|++++|.+.|+..... ....-..+|..+.-+..+.|+++.|...|++..+.. +-...+...+.+...+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998765 222345688888889999999999999999998874 33456778899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
...++.....+. ++..+.-..|+.-...|+. ..+.++=.++..
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~------~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDR------AAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccH------HHHHHHHHHHHH
Confidence 999999988765 7888877778877777775 244444444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-09 Score=90.37 Aligned_cols=127 Identities=11% Similarity=-0.070 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..|..+...|.+.|++++|+..|++..+.. |.+..+|..+...+...|++++|...|++.++..+. +..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 445555556666666666666666665554 334555666666666666666666666666654433 444555555555
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVM 190 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 190 (464)
...|++++|.+.|+...+. .|+..........+...+++++|...++..
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5666666666666665554 222211111122223344555666555443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-07 Score=79.92 Aligned_cols=413 Identities=12% Similarity=0.094 Sum_probs=250.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|.|+.+|+.||+-+..+ -.+++.+.|+++. +.-|.. ..|..-+..-.+.++++...++|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~-------------------~~FP~s~r~W~~yi~~El~skdfe~VEkLF 76 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLV-------------------NVFPSSPRAWKLYIERELASKDFESVEKLF 76 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHh-------------------ccCCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 67899999999966655 9999999999998 445555 99999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHc-CCChh----hHHHHHHHHH-hcCCCC-ChhhHHHHHHH---------HHhcCChh
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMR-TNLPT----VTLGFYLEIL-DYGYSP-SVYVFNVLMHK---------LCKEGKIK 146 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~----~a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~~~~~ 146 (464)
.+..... .+...|...+.--.+ .++.. .-.+.|+-.+ +.|..+ +...|+..+.. +....+++
T Consensus 77 ~RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~ 154 (656)
T KOG1914|consen 77 SRCLVKV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRIT 154 (656)
T ss_pred HHHHHHH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHH
Confidence 9988763 345566665544332 22222 2334444443 345332 33455555543 33444566
Q ss_pred hHHHHHHHHhhCCCCCCcccHH------HHHHHH-------HhcCChhHHHHHHHHHhh--CCCCCCHHH----------
Q 047873 147 DAQMVFDEFGKRGLHATAVSFN------TLINGH-------CKAKNLDEGFRLKSVMEG--SGMRPDVYT---------- 201 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~------~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------- 201 (464)
...++|.++....+.-=...|+ .=|+.. -+...+..|.++++++.. .|...+..+
T Consensus 155 ~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~ 234 (656)
T KOG1914|consen 155 AVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEI 234 (656)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHH
Confidence 7777888776542211011121 111111 123456677777776653 243333222
Q ss_pred -----HHHHHHHHHhcCCh--------hHHHHHHHHHH-HCCCCCCHHHH-H----HHHHHHHhcCCccccc-CHHHHHH
Q 047873 202 -----YSALINGLCKENRL--------DDAELLLHEMC-ERGLTPNDVIF-T----TLIDGHCKNGRIDMAG-DMKEARK 261 (464)
Q Consensus 202 -----~~~l~~~~~~~~~~--------~~a~~~~~~~~-~~~~~~~~~~~-~----~l~~~~~~~~~~~~~~-~~~~a~~ 261 (464)
|..+|..=...+-- ....=++++.. -.+..|+.... . ..-..+...|+...+. --.++..
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 22222221111110 01111222211 11222221110 0 1111222333322211 1356667
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 262 IVDEMCTNGLNPDKITYTILLDGFCKEG---DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
++++.+..-...+..+|..+...--..- ..+.....+++++..-..--..+|..+++.-.+..-+..|..+|.++.+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 7777665433333344444333221111 3556666777766543222346788889988899999999999999999
Q ss_pred CCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 047873 339 VGLKP-DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD--D 415 (464)
Q Consensus 339 ~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~ 415 (464)
.+..+ ...++++++..++ .++..-|.++|+.-.+. +..++.-....+..+.+.|+-..+..+|++....++.|+ .
T Consensus 395 ~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~ 472 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK 472 (656)
T ss_pred ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH
Confidence 87665 6667778887765 67889999999987775 444556667889999999999999999999998766664 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 416 ITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
..|..++.--..-|+...+.++-++
T Consensus 473 ~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 473 EIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHH
Confidence 7899999999999999999888765
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=74.03 Aligned_cols=49 Identities=43% Similarity=0.895 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047873 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245 (464)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (464)
||..+|+.++++|++.|++++|.++|++|.+.|+.||..+|+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-07 Score=82.90 Aligned_cols=381 Identities=14% Similarity=0.083 Sum_probs=233.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (464)
.=++.+...|++++|++...++...+ |-+..++.+-+.++.+.+++++|+.+.+.-... ..+...+-.=+.+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34566888999999999999999886 556778888888999999999999665543211 111111112234455789
Q ss_pred ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--------------------------
Q 047873 144 KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP-------------------------- 197 (464)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------- 197 (464)
..++|+..++-... .+..+...-.+.+.+.+++++|+++|+.+.+.+.+.
T Consensus 94 k~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 94 KLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred cHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 99999999983322 234466777888999999999999999986543210
Q ss_pred -CHHHHHHHH---HHHHhcCChhHHHHHHHHHHHC-------CCCCC------H-HHHHHHHHHHHhcCCcccccCHHHH
Q 047873 198 -DVYTYSALI---NGLCKENRLDDAELLLHEMCER-------GLTPN------D-VIFTTLIDGHCKNGRIDMAGDMKEA 259 (464)
Q Consensus 198 -~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~-------~~~~~------~-~~~~~l~~~~~~~~~~~~~~~~~~a 259 (464)
...+|..+. ..+...|++.+|+++++...+. +-.-+ . ..-..+.-.+...|+. ++|
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt------~ea 243 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT------AEA 243 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch------HHH
Confidence 111333333 3455789999999999988321 10000 1 1122334445566665 699
Q ss_pred HHHHHHHHhCCCCCCHHh----HHHHHHHHHhCCChHH--HHHHHH----------------------------------
Q 047873 260 RKIVDEMCTNGLNPDKIT----YTILLDGFCKEGDLES--ALDIRK---------------------------------- 299 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~--a~~~~~---------------------------------- 299 (464)
..++...+.... +|... -|.++.. ..-.++.. ++..++
T Consensus 244 ~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 244 SSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999988754 33311 1222211 11111100 000000
Q ss_pred ------HHHHc--CCCCCHHHHHHHHHHHhc--cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 047873 300 ------EMIKR--GIELDNVAFTALISGFCR--GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLK 369 (464)
Q Consensus 300 ------~~~~~--~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 369 (464)
+.... +..| ...+..++..+.+ ...+..+..++....+........+....++.....|+++.|.+++.
T Consensus 322 k~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 01111 1111 2344444443332 22456677777666554322223455666777889999999999999
Q ss_pred --------HHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 047873 370 --------EMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL--GVVP----DDITYNILLEGHCKHGNPEDFD 435 (464)
Q Consensus 370 --------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~a~ 435 (464)
.+.+.+. .+.+...+...+.+.++.+.|..++.+.+.. .-.+ -..++..++..-.+.|+.++|.
T Consensus 401 ~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 401 LFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 4444333 3455667777788888887788877776531 0111 2234444455556889999999
Q ss_pred HHHHh-cC-CCCchhHHHHhhccchhhhh
Q 047873 436 KLQSE-KG-LVSDYACYTSLVSKSSKYRQ 462 (464)
Q Consensus 436 ~~~~~-~~-~~p~~~~~~~ll~~~~~~~~ 462 (464)
..+++ .. ..+|..+...++.++++.+.
T Consensus 479 s~leel~k~n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 479 SLLEELVKFNPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhcCH
Confidence 99999 45 45578899999998887654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-07 Score=86.03 Aligned_cols=201 Identities=11% Similarity=-0.046 Sum_probs=130.1
Q ss_pred CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCh-hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 57 LPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR-IPA-RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 57 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
||. ..+..+...+...|+.+.+.+.+....+.... ++. +........+...|++++|.+.++++++..+. +...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 444 67777788888889999988888777655321 121 22223344566789999999999999886544 444444
Q ss_pred HHHHHHHh----cCChhhHHHHHHHHhhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047873 134 VLMHKLCK----EGKIKDAQMVFDEFGKRGLHAT-AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208 (464)
Q Consensus 134 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (464)
. ...+.. .+..+.+.+.++.... ..|+ ......+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 2 222333 3444555555544111 1222 2333455667788999999999999988764 3456677888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 209 LCKENRLDDAELLLHEMCERGLT-PND--VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 209 ~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
+...|++++|...+++..+.... ++. ..|..+...+...|++ ++|..++++...
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~------~~A~~~~~~~~~ 214 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY------EAALAIYDTHIA 214 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH------HHHHHHHHHHhc
Confidence 89999999999999888765321 222 2344566677777765 588888888754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-07 Score=87.37 Aligned_cols=403 Identities=10% Similarity=-0.020 Sum_probs=246.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
..+|..|++.|...-+...|.+.|.++. .+.++. .++..+...|.+..+++.|..+.-..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAF-------------------eLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAF-------------------ELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------cCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4578888888888778888999998888 666776 89999999999999999999984333
Q ss_pred HhCCC-CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCc
Q 047873 86 RKHYF-RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164 (464)
Q Consensus 86 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 164 (464)
-+... ..-...|....-.+.+.++...|+..|+..++..+. |...|..++.+|.+.|++..|.++|++.... .|+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 32210 011233555666778889999999999999998776 8999999999999999999999999988765 3332
Q ss_pred ccHH--HHHHHHHhcCChhHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhcCCh-------hHHHHHHHHHHHCC
Q 047873 165 VSFN--TLINGHCKAKNLDEGFRLKSVMEGS------GMRPDVYTYSALINGLCKENRL-------DDAELLLHEMCERG 229 (464)
Q Consensus 165 ~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~ 229 (464)
+|. ...-..+..|.+.+++..+...... +..--..++-.+...+.-.|=. +++++.|.-.....
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 222 2233445789999999988877632 1111122232222222222322 23333333332222
Q ss_pred CCCCHHHHHHHHHHHHhcCCccc-ccCHHHHHHHH-HHHHhCCCCC--------------------CHHhHHHHHHHHHh
Q 047873 230 LTPNDVIFTTLIDGHCKNGRIDM-AGDMKEARKIV-DEMCTNGLNP--------------------DKITYTILLDGFCK 287 (464)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~a~~~~-~~~~~~~~~~--------------------~~~~~~~l~~~~~~ 287 (464)
...+...|-.+..+|.-.-.... ... .....++ .+....+..| +..+|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn-~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVN-MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchH-HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 12233333333222211100000 000 0111111 1111111111 12233334333332
Q ss_pred ----CC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 047873 288 ----EG----DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG 359 (464)
Q Consensus 288 ----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 359 (464)
.+ +...|+..+...++.... +..+|+.|.-. ...|++.-|...|-+-.... +....+|..+...+.+..
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence 11 233566666666655332 55666666544 66688888888887766654 456678888888889999
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH--H--hCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047873 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTM--L--DLGVVPDDITYNILLEGHCKHGNPEDFD 435 (464)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~--~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 435 (464)
+++.|...|...+... +.+...|-.........|+.-++..+|..- . ..|--|...-|..........|+.++-+
T Consensus 865 d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 9999999999988852 235556665555566778888888888662 2 3345567777777777777888877744
Q ss_pred HH
Q 047873 436 KL 437 (464)
Q Consensus 436 ~~ 437 (464)
.-
T Consensus 944 ~t 945 (1238)
T KOG1127|consen 944 NT 945 (1238)
T ss_pred HH
Confidence 33
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-06 Score=80.35 Aligned_cols=372 Identities=16% Similarity=0.055 Sum_probs=245.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHH-HhcCChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVY-VDLGFLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~-~~~g~~~~A~~~~~ 83 (464)
..+.|+.+.-.|+..|.-..|..+++..... .-.|++ ..+......| .+.|..++++....
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~-----------------~~~ps~~s~~Lmasklc~e~l~~~eegldYA~ 418 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKK-----------------SEQPSDISVLLMASKLCIERLKLVEEGLDYAQ 418 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhccc-----------------ccCCCcchHHHHHHHHHHhchhhhhhHHHHHH
Confidence 4567888999999999999999998887632 111444 4444444444 46678889888888
Q ss_pred HHHhC--C--CCCChhcHHHHHHHHHcC----C-------ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 84 LLRKH--Y--FRIPARGCRCLIDRMMRT----N-------LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 84 ~~~~~--~--~~~~~~~~~~l~~~~~~~----~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
++... + -...+..+..++-+|... . ...++++.+++..+.++. |+.+..-+.--|+..++.+.|
T Consensus 419 kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sA 497 (799)
T KOG4162|consen 419 KAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSA 497 (799)
T ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHH
Confidence 87662 1 123455666666665432 1 234678888888887765 555544566678999999999
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD-VYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+..... .|+ ......-+..-...++.++++.....+..
T Consensus 498 l~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 498 LDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 999999988754668889999999999999999999999887643 111 11111111222224555554444333321
Q ss_pred C---------------------C-------CCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCC--CCC---
Q 047873 228 R---------------------G-------LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL--NPD--- 274 (464)
Q Consensus 228 ~---------------------~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--- 274 (464)
. | ..-...++..+.......+.. .+ .+.. +....+ .|+
T Consensus 576 ~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~--~~-se~~------Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 576 LWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS--AG-SELK------LPSSTVLPGPDSLW 646 (799)
T ss_pred HHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh--cc-cccc------cCcccccCCCCchH
Confidence 1 0 000111222222211110000 00 0000 111111 122
Q ss_pred ---HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 047873 275 ---KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMV 351 (464)
Q Consensus 275 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 351 (464)
...|......+.+.++.++|...+.+.....+ .....|......+...|..++|...|......+ +.+.....++
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Al 724 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 12345566778888999999988888877643 367778888888889999999999999998865 3345678899
Q ss_pred HHHHHhcCChHHHHH--HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 352 IDCFCKNGDTKTGFR--LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 352 l~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
..++.+.|+..-|.. ++..+.+.+. .+...|-.+...+-+.|+.+.|.+.|....+.
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999999998887777 9999998743 37899999999999999999999999988753
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-06 Score=89.59 Aligned_cols=339 Identities=12% Similarity=0.011 Sum_probs=213.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC------CC--hhhHHHHH
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS------PS--VYVFNVLM 136 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~ 136 (464)
....+...|+++.+..+++.+.......+..........+...|+++++..++..+...-.. +. ......+.
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 34455667888888888776532211122333344455666789999999999887643111 11 12222334
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHHHHHHHHH
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKRGLHATA----VSFNTLINGHCKAKNLDEGFRLKSVMEGS----GM-RPDVYTYSALIN 207 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~ 207 (464)
..+...|+++.|...++.........+. ...+.+...+...|+++.|...+++.... |. .....++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 5567899999999999987653111111 23455666777899999999999887642 21 111234556677
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC--CCC--CHH
Q 047873 208 GLCKENRLDDAELLLHEMCER----GLT--P-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG--LNP--DKI 276 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~ 276 (464)
.+...|++++|...+++.... +.. + ....+..+...+...|++ ++|...+.+..... ..+ ...
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~------~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL------DEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH------HHHHHHHHHhHHhhhccCchHHHH
Confidence 888999999999998886553 211 1 122333444556666665 58888888775431 112 233
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHhccCChHHHHHHHHHHHHCCCCCC---Hhh
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIEL-DNVAF-----TALISGFCRGGKVVEAERMLREMLKVGLKPD---DAT 347 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 347 (464)
.+..+...+...|+++.|.+.++......... ....+ ...+..+...|+.+.|..++........... ...
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 45556677889999999999988875531110 11111 1122444568899999999877654221111 111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 348 YTMVIDCFCKNGDTKTGFRLLKEMRSD----GHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
+..+..++...|++++|...+++.... +..+ ...+...+..++.+.|+.++|...+.+..+.
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356777888999999999999988764 2222 2345667778889999999999999998864
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-07 Score=81.07 Aligned_cols=216 Identities=10% Similarity=0.014 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcC-ChhHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLG-FLDDAIQCFRLL 85 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~ 85 (464)
.+++.+-.++...+..++|+.++.+++ .+.|+. .+|+....++...| ++++++..++++
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI-------------------~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~ 98 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVI-------------------RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDV 98 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH-------------------HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 456667777777888888888888888 567777 89998888888888 689999999999
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCCh--hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLP--TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (464)
...+ +-+..+|......+.+.|.. ++++..++++++..+. +..+|+....++...|+++++++.++++.+.+ +.|
T Consensus 99 i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N 175 (320)
T PLN02789 99 AEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRN 175 (320)
T ss_pred HHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCc
Confidence 9886 44666777666666666653 6789999999988776 89999999999999999999999999999876 346
Q ss_pred cccHHHHHHHHHhc---CCh----hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCC
Q 047873 164 AVSFNTLINGHCKA---KNL----DEGFRLKSVMEGSGMRPDVYTYSALINGLCKE----NRLDDAELLLHEMCERGLTP 232 (464)
Q Consensus 164 ~~~~~~l~~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~ 232 (464)
...|+.....+.+. |.+ +..+.....++... +-+...|+.+...+... +...+|.+.+.+..+.++ .
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~ 253 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-N 253 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-C
Confidence 77787776666554 223 45667776666654 44677888888887773 345668888888776543 3
Q ss_pred CHHHHHHHHHHHHhc
Q 047873 233 NDVIFTTLIDGHCKN 247 (464)
Q Consensus 233 ~~~~~~~l~~~~~~~ 247 (464)
+......|+..|+..
T Consensus 254 s~~al~~l~d~~~~~ 268 (320)
T PLN02789 254 HVFALSDLLDLLCEG 268 (320)
T ss_pred cHHHHHHHHHHHHhh
Confidence 677788888888763
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-06 Score=78.04 Aligned_cols=379 Identities=13% Similarity=-0.016 Sum_probs=229.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
.++....|+++.|+..|-.....+ |++...|..-..++.+.|++++|+.=-.+..+..+. =+..|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 345677899999999999999887 557788888999999999999998877777765432 356889999999999999
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHH---HHHHHHhhC---CCCCCHHHHHHHHHHHHhc-------
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGF---RLKSVMEGS---GMRPDVYTYSALINGLCKE------- 212 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~~~~l~~~~~~~------- 212 (464)
++|+..|.+-.+.. +.+...++-+..++.......+.+ .++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988764 345666677777662110000000 011111100 0000111222222221110
Q ss_pred ---CChhHHHHHHHHH-----HHC-------CCCC------------C----------HHHHHHHHHHHHhcCCcccccC
Q 047873 213 ---NRLDDAELLLHEM-----CER-------GLTP------------N----------DVIFTTLIDGHCKNGRIDMAGD 255 (464)
Q Consensus 213 ---~~~~~a~~~~~~~-----~~~-------~~~~------------~----------~~~~~~l~~~~~~~~~~~~~~~ 255 (464)
.++..+...+... ... +..| | ..-...+.++..+..++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f----- 240 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF----- 240 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH-----
Confidence 0111111111100 000 0001 0 11234556666665544
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHH-HHH-------HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChH
Q 047873 256 MKEARKIVDEMCTNGLNPDKITYTIL-LDG-------FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327 (464)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (464)
..+++-+....... ...+|... ..+ ....+..+.|.+.-.+.... ...=...+..+..+|.+.++++
T Consensus 241 -~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad-~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 241 -ETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD-YKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred -HHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH-HHHHHHHHHHhhhhhhhHHhHH
Confidence 57887777776643 22333222 111 22334445555544443321 0001123333555777888999
Q ss_pred HHHHHHHHHHHCCCCCCHhhH-------------------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHH
Q 047873 328 EAERMLREMLKVGLKPDDATY-------------------------TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVET 382 (464)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~-------------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 382 (464)
.+...|.+.......|+...- ..-...+.+.|++..|+..|.++++.. +-|...
T Consensus 316 ~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~l 394 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARL 394 (539)
T ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHH
Confidence 999999887765434432221 112455678899999999999999985 458899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhHHHHhhccchh
Q 047873 383 YNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYACYTSLVSKSSK 459 (464)
Q Consensus 383 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~~~~ll~~~~~ 459 (464)
|....-+|.+.|.+..|+.-.+...+.. ++....|..=..++....+++.|.+.+.+ ....|+..-+.--++.|..
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 9999999999999999999988888752 23444555556666677889999998887 6777776666555555544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-06 Score=80.87 Aligned_cols=363 Identities=12% Similarity=0.091 Sum_probs=205.2
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 96 (464)
..+-|.+++|..+|++.-. +..|-..|...|.|++|+++-+.-.+..+ ..+
T Consensus 810 AieLgMlEeA~~lYr~ckR--------------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~T 860 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR--------------------------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNT 860 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH--------------------------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhh
Confidence 3456677777777776641 22333456667778888777765333321 234
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHH----------HhcC---------CCCChhhHHHHHHHHHhcCChhhHHHHHHHHhh
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEI----------LDYG---------YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
|......+...++.+.|++.|++. +... -..|...|.-....+-..|+.+.|+.+|.....
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 555555556666777777766652 1111 112444555555555566667777766665432
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047873 158 RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237 (464)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 237 (464)
|-.+++..+-.|+.++|-++-++- -|...+..+.+.|-..|++.+|...|.+... +
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------f 996 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------F 996 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------H
Confidence 445555666667777776665542 3666777899999999999999999987653 2
Q ss_pred HHHHHHHHhcCCccc---------ccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHH--------H
Q 047873 238 TTLIDGHCKNGRIDM---------AGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK--------E 300 (464)
Q Consensus 238 ~~l~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~ 300 (464)
...|+.|-.++--|. ..+.-.|-++|++.-. -+...+..|-+.|.+.+|+++-- +
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 333333333221110 1233455556655421 12233445677787777776521 1
Q ss_pred HH--HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCC
Q 047873 301 MI--KRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-GHL 377 (464)
Q Consensus 301 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~ 377 (464)
++ +.+...|+...+.-...++...++++|..++-..++ |...+..|...+ ..-..++-+.|.-. .-.
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCC
Confidence 22 223345778888888888889999999988876654 333444443332 22223333333211 112
Q ss_pred cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----------------HHHH
Q 047873 378 PA----VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED----------------FDKL 437 (464)
Q Consensus 378 ~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----------------a~~~ 437 (464)
|+ ......+...|.++|.+..|.+-|-++-+ + ...++++.++|+.++ |..+
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd---K------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANy 1209 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD---K------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANY 1209 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh---H------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhh
Confidence 22 23456677888888888888776655421 1 124456666666654 4444
Q ss_pred HHhcCCCCchhHHHHhhccchh
Q 047873 438 QSEKGLVSDYACYTSLVSKSSK 459 (464)
Q Consensus 438 ~~~~~~~p~~~~~~~ll~~~~~ 459 (464)
++.+..+.++.+..-++..|.|
T Consensus 1210 LQtlDWq~~pq~mK~I~tFYTK 1231 (1416)
T KOG3617|consen 1210 LQTLDWQDNPQTMKDIETFYTK 1231 (1416)
T ss_pred hhhcccccChHHHhhhHhhhhc
Confidence 5555555555555555555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-06 Score=87.86 Aligned_cols=373 Identities=10% Similarity=0.003 Sum_probs=226.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.........+...|++.+|+..+...... ..-..........+...|++..+..++..+.......++.........+
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 44455566677777877777655443111 0001122223344556777777777766542211122334444556667
Q ss_pred HhcCChhhHHHHHHHHhhCC--C----CCC--cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRG--L----HAT--AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD----VYTYSALIN 207 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~--~----~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~ 207 (464)
...|+++++...+......- . .+. ......+...+...|+++.|...++.....-...+ ....+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 78899999999998775431 0 011 11122233455679999999999998765311112 134456677
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC----CCC--C-CH
Q 047873 208 GLCKENRLDDAELLLHEMCER----GLT-PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN----GLN--P-DK 275 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 275 (464)
.+...|++++|...+++.... +.. ........+...+...|++ +.|...+++.... +.. + ..
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~------~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL------QAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHHHHHhccccccHHH
Confidence 788899999999999887643 111 1122344455566677765 5888887776542 211 1 22
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC-CHhhH--
Q 047873 276 ITYTILLDGFCKEGDLESALDIRKEMIKRG--IEL--DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP-DDATY-- 348 (464)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-- 348 (464)
..+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.+.|...+..+....... ....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 334455667778899999999998876531 111 23345556667788999999999998885421011 11111
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 047873 349 ---TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA---VETYNALMNGLCKHGQLKNANMLLDTMLDL----GVVP-DDIT 417 (464)
Q Consensus 349 ---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~ 417 (464)
...+..+...|+.+.|...+........... ...+..+..++...|++++|...+++.... |..+ ...+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 1122444567899999998777554311111 112456677888999999999999888642 3222 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 047873 418 YNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 418 ~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
...+..++.+.|+.++|...+.+
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66777888999999999888776
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.6e-07 Score=73.60 Aligned_cols=302 Identities=14% Similarity=0.023 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|++.-..+.|+.+|-...++..|.+.|+++- ...|.. .--.--...+.+.+.+.+|+.|.
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~-------------------ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLG-------------------QLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4577788999999999999999999999986 333443 22223345566777888888887
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
..|.... ..-..+...-....-..+++..+..+.++....| +..+.+.......+.|+++.|.+-|+...+-+--.
T Consensus 102 ~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 102 FLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 7665431 1111222222223335667777766666654322 44444555555667788888888887776653223
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-------------CC---------------HHHHHHHHHHHHhcCC
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR-------------PD---------------VYTYSALINGLCKENR 214 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~---------------~~~~~~l~~~~~~~~~ 214 (464)
....|+..+ +..+.|+++.|++...++++.|++ || ...+|.-...+.+.|+
T Consensus 178 pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n 256 (459)
T KOG4340|consen 178 PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRN 256 (459)
T ss_pred chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhccc
Confidence 344555444 444667788888887777765532 11 1123334445678899
Q ss_pred hhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHH
Q 047873 215 LDDAELLLHEMCER-GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293 (464)
Q Consensus 215 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 293 (464)
++.|.+.+-+|.-+ ....|++|...+.-.-.. +++ .+..+-+.-+....+ -...||..++-.||++.-++.
T Consensus 257 ~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p------~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 257 YEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARP------TEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred HHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCc------cccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhH
Confidence 99999999888644 233466666554332222 222 344445555555544 345788889999999999999
Q ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047873 294 ALDIRKEMIKRGIE-LDNVAFTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 294 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
|-+++.+-...-.. .+...|+.+=....-.-..++|.+-+..+.
T Consensus 329 AADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 329 AADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88887653222111 133344433222223445666666555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-06 Score=79.39 Aligned_cols=358 Identities=12% Similarity=0.124 Sum_probs=172.2
Q ss_pred ChHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhcHHHHHHHHHcCCChhhHHHH
Q 047873 41 SSASLFASILETRGTH--LPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMRTNLPTVTLGF 116 (464)
Q Consensus 41 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 116 (464)
..+.+..+++.. +.+ .|....+..+.++...+-..+-+++++++.-....-+ ...-+.++... -.-+..+..+.
T Consensus 965 ~rRqLiDqVv~t-al~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~Y 1042 (1666)
T KOG0985|consen 965 YRRQLIDQVVQT-ALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEY 1042 (1666)
T ss_pred HHHHHHHHHHHh-cCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHH
Confidence 344455555544 221 2224445555666666666666666666654321111 11112222222 22233444444
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 047873 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196 (464)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 196 (464)
.+++-.... -.+...+...+-+++|..+|++.. .+....+.|+. ..++++.|.++-++..
T Consensus 1043 I~rLdnyDa-------~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n----- 1102 (1666)
T KOG0985|consen 1043 INRLDNYDA-------PDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN----- 1102 (1666)
T ss_pred HHHhccCCc-------hhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-----
Confidence 444332211 123334445555556666555432 12222333322 2234444444444332
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH
Q 047873 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276 (464)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 276 (464)
.+..|..+..+-.+.|.+.+|++-|-+.. |+..|..++....+.|.+ ++..+++.-..+....|.
T Consensus 1103 -~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~------edLv~yL~MaRkk~~E~~-- 1167 (1666)
T KOG0985|consen 1103 -EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKY------EDLVKYLLMARKKVREPY-- 1167 (1666)
T ss_pred -ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcH------HHHHHHHHHHHHhhcCcc--
Confidence 23345555555555555555555443321 445555555555555544 355555544444333332
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFC 356 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 356 (464)
.=+.++-+|++.++..+.++++ ..|+......+..-|...+.++.|.-+|.. ..-|..|...+.
T Consensus 1168 id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1168 IDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLV 1231 (1666)
T ss_pred chHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHH
Confidence 2234555555555555443332 123444555555555555555555544432 223455555666
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047873 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDK 436 (464)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 436 (464)
..|+++.|...-+++ .+..+|..+..+|...+.+.-| +|-..++.....-+.-++.-|...|-+++.+.
T Consensus 1232 ~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred HHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHH
Confidence 666666665544333 2455666666666655544433 22222333455566677777878888888877
Q ss_pred HHHh-cCCCC-chhHHHHhhccchhhhh
Q 047873 437 LQSE-KGLVS-DYACYTSLVSKSSKYRQ 462 (464)
Q Consensus 437 ~~~~-~~~~p-~~~~~~~ll~~~~~~~~ 462 (464)
+++. +|+.- ....|+.|--.|+|+..
T Consensus 1301 l~Ea~LGLERAHMgmfTELaiLYskykp 1328 (1666)
T KOG0985|consen 1301 LLEAGLGLERAHMGMFTELAILYSKYKP 1328 (1666)
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHhcCH
Confidence 7776 55533 34556666656666543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.5e-08 Score=82.62 Aligned_cols=186 Identities=8% Similarity=-0.116 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG----LVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 79 (464)
+..+..+..++..+...|++++|+..|++++. ..|++ .++..++..+.+.|++++|+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-------------------~~p~~~~~~~a~~~la~~~~~~~~~~~A~ 90 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALES-------------------RYPFSPYAEQAQLDLAYAYYKSGDYAEAI 90 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCCCchhHHHHHHHHHHHHHhcCCHHHHH
Confidence 45677888888889999999999999998873 23332 56777888889999999999
Q ss_pred HHHHHHHhCCCCCChh---cHHHHHHHHHcC--------CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 80 QCFRLLRKHYFRIPAR---GCRCLIDRMMRT--------NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
..|+++.+.... +.. ++..+..++... |+++.|.+.++.+.+..+. +...+..+......
T Consensus 91 ~~~~~~l~~~p~-~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~------- 161 (235)
T TIGR03302 91 AAADRFIRLHPN-HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYL------- 161 (235)
T ss_pred HHHHHHHHHCcC-CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHH-------
Confidence 999998876522 222 455555555544 6778888888888876543 33333222211110
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM--RPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
..... .....+...+.+.|++.+|...++...+... +.....+..+..++.+.|++++|..+++.+.
T Consensus 162 ---~~~~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 162 ---RNRLA--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred ---HHHHH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00000 0112456678899999999999999886521 2235678889999999999999999988887
Q ss_pred HC
Q 047873 227 ER 228 (464)
Q Consensus 227 ~~ 228 (464)
..
T Consensus 231 ~~ 232 (235)
T TIGR03302 231 AN 232 (235)
T ss_pred hh
Confidence 65
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.8e-08 Score=85.01 Aligned_cols=226 Identities=14% Similarity=0.003 Sum_probs=163.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
...-+.+.|+..+|.-.|+..+..+ |-+.++|..|+......++-..|+..+++.++..+. +..+...|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 3445778999999999999998887 557899999999999999999999999999998766 78888889989999999
Q ss_pred hhhHHHHHHHHhhCCCC--------CCcccHHHHHHHHHhcCChhHHHHHHHH-HhhCCCCCCHHHHHHHHHHHHhcCCh
Q 047873 145 IKDAQMVFDEFGKRGLH--------ATAVSFNTLINGHCKAKNLDEGFRLKSV-MEGSGMRPDVYTYSALINGLCKENRL 215 (464)
Q Consensus 145 ~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 215 (464)
-..|++.++.......+ ++...-.. ..+.....+....++|-. ....+..+|+.....|.-.|.-.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999887654210 00000000 011111223344444433 34445456777788888888888999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhCCChHHH
Q 047873 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD-KITYTILLDGFCKEGDLESA 294 (464)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 294 (464)
++|..+|+.++...+ -|...||.|...++...+. ++|+..|.+.++. .|+ +.+...|.-+|...|.+.+|
T Consensus 447 draiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s------~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRS------EEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCccc------HHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHH
Confidence 999999998887643 2677888888888877766 5888888888874 454 33444466678888888888
Q ss_pred HHHHHHHHH
Q 047873 295 LDIRKEMIK 303 (464)
Q Consensus 295 ~~~~~~~~~ 303 (464)
...|-..+.
T Consensus 518 ~~hlL~AL~ 526 (579)
T KOG1125|consen 518 VKHLLEALS 526 (579)
T ss_pred HHHHHHHHH
Confidence 887765543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.6e-06 Score=78.03 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=70.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 047873 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367 (464)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 367 (464)
.+..+.|.+.-++.. .+..|+.+..+-.+.|...+|.+-|-+. .|+..|..+++...+.|.+++-.+.
T Consensus 1088 i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 455666666554432 4467888888888888888887766442 3667788888888888888888888
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047873 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403 (464)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 403 (464)
+...++....|... ..++-+|++.++..+..+++
T Consensus 1156 L~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1156 LLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 77777765455443 36677777777777666554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-08 Score=84.91 Aligned_cols=254 Identities=15% Similarity=0.141 Sum_probs=138.7
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccc
Q 047873 173 GHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM 252 (464)
Q Consensus 173 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (464)
-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.+.. .|.......+. .|.....
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la-~y~~~~~--- 80 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLA-EYLSSPS--- 80 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHH-HHHCTST---
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHH-HHHhCcc---
Confidence 3344567776665554 222211222334455667777777765433 3332222 34444443333 3333211
Q ss_pred ccCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047873 253 AGDMKEARKIVDEMCTNGLNP-DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331 (464)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (464)
+-+.++.-++........+ +.........++...|+++.|++++... .+.......+..+.+.++++.|.+
T Consensus 81 --~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 81 --DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp --THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred --chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHH
Confidence 1134444444433332222 2222233334455667788877776542 255666677778888888888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 332 MLREMLKVGLKPDDATYTMVIDCFCK----NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
.++.|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++..
T Consensus 153 ~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 153 ELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888887642 33 344444444432 23578888888887665 55677788888888888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhc-CCCCchh
Q 047873 408 DLGVVPDDITYNILLEGHCKHGNP-EDFDKLQSEK-GLVSDYA 448 (464)
Q Consensus 408 ~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~-~~~p~~~ 448 (464)
+.+ +-++.++.-++-.....|+. +.+.+++.++ ...|+..
T Consensus 229 ~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 229 EKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred Hhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 543 23566666677777777777 5566777663 3455543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.3e-08 Score=82.52 Aligned_cols=251 Identities=18% Similarity=0.125 Sum_probs=127.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
+.-.|++..++.-.+ ........+......+.+++...|+++.++. ++.. +..|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~-~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKK-SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-T-TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---Hhcc-CCChhHHHHHHHHHHHhCccchHHH
Confidence 344677777776655 3222212223444556667777777664432 2222 2244555554444444333344444
Q ss_pred HHHHHHHhhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 149 QMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
..-+++........ +..........+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444333222121 2222222234455567777777766532 2455556667777777777777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 047873 228 RGLTPNDVIFTTLIDGHCK--NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRG 305 (464)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (464)
.+ .| .+...+..++.. .|. +.+++|..+|+++... ..++..+.+.+..++...|++++|..++.+....+
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~----e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGG----EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTT----TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCc----hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 42 23 233333333322 111 1124777777776543 34566666666667777777777777776666554
Q ss_pred CCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHC
Q 047873 306 IELDNVAFTALISGFCRGGKV-VEAERMLREMLKV 339 (464)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 339 (464)
.. ++.++..++.+....|+. +.+.+.+.++...
T Consensus 232 ~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 43 555555666666666665 4555566665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-07 Score=81.54 Aligned_cols=227 Identities=15% Similarity=0.114 Sum_probs=131.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047873 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214 (464)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (464)
....+.+.|++.+|.-.|+...+.+ +.+...|..|......+++-..|+..+++..+.. +-+......|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 4455778899999999999988775 5578899999999999999999999999998774 3356777778888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc------ccccCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHh
Q 047873 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI------DMAGDMKEARKIVDEMCT-NGLNPDKITYTILLDGFCK 287 (464)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 287 (464)
-.+|++.++.-+...++ |..+..+ ...++. .....+....++|-++.. .+..+|..+...|.-.|.-
T Consensus 369 q~~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPK-----YVHLVSA-GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HHHHHHHHHHHHHhCcc-----chhcccc-CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 88999999887665321 1111100 000000 001112233333333322 2222344444445555555
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHH
Q 047873 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD-DATYTMVIDCFCKNGDTKTGFR 366 (464)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~ 366 (464)
.|++++|.+.|+.++...+. |..+||.|...++...+.++|+..|.++++. .|+ +.+...|.-+|...|.+.+|.+
T Consensus 443 s~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred chHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 55555555555555554332 4445555555555555555555555555543 233 2233344444555555555555
Q ss_pred HHHHHH
Q 047873 367 LLKEMR 372 (464)
Q Consensus 367 ~~~~~~ 372 (464)
.|-.++
T Consensus 520 hlL~AL 525 (579)
T KOG1125|consen 520 HLLEAL 525 (579)
T ss_pred HHHHHH
Confidence 544433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-05 Score=66.17 Aligned_cols=299 Identities=13% Similarity=0.062 Sum_probs=217.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChh-hHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY-VFNVLMHK 138 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 138 (464)
.-...+...+...|++.+|+.-|....+.+ |.+-.++..-...|...|+..-|+.=+.++++.. ||-. +.-.-...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchh
Confidence 556678888999999999999999988875 3344556666678889999999999999999854 4533 22334556
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCccc----------------HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVS----------------FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTY 202 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 202 (464)
+.+.|.+++|..=|+.+.+.. |+..+ ....+..+...|+...|+.....+.+.. +.+...+
T Consensus 116 llK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 889999999999999998763 32211 1223344566899999999999998765 4588888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHh----H
Q 047873 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT----Y 278 (464)
Q Consensus 203 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~ 278 (464)
..-..+|...|++..|+.-++...+..-. +...+.-+-..+...|+. +.++...++..+. .||... |
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~------~~sL~~iRECLKl--dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDA------ENSLKEIRECLKL--DPDHKLCFPFY 263 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhH------HHHHHHHHHHHcc--CcchhhHHHHH
Confidence 88899999999999999888887765333 455555566666676654 5777777777764 454322 2
Q ss_pred HHH---------HHHHHhCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHh
Q 047873 279 TIL---------LDGFCKEGDLESALDIRKEMIKRGIELDNV---AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA 346 (464)
Q Consensus 279 ~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 346 (464)
..+ +......++|.++++-.+..++..+..... .+..+-.++...+++.+|+..-.+++... +.|..
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~ 342 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHH
Confidence 111 223345677888888888888775542222 34455566777889999999999988764 33478
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 347 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
++.--..+|.-..+++.|+.-|+.+.+.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 8888888998888899999999888875
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-06 Score=73.86 Aligned_cols=220 Identities=8% Similarity=-0.051 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN-LPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
.++..+-..+...++.++|+.+.+++.... |-+..+|.....++...| .+++++..++++++..++ +..+|+....+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 344444445566788899999999888875 445567777767777777 578899999998887765 66677766666
Q ss_pred HHhcCCh--hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---C
Q 047873 139 LCKEGKI--KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE---N 213 (464)
Q Consensus 139 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 213 (464)
+.+.|+. +++..+++.+.+.+ +.+..+|+...-++...|+++++++.++++++.+. .+..+|+....++.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc
Confidence 6666653 56788887877765 45677888888888888888999999988887763 3666777666555544 2
Q ss_pred Ch----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 047873 214 RL----DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287 (464)
Q Consensus 214 ~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (464)
.. ++.++...+++...+ -+...|+.+...+...+.. .+...++...+.+....+ +.+......++..|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~--l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEA--LVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcc--cccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 356666666666543 3667777777776653321 112235666666665543 2345566666666654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-07 Score=75.06 Aligned_cols=119 Identities=10% Similarity=0.029 Sum_probs=70.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCC--hhhH
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL-CKEGK--IKDA 148 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 148 (464)
.++.++++..+++..+.+ |.+...|..+...+...|++++|...|++..+..+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445556666666655554 445566666666666666666666666666665544 555555555543 44455 3666
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 149 QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
.+++++..+.+ +.+..++..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666553 234555666666666666666666666666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.7e-08 Score=73.51 Aligned_cols=93 Identities=19% Similarity=-0.026 Sum_probs=57.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (464)
.+...+...|++++|+..|+...... |.+...+..+..++...|++++|...|+++....+. +...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 44555566666666666666666554 345556666666666666666666666666665443 5566666666666666
Q ss_pred ChhhHHHHHHHHhhC
Q 047873 144 KIKDAQMVFDEFGKR 158 (464)
Q Consensus 144 ~~~~a~~~~~~~~~~ 158 (464)
++++|...|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666666554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.4e-07 Score=76.05 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=119.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChh---hH
Q 047873 59 GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP---ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY---VF 132 (464)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 132 (464)
...+..++..+.+.|++++|+..|+++.... |.+ ..++..+..++...|++++|...++++++..+. +.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHH
Confidence 3677788888999999999999999988765 222 246777888999999999999999999886654 222 45
Q ss_pred HHHHHHHHhc--------CChhhHHHHHHHHhhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 047873 133 NVLMHKLCKE--------GKIKDAQMVFDEFGKRGLHATA-VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203 (464)
Q Consensus 133 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (464)
..+..++... |+++.|.+.|+.+... .|+. ..+..+..... . .... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH--------HHHHH
Confidence 5555556554 6788888888888766 2332 22222211110 0 0000 01122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCcccc
Q 047873 204 ALINGLCKENRLDDAELLLHEMCERGL--TPNDVIFTTLIDGHCKNGRIDMA 253 (464)
Q Consensus 204 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 253 (464)
.+...+.+.|++.+|+..++...+... +.....+..+..++...|+++.+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 566789999999999999999987632 12356788999999999998643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-07 Score=71.96 Aligned_cols=170 Identities=11% Similarity=-0.030 Sum_probs=141.8
Q ss_pred cCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh
Q 047873 53 RGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131 (464)
Q Consensus 53 ~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (464)
....|++ .+ ..+...+...|+-+.+..+........ +.+.......+......|++..|+..+.+.....+ +|..+
T Consensus 60 ~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~ 136 (257)
T COG5010 60 VLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEA 136 (257)
T ss_pred HhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhh
Confidence 3566766 55 778888889999999999988765543 44555666788999999999999999999998765 49999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (464)
|+.+.-+|.+.|+++.|..-|.+..+.. .-+....+.+...+.-.|+++.|..++......+ .-|...-..+......
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGL 214 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhh
Confidence 9999999999999999999999988763 3466788999999999999999999999988765 3377777888999999
Q ss_pred cCChhHHHHHHHHHHH
Q 047873 212 ENRLDDAELLLHEMCE 227 (464)
Q Consensus 212 ~~~~~~a~~~~~~~~~ 227 (464)
.|++++|.++...-..
T Consensus 215 ~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 215 QGDFREAEDIAVQELL 230 (257)
T ss_pred cCChHHHHhhcccccc
Confidence 9999999998876543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-05 Score=74.32 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=66.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 047873 207 NGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286 (464)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (464)
.+......|.+|+.+++.+.++.. ...-|..+...|...|++ +.|.++|.+.- .++-.|.+|.
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df------e~ae~lf~e~~---------~~~dai~my~ 802 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF------EIAEELFTEAD---------LFKDAIDMYG 802 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH------HHHHHHHHhcc---------hhHHHHHHHh
Confidence 344556677777777777766532 233355556666666654 57777775431 2455677788
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 047873 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334 (464)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (464)
+.|+|..|.++-.+.. |+......|.+-..-.-++|++.+|.+++-
T Consensus 803 k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred ccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 8888888877765553 233344555555555566666666665553
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-06 Score=83.77 Aligned_cols=235 Identities=12% Similarity=0.043 Sum_probs=159.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
|.+..+|..|+..+...|++++|+++.+..+..++....-..+..++-....+.++.....++.......++.-...+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 46788999999999999999999999999886666555555555554443333444444466666666666633333333
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (464)
.+... ..+..++..++.+|-+.|+.++|..+|+++++..+. |+.+.|.+...|+.. ++++|.+++.+....-+ +
T Consensus 108 ~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~ 181 (906)
T PRK14720 108 KILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--K 181 (906)
T ss_pred HHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--h
Confidence 44443 345568888999999999999999999999999865 899999999999999 99999999988876521 1
Q ss_pred cccHHHHHH---HHH--hcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047873 164 AVSFNTLIN---GHC--KAKNLDEGFRLKSVMEGS-GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIF 237 (464)
Q Consensus 164 ~~~~~~l~~---~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 237 (464)
..-|+.+.. -++ ...+++.-..+.+.+... |...-..++..+-..|...++++++..++..+.+.... |....
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~ 260 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAR 260 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhH
Confidence 111111111 111 122333444444444433 22333445556667888889999999999999987543 55556
Q ss_pred HHHHHHHH
Q 047873 238 TTLIDGHC 245 (464)
Q Consensus 238 ~~l~~~~~ 245 (464)
.-++.+|.
T Consensus 261 ~~l~~~y~ 268 (906)
T PRK14720 261 EELIRFYK 268 (906)
T ss_pred HHHHHHHH
Confidence 66666665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.4e-06 Score=78.91 Aligned_cols=382 Identities=10% Similarity=-0.010 Sum_probs=227.0
Q ss_pred HHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-
Q 047873 49 ILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS- 126 (464)
Q Consensus 49 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 126 (464)
.+++....++- ..|..|...|...-+...|.+.|++.-+.+ +.+..+.......|.+..+++.|..+.-...+..+.
T Consensus 481 li~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~ 559 (1238)
T KOG1127|consen 481 LIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF 559 (1238)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH
Confidence 33333556665 889999999988889999999999998887 557888999999999999999999985544432211
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHH
Q 047873 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY-TYSAL 205 (464)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 205 (464)
.-...|..+.-.|.+.++...|..-|+...+.. +.|...|..+..+|.+.|.+..|.++|.+.... .|+.. .--..
T Consensus 560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~ 636 (1238)
T KOG1127|consen 560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKE 636 (1238)
T ss_pred HHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHH
Confidence 123344456667888899999999999888765 457888999999999999999999999988764 44432 22223
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCccc-ccCHHHHHHHHHHHHhCCCCCCHHhH
Q 047873 206 INGLCKENRLDDAELLLHEMCERG------LTPNDVIFTTLIDGHCKNGRIDM-AGDMKEARKIVDEMCTNGLNPDKITY 278 (464)
Q Consensus 206 ~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~ 278 (464)
.-.-+..|.+.+|...+....... ..--..++..+...+...|-... ..-++.+++.|.-...+....+...|
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~W 716 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW 716 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 334567889999998888775431 11112223222222222221110 11134444444444433322233333
Q ss_pred HHHHHHHHhCCC--hHH----HHHH-HHHHHHcCCC--------------------CCHHHHHHHHHHHhc-------c-
Q 047873 279 TILLDGFCKEGD--LES----ALDI-RKEMIKRGIE--------------------LDNVAFTALISGFCR-------G- 323 (464)
Q Consensus 279 ~~l~~~~~~~~~--~~~----a~~~-~~~~~~~~~~--------------------~~~~~~~~l~~~~~~-------~- 323 (464)
..+..+|.-.-. ++. ...+ +.+....+.. .+...|..++..|.+ .
T Consensus 717 i~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~ 796 (1238)
T KOG1127|consen 717 IVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETM 796 (1238)
T ss_pred HHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcc
Confidence 333222211000 000 0011 1111111111 122333333333322 1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047873 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403 (464)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 403 (464)
.+...|...+++..+.. ..+..+|+.|.-. ...|.+.-|...|-+-+.. .+....+|..+...+.+..+++-|...|
T Consensus 797 ~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 797 KDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred hhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHH
Confidence 22345667777766653 2344555555444 5567777777777665554 2335667777888888888999999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047873 404 DTMLDLGVVP-DDITYNILLEGHCKHGNPEDFDKLQS 439 (464)
Q Consensus 404 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 439 (464)
.+.+.. .| |...|......-...|+.-+...++.
T Consensus 874 ~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 874 SSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred Hhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 888753 44 55556555444556666666555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-07 Score=89.42 Aligned_cols=135 Identities=8% Similarity=-0.108 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
.+.++.++..|..+..+.|.+++|..+++.++ ...|+. .++..++..+.+.+++++|+..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~-------------------~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH-------------------QRFPDSSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH-------------------hhCCCcHHHHHHHHHHHHHhccHHHHHHH
Confidence 46778999999999999999999999999998 678888 8999999999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
+++..... |-+......+..++.+.|++++|..+|++++..++. +..++..+..++.+.|+.++|...|+.....
T Consensus 143 ~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 143 IELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999886 556777888888999999999999999999985543 6889999999999999999999999998765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.4e-07 Score=73.06 Aligned_cols=133 Identities=13% Similarity=-0.026 Sum_probs=116.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 56 HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
+.+......++....+.|++.+|+.+|.+..... |++.+.|+.+..+|.+.|+++.|..-|.+.++..+. ++...+.+
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNl 174 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNL 174 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhH
Confidence 3444777788999999999999999999998886 778999999999999999999999999999997765 77888889
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
.-.+.-.|+.+.|..++......+ .-+..+-+.+.......|+++.|.++...-.
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 989999999999999999987764 3477788889999999999999999876654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.3e-06 Score=76.00 Aligned_cols=170 Identities=17% Similarity=0.177 Sum_probs=75.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 171 INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 171 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
+.+....+.|.+|+.+++.+++.. .-..-|..+...|...|+++.|.++|-+.. .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 334444555555555555555432 222334455555555555555555554321 123344555555544
Q ss_pred ccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 047873 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330 (464)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 330 (464)
++|.++-++.. |+......|.+-..-.-..|++.+|.+++-.+.. |+ ..+.+|-+.|..+..+
T Consensus 808 ------~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 808 ------EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMI 870 (1636)
T ss_pred ------HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHH
Confidence 35554443332 2222333344434444455555555554432211 12 1234455555555555
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047873 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEM 371 (464)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 371 (464)
.+..+-.- ..-..|...+..-|-..|+...|..-|-+.
T Consensus 871 rlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 871 RLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 44443211 111233344444455555555555544333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.9e-06 Score=80.51 Aligned_cols=204 Identities=11% Similarity=0.051 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHhhC-CCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 047873 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHA---TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204 (464)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 204 (464)
...|-..|......++.+.|.+++++.... ++.- -...|.++++.-..-|.-+...++|+++.+. .-....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 444555555555555555555555554432 1000 0123444444444444444455555554432 112233444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC-CHHhHHHHHH
Q 047873 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP-DKITYTILLD 283 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 283 (464)
|...|.+.+.+++|.++|+.|.+. +......|...+..+.+.+.. +.|..++.+..+.-+.- ........+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~------~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEA------EAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHH------HHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 555555555555555555555543 112344455555554444432 34445555544431110 1122223333
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCC
Q 047873 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK 342 (464)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 342 (464)
.-.+.|+.+.+..+|+..+...++ -...|+.++..-.++|+.+.+..+|+++...++.
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 334455555555555555444322 3344555555555555555555555555544433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.7e-06 Score=80.24 Aligned_cols=239 Identities=15% Similarity=0.086 Sum_probs=140.3
Q ss_pred hHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC---hhcHHHHHHHHHcCCChhhHHHH
Q 047873 42 SASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH-YFRIP---ARGCRCLIDRMMRTNLPTVTLGF 116 (464)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~ 116 (464)
+..-|...+++ .|+. ..|...|....+.++.++|+++++++... +++-. ...|.+++.....-|.-+...++
T Consensus 1443 saeDferlvrs---sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAEDFERLVRS---SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CHHHHHHHHhc---CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 44445555543 3444 78888888888888888888888877654 21111 22455555555555666666667
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 047873 117 YLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR 196 (464)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 196 (464)
|+++.+.. ..-..|..|...|.+.+.+++|.++|+.|.++ +.....+|...+..+.+..+-+.|..++.+..+. -
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--l 1594 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--L 1594 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--c
Confidence 77766542 13345666777777777777777777777665 2245566777777777777767777777666654 2
Q ss_pred CC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC
Q 047873 197 PD---VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273 (464)
Q Consensus 197 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (464)
|. .......+..-.+.|+.+.+..+|+.....-++ -...|+..+..-.++++. ..+..+|++++..++.|
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~------~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDI------KYVRDLFERVIELKLSI 1667 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCH------HHHHHHHHHHHhcCCCh
Confidence 22 122233344445667777777777666655322 455666666666666554 46666677666665554
Q ss_pred CH--HhHHHHHHHHHhCCChHHHH
Q 047873 274 DK--ITYTILLDGFCKEGDLESAL 295 (464)
Q Consensus 274 ~~--~~~~~l~~~~~~~~~~~~a~ 295 (464)
.. ..|...+..--+.|+-..+.
T Consensus 1668 kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hHhHHHHHHHHHHHHhcCchhhHH
Confidence 32 23444444444444444333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-07 Score=69.88 Aligned_cols=123 Identities=5% Similarity=-0.264 Sum_probs=98.7
Q ss_pred HHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 79 IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..+|++..+.+ |+ .+......+...|++++|...|+.++...+. +...+..+..++...|++++|...|+.....
T Consensus 13 ~~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34566665553 22 3556778889999999999999999988765 8899999999999999999999999999987
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047873 159 GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING 208 (464)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (464)
+ +.+...+..+..++...|++++|...|+...+.. +.+...+.....+
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~ 135 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNA 135 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 5 5578889999999999999999999999998763 2244444444333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.2e-06 Score=79.32 Aligned_cols=224 Identities=12% Similarity=0.047 Sum_probs=122.8
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC------
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS------ 126 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 126 (464)
...|+. .+|..|+..|...|++++|.++.+...... |-....|..++..+.+.++..++..+ .+...-..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 556666 999999999999999999999999776663 33345555555567777776665544 22221110
Q ss_pred ------------CChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047873 127 ------------PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194 (464)
Q Consensus 127 ------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 194 (464)
-+..++..+..+|-+.|+.++|..+++++.+.+ +.|+.+.|.+...|... ++++|.+++.+....
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 011333444444444455555555555554443 23444444444444444 455554444443321
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC-CCCC
Q 047873 195 MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNP 273 (464)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 273 (464)
+...+++..+.+++.++....+ + +++.-..+.+.+... +..-
T Consensus 179 --------------~i~~kq~~~~~e~W~k~~~~~~--~---------------------d~d~f~~i~~ki~~~~~~~~ 221 (906)
T PRK14720 179 --------------FIKKKQYVGIEEIWSKLVHYNS--D---------------------DFDFFLRIERKVLGHREFTR 221 (906)
T ss_pred --------------HHhhhcchHHHHHHHHHHhcCc--c---------------------cchHHHHHHHHHHhhhccch
Confidence 3333344444444444444311 1 112333333333332 1122
Q ss_pred CHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 047873 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321 (464)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (464)
-..++..+-..|...++++++..++..+++.... +.....-++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 2344555666777788888888888888887655 5555666666655
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.3e-07 Score=81.81 Aligned_cols=225 Identities=12% Similarity=0.038 Sum_probs=174.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 047873 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQ 80 (464)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 80 (464)
|++||---.-..+..++..-|....|+.+|++.- .|..++..|...|+..+|..
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erle--------------------------mw~~vi~CY~~lg~~~kaee 445 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------------------------MWDPVILCYLLLGQHGKAEE 445 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------------------------HHHHHHHHHHHhcccchHHH
Confidence 4555655666778888999999999999999874 67788999999999999999
Q ss_pred HHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 81 CFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
+..+-.+. +|++..|..+++......-+++|.++.+.... .+-..+.....+.+++.++.+.|+.-.+.+
T Consensus 446 i~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n- 515 (777)
T KOG1128|consen 446 INRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN- 515 (777)
T ss_pred HHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-
Confidence 88877774 67888888888888777777888887776533 222333333445789999999998876654
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047873 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240 (464)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 240 (464)
+....+|-.+..+..+.++++.|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|..-
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENy 593 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENY 593 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeech
Confidence 4467788888888889999999999999887652 3356789999999999999999999999999886 3355666666
Q ss_pred HHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
+-...+.|.+ ++|++.+.++...
T Consensus 594 mlvsvdvge~------eda~~A~~rll~~ 616 (777)
T KOG1128|consen 594 MLVSVDVGEF------EDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhhcccH------HHHHHHHHHHHHh
Confidence 6666676665 6888888888653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-06 Score=78.76 Aligned_cols=223 Identities=13% Similarity=0.030 Sum_probs=142.6
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 54 GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
+.+|--..-..+...+...|-...|+.+|+++ ..|..++.+|+..|+..+|..+..+-++ -+|++..|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH
Confidence 44444466667777777778778888877754 3455567777777777777777776666 346777777
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 213 (464)
.+.......--+++|.++.+....+ .-..+.....+.++++++.+.++.-.+.. +....+|-....+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 7777766666677777777654332 11112222234677777777777665543 335556666777777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHH
Q 047873 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293 (464)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 293 (464)
++..|.+.|.......+ -+...|+.+-.+|.+.++. .+|...+++..+.+.. +-..|...+....+.|.+++
T Consensus 534 k~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k------~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKK------KRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred hhHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhh------HHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHH
Confidence 77777777777665432 2466677777777777665 4777777777766532 33344445555667777777
Q ss_pred HHHHHHHHHH
Q 047873 294 ALDIRKEMIK 303 (464)
Q Consensus 294 a~~~~~~~~~ 303 (464)
|++.+.++..
T Consensus 606 a~~A~~rll~ 615 (777)
T KOG1128|consen 606 AIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHH
Confidence 7777766654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-05 Score=63.58 Aligned_cols=140 Identities=20% Similarity=0.220 Sum_probs=68.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----c
Q 047873 283 DGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK----N 358 (464)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~ 358 (464)
..|+..+++++|++...... +......=+..+.+..+.+-|...+++|.+. .+..|.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34555555555555544311 1122222233344555555555555555542 234445545544433 2
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047873 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433 (464)
Q Consensus 359 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 433 (464)
+.+..|.-+|+++.++ ..|++.+.+....++...|++++|..+++..+... ..++.++.-++-.-...|+..+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChH
Confidence 2355555555555554 44555555555555555666666666665555432 2244444444444444444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-05 Score=77.57 Aligned_cols=230 Identities=9% Similarity=0.054 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhCCChHHHH-HH---HHHHHHhcC-CCChHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 047873 9 AYSTMVHFLVAHKMHSQAR-DL---LHLIVSKKG-MGSSASLFASILET-RGTHLPGLVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~-~~---~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
....+=..++.-|..++|- ++ .++++...+ .+....-+..+..- ..-+.+...+..|..+..+.|.+++|+.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l 109 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVW 109 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3444555666777776663 22 333333322 22222222222221 233444588888999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
+.+.+.. |-+..++..++..+.+.+++++|+..+++.+...+. +......+..++...|++++|..+|+++...+ +-
T Consensus 110 ~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~ 186 (694)
T PRK15179 110 RGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH-PE 186 (694)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CC
Confidence 9998885 445677888888999999999999999999987765 77888888889999999999999999998753 34
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHH
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG----LTPNDVIFT 238 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~ 238 (464)
+..++..+...+...|+.++|...|+...+.- .+....|+..+ +++..-..+++.+.-.+ .+....+..
T Consensus 187 ~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (694)
T PRK15179 187 FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLE 259 (694)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHH
Confidence 57888888889999999999999999887652 34445555433 23344455666654332 223344455
Q ss_pred HHHHHHHhcC
Q 047873 239 TLIDGHCKNG 248 (464)
Q Consensus 239 ~l~~~~~~~~ 248 (464)
.+|..+....
T Consensus 260 ~~~~~~~~~~ 269 (694)
T PRK15179 260 KMLQEIGRRR 269 (694)
T ss_pred HHHHHHhhcC
Confidence 5565555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.1e-07 Score=71.56 Aligned_cols=161 Identities=9% Similarity=0.035 Sum_probs=119.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+..|...|+++......+.+... .. .+...++.+++...++..++..+. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~---~~---------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP---LH---------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc---cc---------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 44688889988876555332211 00 122356778888888888887765 889999999999999999
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHH-HhcCC--hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGH-CKAKN--LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 222 (464)
+.|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +-+..++..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988874 44677777777764 56676 589999999998875 336778888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q 047873 223 HEMCERGLTPNDVIFTTLIDG 243 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~ 243 (464)
+++.+.. +|+..-+. +|..
T Consensus 168 ~~aL~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 168 QKVLDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHhhC-CCCccHHH-HHHH
Confidence 9998874 33444443 3343
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=66.66 Aligned_cols=110 Identities=15% Similarity=0.012 Sum_probs=83.0
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
..+|++ .....++..+.+.|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++...+.++. +...+
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~ 88 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPY 88 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHH
Confidence 445555 667777778888888888888888887765 446677788888888888888888888888776543 66777
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccH
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSF 167 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 167 (464)
..+..++...|+++.|.+.|+...+. .|+...+
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 77778888888888888888887775 3444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-05 Score=61.78 Aligned_cols=192 Identities=13% Similarity=0.081 Sum_probs=147.3
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcC-CCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcH
Q 047873 20 HKMHSQARDLLHLIVSKKGMGSSASLFASILETRG-THLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97 (464)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 97 (464)
..+.++..+++..++..... + ..++. .++..++-+....|+.+.|..+++.+...- |.+..+-
T Consensus 25 ~rnseevv~l~~~~~~~~k~--------------~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~ 89 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKS--------------GALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVG 89 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhh--------------cccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHH
Confidence 45667777777777643221 3 55566 788888888999999999999999988774 5455554
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 047873 98 RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177 (464)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (464)
..-...+-..|++++|.++|+.+++.++. |..++-.=+.+.-..|+.-+|++-+....+. +..|...|.-+...|...
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhH
Confidence 44444556679999999999999998754 7777777677777788888999988888776 466899999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCC
Q 047873 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN---RLDDAELLLHEMCERG 229 (464)
Q Consensus 178 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 229 (464)
|++++|.-.++++.-.. +.++..+..+...+.-.| +...+.++|.+..+..
T Consensus 168 ~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred hHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 99999999999998663 345555666666655544 4567889999988863
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00014 Score=68.26 Aligned_cols=367 Identities=13% Similarity=0.126 Sum_probs=202.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
+-..|..|.+.+.+-.+++-|.-.+..|-..+|. ..++...-.++ ..-..+...-...|..++|+.+|.+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga--------RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~c 826 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA--------RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQC 826 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH--------HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 4457888888899888888888888777644332 12222122222 33334444556789999999999987
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC------
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG------ 159 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 159 (464)
.+.+ .+=..|...|.+++|.++-+.--+.. -..+|......+...++.+.|++.|++.....
T Consensus 827 kR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 827 KRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred HHHH---------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 6653 23345667899999998876533321 23456666677777888888888877542110
Q ss_pred -------------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 160 -------------LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 160 -------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
-..|...|......+-..|+.+.|+.+|....+ |-.+++..|-.|+.++|-++-++-.
T Consensus 895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg 965 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG 965 (1416)
T ss_pred HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc
Confidence 012334444445555556666666666655542 3445556666677777766655432
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChH--------------
Q 047873 227 ERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE-------------- 292 (464)
Q Consensus 227 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------- 292 (464)
|......+.+.|...|++ .+|...|.+... +...|+.|-. ++++
T Consensus 966 ------d~AAcYhlaR~YEn~g~v------~~Av~FfTrAqa---------fsnAIRlcKE-nd~~d~L~nlal~s~~~d 1023 (1416)
T KOG3617|consen 966 ------DKAACYHLARMYENDGDV------VKAVKFFTRAQA---------FSNAIRLCKE-NDMKDRLANLALMSGGSD 1023 (1416)
T ss_pred ------cHHHHHHHHHHhhhhHHH------HHHHHHHHHHHH---------HHHHHHHHHh-cCHHHHHHHHHhhcCchh
Confidence 434444566666665544 577777766542 3333333222 2222
Q ss_pred --HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH--------HHHC--CCCCCHhhHHHHHHHHHhcCC
Q 047873 293 --SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE--------MLKV--GLKPDDATYTMVIDCFCKNGD 360 (464)
Q Consensus 293 --~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~ll~~~~~~~~ 360 (464)
.|-++|++. | .-+...+..|.+.|.+.+|+++-=+ +... ....|+...+.-...+....+
T Consensus 1024 ~v~aArYyEe~---g-----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1024 LVSAARYYEEL---G-----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred HHHHHHHHHHc---c-----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 122222221 1 1122233445666666666554221 1111 122355566666666677777
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 047873 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML-DLGVVPDD----ITYNILLEGHCKHGNPEDFD 435 (464)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p~~----~~~~~l~~~~~~~g~~~~a~ 435 (464)
+++|..++-..++ |...+..|... +..-..++-+.|. ...-.|+. ..+..+...|.++|.+..|-
T Consensus 1096 yekAV~lL~~ar~---------~~~AlqlC~~~-nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1096 YEKAVNLLCLARE---------FSGALQLCKNR-NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHhcC-CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 7777777665554 22333333332 2222333333343 11123333 35666777888999988877
Q ss_pred HHHHhcC
Q 047873 436 KLQSEKG 442 (464)
Q Consensus 436 ~~~~~~~ 442 (464)
+-+.+.|
T Consensus 1166 KKfTQAG 1172 (1416)
T KOG3617|consen 1166 KKFTQAG 1172 (1416)
T ss_pred HHHhhhh
Confidence 7665533
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-05 Score=63.37 Aligned_cols=262 Identities=16% Similarity=0.120 Sum_probs=143.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 047873 57 LPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136 (464)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 136 (464)
|++..|+.-= +.-.|++..++..-+...... .+...-..+.++|...|++.....-. .. +..|.......+.
T Consensus 8 ~~d~LF~iRn--~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a 79 (299)
T KOG3081|consen 8 PEDELFNIRN--YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLA 79 (299)
T ss_pred cchhHHHHHH--HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHH
Confidence 3344444322 334588877777666544331 23344445556666677665443221 11 1122333333333
Q ss_pred HHHHhcCChhhH-HHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 047873 137 HKLCKEGKIKDA-QMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL 215 (464)
Q Consensus 137 ~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 215 (464)
.....-++.+.- -++.+.+.......+......-...|++.+++++|++...... +......=..++.+..++
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHH
Confidence 222223333332 2334444433222222333334456778888888888776622 222333334556677778
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHH
Q 047873 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295 (464)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 295 (464)
+.|.+.+++|.+.. +..+.+.|..++.+.-.- .+.+.+|.-+|+++-+. .+|+..+.+.+..++...+++++|.
T Consensus 154 d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g--gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 154 DLAEKELKKMQQID---EDATLTQLAQAWVKLATG--GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc--chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHH
Confidence 88888888887652 556666666666543211 12356777888887664 4567777777777777778888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH-HHHHHHHHHHC
Q 047873 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVE-AERMLREMLKV 339 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 339 (464)
.+++..+..... ++.+...++..-...|...+ ..+.+.++...
T Consensus 228 ~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 228 SLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 888877777655 56666666655555554433 34455555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.3e-08 Score=52.52 Aligned_cols=32 Identities=53% Similarity=0.919 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
|+.||..||+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.5e-08 Score=52.48 Aligned_cols=32 Identities=47% Similarity=0.820 Sum_probs=17.2
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047873 375 GHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406 (464)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 406 (464)
|+.||..+|++++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.8e-06 Score=72.32 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=104.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+.-....+...|++++|+..++.+.... |-++..+......+.+.|+.++|.+.+++++...+. .....-.+..++.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all 385 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHH
Confidence 33344445567788888888888877663 445555566677788888888888888888876543 3666667778888
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 220 (464)
+.|++.+|.++++...... +.|+..|..|.++|...|+..++.....+.. ...|+++.|..
T Consensus 386 ~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~------------------~~~G~~~~A~~ 446 (484)
T COG4783 386 KGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY------------------ALAGRLEQAII 446 (484)
T ss_pred hcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH------------------HhCCCHHHHHH
Confidence 8888888888888877664 5577888888888888888887777666653 23466777777
Q ss_pred HHHHHHHC
Q 047873 221 LLHEMCER 228 (464)
Q Consensus 221 ~~~~~~~~ 228 (464)
.+....+.
T Consensus 447 ~l~~A~~~ 454 (484)
T COG4783 447 FLMRASQQ 454 (484)
T ss_pred HHHHHHHh
Confidence 66666554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=66.00 Aligned_cols=102 Identities=13% Similarity=0.012 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|.+......++..+...|++++|...|+.++. ..|++ ..+..+...+...|++++|..+|
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAA-------------------YDPYNSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------------------hCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999983 34444 89999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
+.....+ +.+...+..+...+...|++++|...++...+..+
T Consensus 75 ~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 75 ALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 9988876 55677888889999999999999999999998653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0013 Score=62.83 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=57.7
Q ss_pred HHHHHHHHHhccCChH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 047873 312 AFTALISGFCRGGKVV---EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388 (464)
Q Consensus 312 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 388 (464)
+.+.++..+.+.++.. +|+.+++...... +.|..+-..+++.|+-.|-+..|.++|..+.-..++.|...|- +..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 3456778888887654 5666666666654 4566677788889998999999999988876555554433322 222
Q ss_pred HHHhcCCHHHHHHHHHH
Q 047873 389 GLCKHGQLKNANMLLDT 405 (464)
Q Consensus 389 ~~~~~g~~~~a~~~~~~ 405 (464)
-+...|++..+...++.
T Consensus 516 ~~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNE 532 (932)
T ss_pred HHHhcccchhHHHHHHH
Confidence 33344444444444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0011 Score=59.62 Aligned_cols=361 Identities=12% Similarity=0.117 Sum_probs=180.6
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh------------------cCCCC----hHHHHHHHHHhcCCCCCh-
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSK------------------KGMGS----SASLFASILETRGTHLPG- 59 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~----~~~~~~~~~~~~~~~~~~- 59 (464)
||.+..+|..-|..-.+..+++...++|.+++.+ ++... -...|.-++...|+++-.
T Consensus 49 FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~ 128 (656)
T KOG1914|consen 49 FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSY 128 (656)
T ss_pred CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccc
Confidence 6888999999999999999999999999998731 11112 223444455556777666
Q ss_pred hhHHHHHHH---------HHhcCChhHHHHHHHHHHhCCCCCChhcHH------HHHHH-----H--HcCCChhhHHHHH
Q 047873 60 LVLDALMIV---------YVDLGFLDDAIQCFRLLRKHYFRIPARGCR------CLIDR-----M--MRTNLPTVTLGFY 117 (464)
Q Consensus 60 ~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------~l~~~-----~--~~~~~~~~a~~~~ 117 (464)
.+|+..+.. |..+.+.+..+++++++.......-...|+ .-+.. + -+...+..|.+++
T Consensus 129 siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~ 208 (656)
T KOG1914|consen 129 SIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVY 208 (656)
T ss_pred hhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 777776664 333445566666777766542211112221 11111 1 1234455566666
Q ss_pred HHHHh--cCCCCChh------h---------HHHHHHHHHhcCChh---------hHHHHHHHHh-hCCCCCCcccHHHH
Q 047873 118 LEILD--YGYSPSVY------V---------FNVLMHKLCKEGKIK---------DAQMVFDEFG-KRGLHATAVSFNTL 170 (464)
Q Consensus 118 ~~~~~--~~~~~~~~------~---------~~~l~~~~~~~~~~~---------~a~~~~~~~~-~~~~~~~~~~~~~l 170 (464)
+++.. .|...... | |..+|.. -+.+-.. ...-++++.. -.+..|+ +|---
T Consensus 209 qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~pe--iWy~~ 285 (656)
T KOG1914|consen 209 QELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPE--IWYDY 285 (656)
T ss_pred HHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHH--HHHHH
Confidence 65432 22211111 1 2222211 1111110 0111111111 1111111 11111
Q ss_pred -------HHHHHhcCC-------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCC
Q 047873 171 -------INGHCKAKN-------LDEGFRLKSVMEGSGMRPDVYTYSALINGLC---KENRLDDAELLLHEMCERGLTPN 233 (464)
Q Consensus 171 -------~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~ 233 (464)
-+.+...|+ -+++..+++..+..-..-+..+|..+...-- .-+..+.....++++......--
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~ 365 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL 365 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC
Confidence 112222232 2333444444433211222222222222111 11124445555555554321112
Q ss_pred HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 047873 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP-DKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVA 312 (464)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 312 (464)
..+|...++...+..- +..|..+|.+..+.+..+ ++.+.++++..+|. ++..-|.++|+--++.- .-++..
T Consensus 366 tLv~~~~mn~irR~eG------lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf-~d~p~y 437 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEG------LKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF-GDSPEY 437 (656)
T ss_pred ceehhHHHHHHHHhhh------HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc-CCChHH
Confidence 3345555554444332 357777777777766555 55566666665543 66777777777666552 224444
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDD--ATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 313 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
....+..+...++-..+..+|++....++.++. ..|..++..-+.-|+...+.++-+++...
T Consensus 438 v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 438 VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 555666666777777777777777766544443 56777777777777777777766665543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00038 Score=56.22 Aligned_cols=185 Identities=16% Similarity=0.143 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHhC---C-CCCCHH-hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 047873 256 MKEARKIVDEMCTN---G-LNPDKI-TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330 (464)
Q Consensus 256 ~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 330 (464)
.++..+++..+... | ..++.. .|..++-+....|+.+.|...++.+.++- +-+...-..-...+-..|++++|.
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHH
Confidence 35667776666542 2 334443 35556667778899999999999988875 224444444444566789999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047873 331 RMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG 410 (464)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 410 (464)
++++.+.+.+ +.|..++-.-+-..-..|..-+|++-+....+. +..|...|.-+...|...|+++.|.-.+++++-.
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~- 183 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI- 183 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-
Confidence 9999999876 556667766666667778877888888888876 6779999999999999999999999999998853
Q ss_pred CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHh-cCCCC
Q 047873 411 VVP-DDITYNILLEGHCKHG---NPEDFDKLQSE-KGLVS 445 (464)
Q Consensus 411 ~~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~-~~~~p 445 (464)
.| ++..+..+...+...| +.+-+.+++++ +.+.|
T Consensus 184 -~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 184 -QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred -CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 45 6666677777766555 44458888876 66666
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00028 Score=62.52 Aligned_cols=128 Identities=12% Similarity=-0.011 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC-cccHHHHHHHHH
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT-AVSFNTLINGHC 175 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 175 (464)
...........|++++|+..++.++..-+. |++.+......+.+.|+.++|.+.++++... .|+ ....-.+..++.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 333334455677888888888887776543 7777777778888888888888888888776 344 555666777888
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 176 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
+.|++.+|..+++...... +-|+..|..|.++|...|+..++.....+....
T Consensus 386 ~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 386 KGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred hcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 8888888888887777654 457778888888888888888877777666544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-05 Score=60.34 Aligned_cols=116 Identities=15% Similarity=0.027 Sum_probs=69.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC---hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCh
Q 047873 71 DLGFLDDAIQCFRLLRKHYFRIP---ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS--VYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 71 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 145 (464)
..++...+...++.+.... +.+ ..+...+...+...|++++|...|+.+......+. ......+..++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3677777777777776654 222 22334455666677777777777777776553322 22344456667777777
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSV 189 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 189 (464)
++|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777654332 22334455566666667777776666654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-05 Score=59.40 Aligned_cols=130 Identities=12% Similarity=0.047 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
..|..++..+ ..|+...+.+.++.+....+ +.+....+...+...+...|++++|...|+.+..
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~---------------~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYP---------------SSPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3455666655 48888888888888875322 1111125556677889999999999999999998
Q ss_pred CCCCCC--hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 047873 88 HYFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155 (464)
Q Consensus 88 ~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (464)
....++ ..+...+...+...|++++|+..++..... ...+..+.....++.+.|++++|...|+..
T Consensus 77 ~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 77 NAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 752222 235667888999999999999999774332 235667788899999999999999999864
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-05 Score=57.45 Aligned_cols=103 Identities=13% Similarity=0.014 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
.++..++..+...|++++|++.|..++...+ +.+....++..+..++.+.|++++|++.|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP---------------KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4566777777888888888888888774211 1111124566677778888888888888887776
Q ss_pred CCCC--CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 88 HYFR--IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 88 ~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
.... ....++..+..++.+.|++++|...++++.+..+
T Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 68 KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 5311 1234566666777777777888777777777654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.7e-05 Score=67.23 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 047873 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGL 390 (464)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (464)
.....++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+. .+-+...+..-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 344445555555666666666666666542 33 3334555555566666666666666654 222455555555666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 047873 391 CKHGQLKNANMLLDTMLDLGVVP-DDITYNILLEGHCKHGNPEDFDKLQSEK 441 (464)
Q Consensus 391 ~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 441 (464)
.+.++++.|+++.+++.+. .| +..+|..|..+|...|+++.|+..++.+
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666666666666653 34 4446666666666666766666666653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.4e-05 Score=67.38 Aligned_cols=124 Identities=18% Similarity=0.198 Sum_probs=90.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 047873 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK 357 (464)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 357 (464)
...++..+...++++.|..+++++.+.. | .....++..+...++..+|.+++.+..+.. +.+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 4556666667778888888888888774 2 344456777777778888888888887653 3456666666777888
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
.++++.|+.+.+++.+. .+-+..+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888875 22245578888888888888888888877653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-05 Score=59.61 Aligned_cols=100 Identities=8% Similarity=-0.137 Sum_probs=85.1
Q ss_pred CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 57 LPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 57 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
++. ...-.+...+...|++++|..+|+.+...+ +.+...|..|..++...|++++|+..|.......+. |+..+-.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHH
Confidence 444 566667777888999999999999988887 557778888999999999999999999999988865 88888889
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..++...|+.+.|.+.|+.....
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999987765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=56.45 Aligned_cols=94 Identities=13% Similarity=0.035 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
+|..++..+...|++++|++.+++++. ..|+. .++..+...+...|++++|.+.|+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE-------------------LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh-------------------cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666667777777777776662 22333 5566666666666777777777766655
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
.. +.+...+..+...+...|+++.|...+....+
T Consensus 63 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 63 LD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred CC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 54 22334555555566666666666666665554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.8e-05 Score=69.40 Aligned_cols=102 Identities=8% Similarity=-0.098 Sum_probs=83.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
...+..+...|++++|++.|++++ ...|+. ..+..+..+|.+.|++++|+..++++....
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al-------------------~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAI-------------------DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345667788999999999999998 445555 888889999999999999999999998886
Q ss_pred CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 90 FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
+.+..+|..++.++...|++++|+..|+++++..+. +..+..
T Consensus 67 -P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~-~~~~~~ 108 (356)
T PLN03088 67 -PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG-DSRFTK 108 (356)
T ss_pred -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 456778888899999999999999999999986644 444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.7e-05 Score=58.60 Aligned_cols=98 Identities=6% Similarity=-0.109 Sum_probs=86.1
Q ss_pred hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHH
Q 047873 94 ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173 (464)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (464)
-+....+...+...|++++|..+|+.+....+. +..-|..|..++-..|++++|+..|......+ +.++..+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 345566777788999999999999999987765 77788889999999999999999999998876 4578899999999
Q ss_pred HHhcCChhHHHHHHHHHhhC
Q 047873 174 HCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 174 ~~~~~~~~~a~~~~~~~~~~ 193 (464)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-05 Score=63.81 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=66.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
..=++-+.+.++|.+|+..|.+++ ...|++ ..|..-..+|.+.|.++.|++-.+.....+
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI-------------------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD 145 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAI-------------------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID 145 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH-------------------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 334455666777777777777777 566666 666667777777777777777777777765
Q ss_pred CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 90 FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
+....+|..|..+|...|++++|++.|++.++..
T Consensus 146 -p~yskay~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 146 -PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred -hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 3345677777777777777777777777777644
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0064 Score=58.27 Aligned_cols=225 Identities=13% Similarity=0.023 Sum_probs=141.9
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 96 (464)
...+++.+|++...+++.+. |+. .+...-.-.+.+.|+.++|..+++.....+. .|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~-------------------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~t 79 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH-------------------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLT 79 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC-------------------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHH
Confidence 35788888888888888543 332 2222222336789999999999988777653 37788
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (464)
...+-.+|...++.++|..+|++..... |+......+..+|.+.+++.+-.++--++-+. ++-+...+=.+++....
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHH
Confidence 8888899999999999999999998754 56777788888999988887654444333332 23344444455554443
Q ss_pred cC-C---------hhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHH
Q 047873 177 AK-N---------LDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLH-EMCERGLTPNDVIFTTLIDGH 244 (464)
Q Consensus 177 ~~-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~ 244 (464)
.. . ..-|.+..+.+.+.+ ...+..-...-...+-..|++++|..++. ...+.-...+...-+.-+..+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 21 1 223455555555443 11122222333344556788999998883 344433333444445566666
Q ss_pred HhcCCcccccCHHHHHHHHHHHHhCCC
Q 047873 245 CKNGRIDMAGDMKEARKIVDEMCTNGL 271 (464)
Q Consensus 245 ~~~~~~~~~~~~~~a~~~~~~~~~~~~ 271 (464)
...+++ .+..++-.++...+.
T Consensus 237 k~l~~w------~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 237 KLLNRW------QELFELSSRLLEKGN 257 (932)
T ss_pred HHhcCh------HHHHHHHHHHHHhCC
Confidence 666665 466777777666643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00034 Score=58.68 Aligned_cols=56 Identities=7% Similarity=-0.094 Sum_probs=32.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGS--GMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
+...|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|.++...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344566666776676666666654 12223344455666676777777666655544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.1e-06 Score=45.84 Aligned_cols=33 Identities=48% Similarity=0.935 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047873 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD 414 (464)
Q Consensus 382 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 414 (464)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577888888888888888888888887777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0001 Score=58.40 Aligned_cols=94 Identities=13% Similarity=0.003 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI--PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
..+..++..+...|++++|+..|++.......+ ...++..+...+...|++++|+..+++.++..+. ....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 555666666666777777777777765543111 1235666666777777777777777776664332 3444445555
Q ss_pred HHH-------hcCChhhHHHHHHH
Q 047873 138 KLC-------KEGKIKDAQMVFDE 154 (464)
Q Consensus 138 ~~~-------~~~~~~~a~~~~~~ 154 (464)
.+. ..|+++.|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 555 66676655444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.2e-06 Score=44.83 Aligned_cols=33 Identities=42% Similarity=0.601 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047873 381 ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP 413 (464)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 413 (464)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=4e-06 Score=57.47 Aligned_cols=82 Identities=12% Similarity=0.022 Sum_probs=51.0
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHH
Q 047873 20 HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC 99 (464)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 99 (464)
+|++++|+.+|++++... ...++...+..++.+|.+.|++++|+.++++ ...+ +.+......
T Consensus 2 ~~~y~~Ai~~~~k~~~~~----------------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l 63 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD----------------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYL 63 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH----------------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC----------------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHH
Confidence 577888888888877431 1011335556677888888888888888877 3222 122344445
Q ss_pred HHHHHHcCCChhhHHHHHHH
Q 047873 100 LIDRMMRTNLPTVTLGFYLE 119 (464)
Q Consensus 100 l~~~~~~~~~~~~a~~~~~~ 119 (464)
+..++.+.|++++|+..+++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhc
Confidence 56777778888888777765
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.9e-05 Score=64.49 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCR-GGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 355 (464)
+|..+++..-+.+..+.|..+|.++.+.+. .+..+|......-.+ .++.+.|..+|+...+. ++.+...+...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 566666666666667777777777764322 233444444444223 45555577777776654 344556666666666
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 356 CKNGDTKTGFRLLKEMRSDGHLPA---VETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.+.++.+.|..+|++.+.. +.++ ...|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777777777776665 2222 23666666666667777777777666665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=53.86 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC--ChhhHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFR--IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP--SVYVFNVLM 136 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 136 (464)
++..++..+.+.|++++|++.|+.+...... .....+..+..++.+.|+++.|...++.+....+.. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666777888888888888887765311 113456667777888888888888888877654331 244566677
Q ss_pred HHHHhcCChhhHHHHHHHHhhC
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.++...|++++|.+.++++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777788888888888777766
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.07 E-value=6e-05 Score=53.05 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (464)
+..++..+...|++++|+.+|+.+.+.. +.+...+..+...+...+++++|.+.++...+..+. +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 4456666777778888888887776654 333455666667777777777777777777665543 44566666667777
Q ss_pred cCChhhHHHHHHHHhh
Q 047873 142 EGKIKDAQMVFDEFGK 157 (464)
Q Consensus 142 ~~~~~~a~~~~~~~~~ 157 (464)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00012 Score=65.53 Aligned_cols=123 Identities=19% Similarity=0.247 Sum_probs=74.8
Q ss_pred CCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhH
Q 047873 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKR--GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATY 348 (464)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 348 (464)
.+.+......++..+....+.+.+..++.+.... ....-+.+..++++.|.+.|..+.++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555666666666666666666666666544 22222344556666666777667777666666666666677777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 047873 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393 (464)
Q Consensus 349 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (464)
+.|+..+.+.|++..|.++...|...+...++.++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777666666666655445555555555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00016 Score=57.45 Aligned_cols=112 Identities=10% Similarity=-0.054 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
+..++..+...|++++|+..|++.......++ ...+..++..+.+.|++++|...++++++..+. +...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 33344444444444444444444433221111 123344444444444444444444444443222 233333334444
Q ss_pred HhcCC--------------hhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 047873 140 CKEGK--------------IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178 (464)
Q Consensus 140 ~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (464)
...|+ +++|.+++++.... ++..+..++..+...|
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTG 165 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcC
Confidence 44333 45667777766654 2223555555554444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00027 Score=51.38 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=64.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
+.-+..++-..|+.++|+.+|++.+.. |...+. ..+..+...+...|++++|+.+|+....
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----------------gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAA-----------------GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666778888888888877743 222222 5566677777777888888888777765
Q ss_pred CCCC--CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 88 HYFR--IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 88 ~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
..+. .+......+..++...|+.++|+.++-..+. ++...|..-|..|.
T Consensus 67 ~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 67 EFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5211 1222333334456667777777777666554 23334544444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00011 Score=65.78 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=86.2
Q ss_pred cCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047873 254 GDMKEARKIVDEMCTN--GLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331 (464)
Q Consensus 254 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (464)
.+++.+..++.+.... ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++.++..+.+.|++..|..
T Consensus 80 ~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~ 159 (429)
T PF10037_consen 80 DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAK 159 (429)
T ss_pred hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHH
Confidence 3566777777777664 12122345679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 047873 332 MLREMLKVGLKPDDATYTMVIDCFCKN 358 (464)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ll~~~~~~ 358 (464)
+...|...+...+..|+...+.+|.+-
T Consensus 160 V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 160 VATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999998877667777777777777655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.8e-05 Score=51.88 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcC-ChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLG-FLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g-~~~~A~~~~~ 83 (464)
++..|..++..+...|++++|+..|.+++ ...|+. .+|..+..+|...| ++++|++.|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai-------------------~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI-------------------ELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHH-------------------HHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HcCCCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 56788888888999999999999998888 345666 88888888888888 6888888888
Q ss_pred HHHhC
Q 047873 84 LLRKH 88 (464)
Q Consensus 84 ~~~~~ 88 (464)
+..+.
T Consensus 63 ~al~l 67 (69)
T PF13414_consen 63 KALKL 67 (69)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 87665
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00074 Score=58.48 Aligned_cols=204 Identities=13% Similarity=0.140 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...|..-...|-..|++++|.+.|.++..- + ...+.+.+. ..|......|.+. ++++|++.+++.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~---------~----~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A 100 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADC---------Y----EKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA 100 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHH---------H----HHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHH---------H----HHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH
Confidence 345677777888888888888888877521 1 110111122 5555666666554 888888888776
Q ss_pred Hh----CCCCCC--hhcHHHHHHHHHcC-CChhhHHHHHHHHHhc----CCC-CChhhHHHHHHHHHhcCChhhHHHHHH
Q 047873 86 RK----HYFRIP--ARGCRCLIDRMMRT-NLPTVTLGFYLEILDY----GYS-PSVYVFNVLMHKLCKEGKIKDAQMVFD 153 (464)
Q Consensus 86 ~~----~~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 153 (464)
.. .| .++ ...+..+...|... |++++|++.|++..+. +.. .-...+..+...+.+.|++++|.++|+
T Consensus 101 ~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e 179 (282)
T PF14938_consen 101 IEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYE 179 (282)
T ss_dssp HHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 53 23 222 34566777777777 8888888888887653 210 113345667778888889999999988
Q ss_pred HHhhCCCCCCc-----c-cHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCC--HHHHHHHHHHHHhcCC---hhHHHH
Q 047873 154 EFGKRGLHATA-----V-SFNTLINGHCKAKNLDEGFRLKSVMEGSG--MRPD--VYTYSALINGLCKENR---LDDAEL 220 (464)
Q Consensus 154 ~~~~~~~~~~~-----~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~---~~~a~~ 220 (464)
++.......+. . .+-..+-++...||...|...++...... +..+ ......|+.++- .|+ ++.+..
T Consensus 180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~f~~av~ 258 (282)
T PF14938_consen 180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEAFTEAVA 258 (282)
T ss_dssp HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCCHHHHCH
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 87664322111 1 12233445566788888888888877542 2211 233444555543 333 444444
Q ss_pred HHHHHH
Q 047873 221 LLHEMC 226 (464)
Q Consensus 221 ~~~~~~ 226 (464)
-|+.+.
T Consensus 259 ~~d~~~ 264 (282)
T PF14938_consen 259 EYDSIS 264 (282)
T ss_dssp HHTTSS
T ss_pred HHcccC
Confidence 444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00013 Score=60.79 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=84.6
Q ss_pred CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC---CChhhHHHHHHHHHhcCCCCChhh
Q 047873 56 HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT---NLPTVTLGFYLEILDYGYSPSVYV 131 (464)
Q Consensus 56 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~ 131 (464)
+|++ ..|..|...|.+.|+++.|...|.+..+.. +.++..+..+..++... ....++..+++++++..+. |+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 4444 888888888888888888888888888875 55667777776665543 2345778888888887665 7778
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHH
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLING 173 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (464)
...|...+...|++.+|...++.|.+.. |....+..++..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 8888888888888988888888888763 344455555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.3e-05 Score=49.31 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=42.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
++..+.+.|++++|++.|++++ ...|+. .++..+..++...|++++|+.+|+.+.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l-------------------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQAL-------------------KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHH-------------------CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-------------------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566777888888888888887 445655 777888888888888888888888776653
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.2e-05 Score=44.29 Aligned_cols=33 Identities=52% Similarity=0.977 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047873 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPN 233 (464)
Q Consensus 201 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 233 (464)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666665554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00014 Score=62.56 Aligned_cols=131 Identities=15% Similarity=0.057 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHH-HHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR-MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
.+|..+++...+.+..+.|+.+|.+..+.+ ..+...|...... +.-.++.+.|..+|+..++.-. .+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-SDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-T-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 468888888888889999999999998553 3455566655555 3336777779999999887643 478888888899
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHAT---AVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
+...|+.+.|..+|++.... +.++ ...|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998765 2222 236777788777888888888888777654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0056 Score=53.34 Aligned_cols=88 Identities=14% Similarity=0.067 Sum_probs=50.2
Q ss_pred HHhCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCC
Q 047873 285 FCKEGDLESALDIRKEMIKRG---IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD-DATYTMVIDCFCKNGD 360 (464)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~ 360 (464)
..+.|++..|.+.+.+.+..+ ..++...|.....+..+.|+..+|+.--+...+.+ +. ...|..-..++.-.++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHH
Confidence 346677777777777666542 23445556666666667777777776666665531 11 1122223334455566
Q ss_pred hHHHHHHHHHHHhC
Q 047873 361 TKTGFRLLKEMRSD 374 (464)
Q Consensus 361 ~~~a~~~~~~~~~~ 374 (464)
|++|.+-|+...+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777766666654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0002 Score=64.02 Aligned_cols=91 Identities=7% Similarity=-0.171 Sum_probs=72.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+..+...|++++|++.|++..+.+ +.+...+..+..++...|++++|+..+++++...+. +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 445667788888888888888876 446677778888888888888888888888887654 677788888888888888
Q ss_pred hhHHHHHHHHhhC
Q 047873 146 KDAQMVFDEFGKR 158 (464)
Q Consensus 146 ~~a~~~~~~~~~~ 158 (464)
++|...|+...+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888775
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0004 Score=55.14 Aligned_cols=116 Identities=15% Similarity=0.035 Sum_probs=89.6
Q ss_pred hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHH
Q 047873 94 ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS--VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171 (464)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (464)
...+..++..+...|++++|...|+++++....+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 45677788888999999999999999987654432 4678889999999999999999999988763 33456677777
Q ss_pred HHHHhcCC--------------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047873 172 NGHCKAKN--------------LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214 (464)
Q Consensus 172 ~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (464)
..+...|+ +++|.+.++..... .|+ .|..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cch--hHHHHHHHHHhcCc
Confidence 78877776 68899999998864 233 36666766666554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.8e-05 Score=43.22 Aligned_cols=32 Identities=41% Similarity=0.587 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047873 201 TYSALINGLCKENRLDDAELLLHEMCERGLTP 232 (464)
Q Consensus 201 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 232 (464)
+|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0028 Score=51.64 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=104.9
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHH----
Q 047873 96 GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI---- 171 (464)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 171 (464)
...+++..+...|.+.-..+++.++++..++.++.....|++.-...||.+.|...|++..+..-..|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3456677777889999999999999998878899999999999999999999999999887654345555555443
Q ss_pred -HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 172 -NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 172 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
..|.-.+++.+|...+.++...+ +.++...|.-.-+..-.|+...|++.++.+.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34556788999999999888764 3456666655555556789999999999999873
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0011 Score=55.35 Aligned_cols=117 Identities=12% Similarity=0.004 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhhHHHH
Q 047873 75 LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG---KIKDAQMV 151 (464)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 151 (464)
.++...-++.-.+.+ |-|.+.|..|...|...|++..|...|.+..+...+ ++..+..+..++.... ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 344444445555555 668899999999999999999999999999987654 7888877777765543 45678999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG 194 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 194 (464)
|+++...+ +.+..+...+...+...|++.+|...|+.|.+..
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99999875 4467777888889999999999999999999874
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=60.80 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=76.8
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHH
Q 047873 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLP-AVETYNALMNGLCKHGQLK 397 (464)
Q Consensus 319 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 397 (464)
-+.+.+++.+|+..|.++++.. +-|...|..-..+|.+.|.++.|++-.+..+.. .| ...+|..|..+|...|++.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 3566788888888888888875 456777788888888888888888888887774 23 3567888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047873 398 NANMLLDTMLDLGVVPDDITYNILLEG 424 (464)
Q Consensus 398 ~a~~~~~~~~~~~~~p~~~~~~~l~~~ 424 (464)
+|++.|++.++ +.|+..+|..=+..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 88888888875 57777666554443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00027 Score=49.36 Aligned_cols=78 Identities=29% Similarity=0.441 Sum_probs=53.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047873 350 MVIDCFCKNGDTKTGFRLLKEMRSDGH-LPAVETYNALMNGLCKHG--------QLKNANMLLDTMLDLGVVPDDITYNI 420 (464)
Q Consensus 350 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~ 420 (464)
..+..+...+++.....+|+.++..|+ .|+..+|+.++.+..+.. +.-+.+.+++.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 677777777777666532 23456677778887778888888888
Q ss_pred HHHHHHh
Q 047873 421 LLEGHCK 427 (464)
Q Consensus 421 l~~~~~~ 427 (464)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8777654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0043 Score=47.77 Aligned_cols=134 Identities=10% Similarity=0.010 Sum_probs=98.8
Q ss_pred CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCCcccHHH
Q 047873 91 RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL-HATAVSFNT 169 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 169 (464)
.|+..-...+...+.+.|+..+|...|++...--...|......+.++....+++..|...++.+-+.+. ..++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4667777788888888999999999999888755556777888888888889999999999888876521 123455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
+.+.+...|.+..|...|+..... -|+...-......+.+.|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 778888889999999999988876 4555554445556677787776655444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.9e-05 Score=54.06 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=47.5
Q ss_pred cCChhHHHHHHHHHHhCCCC-CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 72 LGFLDDAIQCFRLLRKHYFR-IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
.|++++|+.+|+++...... ++...+..+..++.+.|++++|..++++ .+.+.. +......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777666421 1333445566777777777777777766 332222 33444455666777777777777
Q ss_pred HHHH
Q 047873 151 VFDE 154 (464)
Q Consensus 151 ~~~~ 154 (464)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00058 Score=63.92 Aligned_cols=135 Identities=10% Similarity=-0.058 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHHHh--CC---ChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCC--
Q 047873 3 FRLTLHAYSTMVHFLVA--HK---MHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGF-- 74 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~-- 74 (464)
.+.+..+|...+++... .+ .+.+|+.+|++++ ...|+. .++..+..++.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai-------------------~ldP~~a~a~A~la~~~~~~~~~~ 393 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL-------------------KSEPDFTYAQAEKALADIVRHSQQ 393 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------------------HhCCCcHHHHHHHHHHHHHHHhcC
Confidence 46778888888887654 22 3779999999998 567777 667666555433211
Q ss_pred ------hhHHHHHHHHHHhC-CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh
Q 047873 75 ------LDDAIQCFRLLRKH-YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD 147 (464)
Q Consensus 75 ------~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (464)
...+.+..++.... ..+.++.++..+.......|++++|...+++++..+ |+...|..+...+...|+.++
T Consensus 394 ~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 394 PLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred CccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHH
Confidence 12222222222221 112233444444444444555555555555555544 344555555555555555555
Q ss_pred HHHHHHHHhhC
Q 047873 148 AQMVFDEFGKR 158 (464)
Q Consensus 148 a~~~~~~~~~~ 158 (464)
|...+++....
T Consensus 472 A~~~~~~A~~L 482 (517)
T PRK10153 472 AADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHhc
Confidence 55555555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0013 Score=61.63 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
..|..+.......|++++|...++++...+ |+...|..+...+...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444344444455555555555555432 3444455555555555555555555555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0012 Score=54.02 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
.+...+...+..+...|++.+|++.|+.+..... +.+--..+...++.++.+.|+++.|+..|++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P---------------~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~ 67 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYP---------------NSPYAPQAQLMLAYAYYKQGDYEEAIAAYER 67 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T---------------TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777777888899999999999999885422 1111226667788889999999999999999
Q ss_pred HHhCC
Q 047873 85 LRKHY 89 (464)
Q Consensus 85 ~~~~~ 89 (464)
+.+..
T Consensus 68 fi~~y 72 (203)
T PF13525_consen 68 FIKLY 72 (203)
T ss_dssp HHHH-
T ss_pred HHHHC
Confidence 88764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00041 Score=54.88 Aligned_cols=115 Identities=9% Similarity=-0.082 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhC-CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhhHHHH
Q 047873 75 LDDAIQCFRLLRKH-YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP--SVYVFNVLMHKLCKEGKIKDAQMV 151 (464)
Q Consensus 75 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 151 (464)
+..+...+..+.+. +..-....+..++..+...|++++|+..|++.+.....+ ...++..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555555322 212234566778888889999999999999998764332 245788899999999999999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHH-------hcCChhHHHHHHHHH
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHC-------KAKNLDEGFRLKSVM 190 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~ 190 (464)
++...... +....++..+...+. ..|+++.|...+++.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99988763 334455666666666 788888666665543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.019 Score=50.83 Aligned_cols=148 Identities=15% Similarity=0.187 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 047873 311 VAFTALISGFCRGGKVVEAERMLREMLKVG-LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNG 389 (464)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (464)
..|+..++.-.+..-++.|..+|-++.+.+ +.++...+++++..++ .|+..-|.++|+.-... ++.+..--+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 456777777788888999999999999887 5677788888888765 67788899999876664 33333444677788
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhHHHHhhccchhhh
Q 047873 390 LCKHGQLKNANMLLDTMLDLGVVPD--DITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYACYTSLVSKSSKYR 461 (464)
Q Consensus 390 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~~~~ll~~~~~~~ 461 (464)
+.+.++-..|..+|+..+.. +..+ ...|..++.--..-|+...+..+-+. ..+.|..-+.....+.++-.+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 88999999999999976643 3333 66788888888888999887776555 344555544444444444433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00038 Score=48.65 Aligned_cols=77 Identities=16% Similarity=0.305 Sum_probs=52.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHCCCCCCHhhHHH
Q 047873 280 ILLDGFCKEGDLESALDIRKEMIKRGI-ELDNVAFTALISGFCRGG--------KVVEAERMLREMLKVGLKPDDATYTM 350 (464)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (464)
..|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555666888888888888888888 778888888887766542 23345566666666666666666666
Q ss_pred HHHHHH
Q 047873 351 VIDCFC 356 (464)
Q Consensus 351 ll~~~~ 356 (464)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 666554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.5e-05 Score=49.73 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=39.7
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
...|++++|++.|++++. ..|++ .++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~-------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ-------------------RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH-------------------HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHH-------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467888888888888874 23444 777788888888888888888888877764
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0086 Score=46.21 Aligned_cols=165 Identities=15% Similarity=0.077 Sum_probs=110.0
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 047873 99 CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178 (464)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (464)
.+.....+.=++++...-..+-.. ..|++.....|..++.+.|+..+|...|.+...--+..|....-.+.++....+
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 344444445555555444333333 336777777888889999999999999988876545557777788888888899
Q ss_pred ChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHH
Q 047873 179 NLDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMK 257 (464)
Q Consensus 179 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (464)
++..|...++.+.+... ..++.+...+.+.+...|.+..|...|+.....-..|....+ ....+.+.|+.+ .+-.
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~--ea~a 214 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLR--EANA 214 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchh--HHHH
Confidence 99999999988876531 112334556778888899999999999988876333333333 233344444332 1235
Q ss_pred HHHHHHHHHHhC
Q 047873 258 EARKIVDEMCTN 269 (464)
Q Consensus 258 ~a~~~~~~~~~~ 269 (464)
+..++++.+.+.
T Consensus 215 q~~~v~d~~~r~ 226 (251)
T COG4700 215 QYVAVVDTAKRS 226 (251)
T ss_pred HHHHHHHHHHhc
Confidence 777888888764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.02 Score=50.13 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=81.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 047873 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391 (464)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (464)
+.+..+.-+...|+...|..+-++.. -|+..-|...+.+++..++|++-.++-.. . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45556677778888888888866653 47888899999999999999887765432 1 24567888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 392 KHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 392 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
+.|...+|..++.++ + + ..-+..|.+.|++.+|.+...+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888772 2 2 3456677888888888777554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.035 Score=51.99 Aligned_cols=188 Identities=9% Similarity=-0.013 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.|-++.|..|.......-.++.|...|-++-.-.|..-.. .+. .+. ....-.+=+.+| -|++++|.++|-
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vk----rl~---~i~-s~~~q~aei~~~--~g~feeaek~yl 758 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVK----RLR---TIH-SKEQQRAEISAF--YGEFEEAEKLYL 758 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHH----Hhh---hhh-hHHHHhHhHhhh--hcchhHhhhhhh
Confidence 4567788888887777777888888777764333321111 110 011 011112222233 489999999988
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
.+.++++ .+....+.|++-+..++++.--... -..-..+|+.+...++....|++|.+.|..-..
T Consensus 759 d~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----- 824 (1189)
T KOG2041|consen 759 DADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----- 824 (1189)
T ss_pred ccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 7776642 3556667788888877765422110 011245778888888888888888888765321
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 224 (464)
....+.++.+..++++...+.+.+. .+....-.+..++.+.|.-++|.+.|-+
T Consensus 825 ----~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 ----TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred ----hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1234666666666666665555543 3444556667777777777777666544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0066 Score=51.00 Aligned_cols=179 Identities=9% Similarity=-0.021 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc---HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG---CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
+-.....+...|++++|++.|+.+....+. +... ...++.++.+.++++.|...+++.++..+.....-+...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 334455567789999999999999887522 2222 355677888999999999999999887655333333333333
Q ss_pred HHh--cC---------------Ch---hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 047873 139 LCK--EG---------------KI---KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD 198 (464)
Q Consensus 139 ~~~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 198 (464)
.+. .+ +. ..|+..|+.+.+. |-...-..+|...+..+... .-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~---la 175 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR---LA 175 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH---HH
Confidence 321 11 11 2333444444443 22223344454444444321 01
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHH
Q 047873 199 VYTYSALINGLCKENRLDDAELLLHEMCER--GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEM 266 (464)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~ 266 (464)
. .--.+.+.|.+.|.+..|..-++.+.+. +.+........+..+|...|.. ++|..+...+
T Consensus 176 ~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~------~~a~~~~~~l 238 (243)
T PRK10866 176 K-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN------AQADKVAKII 238 (243)
T ss_pred H-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh------HHHHHHHHHH
Confidence 1 1124677899999999999999999876 2233455566788889888876 4666665544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.8e-05 Score=40.43 Aligned_cols=29 Identities=45% Similarity=0.816 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047873 382 TYNALMNGLCKHGQLKNANMLLDTMLDLG 410 (464)
Q Consensus 382 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 410 (464)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.041 Score=51.97 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 047873 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388 (464)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 388 (464)
...+.+..+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-.... .+.-|.-...
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 33455666677788899999998877765 4788899999999999999987666543332 2455777889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 389 GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 389 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
+|.+.|+.++|.+++-+.. +.. -...+|.+.|++.+|.++.-+
T Consensus 753 ~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999987653 122 467788889999998877544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00048 Score=58.21 Aligned_cols=65 Identities=17% Similarity=-0.003 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYF--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
.++..++..|...|++++|+..|+.+..... +....++..++.++...|+.++|..+|+.+++..
T Consensus 181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455555556666666666666666554321 1123334444445555555555555555555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00014 Score=46.80 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=42.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
++..+.+.|++++|+..|+.+.+.. |-+...+..+..++...|++++|...|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556777788888888888877775 4456777777777777888888888777777654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.005 Score=53.63 Aligned_cols=279 Identities=12% Similarity=0.009 Sum_probs=133.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047873 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214 (464)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (464)
....+.+..++..|+..+....+.. +.+..-|..-+..+...++++++.--.+.-.+.. .-........-+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 3444555555556666655555543 2233444444455555555555554444333321 1112233334444444444
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCC-CCCHHhHHHH-HHHHHhCCChH
Q 047873 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL-NPDKITYTIL-LDGFCKEGDLE 292 (464)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~ 292 (464)
..+|.+.++.- ..+ ....++..++....... +|...++..+ ..++.-.|+.+
T Consensus 133 ~i~A~~~~~~~---------~~~-----------------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 133 LIEAEEKLKSK---------QAY-----------------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred HHHHHHHhhhh---------hhh-----------------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 44444444311 000 00122333333322211 2333344333 23445567777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHH-------------HHHHHHhcC
Q 047873 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTM-------------VIDCFCKNG 359 (464)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------ll~~~~~~~ 359 (464)
+|..+--.+++.+.. +....-.-..++--.++.+.+...|++.+..+ |+...... =..-..+.|
T Consensus 187 ~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 187 EAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred hHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 777766666655322 21111111222334566677777777766643 44322111 122234667
Q ss_pred ChHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 047873 360 DTKTGFRLLKEMRSD---GHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD-DITYNILLEGHCKHGNPEDFD 435 (464)
Q Consensus 360 ~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 435 (464)
.+..|.+.|.+.+.. +..|+...|........+.|+..+|+.-.++..+. .|. ...+..-..++...++|++|.
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777664 33445556666666667777777777777766532 211 112222223445667777777
Q ss_pred HHHHh-cCCCCc
Q 047873 436 KLQSE-KGLVSD 446 (464)
Q Consensus 436 ~~~~~-~~~~p~ 446 (464)
+-+++ +....+
T Consensus 342 ~d~~~a~q~~~s 353 (486)
T KOG0550|consen 342 EDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHhhccc
Confidence 77665 333333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0015 Score=56.60 Aligned_cols=204 Identities=10% Similarity=0.087 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-hhcHHHHHHHHHcCCChhhHHHHHHHHHhc----CCC-CCh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKH----YFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDY----GYS-PSV 129 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 129 (464)
..|......|...|++++|.+.|.+.... +-+.. ...|......+.+. ++++|++.+++.... |-. .-.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34555566788888888888888876432 21111 23455555555444 888888888887642 211 113
Q ss_pred hhHHHHHHHHHhc-CChhhHHHHHHHHhhC----CCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-----CC
Q 047873 130 YVFNVLMHKLCKE-GKIKDAQMVFDEFGKR----GLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR-----PD 198 (464)
Q Consensus 130 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~ 198 (464)
..+..+...|... |+++.|.+.|++.... +-+. -...+..+...+.+.|++++|.++|++....-.. .+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 4566777888888 8999999999887543 2110 1234667788899999999999999998764322 12
Q ss_pred HH-HHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 199 VY-TYSALINGLCKENRLDDAELLLHEMCERG--LTPN--DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 199 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
.. .+...+-++...||+..|.+.+++..... +..+ ......|+.++-. ++. ..+..++.-|+.+.+
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~-~D~---e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE-GDV---EAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT-T-C---CCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh-CCH---HHHHHHHHHHcccCc
Confidence 22 22334446777899999999999987652 2222 3334455665554 333 356677777766643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0039 Score=45.38 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 319 GFCRGGKVVEAERMLREMLKVGLKPD--DATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 319 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555443322 12344444455555555555555555544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.4e-05 Score=39.91 Aligned_cols=29 Identities=45% Similarity=0.820 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 201 TYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 201 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0023 Score=55.58 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHH----CC-CCCCH
Q 047873 276 ITYTILLDGFCKEGDLESALDIRKEMIK----RGIE-LDNVAFTALISGFCRGGKVVEAERMLREMLK----VG-LKPDD 345 (464)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~ 345 (464)
..|..+...|.-.|+++.|+...+.-+. .|-. .....+..+.+++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566666677777888888776554322 1211 1234677778888888888888888876543 22 11234
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSD-----GHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
.+.-+|...|.-..++++|+..+.+-..- ...-....+.+|..+|...|..+.|+.+.+.-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566777777777888888877653221 112245678888888888888888887776654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0023 Score=48.70 Aligned_cols=103 Identities=16% Similarity=-0.020 Sum_probs=81.6
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
|++++. ...-....-+...|++++|..+|..+...+ +.+..-+..|..++...+++++|+..|......+.. |+...
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~ 108 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPV 108 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCcc
Confidence 666666 555555666678899999999999988876 456677788888888899999999999988776654 66666
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
-....++...|+.+.|...|+....+
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 67788999999999999999888764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0045 Score=53.89 Aligned_cols=202 Identities=14% Similarity=-0.001 Sum_probs=108.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH--HHh
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL--LRK 87 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~ 87 (464)
...-+.-+.+.|+.+....+|+.+++-+.. + ..--..+|..|.++|.-.+++++|++.-.. ...
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTe--D------------l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla 85 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTE--D------------LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA 85 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcch--H------------HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH
Confidence 344566788999999999999999853110 0 001126788899999999999999997422 111
Q ss_pred C--CC-CCChhcHHHHHHHHHcCCChhhHHHHHHHHHh----cCCC-CChhhHHHHHHHHHhcCCh--------------
Q 047873 88 H--YF-RIPARGCRCLIDRMMRTNLPTVTLGFYLEILD----YGYS-PSVYVFNVLMHKLCKEGKI-------------- 145 (464)
Q Consensus 88 ~--~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~-------------- 145 (464)
+ |- -....+...+...+--.|.+++|+....+-+. .|-. ....++..+...|...|+.
T Consensus 86 r~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ 165 (639)
T KOG1130|consen 86 RLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNA 165 (639)
T ss_pred HHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccH
Confidence 1 10 11234455566777778899998877665442 2211 1334455566666665542
Q ss_pred ------hhHHHHHHHHhh----CCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHh----hCCCC-CCHHHHHHHHHHH
Q 047873 146 ------KDAQMVFDEFGK----RGL-HATAVSFNTLINGHCKAKNLDEGFRLKSVME----GSGMR-PDVYTYSALINGL 209 (464)
Q Consensus 146 ------~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~ 209 (464)
+.|.++|.+-.+ .|- -.-...|..|...|.-.|+++.|+...+.-. +.|-+ .....+..+.+++
T Consensus 166 ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 166 EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH 245 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence 123333322111 110 0012234444455555566666655543321 11211 1223455566666
Q ss_pred HhcCChhHHHHHHHHH
Q 047873 210 CKENRLDDAELLLHEM 225 (464)
Q Consensus 210 ~~~~~~~~a~~~~~~~ 225 (464)
.-.|+++.|.+.|...
T Consensus 246 iflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLT 261 (639)
T ss_pred hhhcccHhHHHHHHHH
Confidence 6666666666655543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00021 Score=48.04 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcC-CCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRG-THLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
|....+|+.+...|...|++++|++.|++++.- .+..+ ..|+. .++..+...|...|++++|++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 68 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-------------EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEY 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-------------HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455778999999999999999999999999831 11111 12232 6788899999999999999999
Q ss_pred HHHHHh
Q 047873 82 FRLLRK 87 (464)
Q Consensus 82 ~~~~~~ 87 (464)
+++..+
T Consensus 69 ~~~al~ 74 (78)
T PF13424_consen 69 YQKALD 74 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987653
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00023 Score=46.55 Aligned_cols=63 Identities=16% Similarity=0.041 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC-ChhhHHHHHHHHHhc
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN-LPTVTLGFYLEILDY 123 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 123 (464)
.+|..+...+...|++++|+..|++..+.+ +.+...+..+..++...| ++++|+..+++.++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 466667777777777777777777777765 345666777777777777 577777777776653
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0031 Score=54.93 Aligned_cols=134 Identities=10% Similarity=-0.021 Sum_probs=75.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcC----CCC-hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKG----MGS-SASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
-++.|.+.|+|..|...|+++++.-. ... ....... .-...++.++..|.+.+++..|++..+..+.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 35678999999999999999874211 111 0011110 1113455566666666666666666666666
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh-HHHHHHHHh
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD-AQMVFDEFG 156 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 156 (464)
.+ +.+..+...-..++...|+++.|...|+++++..+. |-.+-+.|+.+..+.....+ ..++|..|-
T Consensus 286 ~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 286 LD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred cC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 445556556666666666666666666666665443 44444444444443333332 244555553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0039 Score=49.61 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC
Q 047873 196 RPDVYTYSALINGLCK-----ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270 (464)
Q Consensus 196 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 270 (464)
..+-.+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.|+..+-+ |.+- -..+|+.+-.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-------p~n~fQ~~F~-- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-------PRNFFQAEFM-- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------cccHHHHHhc--
Confidence 4466677777777654 46677777778888888888888888888887765 4331 1111111111
Q ss_pred CCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 047873 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG 324 (464)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 324 (464)
- -..+-+-|++++++|...|+.||..++..+++.+++.+
T Consensus 114 -------------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 -------------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred -------------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 0 11233446666666666666666666666666665554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00022 Score=46.47 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=21.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
.|++++|++.|+++.... |-+...+..++.++.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444443 22334444444444444444444444444443
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0028 Score=56.56 Aligned_cols=68 Identities=9% Similarity=-0.120 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-h---hHHHHHHHHHhcCChhH
Q 047873 2 HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-L---VLDALMIVYVDLGFLDD 77 (464)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~l~~~~~~~g~~~~ 77 (464)
.-|.+..+|+.++.+|...|++++|+..|++++ .+.|+. . +|..+..+|...|+.++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rAL-------------------eL~Pd~aeA~~A~yNLAcaya~LGr~dE 130 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETAL-------------------ELNPNPDEAQAAYYNKACCHAYREEGKK 130 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------hhCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 346788899999999999999999999999988 566776 2 48899999999999999
Q ss_pred HHHHHHHHHhC
Q 047873 78 AIQCFRLLRKH 88 (464)
Q Consensus 78 A~~~~~~~~~~ 88 (464)
|++.+++..+.
T Consensus 131 Ala~LrrALel 141 (453)
T PLN03098 131 AADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHh
Confidence 99999988775
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00076 Score=44.61 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=36.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 15 HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
++|.+++++++|++.++.++ ...|++ ..|.....++.+.|++++|.+.|+.+.+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l-------------------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERAL-------------------ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHH-------------------HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45666777777777777766 344444 666666666777777777777777666654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0087 Score=48.92 Aligned_cols=169 Identities=14% Similarity=0.095 Sum_probs=99.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFR--IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
.+-..+..+...|++.+|++.|+.+....+. ....+...++.++.+.|+++.|...+++.++.-+.....-+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3344555677899999999999999877422 22456778888999999999999999999887654332223322222
Q ss_pred HHhcC-------------ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 047873 139 LCKEG-------------KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205 (464)
Q Consensus 139 ~~~~~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (464)
.+..+ ...+|...|+ .++.-|-...-..+|...+..+... =...--.+
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~---------------~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~i 147 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFE---------------ELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHH---------------HHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHH---------------HHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 22111 1123333333 3344444444555565555554421 01111236
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCc
Q 047873 206 INGLCKENRLDDAELLLHEMCERGLTPN----DVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 206 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 250 (464)
...|.+.|.+..|..-++.+.+. -|+ ......++.+|.+.|..
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCCh
Confidence 77889999999999999998876 233 23445667777777754
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.003 Score=50.26 Aligned_cols=120 Identities=22% Similarity=0.259 Sum_probs=88.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHH
Q 047873 219 ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIR 298 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (464)
...|+..... ..+..+|..++..+.+.. ....|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+-
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~-~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------ 103 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRD-VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------ 103 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcC-CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc------
Confidence 3455554222 348889999999998875 44467888889999999999999999999999988754 3332
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 047873 299 KEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360 (464)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 360 (464)
|. ..+.++..- --.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 104 ---------p~-n~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 ---------PR-NFFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------cc-cHHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 122222221 223557899999999999999999999999999977665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.048 Score=44.89 Aligned_cols=59 Identities=7% Similarity=-0.089 Sum_probs=38.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 169 TLINGHCKAKNLDEGFRLKSVMEGSGMRPD---VYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 169 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
.+.+.|.+.|.+..|..-++.|.+. .+-+ ...+-.+..+|...|-.++|.+.-.-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3456677888888888888888765 2222 233455667777888888777766655544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0056 Score=51.88 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC--CChhhHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS--PSVYVFNVL 135 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 135 (464)
..|...+..+.+.|++++|+..|+.+....+... +.++..++..+...|++++|...|+.+.+..+. ....++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3344444444555666666666666666531111 235555666666666666666666666653322 123333444
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..++...|+.+.|.++|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555666666666666666554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0087 Score=46.02 Aligned_cols=69 Identities=14% Similarity=0.271 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhh-----CCCCCCccc
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK-----RGLHATAVS 166 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 166 (464)
...++..+...|++++|..+++.++...+- +...|..+|.++...|+...|.++|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455555566666666666666665543 556666666666666666666666655532 255555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.12 Score=46.21 Aligned_cols=411 Identities=14% Similarity=0.126 Sum_probs=204.2
Q ss_pred HHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 047873 16 FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 95 (464)
.+.+.|++.+|.++|.++..+.. .+...+. ....-+.++++|.. ++.+.....+....+.. | ..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~--~~~f~lk----------eEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s 78 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKE--SSPFLLK----------EEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KS 78 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--cchHHHH----------HHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-Cc
Confidence 45678999999999999875321 1111111 11334567777764 45555555555555442 2 33
Q ss_pred cHHHHHHH--HHcCCChhhHHHHHHHHHhc--CCCC------------ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 047873 96 GCRCLIDR--MMRTNLPTVTLGFYLEILDY--GYSP------------SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159 (464)
Q Consensus 96 ~~~~l~~~--~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (464)
.|..+..+ +-+.+.+.+|++.+..-... +..+ |-..-+..+.++...|++.++..+++++..+=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 45555444 34678888888877665443 2211 12222556778888999999999888876542
Q ss_pred C----CCCcccHHHHHHHHHhc--------CC-------hhHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhc--
Q 047873 160 L----HATAVSFNTLINGHCKA--------KN-------LDEGFRLKSVMEGS------GMRPDVYTYSALINGLCKE-- 212 (464)
Q Consensus 160 ~----~~~~~~~~~l~~~~~~~--------~~-------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~-- 212 (464)
+ .-+..+|+.++-.+.+. .. ++.+.-..+++... .+.|.......++....-.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 2 35777787755544432 11 22222222333211 1233333334444333221
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC----CCHHhHHHHHHHHHh
Q 047873 213 NRLDDAELLLHEMCERGLTPN-DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN----PDKITYTILLDGFCK 287 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~ 287 (464)
.+..--++++..-...-+.|+ ..+...+...+.+. .+++..+-+.+....+. .=..++..++....+
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~--------~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSD--------PEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcC--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 112222233332222222333 12222333333331 12333333332221110 012345555555555
Q ss_pred CCChHHHHHHHHHHHHcCCCC------------------------------------------CH-HHHHHHHH---HHh
Q 047873 288 EGDLESALDIRKEMIKRGIEL------------------------------------------DN-VAFTALIS---GFC 321 (464)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~------------------------------------------~~-~~~~~l~~---~~~ 321 (464)
.++...|.+.+.-+.-.++.. |. .....++. -+-
T Consensus 311 ~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLW 390 (549)
T ss_pred HHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 666555555554433322110 10 11111111 122
Q ss_pred ccCC-hHHHHHHHHHHHHCCCCCCHhhHHHHH----HHHHh---cCChHHHHHHHHHHHhCCCCcC----HHHHHHHHH-
Q 047873 322 RGGK-VVEAERMLREMLKVGLKPDDATYTMVI----DCFCK---NGDTKTGFRLLKEMRSDGHLPA----VETYNALMN- 388 (464)
Q Consensus 322 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~---~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~- 388 (464)
+.|. -++|+.+++.+.+-. +.|...-+.+. ..|.. ...+..-..+-+-+.+.|+.|- ...-|.+.+
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 2333 566677776666542 22333322222 12221 1223333333333344466553 223344433
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchhHHHHhhc
Q 047873 389 -GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVS 455 (464)
Q Consensus 389 -~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~ 455 (464)
-+..+|+++++.-.-.-+.+ +.|++.+|..+.-......++++|..++.+ +.|+..++++=+.
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~--LP~n~~~~dskvq 533 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK--LPPNERMRDSKVQ 533 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh--CCCchhhHHHHHH
Confidence 34568899888776655554 689999999998888899999999999985 4566666665443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=43.51 Aligned_cols=58 Identities=7% Similarity=-0.066 Sum_probs=42.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 67 IVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 67 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
..|.+.+++++|+++++.+...+ |.+...+.....++.+.|++.+|.+.++..++.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45677788888888888877775 44666777777777778888888888887777654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.14 Score=44.69 Aligned_cols=262 Identities=13% Similarity=0.096 Sum_probs=162.3
Q ss_pred hhHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 60 LVLDALMI--VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 60 ~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
..+..++. .-.-.|++++|.+-|+.|.... ..-.-....|.-...+.|..+.|.+.-+.....-+. -...+..++.
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe 196 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLE 196 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHH
Confidence 44444443 3456799999999999987641 111122334444445788888888888887765544 5778888999
Q ss_pred HHHhcCChhhHHHHHHHHhhCC-CCCCccc--HHHHHHHHH---hcCChhHHHHHHHHHhhCCCCCCHHH-HHHHHHHHH
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRG-LHATAVS--FNTLINGHC---KAKNLDEGFRLKSVMEGSGMRPDVYT-YSALINGLC 210 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 210 (464)
..+..|+|+.|+++++.-.... +.++..- -..|+.+-. -.-+...|...-.+..+ +.|+..- -..-...+.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf 274 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALF 274 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHH
Confidence 9999999999999998765542 2233221 122332221 12334455554444433 3555432 233456788
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC-CCCC-CHHhHHHHHHHHHhC
Q 047873 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNP-DKITYTILLDGFCKE 288 (464)
Q Consensus 211 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 288 (464)
+.|+..++-.+++.+-+..+.|+. + .+..+.+.|+. ++.-+++.... .++| +......+..+-...
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--------a~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--------ALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred hccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--------HHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 899999999999999887544443 2 23334555543 33333333221 1233 455666677777888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHC
Q 047873 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCR-GGKVVEAERMLREMLKV 339 (464)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 339 (464)
|++..|..--+...+. .|....|..|...-.. .|+-.++...+.+..+.
T Consensus 343 ~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 343 GEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8888887776666654 5567777777766544 48888888888888775
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0034 Score=48.28 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHH-----hcCCCCChhhHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEIL-----DYGYSPSVYVFN 133 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 133 (464)
+...++..+...|++++|+.+.+.+...+ |.+...+..++.++...|+...|.+.|+++. +.|..|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45557777778888888888888888776 5677788888888888888888888887764 357777766543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.09 Score=40.26 Aligned_cols=91 Identities=10% Similarity=-0.007 Sum_probs=69.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 047873 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361 (464)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 361 (464)
..-+...|++++|..+|+-+...++. +..-+..|..++-..+++++|...|......+ ..|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 34456778888888888888776654 66667777777778888888888888877665 34666677778888888888
Q ss_pred HHHHHHHHHHHhC
Q 047873 362 KTGFRLLKEMRSD 374 (464)
Q Consensus 362 ~~a~~~~~~~~~~ 374 (464)
+.|+..|...++.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888874
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.15 Score=41.58 Aligned_cols=204 Identities=11% Similarity=0.089 Sum_probs=108.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 047873 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS----KKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLD 76 (464)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 76 (464)
|++..-...|..-..+|-...++++|-..+.++.. .+++..+. ..+...+-.......+.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAA----------------KayEqaamLake~~kls 88 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAA----------------KAYEQAAMLAKELSKLS 88 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHH----------------HHHHHHHHHHHHHHHhH
Confidence 34445566677777788888888888888877762 11122222 22233333334444555
Q ss_pred HHHHHHHHHH----hCCCCCChhcH-HHHHHHHHcCCChhhHHHHHHHHHhc---CC--CCChhhHHHHHHHHHhcCChh
Q 047873 77 DAIQCFRLLR----KHYFRIPARGC-RCLIDRMMRTNLPTVTLGFYLEILDY---GY--SPSVYVFNVLMHKLCKEGKIK 146 (464)
Q Consensus 77 ~A~~~~~~~~----~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~ 146 (464)
++.++|++.. +.| .|+..+. .--..-..+..++++|+++|++.... +- ..-...+..+.+.+.+...++
T Consensus 89 Evvdl~eKAs~lY~E~G-spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECG-SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HHHHHHHHHHHHHHHhC-CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 5555555532 223 2222111 11112234566778888888775532 11 112334556666777777777
Q ss_pred hHHHHHHHHhhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCChhHH
Q 047873 147 DAQMVFDEFGKR----GLHAT-AVSFNTLINGHCKAKNLDEGFRLKSVMEGSG---MRPDVYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 147 ~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a 218 (464)
+|-..+.+-... .--++ -..|...|-.+.-..++..|...++..-+.+ -..+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 766555443211 00111 1224455556666778888888887754432 233456666777665 45666666
Q ss_pred HHHH
Q 047873 219 ELLL 222 (464)
Q Consensus 219 ~~~~ 222 (464)
.+++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.25 Score=44.20 Aligned_cols=384 Identities=12% Similarity=0.130 Sum_probs=211.8
Q ss_pred hCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CCh
Q 047873 19 AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR----IPA 94 (464)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~ 94 (464)
+.|.+.+|++.+..-..+-...++.-+-..+-+ .-+|-..-+..+..+...|++.+++.+++++...-.+ .+.
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~---l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ---LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHH---HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 678888888887765433222222222221111 1122234456677889999999999999998765333 677
Q ss_pred hcHHHHHHHHHcC--------CChhhHHHHHHH-------HHhc------CCCCChhhHHHHHHHHHhc--CChhhHHHH
Q 047873 95 RGCRCLIDRMMRT--------NLPTVTLGFYLE-------ILDY------GYSPSVYVFNVLMHKLCKE--GKIKDAQMV 151 (464)
Q Consensus 95 ~~~~~l~~~~~~~--------~~~~~a~~~~~~-------~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~ 151 (464)
.+|+.++-.+.++ ...+-+.+.|+- +... ...|.......++....-. .+..--.++
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~ 247 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQI 247 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHH
Confidence 8888765555432 222222222222 2111 1234444444444443322 223334455
Q ss_pred HHHHhhCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 152 FDEFGKRGLHATAV-SFNTLINGHCKAKNLDEGFRLKSVMEGSGMR----PDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 152 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
++.....-+.|+-. +...+...+.. +.+++..+-+.+....+. .-..++..++....+.++...|.+.+.-+.
T Consensus 248 l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 248 LENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55554444445432 23333333333 555555555554433211 124568888888999999999999888876
Q ss_pred HCCCCCCHHHHH-------HHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHH---HHHHHhCCC-hHHHH
Q 047873 227 ERGLTPNDVIFT-------TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL---LDGFCKEGD-LESAL 295 (464)
Q Consensus 227 ~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~-~~~a~ 295 (464)
-.. |+...-. .+-+..+..... ..+...-+.+++.....++.. ......+ ..-+.+.|. -++|+
T Consensus 326 ~ld--p~~svs~Kllls~~~lq~Iv~~DD~~--~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 326 ILD--PRISVSEKLLLSPKVLQDIVCEDDES--YTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred hcC--CcchhhhhhhcCHHHHHHHHhcchHH--HHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHH
Confidence 653 3322111 122222211000 112233444555554443321 1111222 233455565 88899
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH----HHhc---cCChHHHHHHHHHHHHCCCCCCH----hhHHHHHH--HHHhcCChH
Q 047873 296 DIRKEMIKRGIELDNVAFTALIS----GFCR---GGKVVEAERMLREMLKVGLKPDD----ATYTMVID--CFCKNGDTK 362 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~--~~~~~~~~~ 362 (464)
++++.+++-.. .|..+-+.+.. +|.+ ...+.+-..+-+-+.+.|++|-. ..-|.|.+ .+...|++.
T Consensus 401 nLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 401 NLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 99998887532 25544444332 2221 23455555555556667776543 33344443 356789999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047873 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNI 420 (464)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 420 (464)
++.-.-..+.+ +.|++.+|..+.-++....++++|+.++..+ +|+..+++.
T Consensus 480 kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 480 KCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 98876665655 6799999999999999999999999999874 677777765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.25 Score=43.95 Aligned_cols=172 Identities=13% Similarity=0.062 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRG---IELDNVAFTALISGFCR---GGKVVEAERMLREMLKVGLKPDDATYTM 350 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (464)
+...++-+|....+++..+++++.+...- +.-...+-.....++.+ .|+.++|+.++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455557888888888888888887651 11123333345556666 7888888888888665555677788877
Q ss_pred HHHHHH----h-----cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC----HHHHHHHH---HHHH-hCC---
Q 047873 351 VIDCFC----K-----NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ----LKNANMLL---DTML-DLG--- 410 (464)
Q Consensus 351 ll~~~~----~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~---~~~~-~~~--- 410 (464)
+...|- . ....++|...|.+.-+. .|+...=-.++..+...|. -.+..++- ..+. +.|
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 776652 1 12366777777766654 2332221112222222222 11222222 2222 222
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhHH
Q 047873 411 VVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYACY 450 (464)
Q Consensus 411 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~~ 450 (464)
-..+.-.+.+++.++.-.|+++.|.+..++ ....|...-.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 223555667778888888888888888887 4555654333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.16 Score=41.81 Aligned_cols=154 Identities=9% Similarity=-0.020 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----------CChh----cH-HHHH--HHHHcCCChhhHHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR-----------IPAR----GC-RCLI--DRMMRTNLPTVTLGFYLEIL 121 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~----~~-~~l~--~~~~~~~~~~~a~~~~~~~~ 121 (464)
..|+.-+.++.+...+++|.--++.+...+.+ |+.. -| ..++ .+....|++.+.+.-+..+.
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 77888888888888888888777666554411 1100 00 0111 12223444444433333222
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH
Q 047873 122 DYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYT 201 (464)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 201 (464)
. ....++..+......+...+.+++-. ..+.+.++..+.-.|.+.-...++.+.++...+.++..
T Consensus 150 ~--------~V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 150 T--------VVSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred H--------HHHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 1 01112222222222233334433321 12344555555566666666666666666554555666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 202 YSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
...|++.-...||.+.|...|++..+.
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666777777777777665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.36 Score=45.69 Aligned_cols=109 Identities=8% Similarity=0.066 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.+|+.+...+.....|++|.+.|..-... ...+.++....++++...+-+. .+-+....-.+..++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHH
Confidence 45555666666555666666665432111 1223333333344333322222 222555566667777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
.+.|.-++|.+.|-+-.. | ...+..|...++|.+|.++-+...
T Consensus 863 ~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred HhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777666543221 1 234455666667777766655543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.051 Score=48.97 Aligned_cols=132 Identities=8% Similarity=-0.043 Sum_probs=66.8
Q ss_pred HHH--HHHHHHHHh--CC---ChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHh--------
Q 047873 8 HAY--STMVHFLVA--HK---MHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVD-------- 71 (464)
Q Consensus 8 ~~~--~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-------- 71 (464)
.+| ..++++... ++ ..+.|+.+|.++++.+ ..+|+. ..|..+...+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~----------------~ldp~~a~a~~~lA~~h~~~~~~g~~~ 315 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS----------------DIQTLKTECYCLLAECHMSLALHGKSE 315 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc----------------cCCcccHHHHHHHHHHHHHHHHhcCCC
Confidence 566 555555544 22 2466777788877432 344554 455444443321
Q ss_pred -cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 72 -LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 72 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
.....+|++..++..+.+ +.|+.+...+..++.-.++++.|..+|++....++. ...+|......+.-.|+.++|.+
T Consensus 316 ~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 316 LELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred chHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 122334444555555554 344555555555555555555555555555554433 34444444444455555555555
Q ss_pred HHHHHhh
Q 047873 151 VFDEFGK 157 (464)
Q Consensus 151 ~~~~~~~ 157 (464)
.+++..+
T Consensus 394 ~i~~alr 400 (458)
T PRK11906 394 CIDKSLQ 400 (458)
T ss_pred HHHHHhc
Confidence 5555443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0033 Score=42.18 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GH-LPA-VETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
.+++.+...|...|++++|+..|++..+. |. .|+ ..++..+..+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555666666666655555432 10 011 3345555556666666666666655543
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0029 Score=36.73 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
.+|..+...|.+.|++++|+++|+++++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999994
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.3 Score=42.85 Aligned_cols=299 Identities=15% Similarity=0.143 Sum_probs=161.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
+|..++..-...|+.+-|..+++. .|.+. .=+..+.+.|+.+.| +.+..+.|- ||. +|..++..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~---~qVplLL~m~e~e~A---L~kAi~SgD-~DL-i~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRAS---KQVPLLLKMGEDELA---LNKAIESGD-TDL-IYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChH---HHHHHHhcCCchHHH---HHHHHHcCC-ccH-HHHHHHHHHH
Confidence 456677777889999999988763 33332 224456667777777 456666552 132 4444444322
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 220 (464)
.. ... +++ .+... .|. -..+...|++..+.+....+|..-.+ ........+-.++. ..+.+.-..
T Consensus 68 ~l-~~s---~f~-~il~~--~p~---a~~l~~~~~r~~~~~~L~~~y~q~d~----~~~~a~~~l~~~~~-~~~~~~~~~ 132 (319)
T PF04840_consen 68 KL-SLS---QFF-KILNQ--NPV---ASNLYKKYCREQDRELLKDFYYQEDR----FQELANLHLQEALS-QKDVEEKIS 132 (319)
T ss_pred hC-CHH---HHH-HHHHh--Ccc---hHHHHHHHHHhccHHHHHHHHHhcch----HHHHHHHHHHHHHh-CCChHHHHH
Confidence 22 221 233 22222 122 13345556666666665555543211 01111111222222 234333333
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHH
Q 047873 221 LLHEMCER-GLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRK 299 (464)
Q Consensus 221 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (464)
.+....+. +-..+......++.-..+. -+-..-++.-. +......+.+..+.-+...|+...|.++-.
T Consensus 133 ~L~~a~~~y~~~k~~~f~~~~~e~q~~L---------l~~Q~~Le~~~--~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k 201 (319)
T PF04840_consen 133 FLKQAQKLYSKSKNDAFEAKLIEEQIKL---------LEYQKELEEKY--NTNFVGLSLNDTIRKLIEMGQEKQAEKLKK 201 (319)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHH---------HHHHHHHHHHh--ccchhcCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 33333221 0001111111222111110 01111111111 111122345555667778899888887765
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 047873 300 EMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379 (464)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 379 (464)
+. . .|+...|...+.+++..+++++-..+... +-.+.-|..++.+|.+.|...+|..++.++ +
T Consensus 202 ~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~------~- 264 (319)
T PF04840_consen 202 EF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI------P- 264 (319)
T ss_pred Hc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC------C-
Confidence 54 2 36899999999999999999988876542 224578999999999999999999888772 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047873 380 VETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGH 425 (464)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (464)
+..-+..|.+.|++.+|.+..-+. -|...+..+...+
T Consensus 265 ---~~~rv~~y~~~~~~~~A~~~A~~~------kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 265 ---DEERVEMYLKCGDYKEAAQEAFKE------KDIDLLKQILKRC 301 (319)
T ss_pred ---hHHHHHHHHHCCCHHHHHHHHHHc------CCHHHHHHHHHHC
Confidence 245678889999999998765443 2455444444444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.012 Score=43.37 Aligned_cols=98 Identities=10% Similarity=0.059 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHH-HHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFAS-ILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
|...+..++.++++.|+.+....++++.- |.......-.. ........|+..++.+++.+|..+|++..|+++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 35678889999999999999999987764 11111111110 334447788889999999999999999999999998
Q ss_pred HHhC-CCCCChhcHHHHHHHHHc
Q 047873 85 LRKH-YFRIPARGCRCLIDRMMR 106 (464)
Q Consensus 85 ~~~~-~~~~~~~~~~~l~~~~~~ 106 (464)
+.+. +++.+...|..|+.-...
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHH
Confidence 8765 566677788888865443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.088 Score=38.86 Aligned_cols=102 Identities=9% Similarity=0.102 Sum_probs=67.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047873 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207 (464)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 207 (464)
|..++..++.++++.|+.+....+++..= |+..+...- .+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566777777777777777777775542 222221100 000 1122346788899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 047873 208 GLCKENRLDDAELLLHEMCER-GLTPNDVIFTTLIDGHCKNGR 249 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 249 (464)
+|+..|++..|+++.+...+. +++.+...|..|+.-.....+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999887765 666678888888876655444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.067 Score=39.92 Aligned_cols=84 Identities=10% Similarity=0.049 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
+...+..-+....+.|++++|++.|+.+..+-.. -+-...+...++.+|.+.|++++|+..++++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~---------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF---------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444444555566777777777777777643221 1111255566777777777777777777777
Q ss_pred HhCCCCCChhcHHHHHHHH
Q 047873 86 RKHYFRIPARGCRCLIDRM 104 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~ 104 (464)
.+..+......|...+.++
T Consensus 74 irLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHhCCCCCCccHHHHHHHH
Confidence 7775433333444444444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.41 Score=42.89 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=80.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 047873 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDG-HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDIT-YNILLEG 424 (464)
Q Consensus 347 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~ 424 (464)
+|...+..-.+....+.|..+|-++++.+ ..+++..+++++..++ .|+...|.++|+.-... -||... -...+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 35556666677778899999999999987 5577888888888665 57888999999886653 344443 4566677
Q ss_pred HHhcCCHHHHHHHHHh--cCCCCc--hhHHHHhhccchhhh
Q 047873 425 HCKHGNPEDFDKLQSE--KGLVSD--YACYTSLVSKSSKYR 461 (464)
Q Consensus 425 ~~~~g~~~~a~~~~~~--~~~~p~--~~~~~~ll~~~~~~~ 461 (464)
+.+.++-+.|..++++ -.+..+ ...|..+|+=-+++|
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVG 516 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 7788998999999885 122222 667777776544444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.033 Score=46.25 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=55.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC--ChhhHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFR--IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP--SVYVFNVLM 136 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 136 (464)
.|+.-+.. .+.|++.+|.+.|....+..+. -.+.++.-|+..+...|+++.|..+|..+.+.-+.. -+..+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 44433333 3456666666666666665311 123445556666666666666666666666543221 234555666
Q ss_pred HHHHhcCChhhHHHHHHHHhhC
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666667777777777766665
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.057 Score=44.93 Aligned_cols=99 Identities=12% Similarity=0.056 Sum_probs=77.0
Q ss_pred hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC--CCCCcccHHH
Q 047873 94 ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP--SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG--LHATAVSFNT 169 (464)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 169 (464)
...|+..+. +.+.|++..|.+.|...++..+.. .+.++--|..++...|+++.|..+|..+.+.. -+.-+..+-.
T Consensus 142 ~~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 345665554 457788999999999999876441 24456678999999999999999999988762 1122356777
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
|..+..+.|+.++|..+|+.+.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888889999999999999999876
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.07 Score=39.81 Aligned_cols=83 Identities=12% Similarity=0.045 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYF--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
+-.-+....+.|++++|++.|+.+..+-+ +-...+-..++.++.+.++++.|...+++.++..+...-.-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 33344456688999999999999988742 2235667889999999999999999999999988765555566666665
Q ss_pred HhcCC
Q 047873 140 CKEGK 144 (464)
Q Consensus 140 ~~~~~ 144 (464)
+....
T Consensus 93 ~~~~~ 97 (142)
T PF13512_consen 93 SYYEQ 97 (142)
T ss_pred HHHHH
Confidence 54443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.054 Score=39.22 Aligned_cols=89 Identities=13% Similarity=-0.017 Sum_probs=37.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCh
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV---YVFNVLMHKLCKEGKI 145 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 145 (464)
+...|+.+.|++.|.+....- |-...+|+.-..++.-.|+.++|++-+++.++..-.... ..|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344444455555444444432 223444444444444444555554444444432211111 1222223334445555
Q ss_pred hhHHHHHHHHhhC
Q 047873 146 KDAQMVFDEFGKR 158 (464)
Q Consensus 146 ~~a~~~~~~~~~~ 158 (464)
+.|..=|+..-+.
T Consensus 132 d~AR~DFe~AA~L 144 (175)
T KOG4555|consen 132 DAARADFEAAAQL 144 (175)
T ss_pred HHHHHhHHHHHHh
Confidence 5555555444443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.058 Score=48.53 Aligned_cols=68 Identities=10% Similarity=-0.076 Sum_probs=56.1
Q ss_pred CCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh---hcHHHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 55 THLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA---RGCRCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 55 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
..|+. ..++.+..+|.+.|++++|+..|++..+.+ |-+. .+|..+..+|...|+.++|++.++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555 889999999999999999999999988875 2233 34888999999999999999999998875
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.029 Score=40.65 Aligned_cols=138 Identities=13% Similarity=0.156 Sum_probs=66.1
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCh
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPA 94 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~ 94 (464)
+.-.|..++..++..+...++...++..+.=.++.+....--..++..+... ...+|+....+..+-.+- ...
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n-----~~s 86 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN-----KLS 86 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--------
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc-----chH
Confidence 4458999999999999987665555555555555431111000122222221 134445444444443221 123
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
+.....+..+...|+-+...+++..+.+. -.+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555556666666666666665542 234566666666666666666666666666666553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.24 Score=46.29 Aligned_cols=252 Identities=13% Similarity=0.165 Sum_probs=134.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHH---------HHHhhCCCCCCcccHHHHHHHHHhcCChh--HHHHHHHHHhhCCCC
Q 047873 128 SVYVFNVLMHKLCKEGKIKDAQMVF---------DEFGKRGLHATAVSFNTLINGHCKAKNLD--EGFRLKSVMEGSGMR 196 (464)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~ 196 (464)
-+..+.+-+..|.+.|.+++|.++- +.+... ..+...++..=.+|.+.++.. +...-++++++.|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 3344455566777888887776532 111111 123344555556666655533 344445677777766
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCcccccCHHHHHHHHHHHH--hC
Q 047873 197 PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFT-----TLIDGHCKNGRIDMAGDMKEARKIVDEMC--TN 269 (464)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~ 269 (464)
|+... +...++-.|.+.+|-++|.+--..+ .....|+ -...-+...|.. ++-..+.++-. ..
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~------~eKKmL~RKRA~WAr 701 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDP------KEKKMLIRKRADWAR 701 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCCh------HHHHHHHHHHHHHhh
Confidence 77643 3445566677777777775532210 0011111 112223333332 12111111110 00
Q ss_pred CC-CCCHHhHHHHHHHHHhCCChHHHHHHHHH------HHHcCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 270 GL-NPDKITYTILLDGFCKEGDLESALDIRKE------MIKRGIE---LDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 270 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
.+ +| .+....+...|+.++|..+.-+ +.+.+.+ .+..+...+...+.+...+.-|.++|..|-..
T Consensus 702 ~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 702 NIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred hcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 11 12 2234445566777777665321 1111111 13445555555566677777888888876432
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 340 GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE-----------TYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 340 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
..+++.....++|.+|..+-++..+. .||+. -|...-.+|.+.|+..+|..+++++..
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 34667778889999998887766553 33321 244555788899999999999998864
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.33 Score=39.69 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047873 383 YNALMNGLCKHGQLKNANMLLDTMLD---LGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439 (464)
Q Consensus 383 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 439 (464)
|...|-.+....++..|.+.++.--+ ..-+-+..+...|+.+| ..|+.+++.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 33344444455566666666655322 11122455556666665 4466666555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.4 Score=40.53 Aligned_cols=147 Identities=16% Similarity=0.053 Sum_probs=102.6
Q ss_pred HHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCh
Q 047873 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180 (464)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (464)
.......|++.+|..+|......... +......++.+|...|+.+.|..++..+....-.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34566789999999999999887665 56777789999999999999999999987652111222223345566666666
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCc
Q 047873 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG-LTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 250 (464)
.+...+-.++-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.--|..
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 6666666665542 3366666778888999999999998877776552 122555666677766666644
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.039 Score=48.37 Aligned_cols=92 Identities=13% Similarity=-0.026 Sum_probs=55.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC-----CCCC---------ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKH-----YFRI---------PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (464)
.+.|.+.|++..|..-|+++... +.++ ...++..+..++.+.+.+..|+...++++..++. |+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhH
Confidence 44688889999999988886542 1111 1223445555556666666666666666655543 5555
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.-.-..++...|+++.|+..|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555566666666666666666666554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.2 Score=45.08 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=69.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 047873 281 LLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD 360 (464)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 360 (464)
.+..--++|.+..|..++..-.+. -..+|.+....+.+...+++|.-+|+..-+ ..-.+.+|..+|+
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 333334555555555544321111 123444444555556667776666655422 1234566667777
Q ss_pred hHHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047873 361 TKTGFRLLKEMRSDGHLPAVE--TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQ 438 (464)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 438 (464)
|.+|+.+-.++... -+.. +-..|+.-+...+++-+|-++..+.... | ...+..+++...|++|.+..
T Consensus 981 Wr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 981 WREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred HHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHH
Confidence 77777776665432 1211 2245666677777777777777665431 1 12223344445555555554
Q ss_pred Hh
Q 047873 439 SE 440 (464)
Q Consensus 439 ~~ 440 (464)
..
T Consensus 1050 ~~ 1051 (1265)
T KOG1920|consen 1050 SK 1051 (1265)
T ss_pred Hh
Confidence 43
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.58 Score=41.15 Aligned_cols=310 Identities=15% Similarity=0.127 Sum_probs=190.2
Q ss_pred ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHH--cCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhhHH
Q 047873 74 FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM--RTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK--LCKEGKIKDAQ 149 (464)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~ 149 (464)
....+...|..-++. ..|..|-.++. ..|+-..|..+-.+..+. +..|....-.++.+ -.-.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 344555555543322 34555555544 457777777776665432 12244444444433 34579999999
Q ss_pred HHHHHHhhCCCCCCcccHH----HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 150 MVFDEFGKRGLHATAVSFN----TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
+-|+.|... +.+-. .|.-..-+.|+.+.|.++-+..-... +.-...+...+...+..|+|+.|+++.+.-
T Consensus 141 ~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 141 KKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 999999762 33322 23333346889999998888776543 234567788999999999999999999987
Q ss_pred HHCC-CCCCHH--HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhCCChHHHHHHHHHH
Q 047873 226 CERG-LTPNDV--IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI-TYTILLDGFCKEGDLESALDIRKEM 301 (464)
Q Consensus 226 ~~~~-~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (464)
.... +.++.. .-..|+.+-.... .+ .+...|...-.+..+ +.|+.. .-.....++.+.|+..++-.+++.+
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~-ld--adp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSL-LD--ADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHH-hc--CChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 6542 233322 1222333222110 00 123455555444444 344432 2233456788999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC-CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 047873 302 IKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV-GLKP-DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA 379 (464)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 379 (464)
-+..+.|+. +... ...+.| +.+.+-+++..+. .++| +......+..+-...|++..|..--+.... ..|.
T Consensus 290 WK~ePHP~i--a~lY--~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pr 361 (531)
T COG3898 290 WKAEPHPDI--ALLY--VRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPR 361 (531)
T ss_pred HhcCCChHH--HHHH--HHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCch
Confidence 988666543 2222 233444 4555555554432 2334 445666677777888998888877666665 4678
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhC
Q 047873 380 VETYNALMNGLCK-HGQLKNANMLLDTMLDL 409 (464)
Q Consensus 380 ~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 409 (464)
...|..|.+.-.. .|+-.++...+-+.++.
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8888888776554 49999999999888764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.12 Score=44.27 Aligned_cols=155 Identities=12% Similarity=-0.047 Sum_probs=108.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc-CCCCC--hhhHHHHHHHHHhcCCh
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY-GYSPS--VYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~ 145 (464)
+.-.|++.+|-..++++.... |.+.-++...=.++...|+...-...+++++.. +.... +.+...+.-++.+.|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345688888888888888764 556677777778888889988888888888764 22212 23334455566788999
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM---RPDVYTYSALINGLCKENRLDDAELLL 222 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 222 (464)
++|++.-++..+.+ +.|....+++...+-..+++.++.++..+-...-- -.-..-|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998888765 45667777888888888999998887765443210 111222334455566778899999999
Q ss_pred HHH
Q 047873 223 HEM 225 (464)
Q Consensus 223 ~~~ 225 (464)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.74 Score=41.02 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---------cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 047873 288 EGDLESALDIRKEMIKRGIELDNVAFTALISGFCR---------GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358 (464)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 358 (464)
.|+.++|.+++..++.....+++.++..+...|-. ....++|...|.+.-+.. |+...-..++..+.-.
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHc
Confidence 55555555555554444444455555555444321 123677777777776643 5544433333333333
Q ss_pred CCh----HHHHHHH---HH-HHhCCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 359 GDT----KTGFRLL---KE-MRSDGH---LPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 359 ~~~----~~a~~~~---~~-~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
|.. .+..++- .. +.+.|. ..+.-.+.+++.++.-.|+.++|.+..++|.+.
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 321 1222222 11 112222 234445567888888899999999999999865
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.088 Score=48.46 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=108.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 047873 15 HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94 (464)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 94 (464)
+...-+|+++++.++.+.-. +++ .+ +....+.++..+.+.|..+.|+++-.. +
T Consensus 269 k~av~~~d~~~v~~~i~~~~----------ll~------~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~ 321 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASN----------LLP------NI--PKDQGQSIARFLEKKGYPELALQFVTD---------P 321 (443)
T ss_dssp HHHHHTT-HHH-----HHHH----------TGG------G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H
T ss_pred HHHHHcCChhhhhhhhhhhh----------hcc------cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------h
Confidence 34456999999888775211 000 11 135578888899999999999998643 2
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (464)
..-.....+.|+.+.|.++.+.. .+...|..|.....+.|+++-|.+.|.+.. -+..|+-.|
T Consensus 322 ---~~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy 383 (443)
T PF04053_consen 322 ---DHRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLY 383 (443)
T ss_dssp ---HHHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHH
T ss_pred ---HHHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHH
Confidence 22345567789999998775432 478899999999999999999999998754 367788888
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 175 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
.-.|+.+...++.+.....|- ++....++.-.|+.++..+++.+..
T Consensus 384 ~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 384 SSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 899999998899888887762 4555566667788888888776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.36 Score=37.12 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=54.4
Q ss_pred cCCChhhHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHH-----HHHHHhcCC
Q 047873 106 RTNLPTVTLGFYLEILDYGYSPSV-YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL-----INGHCKAKN 179 (464)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~ 179 (464)
..+..++|+.-|..+.+.|...-+ .............|+...|...|+++-... +.+....-+ .-.+...|.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt--~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT--SIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC--CCcchhhHHHHHHHHHHHhcccc
Confidence 344455555555555544433111 111122233444555555555555554431 112222111 112334555
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 180 LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
++......+.+-..+-+--...-..|.-+-.+.|++..|.++|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6655555555544332222333445555555666666666666665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.4 Score=42.91 Aligned_cols=176 Identities=11% Similarity=0.062 Sum_probs=105.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 12 TMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
.-+..+.+...++-|+.+-+.- +.+++. .+....++.+.+.|++++|...|-+-...-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~--------------------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ--------------------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc--------------------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 3345555566666666554331 333443 555566777788999999998876543321
Q ss_pred CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHH
Q 047873 90 FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT 169 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 169 (464)
.| ..++.-+....+..+-...++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+.-. .|.. ..-...
T Consensus 399 -e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~ 468 (933)
T KOG2114|consen 399 -EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVET 468 (933)
T ss_pred -Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHH
Confidence 11 22445555556666667777788888876 66667789999999999888777766543 2211 112445
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
.+..+.+.+-.++|.-+-..... ....... .+-..+++++|++.+..+
T Consensus 469 al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 469 ALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 56666666666666665554432 2222222 233456777777776655
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.58 Score=43.88 Aligned_cols=175 Identities=17% Similarity=0.109 Sum_probs=115.5
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHhc----cCChHH
Q 047873 259 ARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNV------AFTALISGFCR----GGKVVE 328 (464)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~ 328 (464)
..-+|.-+... +|| .+..++....=.|+-+.+++.+....+.+-.-.+. .|..++..++. ..+.+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34445555443 333 34556666677789999999888876643111221 23344433333 457889
Q ss_pred HHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCChHHHHHHHHHHHhCC---CCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047873 329 AERMLREMLKVGLKPDDATYT-MVIDCFCKNGDTKTGFRLLKEMRSDG---HLPAVETYNALMNGLCKHGQLKNANMLLD 404 (464)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 404 (464)
|.++++.+.+. -|+...|. .-.+.+...|++++|++.|++..... .+.....+--+.+.+.-..+|++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 99999999886 36655443 33566778899999999999876531 12234456677888999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHH-hcCCH-------HHHHHHHHh
Q 047873 405 TMLDLGVVPDDITYNILLEGHC-KHGNP-------EDFDKLQSE 440 (464)
Q Consensus 405 ~~~~~~~~p~~~~~~~l~~~~~-~~g~~-------~~a~~~~~~ 440 (464)
.+.+.+ ..+..+|..+..+|. ..|+. ++|.+++++
T Consensus 330 ~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 330 RLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence 999753 334555555444433 66777 778888876
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.63 Score=42.46 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 047873 349 TMVIDCFCKNGDTKTGFRLLKEMRSDGHL-PAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPD-DITYNILLEGHC 426 (464)
Q Consensus 349 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 426 (464)
..+..++.+.|+.++|.+.++++.+.... ........|+.++...+.+.++..++.+--+-..+.+ ...|+..+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 45677788899999999999999875221 2344667899999999999999999988754322222 334555443333
Q ss_pred hcC
Q 047873 427 KHG 429 (464)
Q Consensus 427 ~~g 429 (464)
..|
T Consensus 343 av~ 345 (539)
T PF04184_consen 343 AVG 345 (539)
T ss_pred hhc
Confidence 333
|
The molecular function of this protein is uncertain. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.012 Score=32.21 Aligned_cols=26 Identities=8% Similarity=0.025 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIV 34 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 34 (464)
+|+.|+++|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 58899999999999999999999965
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.02 Score=33.15 Aligned_cols=39 Identities=26% Similarity=0.148 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCL 100 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 100 (464)
++..+...|.+.|++++|+++|+++.+.. |-+...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45667777777777777777777777764 3344444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.4 Score=42.28 Aligned_cols=341 Identities=12% Similarity=0.137 Sum_probs=188.0
Q ss_pred HHHhcCChhHHHHHHHHH--------HhCCCCCChhcHH-----HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH
Q 047873 68 VYVDLGFLDDAIQCFRLL--------RKHYFRIPARGCR-----CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (464)
++.+..++++-..+.+.+ .+.|++.+.+-|. .++.-+...+.+..|+++-..+-..-.. ...+|..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHH
Confidence 455666666666655443 2446666655554 4566677889999999998877542222 2566777
Q ss_pred HHHHHHhcCCh--hhHHH-HHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC----CCHHHHHHHHH
Q 047873 135 LMHKLCKEGKI--KDAQM-VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR----PDVYTYSALIN 207 (464)
Q Consensus 135 l~~~~~~~~~~--~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 207 (464)
...-+.+..+. +.+.+ +-+++... . .....|..+..-....|+++-|..+++.=...+.. .+..-+..-+.
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 77777666432 12222 22233221 1 34567888888888899999999888753332211 01112233344
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 047873 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCK 287 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (464)
-+...|+.+-...++-.+... .+...+...++- ...|..+|.+..+.. +.. .+-..|..
T Consensus 555 kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l~~------------~p~a~~lY~~~~r~~---~~~---~l~d~y~q 613 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNK---LNRSSLFMTLRN------------QPLALSLYRQFMRHQ---DRA---TLYDFYNQ 613 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHH---HHHHHHHHHHHh------------chhhhHHHHHHHHhh---chh---hhhhhhhc
Confidence 445556666555555555432 112222222211 125555555554421 111 11122222
Q ss_pred CCChHHHHHH-HHHHH----HcCCCCCHHHHHHHHHHHhccCC----------hHHHHHHHHHHHH-CCCCCCHhhHHHH
Q 047873 288 EGDLESALDI-RKEMI----KRGIELDNVAFTALISGFCRGGK----------VVEAERMLREMLK-VGLKPDDATYTMV 351 (464)
Q Consensus 288 ~~~~~~a~~~-~~~~~----~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~-~~~~~~~~~~~~l 351 (464)
..+...+-.+ ++... ..+..|+ .....+++.+... ..+-+.+.+.+.. .+..-...+.+--
T Consensus 614 ~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dT 690 (829)
T KOG2280|consen 614 DDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDT 690 (829)
T ss_pred ccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHH
Confidence 2222221111 11100 1122222 2333334443332 1111222222221 2223344566667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047873 352 IDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNP 431 (464)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 431 (464)
+.-+...|+..+|.++-.+.+ .||...|..-+.+++..+++++-+++-+... .+.-|.-.+.+|.+.|+.
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccH
Confidence 777888899999988877765 3799999999999999999999888776653 255677788999999999
Q ss_pred HHHHHHHHhcCCCC
Q 047873 432 EDFDKLQSEKGLVS 445 (464)
Q Consensus 432 ~~a~~~~~~~~~~p 445 (464)
++|.++..+.+-.+
T Consensus 761 ~EA~KYiprv~~l~ 774 (829)
T KOG2280|consen 761 DEAKKYIPRVGGLQ 774 (829)
T ss_pred HHHhhhhhccCChH
Confidence 99999998754333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.58 Score=37.56 Aligned_cols=166 Identities=12% Similarity=-0.024 Sum_probs=101.4
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
.+.|+- .++|-+.--+...|+++.|.+.|+...+.++. ...+...-.-.+---|++.-|.+-+....+..+. |+.-
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~-DPfR- 169 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN-DPFR- 169 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCC-ChHH-
Confidence 567777 89999999999999999999999999988733 3334333333455678999998877777765543 3321
Q ss_pred HHHHHHHHhcCChhhHHHHH-HHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC------CCCHHHHHHH
Q 047873 133 NVLMHKLCKEGKIKDAQMVF-DEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM------RPDVYTYSAL 205 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l 205 (464)
...+..--..-++.+|..-+ ++... .|..-|...|-.+.- |.+ ....++++++.... +.-..||--+
T Consensus 170 ~LWLYl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 170 SLWLYLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKI-SEETLMERLKADATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 11121222334556665533 33333 244455444433322 211 12233344332211 1124567778
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 047873 206 INGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 206 ~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
...+...|+.++|..+|+-....
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 88899999999999999988765
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.3 Score=41.38 Aligned_cols=355 Identities=11% Similarity=0.040 Sum_probs=195.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHH-cCCChhhHHHHHHHHHhc-CCC-CChhhHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM-RTNLPTVTLGFYLEILDY-GYS-PSVYVFNVLM 136 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~ 136 (464)
.-|-..+..=.+.|..+.+.++|++.+.. ++.+...|......+. ..|+++.....|+.+... |.. .+...|...+
T Consensus 80 gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyi 158 (577)
T KOG1258|consen 80 GYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYI 158 (577)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHH
Confidence 56667777777888888888888887765 4566666665554433 457777777777777653 221 2456777777
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH---h------cCChhHHHHHHHHHh----------------
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC---K------AKNLDEGFRLKSVME---------------- 191 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~------~~~~~~a~~~~~~~~---------------- 191 (464)
..-..++++.....+++++.+.. ..-++..-.-|. . ....+++.++-....
T Consensus 159 e~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~ 234 (577)
T KOG1258|consen 159 EFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELE 234 (577)
T ss_pred HHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHH
Confidence 77777788888888888776541 111111111111 1 112222222211111
Q ss_pred ----hCCCCCC-H--HHHHHHH-------HHHHhcCChhHHHHHHHHHHHCC---CC----CCHHHHHHHHHHHHhcCCc
Q 047873 192 ----GSGMRPD-V--YTYSALI-------NGLCKENRLDDAELLLHEMCERG---LT----PNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 192 ----~~~~~~~-~--~~~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~ 250 (464)
..+ .|. . ...+.+. .++-..-...+....|+.-.+.. +. ++..+|..-+..-...|+.
T Consensus 235 ~~v~~~~-~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 235 IGVKDST-DPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred HHHhhcc-CccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 011 111 0 0111111 12222223333444444444331 12 2345666666666666655
Q ss_pred ccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 047873 251 DMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAE 330 (464)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 330 (464)
+.+.-+|++..-.-- .=...|-..+.-....|+.+-+..++....+-..+-.+.+--.-....-..|++..|.
T Consensus 314 ------~~~~~l~ercli~cA-~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 314 ------SRVFILFERCLIPCA-LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred ------HHHHHHHHHHHhHHh-hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 588888887753211 1122344444445555888888888877776544433333222233344568999999
Q ss_pred HHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChHHHH---HHHHHHHhCCCCcCHHHHHHHHHH-----HHhcCCHHHHHH
Q 047873 331 RMLREMLKVGLKPDDA-TYTMVIDCFCKNGDTKTGF---RLLKEMRSDGHLPAVETYNALMNG-----LCKHGQLKNANM 401 (464)
Q Consensus 331 ~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~ 401 (464)
.+++.+...- |+.. .-..-+....+.|..+.+. .++....... -+......+.-- +.-.++.+.|..
T Consensus 387 ~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 387 VILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999998763 4432 2233345556777777777 3333333321 122222222222 233678999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047873 402 LLDTMLDLGVVPDDITYNILLEGHCKHGNPE 432 (464)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 432 (464)
++.++.+. ++++...|..++..+...+...
T Consensus 463 ~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 463 ILLEANDI-LPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HHHHhhhc-CCccHHHHHHHHHHHHhCCcch
Confidence 99999875 5667888888888877666433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.74 Score=38.44 Aligned_cols=165 Identities=16% Similarity=0.025 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHH-HHHcCCChhhHHHHHHHHHhcCC--CCChhhHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID-RMMRTNLPTVTLGFYLEILDYGY--SPSVYVFNVLM 136 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 136 (464)
..+......+...+++..+.+.+.........+ ......... .+...|+++.+...+.+...... ......+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALG 174 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhh
Confidence 444445555555555555555555554432111 111112222 44555555555555555543211 01222222233
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD-VYTYSALINGLCKENR 214 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 214 (464)
..+...++.+.+...+....... +. ....+..+...+...++++.+...+....... |+ ...+..+...+...+.
T Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 175 ALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGR 251 (291)
T ss_pred hHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCC
Confidence 33444555555555555554432 11 23344444455555555555555555554431 21 2222233333334444
Q ss_pred hhHHHHHHHHHHHC
Q 047873 215 LDDAELLLHEMCER 228 (464)
Q Consensus 215 ~~~a~~~~~~~~~~ 228 (464)
.+.+...+......
T Consensus 252 ~~~~~~~~~~~~~~ 265 (291)
T COG0457 252 YEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.22 Score=45.91 Aligned_cols=142 Identities=17% Similarity=0.123 Sum_probs=103.1
Q ss_pred HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 047873 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDC 354 (464)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 354 (464)
..-.+.++..+.+.|.++.|+.+..+-.. -.....+.|+++.|.++.++ ..+...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 34578888888999999999987654322 23445788999999887544 2477899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047873 355 FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDF 434 (464)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 434 (464)
..+.|+++-|.+.|.+..+ +..++-.|.-.|+.+...++.+.....|- ++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 9999999999999987754 56677788889999888888888776542 45556666778999999
Q ss_pred HHHHHhcCCCCchhH
Q 047873 435 DKLQSEKGLVSDYAC 449 (464)
Q Consensus 435 ~~~~~~~~~~p~~~~ 449 (464)
.+++.+.|.-|....
T Consensus 422 v~lL~~~~~~~~A~~ 436 (443)
T PF04053_consen 422 VDLLIETGRLPEAAL 436 (443)
T ss_dssp HHHHHHTT-HHHHHH
T ss_pred HHHHHHcCCchHHHH
Confidence 999888776665433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.37 Score=45.21 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=22.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
.+...+.+...+..|-++|.+|-. ...+++.....++|.+|+.+-+...
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCc
Confidence 333334444444455555544432 1233444455555555555555444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.75 Score=38.16 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=33.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 281 LLDGFCKEGDLESALDIRKEMIKRGI--ELDNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
+.+.|.+.|.+-.|..-++.+++.-. ......+-.+..+|...|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 44556677777777777777766511 11123444555666666666666665554443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.52 Score=44.17 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHh
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSK 36 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 36 (464)
..++....=.|+-+.+++++.+..+.
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~ 217 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKS 217 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhcc
Confidence 34455555677777777777776543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.32 Score=35.40 Aligned_cols=92 Identities=12% Similarity=-0.079 Sum_probs=63.3
Q ss_pred HHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCccc---HHHHHHHHHhcC
Q 047873 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS---FNTLINGHCKAK 178 (464)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~ 178 (464)
.++...|+.+.|++.|.+.+..-++ ..+.||.-.+++.-.|+.++|+.=+++..+..-..+... |..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3566778888888888888876555 778888888888888888888887777766422223222 333344566677
Q ss_pred ChhHHHHHHHHHhhCC
Q 047873 179 NLDEGFRLKSVMEGSG 194 (464)
Q Consensus 179 ~~~~a~~~~~~~~~~~ 194 (464)
+-+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777766554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.1 Score=38.82 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=82.1
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHH-------HHHHHHhcC-ChhHHHHHHHHHHHC--------CCCCC-----
Q 047873 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSA-------LINGLCKEN-RLDDAELLLHEMCER--------GLTPN----- 233 (464)
Q Consensus 175 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~----- 233 (464)
.+.|+++.|..++.+........++..... ++......+ +++.|..++++..+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 356667777777666654321112222222 222233445 777776666655432 11222
Q ss_pred HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047873 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313 (464)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (464)
..+...++.+|...+..+ ..++|..+++.+...... ....+..-+..+.+.++.+.+.+++.+|+..-.. ....+
T Consensus 84 ~~iL~~La~~~l~~~~~~---~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYE---SVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCChH---HHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchH
Confidence 234555666676666543 455677777766554322 2334444455555677777777777777765221 22333
Q ss_pred HHHHHHH---hccCChHHHHHHHHHHHHCCCCCCH
Q 047873 314 TALISGF---CRGGKVVEAERMLREMLKVGLKPDD 345 (464)
Q Consensus 314 ~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 345 (464)
...+..+ ... ....|...+..+....+.|..
T Consensus 159 ~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 159 DSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 3333333 222 234555555555544334433
|
It is also involved in sporulation []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.1 Score=41.86 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCh-------hhHHHHHHHHHhcCC
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP-------TVTLGFYLEILDYGY 125 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~ 125 (464)
.+|- ++-.+.++|.+++|.++....... .......+...+..+....+. ++...-|++..+...
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 5555 556678999999999999554433 234455677777777654222 344555666655443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.1 Score=39.07 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCC---CCCHHhHHHHHHHHHhCCC-
Q 047873 215 LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL---NPDKITYTILLDGFCKEGD- 290 (464)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 290 (464)
+++.+.+++.+.+.|+.-+..+|-+...........+.......+..+|+.|.+..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 345667888888888887776665544333332222223345789999999988642 2444556655433 3333
Q ss_pred ---hHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCC--hHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 047873 291 ---LESALDIRKEMIKRGIELDN--VAFTALISGFCRGGK--VVEAERMLREMLKVGLKPDDATYTMVIDC 354 (464)
Q Consensus 291 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 354 (464)
.+.++.+|+.+.+.|+..+. ...+.++..+..... ..++..+++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 34556777777776765443 333444433332222 44788888888888888777776655443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.35 Score=41.48 Aligned_cols=147 Identities=16% Similarity=0.126 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChHHHHHH
Q 047873 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN----VAFTALISGFCRGGKVVEAERM 332 (464)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 332 (464)
.+|-..++++.+. .+.|...+...-.+|.-+|+...-...++++... ..+|. ..-..+..++...|-+++|++.
T Consensus 120 h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~ 197 (491)
T KOG2610|consen 120 HEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEKQ 197 (491)
T ss_pred cHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHHH
Confidence 4777788888775 4557777888888899999999999999988866 12233 2333445556789999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047873 333 LREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD---GHLPAVETYNALMNGLCKHGQLKNANMLLDTM 406 (464)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 406 (464)
-++..+.+ +.|..........+...|++.++.++..+-... +...-...|....-.+...+.++.|+++|+.-
T Consensus 198 A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 198 ADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 99998876 557777778888888889999998887665443 11111233555555667778999999999653
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.18 Score=39.78 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYF 90 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 90 (464)
..-++-++.+|++++|..-|..++..-. +.+ .......|..-..++.+.+.++.|++-..+..+.+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp--~~~-----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~- 164 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCP--STS-----------TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN- 164 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCc--ccc-----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-
Confidence 3345556667777777777776663100 000 00011334444556666677777776666666654
Q ss_pred CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 91 RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
|....+...-..+|.+...+++|++=|.++++..
T Consensus 165 pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 165 PTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 2223344444555666666666666666666644
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.7 Score=35.09 Aligned_cols=125 Identities=15% Similarity=0.080 Sum_probs=69.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 047873 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358 (464)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 358 (464)
..++..+.+.+.+.....+++.+...+. .+....+.++..|++.+ ..+....++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455566666677777777777776653 46667777777776553 2333444432 12333444566666666
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047873 359 GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH-GQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426 (464)
Q Consensus 359 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (464)
+-++++.-++.++.. . ...+..+... ++++.|.+++++ ..++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 666666666655532 1 1222223333 566666666654 125556666665554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.74 Score=35.28 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=13.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
-...+.+.|+|.+|+.+|+.+...
T Consensus 50 ~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 50 DGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcc
Confidence 334455566666666666665544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.8 Score=39.48 Aligned_cols=162 Identities=11% Similarity=0.043 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCcccccCHHHHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHh---------CCChHHHHHHHHHHHHcCC
Q 047873 238 TTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNPD-KITYTILLDGFCK---------EGDLESALDIRKEMIKRGI 306 (464)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~ 306 (464)
...+.+.....+.. ..+.+.|+.+|.+.... ...|+ ...|..+..++.. .....+|.++-+...+.+.
T Consensus 257 d~ylrg~~~~~~~t-~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFT-PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT 335 (458)
T ss_pred HHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence 45555554433322 23456888888888721 23444 3344444433322 1224455566666666655
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHH
Q 047873 307 ELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA---VETY 383 (464)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 383 (464)
. |+.....+..+..-.++++.|...|++....+ +....+|......+.-.|+.++|.+.+++..+. .|. ....
T Consensus 336 ~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~ 411 (458)
T PRK11906 336 V-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVI 411 (458)
T ss_pred C-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHH
Confidence 4 67777777766677777788888888777764 223455555555566677788888877776654 222 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 047873 384 NALMNGLCKHGQLKNANMLLDT 405 (464)
Q Consensus 384 ~~l~~~~~~~g~~~~a~~~~~~ 405 (464)
...+..|+.. ..++|++++-+
T Consensus 412 ~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 412 KECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHcCC-chhhhHHHHhh
Confidence 2223344443 45666666533
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.8 Score=35.35 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=75.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC-ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCC
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRI-PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY---VFNVLMHKLCKEGK 144 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 144 (464)
+.+.++.++|+..|..+...|... +.-............|+...|+..|.++-.....|-+. .-..-...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 455677777887777777765321 12223334455667777777888887777655444433 11122334566777
Q ss_pred hhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
++....-.+-+...+-+.-...-..|.-+-.+.|++..|.++|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 7777777776655443333334456666666788888888888777653
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.025 Score=30.41 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
+.+|..++.+|...|++++|++.|+++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 46899999999999999999999999984
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.3 Score=37.62 Aligned_cols=148 Identities=5% Similarity=-0.074 Sum_probs=100.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
.......|++.+|...|....... +-+......++.+|...|+.+.|..++..+..............-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345678899999999999998876 4456778889999999999999999998876543222222323345555566666
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChh
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLD 216 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 216 (464)
.+...+-...-.. +-|...-..+...+...|+.+.|++.+-.+.+.. -.-|...-..++..+.-.|.-+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 6555555555443 3366677788888999999999998776665431 1234445556666666655433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.7 Score=37.66 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=100.5
Q ss_pred HhcCChhHHHHHHHHHHhCC--CCCC-----hhcHHHHHHHHHcCC-ChhhHHHHHHHHHhc----C----CCCCh----
Q 047873 70 VDLGFLDDAIQCFRLLRKHY--FRIP-----ARGCRCLIDRMMRTN-LPTVTLGFYLEILDY----G----YSPSV---- 129 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~--~~~~-----~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~~---- 129 (464)
.+.|+.+.|...+.++.... ..|+ ...+...+..+.+.+ +++.|..++++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46799999999999887643 1222 122334444555667 999998888876553 1 22232
Q ss_pred -hhHHHHHHHHHhcCChhh---HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 047873 130 -YVFNVLMHKLCKEGKIKD---AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205 (464)
Q Consensus 130 -~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (464)
.++..++.++...+..+. |.++++.+... .+-.+.++..-+..+.+.++.+.+.+.+.+|...- .-....+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 345667778888777654 55566666444 22235666677788888899999999999998762 2133445555
Q ss_pred HHHHHh--cCChhHHHHHHHHHHHCCCCCCH
Q 047873 206 INGLCK--ENRLDDAELLLHEMCERGLTPND 234 (464)
Q Consensus 206 ~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 234 (464)
+..+.. ......+...+..+....+.|..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 554422 22335666666666655444444
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.9 Score=34.47 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=17.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR 106 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 106 (464)
++..+...+........++.+...+ +.+...++.++..+++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3333444444445555555444443 2333344444444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.21 Score=39.26 Aligned_cols=94 Identities=14% Similarity=0.090 Sum_probs=57.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYF--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (464)
.+...+...|++++|+.-++....... .....+-..+.+.....|.+++|+.+++.....+. .......-..++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 345567777777877777776654310 01122234455666777777777777776655332 23334455667777
Q ss_pred cCChhhHHHHHHHHhhCC
Q 047873 142 EGKIKDAQMVFDEFGKRG 159 (464)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~ 159 (464)
.|+-++|..-|......+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 788777777777776653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.015 Score=31.34 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQ 80 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 80 (464)
...|++ .+|+.+...|...|++++|++
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 456777 999999999999999999863
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.5 Score=40.15 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHHHHHHHH
Q 047873 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP-DVYTYSALI 206 (464)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 206 (464)
..+-..+..++.+.|+.++|.+.+.+|.+.. ...+..+...|+.++...+.+.++..++.+-.+...+. -...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 4444567777788899999999999887652 11233466788889999999999999988876543222 233455443
|
The molecular function of this protein is uncertain. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.034 Score=29.81 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
+..|..++.++...|++++|++.|++++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999984
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.06 E-value=3.1 Score=39.10 Aligned_cols=389 Identities=12% Similarity=0.079 Sum_probs=219.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
+...|..++.--....+.+.+..++..+...- |.----|......=.+.|..+.+..+|++.+. +++.+...|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 34677777765555556677777888887663 32233455566666688999999999999987 45567778877666
Q ss_pred HHHh-cCChhhHHHHHHHHhhC-CCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---
Q 047873 138 KLCK-EGKIKDAQMVFDEFGKR-GLH-ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK--- 211 (464)
Q Consensus 138 ~~~~-~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 211 (464)
.+.. .|+.+.....|+..... |.. .+...|...|..-...+++.....+|++.++. | ...|+..-.-|.+
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHh
Confidence 5554 57778888888887654 322 24556788888888889999999999998753 1 1122221111111
Q ss_pred ------cCChhHHHHHHHHHHH--------------------CC-CCCC-HHHHHHHHHHHHhcCCc-ccccCHHHHHHH
Q 047873 212 ------ENRLDDAELLLHEMCE--------------------RG-LTPN-DVIFTTLIDGHCKNGRI-DMAGDMKEARKI 262 (464)
Q Consensus 212 ------~~~~~~a~~~~~~~~~--------------------~~-~~~~-~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~ 262 (464)
....+++.++-..... .+ ..+. ....+.+-..+....+. ............
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1112222222222111 10 0010 01111111111110000 000001222333
Q ss_pred HHHHHhCC---C----CCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 047873 263 VDEMCTNG---L----NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335 (464)
Q Consensus 263 ~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (464)
|+.-+.+- + +++..+|..-+..-...|+.+.+.-+|+...-.-.. -...|-..+......|+.+-|..++..
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 33333221 1 224457788888888999999999999888754211 335566666666666999999888887
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhCCC
Q 047873 336 MLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVE-TYNALMNGLCKHGQLKNAN---MLLDTMLDLGV 411 (464)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~ 411 (464)
..+-.++-.+.+-..-....-..|++..|..+++.+.+. . |+.. .-..-+....+.|..+.+. +++......
T Consensus 357 ~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-- 432 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-- 432 (577)
T ss_pred hhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--
Confidence 766543322222222222233468999999999999987 3 5432 2223345556778888777 444444332
Q ss_pred CCCHHHHHHHHH-----HHHhcCCHHHHHHHHHh-cCCCCc-hhHHHHhhccc
Q 047873 412 VPDDITYNILLE-----GHCKHGNPEDFDKLQSE-KGLVSD-YACYTSLVSKS 457 (464)
Q Consensus 412 ~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~-~~~~p~-~~~~~~ll~~~ 457 (464)
..+..+...+.- .+.-.++.+.|..++.+ ..+.|+ ...|-.+++.+
T Consensus 433 ~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 433 KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 223222222222 23346788889998887 455554 55555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.31 Score=40.74 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCCh
Q 047873 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291 (464)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 291 (464)
+-+++++++|...|+.||..+-..++.++.+.+-.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 46788899999999999999988889888776653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.92 Score=39.54 Aligned_cols=229 Identities=13% Similarity=0.111 Sum_probs=99.9
Q ss_pred HHhcCChhhHHHHHHHHhhCC--CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCC---HHHHHHHHHHHHh
Q 047873 139 LCKEGKIKDAQMVFDEFGKRG--LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS--GMRPD---VYTYSALINGLCK 211 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 211 (464)
+...++.++|+..+.+...+- ...-..++..+..+.++.|.+++++..--.-++. ..... ...|..+.+.+-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667776666554431 0111234555566666666666655432211110 00111 1223333334444
Q ss_pred cCChhHHHHHHHHHHHC-CCCC-CH--HHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC-----CCCCHHhHHHHH
Q 047873 212 ENRLDDAELLLHEMCER-GLTP-ND--VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-----LNPDKITYTILL 282 (464)
Q Consensus 212 ~~~~~~a~~~~~~~~~~-~~~~-~~--~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~ 282 (464)
.-++.+++.+-..-... |..| .. .....+..++...+ .++++++.|+.....- ......++..+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls------~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLS------VFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHH------HHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 44444444443333333 1111 01 11122222333322 2456666666654321 111223456666
Q ss_pred HHHHhCCChHHHHHHHHHHHHc----CCCCCHHHH-----HHHHHHHhccCChHHHHHHHHHHHH----CCCCC-CHhhH
Q 047873 283 DGFCKEGDLESALDIRKEMIKR----GIELDNVAF-----TALISGFCRGGKVVEAERMLREMLK----VGLKP-DDATY 348 (464)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~ 348 (464)
..|.+..++++|.-+..+..+. ++.--...| ..|..++...|...+|.+.-++..+ .|-++ -....
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 6666666666666554443321 221111112 2233345555666666665555433 22111 12233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 349 TMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 349 ~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
..+.+.|...|+.+.|+.-|+....
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHH
Confidence 4455666666666666666655544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.55 Score=37.25 Aligned_cols=94 Identities=13% Similarity=0.174 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHH
Q 047873 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA--VETYNALMNGLCKHGQLKNANMLLDTMLDL---GVVPDDITYNIL 421 (464)
Q Consensus 347 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l 421 (464)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.++... +-.++...--.+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455666667777777777777777666532222 334555666666677777776666665432 111111111111
Q ss_pred HH--HHHhcCCHHHHHHHHHh
Q 047873 422 LE--GHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 422 ~~--~~~~~g~~~~a~~~~~~ 440 (464)
.. ++...+++.+|.+.+-+
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHc
Confidence 11 23356778777776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.6 Score=38.14 Aligned_cols=166 Identities=10% Similarity=-0.020 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC-----CCChh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKH-YFRI---PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY-----SPSVY 130 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 130 (464)
+++..+.+++-+..++.+++.+-..-... |..+ .-.....+..+....+.++++++.|+...+... .....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 56666777777777777777776554333 1111 123345566777778889999999988776321 12345
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCCCcc-cHH-----HHHHHHHhcCChhHHHHHHHHHhh----CCCC
Q 047873 131 VFNVLMHKLCKEGKIKDAQMVFDEFGKR----GLHATAV-SFN-----TLINGHCKAKNLDEGFRLKSVMEG----SGMR 196 (464)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~-~~~-----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~ 196 (464)
++..|...|....|+++|.-+..+..+. ++. |.. -|. .+.-++...|.+..|.+.-++..+ .|-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 6788888899999988887665544321 211 111 122 233355567888778777766543 3322
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 197 P-DVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 197 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
+ .......+.+.|...|+.+.|..-|++..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 12334567778888899888888777654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.3 Score=32.58 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=68.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 047873 287 KEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366 (464)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 366 (464)
-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+. .|. ...|+......
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHH
Confidence 3466667777766666542 3334444443333333333333444333221 121 12333333333
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
.+-.+- .+.......+..+...|+-+.-.++++.+.+. -.+++..+..+..||.+.|+..++.+++++
T Consensus 78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 332221 24445566777788888888888888887653 467888888888888888888888888876
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.4 Score=40.69 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHh-----cCCCCChhhHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD-----YGYSPSVYVFNV 134 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 134 (464)
.++..++..+..+|+++.+...++.+...+ |-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 467778888888899999999999888887 66788888999999999999999888887654 578888887776
Q ss_pred HHHHH
Q 047873 135 LMHKL 139 (464)
Q Consensus 135 l~~~~ 139 (464)
.....
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 66663
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.51 E-value=3 Score=36.35 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--c----CChHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCC---
Q 047873 293 SALDIRKEMIKRGIELDNVAFTALISGFCR--G----GKVVEAERMLREMLKVGL---KPDDATYTMVIDCFCKNGD--- 360 (464)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~--- 360 (464)
+...+++.+.+.|+.-+..+|.+....... . ....+|..+++.|++... .++..++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344566677777766555555443222222 1 234567777777776531 1233344444333 2222
Q ss_pred -hHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047873 361 -TKTGFRLLKEMRSDGHLPAV--ETYNALMNGLCKHGQ--LKNANMLLDTMLDLGVVPDDITYNILL 422 (464)
Q Consensus 361 -~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~ 422 (464)
.+.+..+|+.+.+.|+..+- .....++..+..... ...+.++++.+.+.|+++....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 35556667777766555432 222333332222222 335667777777777776666555443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.049 Score=29.32 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARD 28 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~ 28 (464)
-|.++.+|+.|+.+|...|++++|++
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37899999999999999999999963
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.48 Score=39.68 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=27.5
Q ss_pred CHHhHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 047873 274 DKITYTILLDGFCK-----EGDLESALDIRKEMIKRGIELDNVAFTALISGFCR 322 (464)
Q Consensus 274 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (464)
|..+|...+..+.. .+..+-....++.|.+.|+.-|..+|..|++.+-+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 44555555555543 23444445555666666666666666666666543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.1 Score=28.49 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
|..|..+|.+.|++++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777777777777777777643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.83 Score=38.86 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=42.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCcCHHHHHHH
Q 047873 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-----GHLPAVETYNAL 386 (464)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l 386 (464)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+. |+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44455555555666666666666665554 345555666666666666666666666555442 555555544444
Q ss_pred HHH
Q 047873 387 MNG 389 (464)
Q Consensus 387 ~~~ 389 (464)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.99 E-value=1.2 Score=35.36 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC-ChhhHHH--
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP-SVYVFNV-- 134 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~-- 134 (464)
..+..++..|.+.|+.++|++.|.++......+. ...+..+++.....+++..+.....++...-... |....+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5777888889999999999999999877653333 4567788888888899988888877765432111 2222221
Q ss_pred H--HHHHHhcCChhhHHHHHHHHhh
Q 047873 135 L--MHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 135 l--~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
. .-.+...+++..|-+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1 1224457888888888876643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.94 E-value=7 Score=38.43 Aligned_cols=172 Identities=12% Similarity=0.046 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHH-hCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLV-AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
...++-.++.+|. .-.+++.|...+++.+.-... . +...-. ..-..++..+.+.+... |...++
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~----------~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~ 123 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER---H----------RLTDLKFRCQFLLARIYFKTNPKA-ALKNLD 123 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---c----------chHHHHHHHHHHHHHHHHhcCHHH-HHHHHH
Confidence 3455666777777 688899999999987632110 0 000000 22345567777776655 888888
Q ss_pred HHHhCCCC----CChhcHHHH-HHHHHcCCChhhHHHHHHHHHhcC---CCCChhhHHHHHHHHH--hcCChhhHHHHHH
Q 047873 84 LLRKHYFR----IPARGCRCL-IDRMMRTNLPTVTLGFYLEILDYG---YSPSVYVFNVLMHKLC--KEGKIKDAQMVFD 153 (464)
Q Consensus 84 ~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~ 153 (464)
+..+.--. +-...|..+ +..+...+++..|.+.++.+...- ..|...++..++.+.. ..+..+.+.+.++
T Consensus 124 ~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~ 203 (608)
T PF10345_consen 124 KAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQ 203 (608)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 86554211 222333433 233334479999999998877543 2233444445554443 4455677777776
Q ss_pred HHhhCC---------CCCCcccHHHHHHHHH--hcCChhHHHHHHHHHh
Q 047873 154 EFGKRG---------LHATAVSFNTLINGHC--KAKNLDEGFRLKSVME 191 (464)
Q Consensus 154 ~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 191 (464)
.+.... -.|...+|..+++.++ ..|++..+.+.++.+.
T Consensus 204 ~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 204 RAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 663321 1234456666666554 5777777776665553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.4 Score=33.01 Aligned_cols=124 Identities=15% Similarity=0.238 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047873 296 DIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG 375 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 375 (464)
+.++.+.+.+++|+...+..++..+.+.|++.....++ ..++-+|.......+-.+.. .+..+.++=-.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 34444555566666666666666666666654433333 33333444443333322221 222222222222221
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047873 376 HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433 (464)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 433 (464)
=...+..++..+...|++-+|.++.+..... +......++.+-.+.+|..-
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHH
Confidence 0012445556666667777776666554211 11122334555555555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.77 E-value=7.5 Score=38.27 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIV 34 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~ 34 (464)
...+.-+.+.|++++|...|-+.+
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHc
Confidence 344566778999999999999887
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.18 Score=28.50 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
..+++.|...|...|++++|++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 56899999999999999999999999873
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.65 E-value=7.6 Score=37.90 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=61.3
Q ss_pred HHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047873 16 FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL---PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 92 (464)
=+.+++.+++|+++-+... |..| ...++..++..+.-.|++++|-...-+|...
T Consensus 365 Wll~~k~yeeAl~~~k~~~-------------------~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---- 421 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI-------------------GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---- 421 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc-------------------CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----
Confidence 3556777888887766554 4444 2367777788888888888888877776654
Q ss_pred ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 047873 93 PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141 (464)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (464)
+...|...+..+...++......+ +.......++..|..++..+..
T Consensus 422 ~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 422 NAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 344566666666665554433222 2222222456677777766665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.89 E-value=2.1 Score=40.11 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=107.0
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcH
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGC 97 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 97 (464)
.-+|+++.|..++-.+. ....+.++..+.++|..++|+++-- |+..
T Consensus 597 vmrrd~~~a~~vLp~I~------------------------k~~rt~va~Fle~~g~~e~AL~~s~---------D~d~- 642 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP------------------------KEIRTKVAHFLESQGMKEQALELST---------DPDQ- 642 (794)
T ss_pred hhhccccccccccccCc------------------------hhhhhhHHhHhhhccchHhhhhcCC---------Chhh-
Confidence 35788888877554432 3456677888888898888887632 2211
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 047873 98 RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177 (464)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (464)
-.....+.|+.+.|.++..+. .+..-|..|..+....+++..|.+.|.... -|..|+-.+...
T Consensus 643 --rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~ 705 (794)
T KOG0276|consen 643 --RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSS 705 (794)
T ss_pred --hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhc
Confidence 223445678888888876654 367788999999999999999999887654 356677777788
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 178 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
|+-+....+-....+.|. .| .-..+|...|+++++.+++..-.
T Consensus 706 g~~~~l~~la~~~~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 706 GNAEGLAVLASLAKKQGK-NN-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred CChhHHHHHHHHHHhhcc-cc-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 887776666666766662 22 23345777899998888877653
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=92.72 E-value=10 Score=36.86 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047873 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
....+.+..+-+-.+......++..|.+.|-.+.+.++.+.+-.+-. ...-|..-+..+.+.|+...+..+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444433334455566666777777777777766665544322 22344444555555555555444444443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.66 E-value=6 Score=35.15 Aligned_cols=99 Identities=9% Similarity=-0.048 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHhCCC------------hHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKM------------HSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVY 69 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 69 (464)
-|.|+.+|-.++...-..-. .+.-+.+|++++ +. .|+. ..+..++..+
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL----------------~~---np~~~~L~l~~l~~~ 75 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERAL----------------KH---NPDSERLLLGYLEEG 75 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHH----------------Hh---CCCCHHHHHHHHHHH
Confidence 46789999888876554322 223334444444 32 4444 8888888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHc---CCChhhHHHHHHHHH
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR---TNLPTVTLGFYLEIL 121 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 121 (464)
.+..+.++..+-++++.... +-+...|...+..... .-.+.....+|.+.+
T Consensus 76 ~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 76 EKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 88888888888888888775 3356667766655443 234555666665544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.35 E-value=4.3 Score=31.63 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=64.8
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 047873 80 QCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (464)
+.+..+...+++++...+..++..+.+.|++....+++ ..++-+|.......+-.+ .+....+.++--+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 33444555566666667777777777777655544333 333334444333222111 22334444444444332
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
=...+..++..+...|++-+|.++.+..... +......++.+....+|...-..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113455666666777777777766654321 111223344555555554444444444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.14 E-value=4.1 Score=30.83 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=13.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
...+...|+|++|+.+|+.+...
T Consensus 51 g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 51 GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHcCCHHHHHHHHHhhhcc
Confidence 33455566666666666665554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.51 Score=25.09 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
.+|..++.+|...|++++|.+.|+++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999984
|
... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=14 Score=36.42 Aligned_cols=52 Identities=12% Similarity=-0.034 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV 112 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 112 (464)
..--....+....|+.++|......+-..| ...+..+..++..+.+.|....
T Consensus 130 ~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 130 EARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCH
Confidence 555566666777777777766666666555 3345566777766665555443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.7 Score=33.96 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCC-----------hhH
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGF-----------LDD 77 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~-----------~~~ 77 (464)
|..-+--+++-.+..++.++++.++++ +...+ .+.|+. .++..+..+|...+. +++
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK---------~eeAL---~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k 98 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISK---------FEEAL---KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEK 98 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHH---------HHHHH---HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHH---------HHHHH---hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 333333444455555666666666532 33333 457777 788888888766543 334
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 78 AIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 78 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
|.+.|++.... .|+...|+.-+... .+|-+++.++.+.+
T Consensus 99 A~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 99 ATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 44444444444 35666666665554 24555555555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.72 E-value=2.3 Score=33.89 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=9.9
Q ss_pred HHHhcCChhHHHHHHHHHhh
Q 047873 173 GHCKAKNLDEGFRLKSVMEG 192 (464)
Q Consensus 173 ~~~~~~~~~~a~~~~~~~~~ 192 (464)
+|.+...+++|+.-|..+..
T Consensus 177 ayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 44444455555555555444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.6 Score=40.24 Aligned_cols=53 Identities=8% Similarity=-0.063 Sum_probs=25.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 15 HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL-PGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+-|+++|.|++|++.|.+.+ ...| +...+..-..+|.+..++..|..-.....
T Consensus 105 N~yFKQgKy~EAIDCYs~~i-------------------a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI-------------------AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhh-------------------ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555555555555555544 3334 22444444555555555554444444433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=12 Score=34.35 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=72.9
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 54 GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
+-.|+...+... .+...|+++.+.+.+...... +.....+...+++...+.|++++|...-+-|+...++ ++....
T Consensus 320 ~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~ 395 (831)
T PRK15180 320 QQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLT 395 (831)
T ss_pred CCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-Chhhee
Confidence 334444333333 345679999999988766543 2334567888999999999999999999999988777 666655
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCC
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKRG 159 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (464)
......-..|-++++.-.+.++...+
T Consensus 396 iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 396 VAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred eecccHHHHhHHHHHHHHHHHHhccC
Confidence 55555566778888888888876554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.16 E-value=5.7 Score=30.59 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=26.8
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCcccHH-HHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFN-TLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
-...++.+.+..+++.+... .|...... .-...++..|+|.+|..+|+.+...
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 33455666666666665543 23322222 1223345566666666666665544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.69 Score=24.58 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 382 TYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 382 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.06 E-value=1.2 Score=30.49 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047873 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422 (464)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 422 (464)
.=+..+-++.+......|++....+.+++|.+.+++..|.++|+-.+.. ...+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 3345555666666667788888888888888888888888888766632 122344555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=90.84 E-value=9.2 Score=32.42 Aligned_cols=137 Identities=9% Similarity=0.054 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCChhH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-------LVLDALMIVYVDLGFLDD 77 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~ 77 (464)
+-+.-...-...+.-+.+|..|++..++.++.-+.. .. .-++.. ..-..=|.++...|+|.+
T Consensus 33 ~a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~---------a~--~ee~~~~~~evK~sLcvvGIQALAEmnrWre 101 (309)
T PF07163_consen 33 PAVSLLEEAADLLVVHRDFQAALETCERGLQSLASD---------AD--AEEPAGSSLEVKCSLCVVGIQALAEMNRWRE 101 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------cc--ccccccchhhhhhhhhhhhHHHHHHHhhHHH
Confidence 333444445556667788888888888776432100 00 000000 011122445666666666
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH-----hcCChhhHHHHH
Q 047873 78 AIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC-----KEGKIKDAQMVF 152 (464)
Q Consensus 78 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 152 (464)
++.+.-+.-+..-..++.....-|-.|.+.+.+..+.++-..-++.-...+..-|.+++..|. -.|.+++|+++.
T Consensus 102 VLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 102 VLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 665544333222122344444445556666666666655555444322222333444444333 346666666555
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.74 E-value=5.4 Score=32.01 Aligned_cols=77 Identities=18% Similarity=0.061 Sum_probs=46.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHH
Q 047873 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD---LGVVPDDITYNILLEGHCKHGNPED 433 (464)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~ 433 (464)
+.|+ +.|.+.|-.+...+..-++...-.+...|. ..+.+++..++-+..+ .+-.+|+..+.+|+..+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 566666666666544445555555554444 4566777777666653 2235667777777777777777776
Q ss_pred HH
Q 047873 434 FD 435 (464)
Q Consensus 434 a~ 435 (464)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.59 Score=24.77 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
+|..+...+...|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 56667777888888888888888776653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.57 E-value=20 Score=35.85 Aligned_cols=229 Identities=15% Similarity=0.069 Sum_probs=123.6
Q ss_pred HHHHcCCChhhHHHHHHHHHhcCCCCChh-------hHHHHH-HHHHhcCChhhHHHHHHHHhhC----CCCCCcccHHH
Q 047873 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVY-------VFNVLM-HKLCKEGKIKDAQMVFDEFGKR----GLHATAVSFNT 169 (464)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 169 (464)
-......++.+|..+..++...-..|+.. .++.+- ......|+++.|.++.+..... -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 34456788899988888877644333322 222222 2344578889998888776554 11223445666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH-----HHHHHhcCCh--hHHHHHHHHHHHCC---CC---CCHHH
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL-----INGLCKENRL--DDAELLLHEMCERG---LT---PNDVI 236 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~ 236 (464)
+..+..-.|++++|..+.....+..-.-+...+..+ ...+...|+. .+.+..|....... .+ +-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 777778889999999888776644222333333322 2335556743 33334444433321 01 12234
Q ss_pred HHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhCCChHHHHHHHHHHHHcCCC----CCH
Q 047873 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT--YTILLDGFCKEGDLESALDIRKEMIKRGIE----LDN 310 (464)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 310 (464)
+..+..++.+.. +...++..-++-.......|-... +..|+......|++++|...++++...... ++.
T Consensus 583 r~~ll~~~~r~~-----~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 583 RAQLLRAWLRLD-----LAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHHHHh-----hhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 444555554421 111233333333222222232222 236788888999999999998888765332 222
Q ss_pred HHHHHHHH--HHhccCChHHHHHHHHH
Q 047873 311 VAFTALIS--GFCRGGKVVEAERMLRE 335 (464)
Q Consensus 311 ~~~~~l~~--~~~~~~~~~~a~~~~~~ 335 (464)
.+-...+. .....|+...+...+.+
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222222 23456788777776665
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=5.2 Score=36.56 Aligned_cols=125 Identities=13% Similarity=0.070 Sum_probs=71.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 047873 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT 361 (464)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 361 (464)
|.--...|+.-.|.+-+...++.... ++.........+...|+++.+...+...... +.....+...+++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQ-DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33344556666665544444433221 2333333334456677777777776655432 223445666777777777777
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 362 KTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
+.|...-..|....+. ++.........-...|-++++.-.|++....
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 7777777777666544 4554444444445566677777777776643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.40 E-value=8.8 Score=36.31 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMR 372 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 372 (464)
.-|..|..+..+.+++..|.+.|.+..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 344455555555555555555544443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.55 Score=24.64 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSK 36 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 36 (464)
++..++.++...|++++|.+.|++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5667888999999999999999999854
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.28 E-value=3.8 Score=32.88 Aligned_cols=72 Identities=14% Similarity=0.017 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHhcCCHHHH
Q 047873 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD---GHLPAVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 399 (464)
+.|...|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554443333444444444333 45556666666555544 2245566666666666666666555
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=12 Score=32.51 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=33.4
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHHH
Q 047873 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL----DDAELLLHEMCERGLTPNDVIF 237 (464)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 237 (464)
++..+....+.++...|. +.+...+..+.. .++...-...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 344455555555554443 223333333322 22444444444444555442 2344444444222 2344444
Q ss_pred HHHHHHHHhc
Q 047873 238 TTLIDGHCKN 247 (464)
Q Consensus 238 ~~l~~~~~~~ 247 (464)
...+.++...
T Consensus 109 ~~A~~aLG~~ 118 (280)
T PRK09687 109 ASAINATGHR 118 (280)
T ss_pred HHHHHHHhcc
Confidence 4444444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.99 E-value=2 Score=29.87 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=18.5
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
...-+..+...++.|++.+..+.+.+|.+.+++..|.++|+.++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.85 E-value=9.5 Score=31.02 Aligned_cols=201 Identities=16% Similarity=0.059 Sum_probs=104.3
Q ss_pred HHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC
Q 047873 50 LETRGTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP 127 (464)
Q Consensus 50 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 127 (464)
+.+.+..++. .....-...|-..|-+.-|+--|....... |--+.+|+.++--+...|+++.|.+.|+...+..+.-
T Consensus 54 L~~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y 132 (297)
T COG4785 54 LASRALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 132 (297)
T ss_pred HHhccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc
Confidence 3333444444 233333444555566666666666555543 2236678888888888888888888888888766542
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHH-HHHHHhcCChhHHHH-HHHHHhhCCCCCCHHHHHH-
Q 047873 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTL-INGHCKAKNLDEGFR-LKSVMEGSGMRPDVYTYSA- 204 (464)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~- 204 (464)
+-...|.-+ ++---|++.-|.+=|...-+.+ |+. .|.++ +-.--..-+..+|.. +.++..+. |..-|..
T Consensus 133 ~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D--~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~ 204 (297)
T COG4785 133 NYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD--PND-PFRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWN 204 (297)
T ss_pred hHHHhccce-eeeecCchHhhHHHHHHHHhcC--CCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHH
Confidence 322223222 3344677888877666655542 222 12222 222223345555554 33444432 3222322
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 205 LINGLCKENRLDDAELLLHEMCERGLTPN-------DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
++..|...=.. ..+++.+... -..+ ..+|-.+.+.+...|+. .+|..+|+-.+..
T Consensus 205 iV~~yLgkiS~---e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~------~~A~~LfKLaian 266 (297)
T COG4785 205 IVEFYLGKISE---ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDL------DEATALFKLAVAN 266 (297)
T ss_pred HHHHHHhhccH---HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccH------HHHHHHHHHHHHH
Confidence 22223222111 2233333321 1111 34566667777777765 5999999887764
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.77 E-value=23 Score=35.41 Aligned_cols=224 Identities=17% Similarity=0.119 Sum_probs=119.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH----H---HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC----CCCCHHh
Q 047873 209 LCKENRLDDAELLLHEMCERGLTPND----V---IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG----LNPDKIT 277 (464)
Q Consensus 209 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 277 (464)
.....++++|..++.++...-..|+. . .++.+ .+....++ ++++.|.++.+.....- ..+....
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL-~a~val~~----~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQAL-RAQVALNR----GDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHH-HHHHHHhc----CCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 34568899999999887655222221 1 23322 22222222 34578888877776542 2234455
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH---H--HHHHhccCChH--HHHHHHHHHHHCC--CC----CC
Q 047873 278 YTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTA---L--ISGFCRGGKVV--EAERMLREMLKVG--LK----PD 344 (464)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~~~~~--~a~~~~~~~~~~~--~~----~~ 344 (464)
+..+..+..-.|++++|..+..+..+.....+...+.. + ...+...|... +....+....... -. +-
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 67777888888999999998887766532333333322 2 22345566322 2333333332210 01 12
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CC
Q 047873 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GHLPAVETY--NALMNGLCKHGQLKNANMLLDTMLDLGVV----PD 414 (464)
Q Consensus 345 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----p~ 414 (464)
..++..++.++.+ ++.+..-...-.+. ...|-.... ..|+......|+.++|...++++...... ++
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 2344555555554 33333332222222 112222222 35677888899999999999888753222 23
Q ss_pred HHHHHHHHHH--HHhcCCHHHHHHHHHh
Q 047873 415 DITYNILLEG--HCKHGNPEDFDKLQSE 440 (464)
Q Consensus 415 ~~~~~~l~~~--~~~~g~~~~a~~~~~~ 440 (464)
...-...+.. ....|+.+++...+.+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 3322223322 2377888887777665
|
|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.74 E-value=23 Score=35.36 Aligned_cols=300 Identities=10% Similarity=0.009 Sum_probs=146.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047873 15 HFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92 (464)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 92 (464)
+.|...|+|++|++.-+. .|+. .++..-+..|.+.+++..|-+++.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~-----------------------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~------ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART-----------------------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL------ 416 (911)
T ss_pred HHHHhcchHHHHHHhccC-----------------------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh------
Confidence 345568888888886432 2333 555667778889999999999998762
Q ss_pred ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH-----HHHHHH-hcCChh----hHHHHHHHHh------
Q 047873 93 PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV-----LMHKLC-KEGKIK----DAQMVFDEFG------ 156 (464)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~-~~~~~~----~a~~~~~~~~------ 156 (464)
..+..+.--+...++.+.-..++.+=++ ...|...+-.. ++..|. +.++.+ ++..-++.-.
T Consensus 417 --~~FEEVaLKFl~~~~~~~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re 493 (911)
T KOG2034|consen 417 --SSFEEVALKFLEINQERALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQRE 493 (911)
T ss_pred --hhHHHHHHHHHhcCCHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHH
Confidence 2345555555555655533333333332 22233222222 222222 233332 2222211110
Q ss_pred --hC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047873 157 --KR-GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233 (464)
Q Consensus 157 --~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 233 (464)
.. ...-+.....+....+...|+.+....+-..+. .|..++..+...+.+++|++++..-. +
T Consensus 494 ~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~------~ 558 (911)
T KOG2034|consen 494 FSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR------N 558 (911)
T ss_pred HHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc------c
Confidence 00 001122334444455556666666666555544 25667888888888888888876642 2
Q ss_pred HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCH
Q 047873 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEG---DLESALDIRKEMIKRGIELDN 310 (464)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~ 310 (464)
.......-..+...- +.+....+..... ..+......++..+.+.+ ....+...++-....-..-++
T Consensus 559 ~el~yk~ap~Li~~~-------p~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~ 628 (911)
T KOG2034|consen 559 PELFYKYAPELITHS-------PKETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNP 628 (911)
T ss_pred hhhHHHhhhHHHhcC-------cHHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCH
Confidence 222222222222211 1233333333222 122333444454444442 334445554444443333477
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC------hHHHHHHHHHHHh
Q 047873 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGD------TKTGFRLLKEMRS 373 (464)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~ 373 (464)
..++.++..|++..+- .....++.....+-. ...-....++.|.+.+. ...+.++|.++++
T Consensus 629 ~ihn~ll~lya~~~~~-~ll~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVd 695 (911)
T KOG2034|consen 629 AIHNSLLHLYAKHERD-DLLLYLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVD 695 (911)
T ss_pred HHHHHHHHHhhcCCcc-chHHHHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHH
Confidence 8888888888776553 333334333332111 22223444555555543 3444455555544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.69 E-value=21 Score=34.68 Aligned_cols=277 Identities=12% Similarity=0.047 Sum_probs=158.7
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHH-----HHhcCChhhHHHHHHHHhh-------CCCCCCcccHHHHHHHHHhc
Q 047873 110 PTVTLGFYLEILDYGYSPSVYVFNVLMHK-----LCKEGKIKDAQMVFDEFGK-------RGLHATAVSFNTLINGHCKA 177 (464)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 177 (464)
...+.++++...+.| +......+..+ +....+++.|+..|..... .+ ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456888888887766 33333333333 3355788999999988866 44 344566677777764
Q ss_pred C-----ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047873 178 K-----NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK-ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251 (464)
Q Consensus 178 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (464)
. +...|..++...-+.| .|+.......+..... ..+...|.++|....+.|.. ..+-.+..+|. .| ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~-~G-~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYE-LG-LG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHH-hC-CC
Confidence 3 6677999998888876 4555444333333222 24577999999999888743 23333333333 23 22
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H---hc----c
Q 047873 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISG-F---CR----G 323 (464)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~---~~----~ 323 (464)
...+...|..++++....|. |...--...+..+.. +.++.+.-.+..+...+.. ...+-...+.. . .. .
T Consensus 376 v~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~ 452 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVI 452 (552)
T ss_pred cCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccc
Confidence 24567899999999988873 332222222333333 7777777777666666543 22222221111 1 11 2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH----hcCC
Q 047873 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN----GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC----KHGQ 395 (464)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~ 395 (464)
.+...+...+.+....| +......+...|..- .+++.|...+......+ ....-.+...+- ...
T Consensus 453 ~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~- 524 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV- 524 (552)
T ss_pred cchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-
Confidence 25566677777766654 445555555554432 45778888887777753 222222332222 123
Q ss_pred HHHHHHHHHHHHhC
Q 047873 396 LKNANMLLDTMLDL 409 (464)
Q Consensus 396 ~~~a~~~~~~~~~~ 409 (464)
+..|.++++...+.
T Consensus 525 ~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 525 LHLAKRYYDQASEE 538 (552)
T ss_pred hHHHHHHHHHHHhc
Confidence 67777777776653
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.64 E-value=1.1 Score=38.64 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=58.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
.+-|.++|++++|+++|.+..... +.++..+..-..+|.+.+.+..|..-++.++..+-. -..+|+.-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhH
Confidence 445888888888888888776664 346667777777888888888777766666543211 233444444444445556
Q ss_pred hhHHHHHHHHhhC
Q 047873 146 KDAQMVFDEFGKR 158 (464)
Q Consensus 146 ~~a~~~~~~~~~~ 158 (464)
.+|.+=++...+.
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 6666655555544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.56 E-value=21 Score=34.61 Aligned_cols=273 Identities=14% Similarity=0.044 Sum_probs=154.3
Q ss_pred hhHHHHHHHHHHhCCCCCChhcHHHHHHH-----HHcCCChhhHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhc
Q 047873 75 LDDAIQCFRLLRKHYFRIPARGCRCLIDR-----MMRTNLPTVTLGFYLEILD-------YGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 142 (464)
...|.+.++.....| +......++.+ .....+.+.|+..+..+.+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888998888876 22222222222 3356789999999999877 44 444666778888775
Q ss_pred C-----ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh-cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hc
Q 047873 143 G-----KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC----KE 212 (464)
Q Consensus 143 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 212 (464)
. +...|..++...-..| .|+....-..+..... ..+...|.++|...-+.|.. .. +-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A--~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LA--IYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HH--HHHHHHHHHhCCCcC
Confidence 4 5667999999888876 3444433333222222 24678999999999988732 32 222333322 23
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHH-HH---HHh-
Q 047873 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL-DG---FCK- 287 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~- 287 (464)
.+...|..++.+..+.| .|....-...+..+.. +++ ..+...+..+...+.. ...+-...+ .. ...
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~------~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~ 448 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY------DTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFS 448 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc------cHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccc
Confidence 46789999999999887 2232222223333333 444 3555555555544432 111111111 11 111
Q ss_pred ---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---
Q 047873 288 ---EGDLESALDIRKEMIKRGIELDNVAFTALISGFCR----GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK--- 357 (464)
Q Consensus 288 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 357 (464)
..+...+...+......| +......+...|.. ..+++.|...+......+ ....-.+..++-.
T Consensus 449 ~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g 521 (552)
T KOG1550|consen 449 RGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEG 521 (552)
T ss_pred cccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcC
Confidence 124455566666665554 34455555544433 245777888887776654 3333333333322
Q ss_pred -cCChHHHHHHHHHHHhC
Q 047873 358 -NGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 358 -~~~~~~a~~~~~~~~~~ 374 (464)
.+ +..|.++++.....
T Consensus 522 ~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 522 IKV-LHLAKRYYDQASEE 538 (552)
T ss_pred cch-hHHHHHHHHHHHhc
Confidence 23 67888888887775
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.21 Score=38.14 Aligned_cols=128 Identities=17% Similarity=0.171 Sum_probs=78.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 047873 316 LISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQ 395 (464)
Q Consensus 316 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (464)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++ .. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~----~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS----NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS----SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc----cccCHHHHHHHHHhcch
Confidence 456666777777777888887766545567777888888888877677776665 11 11223456677777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchhHHHHhhccchhhhh
Q 047873 396 LKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLVSDYACYTSLVSKSSKYRQ 462 (464)
Q Consensus 396 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 462 (464)
++++.-++.++-... . .+..+...+++++|.++..+ .++...|..+++.|...++
T Consensus 86 ~~~a~~Ly~~~~~~~---~------al~i~~~~~~~~~a~e~~~~---~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---E------ALEILHKLKDYEEAIEYAKK---VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHT---T------CSSTSSSTHCSCCCTTTGGG---CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHH---H------HHHHHHHHccHHHHHHHHHh---cCcHHHHHHHHHHHHhcCc
Confidence 777777776643211 0 11113345666666655554 4557888888877766544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.52 E-value=1.1 Score=25.02 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 381 ETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456667777777777777777776665
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.41 E-value=5.3 Score=27.53 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
+.-++.+-++.+...++.|++.+..+.+++|.+.+++..|.++|+.++.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44556666666666677777777777777777777777777777766643
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.28 E-value=11 Score=31.02 Aligned_cols=221 Identities=20% Similarity=0.121 Sum_probs=105.1
Q ss_pred CChhHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcccccC
Q 047873 178 KNLDEGFRLKSVMEGSGMR-PDVYTYSALINGLCKENRLDDAELLLHEMCER-GLTPNDVIFTTLIDGHCKNGRIDMAGD 255 (464)
Q Consensus 178 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~ 255 (464)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 111 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY----- 111 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH-----
Confidence 4444455555544433211 12445555666666666666666666665542 1122334444444444444433
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHH-HHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCChHHHHHH
Q 047873 256 MKEARKIVDEMCTNGLNPDKITYTILLD-GFCKEGDLESALDIRKEMIKRGI--ELDNVAFTALISGFCRGGKVVEAERM 332 (464)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (464)
..+...+.........+ ......... ++...|+++.+...+........ ......+......+...++.+.+...
T Consensus 112 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 112 -EEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred -HHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 46666666665543222 111222222 45566666666666666544211 01222233333334455566666666
Q ss_pred HHHHHHCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 333 LREMLKVGLKP-DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPA-VETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 333 ~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
+....... +. ....+..+...+...++++.+...+...... .|+ ...+..+...+...+..+++...+.....
T Consensus 190 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 190 LEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66655542 11 2344555555555555566666666555553 122 22333333333344455555555555543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.26 E-value=7.7 Score=35.68 Aligned_cols=108 Identities=14% Similarity=-0.047 Sum_probs=68.2
Q ss_pred HHHhccCChHHHHHHHHHHHH---CCCCCCH-----hhHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCcCH--
Q 047873 318 SGFCRGGKVVEAERMLREMLK---VGLKPDD-----ATYTMVIDCFCKNGDTKTGFRLLKEMRS-------DGHLPAV-- 380 (464)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-- 380 (464)
+.+.-.|++.+|.+++-..-- .|...+. ..+|.+.-.+.+.|.+..+..+|.+... .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 344567888888887755321 1211121 1235555556666777777777766653 2444321
Q ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047873 381 ---------ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK 427 (464)
Q Consensus 381 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 427 (464)
.+|| ..-.|...|++-.|.+.|.+...- +..++..|-.+..+|..
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2343 344577889999999999888763 56789999999998873
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.21 E-value=3.5 Score=33.38 Aligned_cols=75 Identities=16% Similarity=0.008 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC--CChhhHHHHHHH
Q 047873 63 DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS--PSVYVFNVLMHK 138 (464)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 138 (464)
+..+..+.+.++.++|+...+.-++.. |.+......++..+|-.|++++|..-++-.-+..+. +-..+|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556677788888888887776664 456667788888888888888888777766554322 334556666654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.04 E-value=0.65 Score=23.00 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLH 31 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~ 31 (464)
.+...+...+...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356778899999999999999876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.77 E-value=10 Score=31.38 Aligned_cols=86 Identities=7% Similarity=-0.096 Sum_probs=50.3
Q ss_pred HHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 047873 16 FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 94 (464)
-|.....+..|+..|.+++ -+.|+. .-|..-+..+.+..+++.+..--.+..+.. +...
T Consensus 19 k~f~~k~y~~ai~~y~raI-------------------~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~v 78 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI-------------------CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLV 78 (284)
T ss_pred cccchhhhchHHHHHHHHH-------------------hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHH
Confidence 3444455666666666666 455665 555555666666666666666555555543 2233
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHH
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEIL 121 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 121 (464)
.....+...+.....+++|+..+.+..
T Consensus 79 k~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 79 KAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 444555566666666677766666654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.66 E-value=1.2 Score=23.53 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666777778888888888888776654
|
... |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.49 E-value=31 Score=35.09 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
|..|+..|...|+.++|++++.....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 67788888888888888888888764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.35 E-value=9.4 Score=28.97 Aligned_cols=55 Identities=11% Similarity=-0.193 Sum_probs=35.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
-...++++++..+++.+.-.. |-....-..-...+...|++.+|..+++.+.+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 345778888888888776653 2222333333445667788888888888887654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.13 E-value=36 Score=35.44 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 047873 418 YNILLEGHCKHGNPEDFDKL 437 (464)
Q Consensus 418 ~~~l~~~~~~~g~~~~a~~~ 437 (464)
...|+.++...|..++|.++
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~L 1206 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARAL 1206 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHH
Confidence 34556666666666665554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=87.99 E-value=0.93 Score=23.06 Aligned_cols=28 Identities=7% Similarity=-0.026 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
.+|..++.++...|++++|...|+..++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999999873
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.66 E-value=14 Score=31.92 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 047873 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVG---LKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385 (464)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 385 (464)
...+...++..-....+++.+...+-+++... ..|+. +-...++.+ -.-++++++.++..=+.-|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHH
Confidence 44444455554455666677776666665431 01111 111122222 12345566666666666677777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 047873 386 LMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 386 l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
+++.+.+.+++.+|.++.-.|.
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHH
Confidence 7777777777777766665554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.63 E-value=9.9 Score=32.82 Aligned_cols=103 Identities=23% Similarity=0.322 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC
Q 047873 194 GMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG---LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270 (464)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 270 (464)
|......+...++.......+++.+...+-++.... ..|+.. -..+++.+.+. +.+.++.++..-++.|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllky-------~pq~~i~~l~npIqYG 130 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLKY-------DPQKAIYTLVNPIQYG 130 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHcc-------ChHHHHHHHhCcchhc
Confidence 334455555555555555667777777777765541 111111 12233333332 2357777777777788
Q ss_pred CCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047873 271 LNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304 (464)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (464)
+-||..+++.++..+.+.+++..|..+.-.|...
T Consensus 131 iF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 131 IFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888888887776666554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.62 E-value=55 Score=37.04 Aligned_cols=63 Identities=13% Similarity=-0.003 Sum_probs=51.0
Q ss_pred HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCC
Q 047873 275 KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340 (464)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (464)
..+|....+...+.|+++.|...+-...+.+ -+..+.-.+....+.|+...|+.++++.....
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4568888888888999999998877777765 23667777888889999999999999988653
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.16 E-value=18 Score=30.97 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH--------HHHHHHhcCCCCchhHH
Q 047873 382 TYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED--------FDKLQSEKGLVSDYACY 450 (464)
Q Consensus 382 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--------a~~~~~~~~~~p~~~~~ 450 (464)
+++.....|..+|.+.+|.++.++.+..+ +.+...+..++..+...|+--. |..+..+.|+.-+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 45566788999999999999999998753 4477888888999999998333 34444457887765543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.08 E-value=0.94 Score=23.68 Aligned_cols=27 Identities=41% Similarity=0.513 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
+-.++.++.+.|++++|++.|+++...
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334566677777777777777777665
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.96 E-value=33 Score=33.82 Aligned_cols=151 Identities=7% Similarity=0.052 Sum_probs=92.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC---ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRI---PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
++.+.+.+.+++|++.-+..... .+ ........+..+...|++++|-...-+|.. -+...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 45677889999999987764433 33 345677888888999999999998888875 3667777777777777
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh---------hCCC-------CCCHHHHHHHH
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME---------GSGM-------RPDVYTYSALI 206 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~-------~~~~~~~~~l~ 206 (464)
++......+ ++......+..+|..++..+.. .+...-.++...-. .... .-+...-..|+
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 765443332 2222222456778888877766 22222111111100 0000 11122234477
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 047873 207 NGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~~~ 226 (464)
..|...+++..|+.++-.+.
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77888888888888877765
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.84 E-value=16 Score=30.14 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=92.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 047873 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN 358 (464)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 358 (464)
..-+..|.+.-++.-|....+++.+. ..+-.+++ -|.+..+..--..+.+-....+++.+..-+..++ +...
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiEP-----IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIEP-----IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhhh-----HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhcc
Confidence 33455666666666666665555441 22222322 3455555444444444445555555555544443 4567
Q ss_pred CChHHHHHHHHHHHhC-C-----------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047873 359 GDTKTGFRLLKEMRSD-G-----------HLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHC 426 (464)
Q Consensus 359 ~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (464)
||..+|+.-++.-... | -.|.+.....++..|.. +++++|.+.+.++-+.|+.|... .+.+.+++-
T Consensus 206 GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred chHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 8888888887765442 1 24777778888887655 68999999999999999887554 344555554
Q ss_pred hcCCHHHHH--HHHHhcCC
Q 047873 427 KHGNPEDFD--KLQSEKGL 443 (464)
Q Consensus 427 ~~g~~~~a~--~~~~~~~~ 443 (464)
... ..|-. +++++.|+
T Consensus 284 ~~~-~~E~~rlE~ikeig~ 301 (333)
T KOG0991|consen 284 NMD-VAESLRLEFIKEIGL 301 (333)
T ss_pred hcc-HHHHHHHHHHHHHhh
Confidence 433 55544 55666543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=86.84 E-value=2.7 Score=27.67 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=40.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 12 TMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
..+.+| ...+..+|+..+++++++. ..+++. .++..++.+|...|++.++++.-
T Consensus 12 ~GlkLY-~~~~~~~Al~~W~~aL~k~----------------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 12 KGLKLY-HQNETQQALQKWRKALEKI----------------TDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhhc----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 6778888888888888542 223333 78889999999999999988864
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.71 E-value=8.7 Score=26.85 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047873 257 KEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318 (464)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (464)
-+..+-+..+....+.|++.+..+.+++|.+.+++..|.++++.+..+--. ....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~-~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN-KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-hHHHHHHHHH
Confidence 356666666666667777777777778888888888888877777655221 2225555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.87 E-value=69 Score=36.38 Aligned_cols=318 Identities=11% Similarity=0.052 Sum_probs=165.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFR--IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (464)
.+..+-.+++.+.+|+-.+++-.....+ .....+..+...|...++++....+...-. .+...+.. +.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~q-il~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQ-ILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHH-HHHHHh
Confidence 5566777899999999999984211111 112233444448889999998877766421 24444443 446778
Q ss_pred cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhcCChhHHHH
Q 047873 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA-LINGLCKENRLDDAEL 220 (464)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 220 (464)
.|++..|...|+.+.+.+ ++....++-++......|.+..+.-..+-..... .+....++. =+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 3446778877777777777777776555554331 222333332 2334467778877776
Q ss_pred HHHHHHHCCCCCCHHHHHH--HHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC--------C-HHhHHHHHHHHHhCC
Q 047873 221 LLHEMCERGLTPNDVIFTT--LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP--------D-KITYTILLDGFCKEG 289 (464)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~-~~~~~~l~~~~~~~~ 289 (464)
.+. +. +..+|.. +.....+..+.|. -.-....+.+...-+.| + ...|..++..+.-..
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~----~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDE----IATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccch----hhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 665 22 2222322 3333333333221 11112222222211111 0 012222222221110
Q ss_pred ChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCChHHHHHHHHH-HHHCCCCC-----CHhhHHHHHHHHHh
Q 047873 290 DLESALDIRKEMIKRGIELDN------VAFTALISGFCRGGKVVEAERMLRE-MLKVGLKP-----DDATYTMVIDCFCK 357 (464)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~-----~~~~~~~ll~~~~~ 357 (464)
-....+... +..++. .-|..-+..-....+..+-+--+++ +......| -..+|....+....
T Consensus 1609 ----l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~ 1682 (2382)
T KOG0890|consen 1609 ----LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL 1682 (2382)
T ss_pred ----HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh
Confidence 000111111 111111 1122222111111111111111111 11111111 23567778888888
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047873 358 NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL 409 (464)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 409 (464)
.|+++.|...+-.+.+.+ -+..+-..+..+...|+-..|+.++++.++.
T Consensus 1683 aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999999888777776653 3345566777788899999999999888753
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=85.83 E-value=21 Score=30.41 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
..+..-.+.+.-..+|..|++..++..+
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglq 63 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQ 63 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666788888887776543
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.36 E-value=0.56 Score=35.77 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=26.6
Q ss_pred HHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 047873 101 IDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153 (464)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 153 (464)
+..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444455555555555555544434445555555555555555555555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.31 E-value=9 Score=31.17 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=28.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 282 LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
+..+.+.+...+++...++-++..+. |..+-..+++.++-.|++++|..-++-.-+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 34444555555555555554444332 444444555555555555555555444433
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.18 E-value=27 Score=31.08 Aligned_cols=118 Identities=10% Similarity=0.001 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh---cCChhHHHHHH
Q 047873 111 TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK---AKNLDEGFRLK 187 (464)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 187 (464)
+.-+.+++++++.++ .+...+...+..+.+..+.+...+-++++.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 445667777777654 366667777777777777777777777777653 2245566666555443 22355555555
Q ss_pred HHHhhC------CC----CCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047873 188 SVMEGS------GM----RPDV-------YTYSALINGLCKENRLDDAELLLHEMCERGL 230 (464)
Q Consensus 188 ~~~~~~------~~----~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 230 (464)
.+..+. +. .+.. ..+..+......+|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 554321 11 1111 1233344455678999999999999988754
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=84.94 E-value=10 Score=26.05 Aligned_cols=32 Identities=25% Similarity=0.121 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
|.+..+...+...+...|++++|++.+-.++.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45666777777777777777777777777764
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.31 E-value=27 Score=30.33 Aligned_cols=79 Identities=10% Similarity=-0.013 Sum_probs=39.1
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCh----hHHHHHHHHHhhCCCCCCHHHH
Q 047873 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL----DEGFRLKSVMEGSGMRPDVYTY 202 (464)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 202 (464)
+|.......+..+...|. +.+...+..+.. .+|...-...+.++...|+. .++...+..+... .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455566666666666664 233333333333 23555555556666666653 3455555554322 3444444
Q ss_pred HHHHHHHHh
Q 047873 203 SALINGLCK 211 (464)
Q Consensus 203 ~~l~~~~~~ 211 (464)
...+.++..
T Consensus 109 ~~A~~aLG~ 117 (280)
T PRK09687 109 ASAINATGH 117 (280)
T ss_pred HHHHHHHhc
Confidence 444444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.30 E-value=31 Score=31.04 Aligned_cols=63 Identities=22% Similarity=0.181 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIEL---DNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
.++..++..+.+.|.++.|...+..+...+... .+......+...-..|+..+|...++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555666666666666655555432111 223333344444555555666665555554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.10 E-value=20 Score=30.54 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 047873 203 SALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 203 ~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
..++..+.+.|.+.+|+.+...+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 357788899999999998776554
|
|
| >KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.99 E-value=40 Score=35.07 Aligned_cols=172 Identities=9% Similarity=-0.002 Sum_probs=106.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHH--------hcCCCCCh-----hhHHHHHHHHHhcCChhHH
Q 047873 12 TMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILE--------TRGTHLPG-----LVLDALMIVYVDLGFLDDA 78 (464)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-----~~~~~l~~~~~~~g~~~~A 78 (464)
.++.+|..-|...+|+..|.++.+..| +...+...+.. ..|..|.. .-|..+++.+-+.+-.+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~g--e~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~v 1002 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFG--EGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEV 1002 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccc--cHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHH
Confidence 445568889999999999999975444 44455555555 23433333 3467888899999999999
Q ss_pred HHHHHHHHhCCC--CCC-hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh----HHHHHHHHHhcCChhh----
Q 047873 79 IQCFRLLRKHYF--RIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV----FNVLMHKLCKEGKIKD---- 147 (464)
Q Consensus 79 ~~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~---- 147 (464)
.++-....+.-. .|+ +..++.+.......|.+.+|...+-.- ||... ...++-.+..+|.++.
T Consensus 1003 cQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdcLRqlvivLfecg~l~~L~~f 1076 (1480)
T KOG4521|consen 1003 CQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDCLRQLVIVLFECGELEALATF 1076 (1480)
T ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHhccchHHHhhC
Confidence 888776655410 122 344667777777888887776554322 44433 3456666777777643
Q ss_pred --------HHH-HHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHH-HHHHh
Q 047873 148 --------AQM-VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVME 191 (464)
Q Consensus 148 --------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~ 191 (464)
... +++...+.........|+.|-..+...+++.+|-.+ |+...
T Consensus 1077 pfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyam 1130 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAM 1130 (1480)
T ss_pred CccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 333 333333332222344577777777788888887654 55443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.93 E-value=2.4 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=20.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
.+..+|...|+.+.|+++++.+...+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888888888888888887654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=83.72 E-value=27 Score=29.99 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHhc-cC-ChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCcCHHHHH
Q 047873 309 DNVAFTALISGFCR-GG-KVVEAERMLREMLKV-GLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-GHLPAVETYN 384 (464)
Q Consensus 309 ~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 384 (464)
|..+...+++.... .+ ....-.++.+-+... +-.++..+...++..++..+++.+-.+++...... +..-|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 55555555555544 11 222222223333221 23455666666677777777777777766666554 4444666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH-----HhCCCCCCHHHHHHHHH
Q 047873 385 ALMNGLCKHGQLKNANMLLDTM-----LDLGVVPDDITYNILLE 423 (464)
Q Consensus 385 ~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~p~~~~~~~l~~ 423 (464)
.++......|+..-...+.++- .+.++..+...-..+-.
T Consensus 243 ~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 7777777777766666555442 23444444444444333
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=83.55 E-value=4.5 Score=26.67 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 047873 392 KHGQLKNANMLLDTMLDLGVVP--DDITYNILLEGHCKHGNPEDFDKL 437 (464)
Q Consensus 392 ~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 437 (464)
.....++|+..|+..++.-..+ -..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777776542222 234566677777777777776655
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.47 E-value=7.8 Score=30.50 Aligned_cols=30 Identities=7% Similarity=-0.035 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhcHHHHHHHHH
Q 047873 75 LDDAIQCFRLLRKHYFRIPARGCRCLIDRMM 105 (464)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 105 (464)
++.|++.++.-...+ |.+...+.....++.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALL 36 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALL 36 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHH
Confidence 455566555544444 445555444444433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.31 E-value=3.3 Score=23.80 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=14.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 047873 205 LINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
+..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666666543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=82.98 E-value=35 Score=30.68 Aligned_cols=65 Identities=9% Similarity=0.117 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 309 DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP---DDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
...+|..++..+.+.|+++.|...+.++...+... .+.....-+..+...|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55678889999999999999999999998754211 344555567777888999999999988877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.84 E-value=6.4 Score=28.67 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
..+-++.+..-++.|++......+++|.+.+++..|.++|+-.+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555556777888888888888888888888888877764
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.81 E-value=13 Score=35.18 Aligned_cols=118 Identities=16% Similarity=0.050 Sum_probs=82.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 56 HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
.|--.++|...-.+...|+...|...+.......+.-.......+...+.+.|....|..++.+.+.... ..+.++..+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhc
Confidence 3333555555555567789999999888776554232344566777788888888888888888777664 367778888
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (464)
.+++....+++.|++.|++..+.. +.+...-+.|...-|
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 899999999999999998887763 224444455554444
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=82.31 E-value=39 Score=30.78 Aligned_cols=207 Identities=10% Similarity=0.050 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHH-HHcCCChhhHHHHHHHHHhcCC--CCChhhHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDR-MMRTNLPTVTLGFYLEILDYGY--SPSVYVFNVLM 136 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 136 (464)
.....-+..|. .|+..+|.+.+..+.....++..-.+..|+.+ +....++.+|+.+|+...-.-+ -........-+
T Consensus 114 ~~L~~g~laY~-~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi 192 (421)
T PRK12798 114 QRLADGALAYL-SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSL 192 (421)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Confidence 33444444554 69999999999998887767666677777655 4567889999999998764321 11223344455
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCCCccc--H-HHHHHHHHhcCC---hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKRGLHATAVS--F-NTLINGHCKAKN---LDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (464)
......|+.++...+-.+...+- ..++.. | ..+...+.+.++ .+....++..|.. ..-...|..+.+.-.
T Consensus 193 ~la~~~g~~~rf~~la~~Y~rRF-~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Al 268 (421)
T PRK12798 193 FIAAQLGDADKFEALARNYLRRF-RHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAAL 268 (421)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHH
Confidence 56788899998877766665541 223222 2 223333333332 3333333443331 223557888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC
Q 047873 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274 (464)
Q Consensus 211 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 274 (464)
-.|+.+-|.-.-++....... ...-......|....... ..+++.+.+.+..+....+.+.
T Consensus 269 i~Gk~~lA~~As~~A~~L~~~--~~~~~~ra~LY~aaa~v~-s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 269 IDGKTELARFASERALKLADP--DSADAARARLYRGAALVA-SDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HcCcHHHHHHHHHHHHHhccC--CCcchHHHHHHHHHHccC-cccHHHHHHHHhcCChhhCChh
Confidence 899988888777776655311 111222233333322222 2335677777777655555444
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=82.31 E-value=38 Score=30.66 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHh----------------cCCCCCh-hhH---H
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILET----------------RGTHLPG-LVL---D 63 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~-~~~---~ 63 (464)
|.-+.++-.+...+.++|+...|.+++++++- +++..+-. .=..+.+ ..| -
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf---------~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALF---------AFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF 107 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------HHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence 45567788888899999999999999999872 22222111 0001122 222 2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHH-cCCChhhHHHHHHHHHh
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM-RTNLPTVTLGFYLEILD 122 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 122 (464)
..+..+.+.|-+..|+++.+-+...++.-|+......|..|+ +.++++--+++++....
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 344556777777788887777777764446666666666554 56666666666665443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.00 E-value=1.2 Score=38.66 Aligned_cols=92 Identities=12% Similarity=-0.044 Sum_probs=60.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 71 DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 71 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
..|.++.|++.|....... ++....|..-..++.+.+++..|+.=+...+...+. ...-|-.-..+....|+|++|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 4577788888877777665 455566666667777777777777777777765433 33334444445555677788877
Q ss_pred HHHHHhhCCCCCCc
Q 047873 151 VFDEFGKRGLHATA 164 (464)
Q Consensus 151 ~~~~~~~~~~~~~~ 164 (464)
.+....+.++.+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 77777777654433
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.83 E-value=19 Score=30.88 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 98 RCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
+.+-.++.+.++++.|+...+.++...+. ++.-+.--...|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 33445566677777777777777666554 5555665666677777777776666655443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.71 E-value=46 Score=31.11 Aligned_cols=394 Identities=12% Similarity=0.114 Sum_probs=191.6
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhc-CChhHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDL-GFLDDAIQ 80 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A~~ 80 (464)
|+.++.-|...+..+-+.+.+.+.-.+|.+|+ ..+|++ .+|..-+.....- -+++.|+.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l-------------------~~Hp~~~dLWI~aA~wefe~n~ni~saRa 161 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAML-------------------AKHPNNPDLWIYAAKWEFEINLNIESARA 161 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH-------------------HhCCCCchhHHhhhhhHHhhccchHHHHH
Confidence 45688888888888888888888888888888 445555 7776655544433 35899999
Q ss_pred HHHHHHhCCCCCChhcHHHHHHH---HH-cC-------CC--hhhHHHHHH--HHHhcCCCCChhhHH---HHH--HHHH
Q 047873 81 CFRLLRKHYFRIPARGCRCLIDR---MM-RT-------NL--PTVTLGFYL--EILDYGYSPSVYVFN---VLM--HKLC 140 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~---~~-~~-------~~--~~~a~~~~~--~~~~~~~~~~~~~~~---~l~--~~~~ 140 (464)
+|.+..+.+ |-++..|...++. +. +. |. -++-.++-+ ..-.. ..++..... ..+ ....
T Consensus 162 lflrgLR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~-~~~s~~~~~~~~k~~e~~~~~ 239 (568)
T KOG2396|consen 162 LFLRGLRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWIN-YANSVDIIKGAVKSVELSVAE 239 (568)
T ss_pred HHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHh-hccchhhhhcchhhcchHHHH
Confidence 998888775 3344444333221 11 10 00 000011111 00000 001111100 000 0000
Q ss_pred hcCChhhH-HHHHHHHhhCCCCCCcccHHHHHHH----HHhc---------------CChhHHHHHHHHHhhCCCCCCHH
Q 047873 141 KEGKIKDA-QMVFDEFGKRGLHATAVSFNTLING----HCKA---------------KNLDEGFRLKSVMEGSGMRPDVY 200 (464)
Q Consensus 141 ~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~---------------~~~~~a~~~~~~~~~~~~~~~~~ 200 (464)
......+- ..+.+.+... .+.++.+|..+..- +... .+.+....+|+...+. -|+..
T Consensus 240 ~~d~~kel~k~i~d~~~~~-~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~s 316 (568)
T KOG2396|consen 240 KFDFLKELQKNIIDDLQSK-APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTES 316 (568)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHH
Confidence 00111111 1122223222 23445555433322 1110 0112233455554432 34445
Q ss_pred HHHHHHHHHHhcC------ChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC
Q 047873 201 TYSALINGLCKEN------RLDDAELLLHEMCERG-LTP-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272 (464)
Q Consensus 201 ~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (464)
.|+..|..|...- .+.....+++...+.+ ..+ ....|..+.-.++... ++...-..+...+..
T Consensus 317 m~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~---------~~r~~a~~l~~e~f~ 387 (568)
T KOG2396|consen 317 MWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLN---------EAREVAVKLTTELFR 387 (568)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccc---------hHhHHHHHhhHHHhc
Confidence 5555555554321 3344455555554432 222 3445555555555544 333333333323334
Q ss_pred CCHHhHHHHHHHHHhCC-ChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCC-hHH-H-HHHHHHHHHCCCCCCHhh
Q 047873 273 PDKITYTILLDGFCKEG-DLESAL-DIRKEMIKRGIELDNVAFTALISGFCRGGK-VVE-A-ERMLREMLKVGLKPDDAT 347 (464)
Q Consensus 273 ~~~~~~~~l~~~~~~~~-~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-a-~~~~~~~~~~~~~~~~~~ 347 (464)
.+...|..-+....... +++-.. .++..+...-..+....|+... .|+ +.. . ..++......+ .|+..+
T Consensus 388 ~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~t 461 (568)
T KOG2396|consen 388 DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVT 461 (568)
T ss_pred chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceee
Confidence 45555544444333221 222211 2223333221122222233222 222 111 1 12233333333 455554
Q ss_pred H-HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 047873 348 Y-TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK--HGQLKNANMLLDTMLD-LGVVPDDITYNILLE 423 (464)
Q Consensus 348 ~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~ 423 (464)
+ +.++..+.+.|...+|...+..+... .+|+...|..++..=.. +-+...+.++++.|.. .| .|+..|--.+.
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~ 538 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMK 538 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHH
Confidence 4 56788888899999999999999887 56778888888754321 2237888899988874 45 68888877777
Q ss_pred HHHhcCCHHHHHHHH
Q 047873 424 GHCKHGNPEDFDKLQ 438 (464)
Q Consensus 424 ~~~~~g~~~~a~~~~ 438 (464)
--...|..+.+-.+.
T Consensus 539 ~e~~~g~~en~~~~~ 553 (568)
T KOG2396|consen 539 EELPLGRPENCGQIY 553 (568)
T ss_pred hhccCCCcccccHHH
Confidence 777888877655543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.07 E-value=53 Score=30.84 Aligned_cols=181 Identities=13% Similarity=0.060 Sum_probs=121.3
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH
Q 047873 55 THLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134 (464)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (464)
-+.|+.-+.+++..+..+-++.-..-+..++..-| .+..++..++.+|... ..+.-..+++++.+..+. |+..-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 34455777788888888888888888888888775 4667788888888877 667888888888887665 5555555
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCC--CC---cccHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHH
Q 047873 135 LMHKLCKEGKIKDAQMVFDEFGKRGLH--AT---AVSFNTLINGHCKAKNLDEGFRLKSVMEGS-GMRPDVYTYSALING 208 (464)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 208 (464)
|+..|-+ ++-..+...|.++..+=++ .+ ..+|..+... -..+.+..+.+...+... |...-...+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 6655555 7777888888777554221 11 1234444432 135666677766666532 444455666777778
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047873 209 LCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG 243 (464)
Q Consensus 209 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 243 (464)
|....++++|++++..+.+.+-+ |...-..++..
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 88899999999999988876432 44333344443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=80.04 E-value=15 Score=25.27 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=35.1
Q ss_pred CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhcHHHHHHHHHcCCChh
Q 047873 56 HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI-PARGCRCLIDRMMRTNLPT 111 (464)
Q Consensus 56 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 111 (464)
.|++ .....+...+...|++++|++.+-.+.+.+... +...-..++..+...|.-+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4555 888888888999999999999988888775332 2344455555555445433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 464 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 8e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 94.1 bits (232), Expect = 1e-20
Identities = 32/188 (17%), Positives = 61/188 (32%), Gaps = 4/188 (2%)
Query: 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESA---LDIRKEMIKRGIELDNV 311
+ + + L+ + L A L + ++ L
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 312 AFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG-DTKTGFRLLKE 370
+ A++ G+ R G E +L + GL PD +Y + C + D T R L++
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGN 430
M +G L++ + LK + + T +P + + LL
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 431 PEDFDKLQ 438
+ KL
Sbjct: 287 RVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.9 bits (195), Expect = 6e-16
Identities = 22/169 (13%), Positives = 54/169 (31%), Gaps = 10/169 (5%)
Query: 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEF---GKRGLHATAVSFNTLINGHCKAKNL 180
S ++ A + ++ T +N ++ G +
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCK-ENRLDDAELLLHEMCERGLTPNDVIFTT 239
E + +++ +G+ PD+ +Y+A + + + + E L +M + GL +
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
Query: 240 LIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE 288
L+ + +K K+ P + + LL +
Sbjct: 242 LLSEEDRA------TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 8e-09
Identities = 58/442 (13%), Positives = 115/442 (26%), Gaps = 115/442 (26%)
Query: 87 KHYFRIPAR--GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144
H G L ++ V F E+L Y LM + E +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLRINY-------KFLMSPIKTEQR 103
Query: 145 IKDAQMVFDEFGKRGLHATAVSFNTL-INGHCKAKNLDEG-FRLKSV-------MEGSGM 195
+ L+ F ++ L + L+ + GSG
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255
+ + +C ++ + + L +C + +
Sbjct: 164 -------TWVALDVCLSYKVQCK------------MDFKIFWLNL--KNCNSPETVLEML 202
Query: 256 MKEARKIVDEMCTNGLNPDKITYTI-----LLDGFCKEGDLESALDIRKEMIKRGIELDN 310
K +I + + I I L K E+ L + L N
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----------LLN 252
Query: 311 VAFTALISGF---CR--------------GGKVVEAERMLREMLKVGLKPDDATYTMVID 353
V + F C+ + + + L PD+ ++++
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL--DHHSMTLTPDE-VKSLLLK 309
Query: 354 CF-CKNGDTKTGFRLLKEMRSDGHLPAVETYNALM-NGLC-----KHGQLKNANMLLDTM 406
C+ D L +E+ + + + + +GL KH ++++
Sbjct: 310 YLDCRPQD------LPREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 407 L-------------DLGVVPDD--ITYNIL--LEGHCKHGNPEDF-DKL--------QSE 440
L L V P I +L + + +KL Q +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 441 KGLVSDYACYTSLVSKSSKYRQ 462
+ +S + Y L K
Sbjct: 423 ESTISIPSIYLELKVKLENEYA 444
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 52/374 (13%), Positives = 105/374 (28%), Gaps = 114/374 (30%)
Query: 18 VAHKMHSQARDLLHLIVSKKGMGS--SASLFASILETRGTHLPGLVLD----AL-MIVYV 70
V + + + L + SL L+ R LP VL L +I
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-- 334
Query: 71 DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV--TLGFYLEILDYGYSPS 128
+R A D N + + L +L+
Sbjct: 335 ------------ESIRDG----LAT-----WDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 129 VY----VF----NVLMHKLC---KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA 177
++ VF ++ L + D +V ++ K L
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL----------------- 416
Query: 178 KNLDEGFRLKSVMEGSGMRPDVYTYSALINGL-CKENRLDDAELLLHEMC------ERGL 230
+++ +P T S I + + + E LH +
Sbjct: 417 --VEK-------------QPKESTIS--IPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 231 TPNDVIFTTLIDG--------HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILL 282
+D + +D H KN I+ M R + L+ + I
Sbjct: 460 DSDD-LIPPYLDQYFYSHIGHHLKN--IEHPERMTLFRMVF-------LDFRFLEQKIRH 509
Query: 283 DG--FCKEGDLESAL-DIRKEMIKRGIELDNVAFTALISG---FCR--GGKVVEAERMLR 334
D + G + + L ++ K I ++ + L++ F ++ ++
Sbjct: 510 DSTAWNASGSILNTLQQLKF--YKPYICDNDPKYERLVNAILDFLPKIEENLICSKY--T 565
Query: 335 EMLKVGLKPDDATY 348
++L++ L +D
Sbjct: 566 DLLRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 9e-04
Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 55/221 (24%)
Query: 280 ILLDGFCKEGDLESALDIRKEMIKRGIELDNV--------AFTALISGFCRGGKVVEAER 331
+ D F D + D+ K ++ + E+D++ L E
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQ-----EE 77
Query: 332 MLREMLKVGLKPDDATYTMVID-----CFCKNGDTKTGFRLLKEMRSDG------HLPAV 380
M+++ ++ L+ + Y ++ + T+ + +D ++ +
Sbjct: 78 MVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 381 ETYNALMNGLCK---------HGQL---KNANMLLDTMLDLGVV---PDDITY-NILLEG 424
+ Y L L + G L K + LD L V I + N+
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNL---K 190
Query: 425 HCKHGNPED-FDKLQSEKGLVSDYAC-YTSLVSKSSKYRQK 463
+C +PE + LQ L+ +TS SS + +
Sbjct: 191 NCN--SPETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLR 226
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.8 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.72 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.71 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.71 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.58 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.54 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.44 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.37 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.34 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.33 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.33 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.32 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.32 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.26 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.26 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.25 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.25 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.25 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.23 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.22 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.21 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.21 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.21 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.19 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.17 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.17 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.17 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.16 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.15 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.14 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.14 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.11 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.11 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.1 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.06 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.05 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.03 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.02 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.01 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.01 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.0 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.99 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.98 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.97 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.96 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.96 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.94 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.94 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.93 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.92 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.91 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.91 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.9 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.88 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.88 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.85 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.85 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.84 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.84 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.84 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.84 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.83 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.83 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.81 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.81 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.81 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.8 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.8 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.79 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.79 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.79 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.77 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.77 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.73 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.72 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.71 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.69 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.68 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.68 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.67 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.66 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.62 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.6 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.6 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.58 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.58 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.57 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.55 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.53 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.52 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.52 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.5 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.49 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.49 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.47 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.45 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.44 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.34 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.33 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.32 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.31 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.27 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.27 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.26 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.23 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.19 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.18 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.18 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.14 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.12 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.08 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.07 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.04 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.01 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.01 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.96 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.89 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.86 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.81 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.64 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.54 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.51 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.44 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.44 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.42 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.38 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.27 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.2 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.1 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.04 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.95 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.81 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.8 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.78 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.63 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.53 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.49 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.46 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.35 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.28 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.17 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.93 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.3 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.17 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.08 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.63 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.15 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.76 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.65 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.64 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.23 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.15 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.07 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.06 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.96 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.83 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.73 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.81 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.71 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.37 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.86 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.43 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.42 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.99 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.56 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.24 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 87.81 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.31 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.17 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.84 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.86 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.46 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.25 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.48 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=311.39 Aligned_cols=424 Identities=11% Similarity=0.017 Sum_probs=265.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCC-----------------ChHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG-----------------SSASLFASILETRGTHLPGLVLDALMI 67 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~ 67 (464)
+++..|+.++..|.+.|++++|+.+|++++...... .+...+..+ ...+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE---DLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT---CGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHH---hccccchhHHHHHHH
Confidence 578899999999999999999999999998432110 011111111 112334455555555
Q ss_pred HHHhcCChhHHHHHHHHHHhC---------------CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 68 VYVDLGFLDDAIQCFRLLRKH---------------YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
+|.+.|++++|+++|+++... +.+.+..+|..++.++.+.|++++|.+.|+++.+.++. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 555555555555555532111 11122445555555555556666666555555554432 33333
Q ss_pred HHH--------------------------------------HHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 047873 133 NVL--------------------------------------MHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174 (464)
Q Consensus 133 ~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (464)
..+ +..|.+.|++++|.++|+++.+. +++..+++.++..|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 222 22233445555555555555443 35666666777777
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 047873 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254 (464)
Q Consensus 175 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (464)
.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~---- 389 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI---- 389 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH----
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH----
Confidence 77777777777777766543 2355566667777777777777777777766543 33566677777777776655
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 047873 255 DMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLR 334 (464)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (464)
++|.++|+++.... +.+..+|..++.+|.+.|++++|.++|+++.+.+.. +..++..++.+|.+.|++++|..+|+
T Consensus 390 --~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 390 --SEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp --HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 47777777776542 234567777777777777777777777777765432 56677777777777777777777777
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 335 EMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GHLPA--VETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+
T Consensus 466 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 466 SSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 776654 345667777777777777777777777777664 44555 56777777777777777777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc
Q 047873 409 LGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD 446 (464)
Q Consensus 409 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~ 446 (464)
.+ +.+..+|..+..+|.+.|++++|.+.+++ +.+.|+
T Consensus 545 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 545 LS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 43 33667777777777777777777777776 455665
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=304.59 Aligned_cols=348 Identities=10% Similarity=0.011 Sum_probs=209.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHH--------------------------------------H
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCL--------------------------------------I 101 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~ 101 (464)
.+|+.++.+|.+.|++++|+++|+++.+.+ +.+...+..+ +
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 566666666666666666666666666554 2233333322 2
Q ss_pred HHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChh
Q 047873 102 DRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD 181 (464)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (464)
..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|+++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHH
Confidence 2233456666666666666554 2466666666666666666666666666666543 335566666666666666666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHH
Q 047873 182 EGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARK 261 (464)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ 261 (464)
+|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++ ++|++
T Consensus 357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~------~~A~~ 428 (597)
T 2xpi_A 357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEH------DQAIS 428 (597)
T ss_dssp HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH------HHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH------HHHHH
Confidence 6666666665432 3355666666666666666666666666666542 22455666666666666554 46666
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC--
Q 047873 262 IVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV-- 339 (464)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 339 (464)
+|+++...+ +.+..++..++.+|.+.|++++|.++|+++.+.... +..+|..++..|.+.|++++|..+|+++.+.
T Consensus 429 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 429 AYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 666666543 234556666666666666666666666666665433 5566666666666666666666666666554
Q ss_pred --CCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C
Q 047873 340 --GLKPD--DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-D 414 (464)
Q Consensus 340 --~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~ 414 (464)
+..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.++++++.+. .| +
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~ 583 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNE 583 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCC
Confidence 33454 4566666666666666666666666666542 235666666666666666666666666666653 23 3
Q ss_pred HHHHHHHHHH
Q 047873 415 DITYNILLEG 424 (464)
Q Consensus 415 ~~~~~~l~~~ 424 (464)
...+..+..+
T Consensus 584 ~~~~~~l~~~ 593 (597)
T 2xpi_A 584 IMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHT
T ss_pred hHHHHHHHHH
Confidence 4444444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=237.95 Aligned_cols=381 Identities=13% Similarity=0.019 Sum_probs=317.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR 91 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 91 (464)
+...+.+.|++++|++.|++++. ..|+. ..+..+...+.+.|++++|...++...... |
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~-------------------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p 64 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWR-------------------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-P 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 45677889999999999999883 34555 788888889999999999999999988875 5
Q ss_pred CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHH
Q 047873 92 IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (464)
.+..++..++..+.+.|++++|+..|+++++..+. +..++..+..++...|++++|.+.|+++.+.+ +.+...+..+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 142 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 67788999999999999999999999999987654 67788999999999999999999999988764 33455677788
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047873 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251 (464)
Q Consensus 172 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (464)
..+...|++++|.+.|+++.+.. +.+..+|..+..++...|++++|...|+++.+.++ .+...+..+...+...|+++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHH
Confidence 88889999999999999988763 34578889999999999999999999999988753 25777888888888888874
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047873 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331 (464)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (464)
+|...+++.....+ .+..++..+..++...|++++|...++++.+.++. +..++..+...+.+.|++++|..
T Consensus 221 ------~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 292 (388)
T 1w3b_A 221 ------RAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp ------HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ------HHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999988877532 35678888899999999999999999999887544 67788889999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047873 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411 (464)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 411 (464)
.++++.+.. +.+..++..+...+.+.|++++|...++++.+. .+.+..++..+...|.+.|++++|...++++.+.
T Consensus 293 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-- 368 (388)
T 1w3b_A 293 CYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-- 368 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--
T ss_pred HHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 999998864 567788889999999999999999999998875 3346778889999999999999999999998864
Q ss_pred CC-CHHHHHHHHHHHHhcC
Q 047873 412 VP-DDITYNILLEGHCKHG 429 (464)
Q Consensus 412 ~p-~~~~~~~l~~~~~~~g 429 (464)
.| +...|..+...+...|
T Consensus 369 ~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 369 SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHhHHHHHHHcc
Confidence 44 5667777777666655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-29 Score=230.23 Aligned_cols=373 Identities=12% Similarity=0.014 Sum_probs=323.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
++..+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++..++..+. +..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 4566788999999999999998875 456677888888999999999999999999987654 88899999999999999
Q ss_pred hhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047873 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224 (464)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 224 (464)
+++|...|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998763 3355679999999999999999999999998764 33456778888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047873 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (464)
+.+..+ .+..+|..+...+...|++ ++|...|+++....+ .+...+..+..++...|++++|...+++....
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~------~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEI------WLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCH------HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 988743 3678899999999998876 699999999988643 35678899999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 047873 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384 (464)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (464)
.+. +..++..+...+.+.|++++|...++++.+.+ +.+..++..+...+.+.|++++|...|+++.+. .+.+..++.
T Consensus 233 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~ 309 (388)
T 1w3b_A 233 SPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLN 309 (388)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred CcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHH
Confidence 544 67899999999999999999999999999875 346788999999999999999999999999986 345788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc-hhHHHHh
Q 047873 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD-YACYTSL 453 (464)
Q Consensus 385 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~-~~~~~~l 453 (464)
.+...+.+.|++++|.+.++++.+. .+.+..++..+..++.+.|++++|.+.+++ ..+.|+ ...|..+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 9999999999999999999999875 244688999999999999999999999998 677886 3444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=241.48 Aligned_cols=212 Identities=15% Similarity=0.186 Sum_probs=183.2
Q ss_pred HHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccc---ccCHH
Q 047873 182 EGFRLKSVMEGSGMRPDV-YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDM---AGDMK 257 (464)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~ 257 (464)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|+..+.... .+.++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666555443 35788899999999999999999999999999999999999999988776543 34578
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047873 258 EARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|..+|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 047873 338 KVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393 (464)
Q Consensus 338 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (464)
+.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=237.76 Aligned_cols=206 Identities=20% Similarity=0.261 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCC-----
Q 047873 217 DAELLLHEMCERGLTPND-VIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGD----- 290 (464)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 290 (464)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|+. ++|+++|++|...|+.||..+|+.+|.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~------~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~ 81 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDV------LEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS 81 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh
Confidence 455666777766655443 4588899999998876 6999999999999999999999999999987665
Q ss_pred ----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 047873 291 ----LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFR 366 (464)
Q Consensus 291 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 366 (464)
++.|.++|++|...|+.||..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047873 367 LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428 (464)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 428 (464)
+|++|.+.|+.||..+|++|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999988753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=218.47 Aligned_cols=411 Identities=9% Similarity=-0.075 Sum_probs=322.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
.+.+|..++..+...|++++|+..|++++. ..|+..++..++.+|.+.|++++|++.|+++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALE-------------------LKEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHh-------------------cCccHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 467889999999999999999999999994 3467899999999999999999999999999
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHH-----------
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDE----------- 154 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------- 154 (464)
.+.+ |.+..++..++.++...|++++|...|+++.+.++. +......++..+........+.+.+..
T Consensus 66 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 143 (514)
T 2gw1_A 66 LELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL 143 (514)
T ss_dssp HHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC--------------
T ss_pred hccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9886 556788999999999999999999999999987754 444444444443332222222222211
Q ss_pred ------------------------HhhCCC---------CCCcccHHHHHHHHHh---cCChhHHHHHHHHHhh-----C
Q 047873 155 ------------------------FGKRGL---------HATAVSFNTLINGHCK---AKNLDEGFRLKSVMEG-----S 193 (464)
Q Consensus 155 ------------------------~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~ 193 (464)
+..... +.+...+......+.. .|++++|...++.+.+ .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 223 (514)
T 2gw1_A 144 STQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred cCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh
Confidence 100000 0113334444444444 8999999999999887 3
Q ss_pred CC--------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHH
Q 047873 194 GM--------RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDE 265 (464)
Q Consensus 194 ~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~ 265 (464)
.. +.+..++..+...+...|++++|...|+++.+.... ...+..+...+...|+++ +|...+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~------~A~~~~~~ 295 (514)
T 2gw1_A 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDST------EYYNYFDK 295 (514)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCT------TGGGHHHH
T ss_pred ccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHH------HHHHHHHH
Confidence 11 223556788889999999999999999999887533 788888999999998885 99999999
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH
Q 047873 266 MCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD 345 (464)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 345 (464)
+..... .+...+..+..++...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+.
T Consensus 296 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 296 ALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp HHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred HhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 987643 35678888999999999999999999999987654 67788999999999999999999999998764 3466
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHL-PA----VETYNALMNGLCK---HGQLKNANMLLDTMLDLGVVPDDIT 417 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~ 417 (464)
..+..+...+...|++++|...++++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..+
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 451 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQA 451 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHH
Confidence 78889999999999999999999998875211 11 3378889999999 999999999999998753 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhH
Q 047873 418 YNILLEGHCKHGNPEDFDKLQSE-KGLVSDYAC 449 (464)
Q Consensus 418 ~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~ 449 (464)
+..+...|.+.|++++|.+.+++ +.+.|+...
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 88999999999999999999988 566776443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-25 Score=205.62 Aligned_cols=379 Identities=9% Similarity=-0.024 Sum_probs=258.4
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
-|.++.+|..++..+...|++++|+..|++++.. .+.+..++..++.+|...|++++|+..|
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG------------------DPDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4678899999999999999999999999999842 2334589999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh---hhHHHH------------HHHHHhcCChhh
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV---YVFNVL------------MHKLCKEGKIKD 147 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~ 147 (464)
+++.+.+ +.+..++..++..+...|++++|...|+++.+..+. +. ..+..+ ...+...|++++
T Consensus 84 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 84 TKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999886 556788999999999999999999999999986643 44 555555 445899999999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
|...|+.+.... +.+..++..+..+|...|++++|...|+.+.+.. +.+..++..++.+|...|++++|+..|+++.+
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 4577889999999999999999999999998753 45788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047873 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307 (464)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (464)
.... +...+..+.. .. . ......++.++...|++++|...|+.+.+..+.
T Consensus 240 ~~p~-~~~~~~~~~~-~~------------~----------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 240 LDQD-HKRCFAHYKQ-VK------------K----------------LNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp HCTT-CHHHHHHHHH-HH------------H----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred hCCC-hHHHHHHHHH-HH------------H----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 6322 3333333200 00 0 011222344455555555555555555544221
Q ss_pred CC----HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHH
Q 047873 308 LD----NVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY 383 (464)
Q Consensus 308 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 383 (464)
+ ...+..+...+.+.|++++|...++++.+.. +.+...+..+..+|...|++++|...|+++.+.. +-+...+
T Consensus 290 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 366 (450)
T 2y4t_A 290 -IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIR 366 (450)
T ss_dssp -SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHH
T ss_pred -chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHH
Confidence 1 2244555555555555555555555555432 2244555555555555555555555555555531 1123333
Q ss_pred HHHH------------HHHHhcC-----CHHHHHHHHHH-HHhCC--CCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 047873 384 NALM------------NGLCKHG-----QLKNANMLLDT-MLDLG--VVPD-------DITYNILLEGHCKHGNPEDFDK 436 (464)
Q Consensus 384 ~~l~------------~~~~~~g-----~~~~a~~~~~~-~~~~~--~~p~-------~~~~~~l~~~~~~~g~~~~a~~ 436 (464)
..+. ..|...| +.+++.+.+++ ..+.. ..|+ ...+..+..+|...|+.+...+
T Consensus 367 ~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 3333 1233333 55666777765 33221 0122 2367778888888887776543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-25 Score=208.47 Aligned_cols=403 Identities=12% Similarity=0.011 Sum_probs=304.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
....|..++..+...|++++|++.|++++. ..|+. .++..++.+|.+.|++++|++.|++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 84 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIE-------------------LDPNEPVFYSNISACYISTGDLEKVIEFTTK 84 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHh-------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 357789999999999999999999999984 34444 8999999999999999999999999
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC-----
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG----- 159 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 159 (464)
+...+ |.+..++..++.++...|++++|...|+ .....+.+. ...+..+...+....|...++.+....
T Consensus 85 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 158 (537)
T 3fp2_A 85 ALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158 (537)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 99886 5577889999999999999999999996 444332211 222334555555667777777775431
Q ss_pred -CCCCcc------------------------------cHHHHHHHHHh--------cCChhHHHHHHHHHhhCCCCCC--
Q 047873 160 -LHATAV------------------------------SFNTLINGHCK--------AKNLDEGFRLKSVMEGSGMRPD-- 198 (464)
Q Consensus 160 -~~~~~~------------------------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-- 198 (464)
..|+.. ....+...+.. .|++++|..+++.+.+.. |+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~ 236 (537)
T 3fp2_A 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDD 236 (537)
T ss_dssp CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCH
T ss_pred cccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcc
Confidence 011111 11222222111 247889999999988763 33
Q ss_pred ------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC
Q 047873 199 ------VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272 (464)
Q Consensus 199 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (464)
..++..+...+...|++++|...|+++.+.. |+...+..+...+...|++ ++|...++++....+
T Consensus 237 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~- 307 (537)
T 3fp2_A 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS------QEFFKFFQKAVDLNP- 307 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC------HHHHHHHHHHHHHCT-
T ss_pred hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH------HHHHHHHHHHhccCC-
Confidence 2356677788889999999999999998873 5577888888888888877 599999999987643
Q ss_pred CCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 047873 273 PDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVI 352 (464)
Q Consensus 273 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 352 (464)
.+..++..+..++...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 385 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFA 385 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 35778889999999999999999999999987654 56788899999999999999999999998874 44567888999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC-----CCcCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHH
Q 047873 353 DCFCKNGDTKTGFRLLKEMRSDG-----HLPAVETYNALMNGLCKH----------GQLKNANMLLDTMLDLGVVPDDIT 417 (464)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~ 417 (464)
..+...|++++|...|+++.+.. .......+......+... |++++|...++++.+.. +.+...
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~ 464 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQA 464 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHH
Confidence 99999999999999999987741 111223344556777777 99999999999998753 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-cCCCCch
Q 047873 418 YNILLEGHCKHGNPEDFDKLQSE-KGLVSDY 447 (464)
Q Consensus 418 ~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~ 447 (464)
+..+...|.+.|++++|.+.+++ ..+.|+.
T Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 89999999999999999999987 5555653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-24 Score=199.82 Aligned_cols=367 Identities=12% Similarity=0.031 Sum_probs=290.1
Q ss_pred CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH
Q 047873 56 HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134 (464)
Q Consensus 56 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (464)
.|+. ..+..++..+.+.|++++|+.+|+++.... +.+..++..++.++...|++++|...++++++.++. +..++..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 99 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQ 99 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHH
Confidence 4555 899999999999999999999999998875 557888999999999999999999999999998765 7889999
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCCCc---ccHHHH------------HHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 047873 135 LMHKLCKEGKIKDAQMVFDEFGKRGLHATA---VSFNTL------------INGHCKAKNLDEGFRLKSVMEGSGMRPDV 199 (464)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 199 (464)
++.++...|++++|.+.|+++.+.+ +.+. ..+..+ ...+...|++++|...++.+.+.. +.+.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 9999999999999999999998863 2233 455555 444889999999999999998764 4578
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCH-HhH
Q 047873 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK-ITY 278 (464)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 278 (464)
..+..++.+|...|++++|+++|+++.+.. +.+..++..+...|...|++ ++|+..|+++... .|+. ..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~--~p~~~~~~ 248 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDH------ELSLSEVRECLKL--DQDHKRCF 248 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHh--CCChHHHH
Confidence 889999999999999999999999998764 34788999999999998876 6999999999875 3333 222
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC-----HhhHHHHHH
Q 047873 279 TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPD-----DATYTMVID 353 (464)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~ 353 (464)
..+... . ....+..+...+.+.|++++|...++++.+.. |+ ...+..+..
T Consensus 249 ~~~~~~-----------------~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 249 AHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHHH-----------------H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHH
Confidence 222111 0 11234456788899999999999999998863 44 347888999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH----------
Q 047873 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-DDITYNILL---------- 422 (464)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~---------- 422 (464)
++.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++.+. .| +...+..+.
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhccc
Confidence 9999999999999999998752 346889999999999999999999999999974 45 456666665
Q ss_pred --HHHHhcC-----CHHHHHHHHHh--cCCCCch-----------hHHHHhhccchhhhhc
Q 047873 423 --EGHCKHG-----NPEDFDKLQSE--KGLVSDY-----------ACYTSLVSKSSKYRQK 463 (464)
Q Consensus 423 --~~~~~~g-----~~~~a~~~~~~--~~~~p~~-----------~~~~~ll~~~~~~~~~ 463 (464)
..|...| +.+++.+.+++ +...||. ..+..+-.++...+|.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 2355555 66677877775 3445542 2455555555555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-23 Score=196.88 Aligned_cols=378 Identities=11% Similarity=-0.045 Sum_probs=296.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
|++.+|..++.++...|++++|++.|++++. ..|+. .++..++.+|.+.|++++|+..|+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALE-------------------LKPDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc-------------------cChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5789999999999999999999999999984 34555 899999999999999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHH-----------------------------------HHHhcCC---
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYL-----------------------------------EILDYGY--- 125 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----------------------------------~~~~~~~--- 125 (464)
++...+ +++......++..+........+.+.+. .+.....
T Consensus 98 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 98 VLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 999886 3444444444443333222222111111 1111000
Q ss_pred ------CCChhhHHHHHHHHHh---cCChhhHHHHHHHHhh-----CCC--------CCCcccHHHHHHHHHhcCChhHH
Q 047873 126 ------SPSVYVFNVLMHKLCK---EGKIKDAQMVFDEFGK-----RGL--------HATAVSFNTLINGHCKAKNLDEG 183 (464)
Q Consensus 126 ------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a 183 (464)
+.+...+......+.. .|++++|...|+++.+ ... +.+..++..+...+...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 1114444455555554 8999999999999887 311 12345778888999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Q 047873 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263 (464)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~ 263 (464)
...++.+.+.. |+...+..+..++...|++++|...++++.+... .+...+..+...+...|+++ +|...+
T Consensus 257 ~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~------~A~~~~ 327 (514)
T 2gw1_A 257 HEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYD------QAGKDF 327 (514)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTT------HHHHHH
T ss_pred HHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHH------HHHHHH
Confidence 99999998764 3488889999999999999999999999988743 36778889999999999884 999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCC-
Q 047873 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLK- 342 (464)
Q Consensus 264 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 342 (464)
+++....+ .+...+..+..++...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+....
T Consensus 328 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 99988643 35678888999999999999999999999987543 6788999999999999999999999999875311
Q ss_pred CC----HhhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 047873 343 PD----DATYTMVIDCFCK---NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDD 415 (464)
Q Consensus 343 ~~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 415 (464)
++ ...+..+...+.. .|++++|...|+++.+.. +.+..++..+...|.+.|++++|...++++.+. .|+.
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 11 3388899999999 999999999999998863 346788899999999999999999999999974 4554
Q ss_pred H
Q 047873 416 I 416 (464)
Q Consensus 416 ~ 416 (464)
.
T Consensus 483 ~ 483 (514)
T 2gw1_A 483 E 483 (514)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-21 Score=175.17 Aligned_cols=331 Identities=8% Similarity=-0.026 Sum_probs=250.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
++..|..++..+...|++++|++.|++++. ..|+ ..++..++..+...|++++|+..|++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 62 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVD-------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------hCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 578899999999999999999999999984 2344 48999999999999999999999999
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC---CCChhhHHHH------------HHHHHhcCChhhHH
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY---SPSVYVFNVL------------MHKLCKEGKIKDAQ 149 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l------------~~~~~~~~~~~~a~ 149 (464)
+.... +.+...+..++..+...|++++|...++++.+..+ . +...+..+ ...+...|++++|.
T Consensus 63 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 63 VIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE-EKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccC-hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 98875 44678899999999999999999999999998754 2 45555544 57889999999999
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+...+..
T Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 141 TFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999998774 4567888999999999999999999999998774 4578889999999999999999999999998763
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 047873 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELD 309 (464)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 309 (464)
.. +...+..+ ..+. .......+...+.+.|++++|...++.+.+.... +
T Consensus 219 ~~-~~~~~~~~-----------------------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~ 267 (359)
T 3ieg_A 219 QD-HKRCFAHY-----------------------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-V 267 (359)
T ss_dssp TT-CHHHHHHH-----------------------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-S
T ss_pred cc-chHHHHHH-----------------------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-c
Confidence 22 22222211 1110 1112233455666777777777777777765433 2
Q ss_pred H----HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 047873 310 N----VAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNA 385 (464)
Q Consensus 310 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 385 (464)
. ..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. +-+...+..
T Consensus 268 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 345 (359)
T 3ieg_A 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREG 345 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 2 224446667777777777777777777653 3356677777777777777777777777777752 223555555
Q ss_pred HHHHHHh
Q 047873 386 LMNGLCK 392 (464)
Q Consensus 386 l~~~~~~ 392 (464)
+..+...
T Consensus 346 l~~~~~~ 352 (359)
T 3ieg_A 346 LEKAQRL 352 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=186.53 Aligned_cols=384 Identities=10% Similarity=0.003 Sum_probs=290.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+.+.|++++|++.|+++...+ |.+..++..++.++...|++++|+..++++++..+. +..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 677888999999999999999999999886 557889999999999999999999999999998765 788999999999
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC------CCCCCHHH------------
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS------GMRPDVYT------------ 201 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~------------ 201 (464)
...|++++|...|+.+... |+ .....+..+...+....|...++.+... ...|+...
T Consensus 104 ~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLN---GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHHhcC---CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 9999999999999744322 22 2222334445555667788888877543 11122211
Q ss_pred ------------------HHHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcC
Q 047873 202 ------------------YSALINGLCK--------ENRLDDAELLLHEMCERGLTPND-------VIFTTLIDGHCKNG 248 (464)
Q Consensus 202 ------------------~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~ 248 (464)
...+...+.. .|++++|..+|+++.+.... +. ..+..+...+...|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcc
Confidence 1222222221 24789999999999876432 32 24555666677766
Q ss_pred CcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 047873 249 RIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVE 328 (464)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (464)
++ ++|...++++.... |+...+..+..++...|++++|...++.+.+..+. +..++..+...+...|++++
T Consensus 258 ~~------~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 258 NL------LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp CH------HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred cH------HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHH
Confidence 65 69999999998864 55788889999999999999999999999988654 78899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 329 AERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999875 3456789999999999999999999999999863 34577889999999999999999999999875
Q ss_pred CC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHh-cCCCCc-hhHHHHhhccchhhhh
Q 047873 409 LG-----VVPDDITYNILLEGHCKH----------GNPEDFDKLQSE-KGLVSD-YACYTSLVSKSSKYRQ 462 (464)
Q Consensus 409 ~~-----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~-~~~~p~-~~~~~~ll~~~~~~~~ 462 (464)
.. .......+.....++... |++++|...+++ ....|+ ...+..+-..+.+.|+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 32 111223345556677777 999999999998 555664 5556666665555554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-20 Score=168.05 Aligned_cols=330 Identities=12% Similarity=0.022 Sum_probs=266.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+...|++++|+..|+++.... |.+..++..++..+...|++++|...++++++..+. +...+..+..++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence 567788899999999999999999998876 556788999999999999999999999999987654 778999999999
Q ss_pred HhcCChhhHHHHHHHHhhCCCC---CCcccHHHH------------HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLH---ATAVSFNTL------------INGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 204 (464)
...|++++|...|++..+.. + .+...+..+ ...+...|++++|...++.+.+.. +.+...+..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999998763 2 234444444 578889999999999999998764 457788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 047873 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG 284 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 284 (464)
+..++...|++++|...++++.+.. +.+...+..+...+...|++ ++|...+++.....+. +...+..
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~------~~A~~~~~~a~~~~~~-~~~~~~~---- 227 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDH------ELSLSEVRECLKLDQD-HKRCFAH---- 227 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHCTT-CHHHHHH----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCcc-chHHHHH----
Confidence 9999999999999999999999874 34788889999999998876 6999999998875321 2222221
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCC
Q 047873 285 FCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDD----ATYTMVIDCFCKNGD 360 (464)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~ 360 (464)
+..+. .......+...+.+.|++++|...++++.+.. +.+. ..+..+..++...|+
T Consensus 228 -------------~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 228 -------------YKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp -------------HHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred -------------HHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccC
Confidence 11111 12333445677889999999999999998864 2233 235567889999999
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 047873 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVP-DDITYNILLEGHCKH 428 (464)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 428 (464)
+++|...++++.+.. +.+...+..+...|...|++++|.+.++++.+. .| +...+..+..+....
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHH
Confidence 999999999999862 347889999999999999999999999999975 45 466677776666543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.3e-19 Score=164.11 Aligned_cols=357 Identities=13% Similarity=0.019 Sum_probs=278.3
Q ss_pred CCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChh
Q 047873 5 LTLHAYSTMVHFLVA----HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVD----LGFLD 76 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 76 (464)
.++.++..|...|.. .+++++|++.|+++... .+..++..|...|.. .++++
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------------------~~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--------------------GYTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 367788888888888 88999999999888742 244677778888888 88999
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhhH
Q 047873 77 DAIQCFRLLRKHYFRIPARGCRCLIDRMMR----TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK----EGKIKDA 148 (464)
Q Consensus 77 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 148 (464)
+|+++|++....+ +..++..+...+.. .+++++|+..|++..+.| ++..+..+..+|.. .+++++|
T Consensus 97 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 97 QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999888765 55667778888877 788999999999888765 66777788888877 7889999
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 047873 149 QMVFDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK----ENRLDDAEL 220 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 220 (464)
.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|..
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99998888764 66777888888877 788999999998888754 56677777877776 788899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhC-----CChHHHH
Q 047873 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE-----GDLESAL 295 (464)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~ 295 (464)
+|++..+.+ +...+..+...|.... ...++.++|+..|++..+.+ +...+..+...|... +++++|.
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~--~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGL--AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTT--TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 999888764 4555666666666511 11245679999999887754 445667777777776 8899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHH
Q 047873 296 DIRKEMIKRGIELDNVAFTALISGFCRGG---KVVEAERMLREMLKVGLKPDDATYTMVIDCFCK----NGDTKTGFRLL 368 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~ 368 (464)
..+++..+.+ +...+..+...|...| +.++|..+|++..+.+ +...+..+...|.. .+++++|...|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999888875 4566777777777655 7888999999888864 56778888888887 78899999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 047873 369 KEMRSDGHLPAVETYNALMNGLCK----HGQLKNANMLLDTMLDLG 410 (464)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 410 (464)
++..+.+ ++..+..+...|.. .+++++|...|++..+.+
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9988864 56778888888887 789999999999988765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-19 Score=166.71 Aligned_cols=417 Identities=12% Similarity=0.075 Sum_probs=299.3
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
.|.+..+|..++.. .+.|++++|..+|++++ ...|+. ..|..++..+.+.|++++|+.+
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al-------------------~~~P~~~~~w~~~~~~~~~~~~~~~a~~~ 68 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLV-------------------AQFPSSGRFWKLYIEAEIKAKNYDKVEKL 68 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHH-------------------TTCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHH-------------------HHCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 36789999999984 78999999999999999 455655 8999999999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHH-HcCCChhhHHH----HHHHHHhc-CCCC-ChhhHHHHHHHHHh---------cCCh
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRM-MRTNLPTVTLG----FYLEILDY-GYSP-SVYVFNVLMHKLCK---------EGKI 145 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~ 145 (464)
|++..... |+...|...+... ...|+.+.|.+ +|++.+.. |..| +...|...+....+ .|++
T Consensus 69 ~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 69 FQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp HHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred HHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 99999885 4777777776533 45678877765 77776653 4333 56778777776655 6889
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHH-------------HhcCChhHHHHHHHHH------hhCC---CCCC-----
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGH-------------CKAKNLDEGFRLKSVM------EGSG---MRPD----- 198 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~------~~~~---~~~~----- 198 (464)
+.|..+|++..+.........|....... .+.+++..|..++..+ .+.. ++|+
T Consensus 147 ~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 99999999998731111123333222211 1245567777776653 2221 2333
Q ss_pred ---HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCccccc-CHHHH
Q 047873 199 ---VYTYSALINGLCKE----NRL----DDAELLLHEMCERGLTPNDVIFTTLIDGHCK-------NGRIDMAG-DMKEA 259 (464)
Q Consensus 199 ---~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~-~~~~a 259 (464)
...|...+...... ++. .++..+|++..... +.+...|......+.+ .|+++.+. -.++|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 23454444333222 232 37788999988763 3367888888887775 56541000 01289
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDN-VAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
..++++....-.+.+...|..++..+.+.|++++|..+|+++++..+. +. ..|..++..+.+.|++++|..+|++..+
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999986323346788999999999999999999999999986432 33 5899999999999999999999999988
Q ss_pred CCCCCCHhhHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--C
Q 047873 339 VGLKPDDATYTMVIDC-FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG-VVP--D 414 (464)
Q Consensus 339 ~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~ 414 (464)
.. +.+...+...+.. +...|+.++|..+|++..+.. +.++..|..++..+.+.|+.++|..+|++....+ ..| .
T Consensus 385 ~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 385 DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp CT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred cc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 63 2233334333322 346899999999999998862 3368899999999999999999999999999753 223 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCC
Q 047873 415 DITYNILLEGHCKHGNPEDFDKLQSE-KGLVS 445 (464)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p 445 (464)
...|...+......|+.+.+.++.++ ....|
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 44788888888899999999888776 33344
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-20 Score=165.38 Aligned_cols=295 Identities=11% Similarity=-0.003 Sum_probs=210.5
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
++.++..+..++..+...|++++|+++|++++.. .|+. ..+..++..+...|++++|+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~ 78 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK-------------------DPFHASCLPVHIGTLVELNKANELFYL 78 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCTTTHHHHHHHHHHHTCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------------CCCChhhHHHHHHHHHHhhhHHHHHHH
Confidence 4566777888889999999999999999998842 3343 7777788888899999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcCC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRTN-LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
++++.... +.+...+..+...+...| ++++|...++++++..+. +...+..+..++...|++++|.+.+++..+..
T Consensus 79 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 155 (330)
T 3hym_B 79 SHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM- 155 (330)
T ss_dssp HHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-
Confidence 99988875 456778888888999999 899999999999887654 67788889999999999999999999988764
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047873 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240 (464)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 240 (464)
+.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+....
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------- 225 (330)
T 3hym_B 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA--------- 225 (330)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---------
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh---------
Confidence 3356777788889999999999999999988764 446778888999999999999999999888764100
Q ss_pred HHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047873 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGF 320 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (464)
.+. ....+....++..+..++...|++++|...+++..+.... +...+..+...+
T Consensus 226 ------~~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 280 (330)
T 3hym_B 226 ------IGN------------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIH 280 (330)
T ss_dssp ------TSC------------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHH
T ss_pred ------ccc------------------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH
Confidence 000 0001122334455555555555555555555555554322 445555555555
Q ss_pred hccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 047873 321 CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCF 355 (464)
Q Consensus 321 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 355 (464)
...|++++|...++++.+.. +.+...+..+..++
T Consensus 281 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 281 SLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 55555555555555555442 22344445555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-20 Score=162.24 Aligned_cols=304 Identities=11% Similarity=-0.040 Sum_probs=249.1
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 54 GTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
+.+.+..++..++..+...|++++|+++|+++...+ +.+...+..++..+...|++++|...++++++..+. +..++.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHH
Confidence 344455788889999999999999999999998876 456677888888999999999999999999987655 788899
Q ss_pred HHHHHHHhcC-ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 047873 134 VLMHKLCKEG-KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212 (464)
Q Consensus 134 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (464)
.+...+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999998774 4467789999999999999999999999998764 33566777899999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChH
Q 047873 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 292 (464)
|++++|.+.++++.+.. +.+...+..+...+...|++ ++|...++++...... .++
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~a~~~~~~---------------~~~-- 228 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEW------KTAEKWFLDALEKIKA---------------IGN-- 228 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHTT---------------TSC--
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccH------HHHHHHHHHHHHHhhh---------------ccc--
Confidence 99999999999998874 33678889999999998876 6999999887653110 000
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047873 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372 (464)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 372 (464)
....+....++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.
T Consensus 229 ----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 229 ----------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp ----------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred ----------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11123346789999999999999999999999999875 4467889999999999999999999999998
Q ss_pred hCCCCcCHHHHHHHHHHH-HhcCCHH
Q 047873 373 SDGHLPAVETYNALMNGL-CKHGQLK 397 (464)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~-~~~g~~~ 397 (464)
+.. +.+...+..+..++ ...|+.+
T Consensus 298 ~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 298 GLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred ccC-CCchHHHHHHHHHHHHHhCchh
Confidence 863 33677888888888 4556544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-17 Score=154.88 Aligned_cols=352 Identities=13% Similarity=0.034 Sum_probs=297.7
Q ss_pred CChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCChhhHHHHHHHHHhcCCCCC
Q 047873 57 LPGLVLDALMIVYVD----LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR----TNLPTVTLGFYLEILDYGYSPS 128 (464)
Q Consensus 57 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 128 (464)
.+..++..+...|.. .+++++|+..|++..+.+ +..++..+...+.. .+++++|..+|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 355788888888888 899999999999998875 56788888999988 899999999999999865 6
Q ss_pred hhhHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHH
Q 047873 129 VYVFNVLMHKLCK----EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVY 200 (464)
Q Consensus 129 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 200 (464)
+..+..+...|.. .+++++|.+.|++....+ +...+..+...|.. .+++++|.++|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7788888889988 889999999999998875 56778888888887 789999999999998864 677
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH
Q 047873 201 TYSALINGLCK----ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276 (464)
Q Consensus 201 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 276 (464)
.+..+...|.. .+++++|.++|++..+.+ +...+..+...|..... ..+++++|..+|++....+ +..
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g--~~~~~~~A~~~~~~a~~~~---~~~ 256 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIG--VTQDYTQSRVLFSQSAEQG---NSI 256 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHTTT---CHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHCC---CHH
Confidence 88889999988 899999999999999875 56677777777775211 1345689999999998864 455
Q ss_pred hHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CChHHHHHHHHHHHHCCCCCCHhh
Q 047873 277 TYTILLDGFCK----EGDLESALDIRKEMIKRGIELDNVAFTALISGFCRG-----GKVVEAERMLREMLKVGLKPDDAT 347 (464)
Q Consensus 277 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~ 347 (464)
.+..+...+.. .+++++|...|+...+.+ +...+..+...|... +++++|...+++..+.+ +...
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 67777888887 899999999999998875 556777888888777 89999999999999875 5567
Q ss_pred HHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047873 348 YTMVIDCFCKNG---DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK----HGQLKNANMLLDTMLDLGVVPDDITYNI 420 (464)
Q Consensus 348 ~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 420 (464)
+..+...|...| ++++|.+.|++..+. .++..+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~ 404 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHH
Confidence 778888887766 789999999999987 367888899999998 899999999999999864 6778888
Q ss_pred HHHHHHh----cCCHHHHHHHHHh
Q 047873 421 LLEGHCK----HGNPEDFDKLQSE 440 (464)
Q Consensus 421 l~~~~~~----~g~~~~a~~~~~~ 440 (464)
+...|.. .+++++|.+.+++
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999988 8999999999987
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-20 Score=165.12 Aligned_cols=327 Identities=10% Similarity=-0.007 Sum_probs=205.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHH-HHHHHHhcCCC---CChhhHHHHHHHHHhcCChhh
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLG-FYLEILDYGYS---PSVYVFNVLMHKLCKEGKIKD 147 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 147 (464)
.+.++.+...|+.+.+.+. + .+...|++++|+. .+++.....+. .+...+..+...+...|++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDA--E---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHcCCc--h---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 3445555556665544431 1 2233477788877 77766544322 135667788888888899999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
|...|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+..++..+..++...|++++|.+.++++.+
T Consensus 83 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 83 AVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999888888764 4466778888888888999999999988887764 44677888889999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047873 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307 (464)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (464)
.... +...+..+... . .. ..+. ..+..+...+ ..|++++|...++++.+..+.
T Consensus 161 ~~~~-~~~~~~~~~~~---~----------~~-----------~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~ 213 (368)
T 1fch_A 161 YTPA-YAHLVTPAEEG---A----------GG-----------AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPT 213 (368)
T ss_dssp TSTT-TGGGCC----------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTT
T ss_pred hCcC-cHHHHHHHHHH---h----------hh-----------hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcC
Confidence 6422 22111111000 0 00 0000 1111222223 667788888888888776433
Q ss_pred C-CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 047873 308 L-DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386 (464)
Q Consensus 308 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 386 (464)
. +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+
T Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l 291 (368)
T 1fch_A 214 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNL 291 (368)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 2 46777788888888888888888888877754 3456778888888888888888888888887752 3356778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 387 MNGLCKHGQLKNANMLLDTMLDLGVV----------PDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 387 ~~~~~~~g~~~~a~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
..+|.+.|++++|...++++.+.... ....+|..+..+|...|++++|..+.++
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 88888888888888888887753111 0257788888888888888888877653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-19 Score=160.53 Aligned_cols=314 Identities=11% Similarity=-0.058 Sum_probs=215.4
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH-HHHHHhhCCC---CCCcccHHHHHHHHHhcCChhHH
Q 047873 108 NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM-VFDEFGKRGL---HATAVSFNTLINGHCKAKNLDEG 183 (464)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 183 (464)
+.+..+...|+.+.+.+. + ++...|++++|.. .+++...... ..+...+..+...+...|++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 83 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDA--E---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA 83 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHcCCc--h---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHH
Confidence 344455555555544332 1 2344578888988 8876554321 11356788999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Q 047873 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIV 263 (464)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~ 263 (464)
...++++.+.. +.+..++..+..++...|++++|.+.|+++.+... .+...+..+...+...|++ ++|...+
T Consensus 84 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~------~~A~~~~ 155 (368)
T 1fch_A 84 VLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQ------RQACEIL 155 (368)
T ss_dssp HHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH------HHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCH------HHHHHHH
Confidence 99999999875 45778899999999999999999999999998753 3788899999999998876 6999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC
Q 047873 264 DEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP 343 (464)
Q Consensus 264 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 343 (464)
+++....+. +...+..+... .. . .. ....+..+...+ ..|++++|...++++.+.....
T Consensus 156 ~~~~~~~~~-~~~~~~~~~~~-------~~-------~----~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~ 214 (368)
T 1fch_A 156 RDWLRYTPA-YAHLVTPAEEG-------AG-------G----AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS 214 (368)
T ss_dssp HHHHHTSTT-TGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHhCcC-cHHHHHHHHHH-------hh-------h----hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc
Confidence 999886432 22222111110 00 0 00 011122233333 8899999999999998864211
Q ss_pred -CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047873 344 -DDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422 (464)
Q Consensus 344 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 422 (464)
+..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~ 292 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLG 292 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 57889999999999999999999999998863 3467899999999999999999999999998752 34688999999
Q ss_pred HHHHhcCCHHHHHHHHHh-cCCCCc------------hhHHHHhhccchhhhhc
Q 047873 423 EGHCKHGNPEDFDKLQSE-KGLVSD------------YACYTSLVSKSSKYRQK 463 (464)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~-~~~~p~------------~~~~~~ll~~~~~~~~~ 463 (464)
.+|.+.|++++|.+.+++ +.+.|+ ...|..+..++.+.|+.
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 999999999999999887 333333 46777777777776653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-18 Score=159.85 Aligned_cols=387 Identities=10% Similarity=-0.079 Sum_probs=222.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.....||.|+.++...|++++|++.|++++. +....... ...|+. .+|+.+..+|...|++++|+..|+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~---------~~~~~~~~-~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ 118 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEE---------LIQQEHAD-QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD 118 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HHHHHSGG-GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------HHHhcCcc-ccchHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3456799999999999999999999999873 22222221 223444 789999999999999999999999
Q ss_pred HHHhCC----C---CCChhcHHHHHHHHHc--CCChhhHHHHHHHHHhcCCCCChhhHHHHHHH---HHhcCChhhHHHH
Q 047873 84 LLRKHY----F---RIPARGCRCLIDRMMR--TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK---LCKEGKIKDAQMV 151 (464)
Q Consensus 84 ~~~~~~----~---~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~ 151 (464)
+..... . .....++.....++.. .+++++|++.|+++++..+. ++..+..+..+ +...++.++|++.
T Consensus 119 ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 119 KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp HHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred HHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 876431 0 1123455555555544 46799999999999987765 66666665555 4456888899999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
+++..+.+ +.+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+
T Consensus 198 ~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 198 LRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 99887764 3355566655555544 467889999999887764 45677889999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047873 228 RGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE 307 (464)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (464)
..+. +...+..+..+|...+.. .. ... ... ........+..+.|...++...+.++.
T Consensus 276 ~~p~-~~~~~~~lg~~y~~~~~~-----------~~----~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~~ 332 (472)
T 4g1t_A 276 YIPN-NAYLHCQIGCCYRAKVFQ-----------VM----NLR-ENG------MYGKRKLLELIGHAVAHLKKADEANDN 332 (472)
T ss_dssp HSTT-CHHHHHHHHHHHHHHHHH-----------HH----HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hCCC-hHHHHHHHHHHHHHHHHH-----------hh----hHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence 7432 566666666555432110 00 000 000 000001112234555555555544322
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHh--hHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 047873 308 LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDA--TYTMVID-CFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384 (464)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (464)
+...+..+...+...|++++|...|+++.+....+... .+..+.. .....|++++|+..|++..+. .|+.....
T Consensus 333 -~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~ 409 (472)
T 4g1t_A 333 -LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE 409 (472)
T ss_dssp -TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH
T ss_pred -hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH
Confidence 33444555555555555555555555555543222111 1111111 123445555666665555553 22221111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 385 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
+....+.++++...+.+ +.+..+|..+..+|...|++++|.+.+++
T Consensus 410 ---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 410 ---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp ---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------
T ss_pred ---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11222333444443321 23455555666666666666666666555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-17 Score=157.82 Aligned_cols=396 Identities=11% Similarity=0.018 Sum_probs=281.4
Q ss_pred CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH
Q 047873 56 HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134 (464)
Q Consensus 56 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (464)
.|++ .+|..++. +.+.|++++|+.+|+++.... |.+...|...+..+.+.|++++|..+|++++... |+...|..
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 4544 89999998 478999999999999999885 6678889999999999999999999999999865 57778877
Q ss_pred HHHHH-HhcCChhhHHH----HHHHHhhC-CCCC-CcccHHHHHHHHHh---------cCChhHHHHHHHHHhhCCCCCC
Q 047873 135 LMHKL-CKEGKIKDAQM----VFDEFGKR-GLHA-TAVSFNTLINGHCK---------AKNLDEGFRLKSVMEGSGMRPD 198 (464)
Q Consensus 135 l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~ 198 (464)
++... ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++..+....+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 77533 45688887766 66666543 4433 45677777776654 6889999999999987311111
Q ss_pred HHHHHHHHHHH-------------HhcCChhHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhcC
Q 047873 199 VYTYSALINGL-------------CKENRLDDAELLLHEMC------ERG---LTPN--------DVIFTTLIDGHCKNG 248 (464)
Q Consensus 199 ~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~~ 248 (464)
...|....... .+.+++..|..++.... +.. ++|+ ...|...+......+
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 23333222211 13456777877776632 211 2333 234555544332221
Q ss_pred CcccccC----HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------CCChH-------HHHHHHHHHHHcCCCCCH
Q 047873 249 RIDMAGD----MKEARKIVDEMCTNGLNPDKITYTILLDGFCK-------EGDLE-------SALDIRKEMIKRGIELDN 310 (464)
Q Consensus 249 ~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~ 310 (464)
. ..++ ...+..+|++..... +.+...|...+..+.+ .|+++ +|..++++.++.-.+-+.
T Consensus 245 ~--~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 245 L--RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp S--CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred c--cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 1 0112 136778899988753 3467788888887775 79987 899999999873223368
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC-H-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 047873 311 VAFTALISGFCRGGKVVEAERMLREMLKVGLKPD-D-ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMN 388 (464)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 388 (464)
..|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|...+.
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~ 398 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHH
Confidence 89999999999999999999999999986 444 2 478888898999999999999999999862 223333333332
Q ss_pred H-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCC---CCc--hhHHHHhhccchhhh
Q 047873 389 G-LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGL---VSD--YACYTSLVSKSSKYR 461 (464)
Q Consensus 389 ~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~---~p~--~~~~~~ll~~~~~~~ 461 (464)
. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..++++ ... .|+ ...|...+....++|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 346899999999999998752 33688999999999999999999999998 332 332 336666665555555
Q ss_pred h
Q 047873 462 Q 462 (464)
Q Consensus 462 ~ 462 (464)
+
T Consensus 478 ~ 478 (530)
T 2ooe_A 478 D 478 (530)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=163.19 Aligned_cols=265 Identities=8% Similarity=-0.118 Sum_probs=212.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.+..+|..++..+.+.|++++|++.|++++. ..|+ ..++..++..|...|++++|++.|+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAIL-------------------QDPGDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------hCcCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3566799999999999999999999999984 2344 4899999999999999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh----------HHHHHHHHHhcCChhhHHHHHH
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV----------FNVLMHKLCKEGKIKDAQMVFD 153 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a~~~~~ 153 (464)
++.... +.+..++..++..+...|++++|...++++++..+. +... +..+...+...|++++|.+.|+
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999876 556788999999999999999999999999886533 2222 3345888999999999999999
Q ss_pred HHhhCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047873 154 EFGKRGLHA--TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231 (464)
Q Consensus 154 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 231 (464)
++.+.. +. +..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|+..|+++.+...
T Consensus 202 ~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p- 278 (365)
T 4eqf_A 202 EAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP- 278 (365)
T ss_dssp HHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 998874 22 57789999999999999999999999998764 44688999999999999999999999999988742
Q ss_pred CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC-----------CCHHhHHHHHHHHHhCCChHHHHHHHH
Q 047873 232 PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN-----------PDKITYTILLDGFCKEGDLESALDIRK 299 (464)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (464)
.+...+..+..+|...|++ ++|...|+++....+. .+...|..+..++...|+.+.+..+..
T Consensus 279 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 279 GFIRSRYNLGISCINLGAY------REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp TCHHHHHHHHHHHHHHTCC------HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3588899999999999988 5999999998764211 024556667777777777766665544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-19 Score=161.14 Aligned_cols=276 Identities=13% Similarity=0.005 Sum_probs=188.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047873 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207 (464)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 207 (464)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888889999999999999999988764 4567888999999999999999999999988764 346788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 047873 208 GLCKENRLDDAELLLHEMCERGLTPNDV-IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (464)
+|...|++++|+..|+++.+.. |+.. .+..+. .....+..+..++.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------------GSPGLTRRMSKSPV 188 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------------
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------------cchHHHHHHHHHHh
Confidence 9999999999999999988752 2211 110000 01223444555666
Q ss_pred hCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 047873 287 KEGDLESALDIRKEMIKRGIEL-DNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGF 365 (464)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 365 (464)
..|++++|...++++.+..+.. +..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|.
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6677777777777766654321 45667777777777777777777777776653 345667777777777777777777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---C--------CCHHHHHHHHHHHHhcCCHHHH
Q 047873 366 RLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV---V--------PDDITYNILLEGHCKHGNPEDF 434 (464)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--------p~~~~~~~l~~~~~~~g~~~~a 434 (464)
..|+++.+.. +.+..++..+..+|.+.|++++|...++++.+... . .+...|..+..++...|+.+.+
T Consensus 268 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 268 EAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 7777777652 22466777777777777777777777777764210 0 1356778888888888888888
Q ss_pred HHHHHh
Q 047873 435 DKLQSE 440 (464)
Q Consensus 435 ~~~~~~ 440 (464)
.++.++
T Consensus 347 ~~~~~~ 352 (365)
T 4eqf_A 347 QAANLG 352 (365)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 877664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-18 Score=154.98 Aligned_cols=267 Identities=8% Similarity=-0.119 Sum_probs=219.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
+...|..++..+...|++++|+..|++++.. .+.+..++..++..+...|++++|++.|+++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 81 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA------------------APEREEAWRSLGLTQAENEKDGLAIIALNHA 81 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567788899999999999999999999842 2234488899999999999999999999999
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH--------------HH-HHHhcCChhhHHH
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL--------------MH-KLCKEGKIKDAQM 150 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~ 150 (464)
.... +.+..++..++..+...|++++|...++++.+..+. +...+..+ .. .+...|++++|.+
T Consensus 82 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 82 RMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHH
T ss_pred HhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 8875 556788999999999999999999999999987654 44444444 33 4778899999999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047873 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL 230 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 230 (464)
.++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++.+..
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 999998774 4467889999999999999999999999998764 4467889999999999999999999999998874
Q ss_pred CCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC-----------CHHhHHHHHHHHHhCCChHHHHHHHH
Q 047873 231 TPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP-----------DKITYTILLDGFCKEGDLESALDIRK 299 (464)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (464)
+.+...+..+...+...|++ ++|...++++....... +..++..+..++...|++++|..+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQY------DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhccH------HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 23678888999999998876 69999999987753321 35677888888888888888888876
Q ss_pred HH
Q 047873 300 EM 301 (464)
Q Consensus 300 ~~ 301 (464)
..
T Consensus 311 ~~ 312 (327)
T 3cv0_A 311 QN 312 (327)
T ss_dssp CC
T ss_pred HH
Confidence 43
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8e-18 Score=149.13 Aligned_cols=277 Identities=9% Similarity=-0.036 Sum_probs=159.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|...++++.+..+. +..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 567778888889999999999999988775 446777888888888999999999999998887654 777888888889
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH--HHHhcCChhH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALIN--GLCKENRLDD 217 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~ 217 (464)
...|++++|.+.++++.... +.+...+..+.... |+......+.. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 99999999999998887763 22333333321000 00000111111 1334444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHH
Q 047873 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDI 297 (464)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 297 (464)
|.+.++++.+... .+...+..+...+...|++ ++|...++++.... +.+..++..+..++...|++++|...
T Consensus 157 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~------~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 157 CRTLLHAALEMNP-NDAQLHASLGVLYNLSNNY------DSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccH------HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444321 1344444444444444433 34555554444432 12344455555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC-----------CHhhHHHHHHHHHhcCChHHHHH
Q 047873 298 RKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKP-----------DDATYTMVIDCFCKNGDTKTGFR 366 (464)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~ 366 (464)
++++.+.... +...+..+...+...|++++|...++++.+..... +...+..+..++.+.|++++|..
T Consensus 229 ~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 229 YNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 5555554322 44555555555556666666666665555432110 24455556666666666666666
Q ss_pred HHHH
Q 047873 367 LLKE 370 (464)
Q Consensus 367 ~~~~ 370 (464)
++++
T Consensus 308 ~~~~ 311 (327)
T 3cv0_A 308 TYAQ 311 (327)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 5543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-17 Score=147.83 Aligned_cols=292 Identities=10% Similarity=0.057 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+.+-+.|+ ...|++++|.+.++++- ++.+|..++.++.+.|++++|++.|.+
T Consensus 6 ~~a~~~ll---~~~~~ld~A~~fae~~~-----------------------~~~vWs~La~A~l~~g~~~eAIdsfik-- 57 (449)
T 1b89_A 6 TSAVQVLI---EHIGNLDRAYEFAERCN-----------------------EPAVWSQLAKAQLQKGMVKEAIDSYIK-- 57 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH---HHccCHHHHHHHHHhCC-----------------------ChHHHHHHHHHHHHcCCHHHHHHHHHc--
Confidence 34444444 36788999999888763 235999999999999999999999965
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCccc
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVS 166 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 166 (464)
.++...|..++..+...|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+
T Consensus 58 ----a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a 124 (449)
T 1b89_A 58 ----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAH 124 (449)
T ss_dssp ---------------------------------------------------------CHHHHTTTTT-------CC----
T ss_pred ----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHH
Confidence 246668999999999999999999987777663 3467888899999999999999888885 367779
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047873 167 FNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCK 246 (464)
Q Consensus 167 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (464)
|+.+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|..
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 189 (449)
T ss_dssp ------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHH
Confidence 999999999999999999999976 36889999999999999999999988 278999999999999
Q ss_pred cCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh
Q 047873 247 NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKV 326 (464)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (464)
.|++ +.|......+. ..+.-...++..|.+.|++++|..+++..+... +.....|+-+.-+|++- ++
T Consensus 190 ~~ef------~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p 256 (449)
T 1b89_A 190 GKEF------RLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KP 256 (449)
T ss_dssp TTCH------HHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CH
T ss_pred cCcH------HHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CH
Confidence 8876 57755444322 233335568889999999999999999988765 34667788777777654 33
Q ss_pred HHHHHHHHHHHH-CCCCC------CHhhHHHHHHHHHhcCChHHHHHH
Q 047873 327 VEAERMLREMLK-VGLKP------DDATYTMVIDCFCKNGDTKTGFRL 367 (464)
Q Consensus 327 ~~a~~~~~~~~~-~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~ 367 (464)
++..+.++.... .+++| +...|..+...|.+.++++.|...
T Consensus 257 ~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 257 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 444333333222 22333 456788888999999999988763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.8e-16 Score=151.42 Aligned_cols=377 Identities=13% Similarity=0.133 Sum_probs=253.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcC-CCChHHHHHHHHHh-cCCCCC----------hhhHHHHHHHHHhcC
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKG-MGSSASLFASILET-RGTHLP----------GLVLDALMIVYVDLG 73 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~----------~~~~~~l~~~~~~~g 73 (464)
+++--...+++|...|.+.+|+++|++++..++ +...+.+-..++.. ....+. ......++..+...|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 344446778899999999999999999984433 22222332223222 000111 122334577788888
Q ss_pred ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 047873 74 FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFD 153 (464)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 153 (464)
.+++|..+|++... ...+...++. ..+++++|.++.+++ -++.+|..+..++...|++++|...|.
T Consensus 1064 lyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88888888887521 1122222222 567888888887755 257788888888888888888888886
Q ss_pred HHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047873 154 EFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN 233 (464)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 233 (464)
+. .|...|..++.++.+.|++++|.++|...++.. +++...+.++.+|++.+++++...+. + .++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 53 366777788888888888888888888777653 33333445888888888877533332 2 235
Q ss_pred HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047873 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313 (464)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (464)
...|..+...|...|++ ++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|
T Consensus 1195 ~ad~~~iGd~le~eg~Y------eeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMY------DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred HHHHHHHHHHHHhcCCH------HHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence 56666777777777766 5888888875 267888888888888888888887662 56788
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 047873 314 TALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKH 393 (464)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (464)
..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|+.+...|++.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 88888888888888888766542 2355667788888888888888888887777653 23445566666666653
Q ss_pred --CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 394 --GQLKNANMLLDTMLDLGVVP------DDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 394 --g~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
++..++.++|..-. +++| +...|.-++-.|.+.|+++.|...+-+
T Consensus 1328 ~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred CHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 34555555554332 2222 466788888888888888887765544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-18 Score=140.48 Aligned_cols=201 Identities=11% Similarity=-0.035 Sum_probs=165.9
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
+|+++.+|..++..+...|++++|+..|++++ ...|+. .++..+...+.+.|++++|+..
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------------------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 61 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERAL-------------------KENPQDPEALYWLARTQLKLGLVNPALEN 61 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------TTSSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 47889999999999999999999999999999 566666 9999999999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcC-----------CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRT-----------NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
|++..+.+ |.+...+..+...+... |++++|+..++++++..+. +...+..+..++...|++++|..
T Consensus 62 ~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 62 GKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHH
Confidence 99999886 55678899999999999 9999999999999998765 78899999999999999999999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 151 VFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
.|++..+.+ .+...+..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|++.|++...
T Consensus 140 ~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 140 SLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999998886 678889999999999999999999999998764 44677888999999999999999999987643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-16 Score=146.53 Aligned_cols=351 Identities=10% Similarity=-0.038 Sum_probs=206.1
Q ss_pred hhcHHHHHHHHHcCCChhhHHHHHHHHHhc--------CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC-----C-
Q 047873 94 ARGCRCLIDRMMRTNLPTVTLGFYLEILDY--------GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR-----G- 159 (464)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~- 159 (464)
...|+.+...+...|++++|++.|++.++. .......+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666677777777766665432 01113455666777777777777777777665432 0
Q ss_pred CC-CCcccHHHHHHHHHh--cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCC
Q 047873 160 LH-ATAVSFNTLINGHCK--AKNLDEGFRLKSVMEGSGMRPDVYTYSALING---LCKENRLDDAELLLHEMCERGLTPN 233 (464)
Q Consensus 160 ~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 233 (464)
.. ....++..+..++.. .+++++|...|++..+.. +-++..+..+..+ +...++.++|++.+++..+... .+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cc
Confidence 00 112344444444443 345777777777776543 2233344444333 3345666777777777666532 24
Q ss_pred HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047873 234 DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAF 313 (464)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (464)
...+..+...+...+.. .+++++|...+++..... +.+..++..+...+...|++++|...+++..+..+. +..++
T Consensus 209 ~~~~~~l~~~~~~~~~~--~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREE--GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC--------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred hHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 45555555455444332 233457777777776643 234566777777777778888888877777776443 45555
Q ss_pred HHHHHHHhc-------------------cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 314 TALISGFCR-------------------GGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 314 ~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
..+...|.. .+..+.|...+++..... +.+...+..+...+...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 555544432 234667888888887764 446678899999999999999999999999986
Q ss_pred CCCcCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCC-chhH
Q 047873 375 GHLPAV--ETYNALMN-GLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVS-DYAC 449 (464)
Q Consensus 375 ~~~~~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p-~~~~ 449 (464)
...+.. ..+..+.. .+...|++++|+..+++.++. .|+.......+. .+.+++++ +...| +..+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~~---------~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKD---------KLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHHH---------HHHHHHHHHHHHCC-CTTH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHH---------HHHHHHHHHHHhCCCCHHH
Confidence 433322 12333333 245789999999999999874 565443333222 23333333 23344 3555
Q ss_pred HHHhhccchhhhh
Q 047873 450 YTSLVSKSSKYRQ 462 (464)
Q Consensus 450 ~~~ll~~~~~~~~ 462 (464)
|..+=..+...|+
T Consensus 433 ~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 433 LHVLAFLQELNEK 445 (472)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC
Confidence 5555444444444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-17 Score=143.97 Aligned_cols=363 Identities=12% Similarity=0.038 Sum_probs=178.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
.+.+|+.|+.++.+.|++++|++.|.++ +|...|..++..+...|++++|++.++..
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----------------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----------------------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----------------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4569999999999999999999999653 34568888899999999999999988766
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcc
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 165 (464)
.+. .+++.+...++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|...|..+ .
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------T
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 664 3456778889999999999999988774 267789999999999999999999999976 4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047873 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHC 245 (464)
Q Consensus 166 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (464)
.|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHH
Confidence 7999999999999999999999998 278999999999999999999976665532 24444557889999
Q ss_pred hcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCC------CHHHHHHHHH
Q 047873 246 KNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR-GIEL------DNVAFTALIS 318 (464)
Q Consensus 246 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~ 318 (464)
+.|++ ++|..+++...... +.....|+.+...|++- ++++.++-++....+ +++| +...|..+..
T Consensus 219 k~G~~------eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 219 DRGYF------EELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HTTCH------HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HCCCH------HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 98876 69999999998764 45677888887777764 455555444433222 2222 3467888999
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHH-------------HH
Q 047873 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETY-------------NA 385 (464)
Q Consensus 319 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~ 385 (464)
.|.+.++++.|... |.+. +++..--..+.....+..+.+--.+...-..+. .|. .. +.
T Consensus 291 ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~--~l~~ll~~l~~~ld~~r 361 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTR 361 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHH
T ss_pred HHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHH--HHHHHHHHHHhccCcHH
Confidence 99999999988773 3333 233333333334444444433222222222211 111 12 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 386 LMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 386 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
.+..+.+.|...-+..+++..+.. -+..+=.++-..|...++++.-+...+.
T Consensus 362 ~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 362 AVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344455666666666666555543 2344444555667777777776666554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-17 Score=139.16 Aligned_cols=251 Identities=14% Similarity=0.102 Sum_probs=177.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
....|+++.|+..++++..............+.+++...|+++.|+..++. ..+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 445789999999888765543221234556677888889999888876644 2335667778888888888888999
Q ss_pred HHHHHHHhhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 149 QMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++.++.+.|++++|.+.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99998887765434 455566677888888999998888876 35677888888888888899999888888887
Q ss_pred CCCCCCHHHHH---HHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047873 228 RGLTPNDVIFT---TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304 (464)
Q Consensus 228 ~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (464)
.. |+..... .++..+...|+ +++|..+|+++.... +.+...++.+..++.+.|++++|...++++++.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~------~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEK------LQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTH------HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchH------HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 63 3432111 12222333343 367888888877752 346667777777778888888888888887776
Q ss_pred CCCCCHHHHHHHHHHHhccCChHH-HHHHHHHHHHC
Q 047873 305 GIELDNVAFTALISGFCRGGKVVE-AERMLREMLKV 339 (464)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 339 (464)
.+. +..++..++..+...|+.++ +..+++++.+.
T Consensus 230 ~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 230 DSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 544 66777777777777777765 45777777765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-16 Score=137.84 Aligned_cols=248 Identities=15% Similarity=0.056 Sum_probs=120.4
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCc--ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChh
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATA--VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLD 216 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 216 (464)
....|++..|+..++..... .|+. .....+.++|...|+++.|...++.. -+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 33445555555544443322 1111 12233444555555555555433221 1334444555555555555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHH
Q 047873 217 DAELLLHEMCERGLTP-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295 (464)
Q Consensus 217 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 295 (464)
+|++.++++...+..| +...+..+...+...|++ ++|++.+++ +.+...+..++.++.+.|++++|.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~------~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP------DAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH------HHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH------HHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5555555555443222 233333444455554443 355555544 234445555555555555666665
Q ss_pred HHHHHHHHcCCCCCHHH---HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047873 296 DIRKEMIKRGIELDNVA---FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMR 372 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 372 (464)
..++.+.+.. |+... ....+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555543 22111 1112223334455666666666665542 3455555666666666666666666666655
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 047873 373 SDGHLPAVETYNALMNGLCKHGQLKN-ANMLLDTMLD 408 (464)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 408 (464)
+.. +-++.++..++..+...|+.++ +.++++++.+
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 542 2245555556656666666544 3455555554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-14 Score=143.68 Aligned_cols=354 Identities=12% Similarity=0.091 Sum_probs=249.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047873 12 TMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR 91 (464)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 91 (464)
-++.++...|.+++|..+|+++. ......+.+ +...|++++|.++++++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~----------------------~~~~A~~VL---ie~i~nldrAiE~Aerv------ 1102 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD----------------------VNTSAVQVL---IEHIGNLDRAYEFAERC------ 1102 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC----------------------CHHHHHHHH---HHHHhhHHHHHHHHHhc------
Confidence 35677888999999999999863 111222222 22678888888888864
Q ss_pred CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHH
Q 047873 92 IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (464)
.++.+|..++.++...|++++|++.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 24668888888888889999998888664 377788888888888999999998888776653 3444455688
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047873 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251 (464)
Q Consensus 172 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (464)
.+|++.+++++...+ ++ .++...|..+...|...|++++|..+|... ..|..+...+.+.|++
T Consensus 1175 faYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~- 1237 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY- 1237 (1630)
T ss_pred HHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCH-
Confidence 888888887753333 22 456667777888888889999999888885 3688888888888765
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047873 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331 (464)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (464)
++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.
T Consensus 1238 -----q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1238 -----QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred -----HHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5888888876 35578888888888888888888766542 2256677788888888899999998
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCc------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047873 332 MLREMLKVGLKPDDATYTMVIDCFCKN--GDTKTGFRLLKEMRSDGHLP------AVETYNALMNGLCKHGQLKNANMLL 403 (464)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 403 (464)
+++...... +-....|+.+...|++. ++..++.+.|..-.. ++| +...|..+.-.|.+.|+++.|....
T Consensus 1302 LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1302 MLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 888877654 23334565555555543 345555555554333 222 4567888888888888888887322
Q ss_pred -------------HHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHhcC
Q 047873 404 -------------DTMLDLGVVPDDITYNILLEGHCKHG---------------NPEDFDKLQSEKG 442 (464)
Q Consensus 404 -------------~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~ 442 (464)
+.... -..|+..|...+.-|...+ +++.+.+++++.+
T Consensus 1379 ~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~ 1443 (1630)
T 1xi4_A 1379 MNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 1443 (1630)
T ss_pred HhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcC
Confidence 12111 2346777777777777666 7777777777543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-16 Score=144.67 Aligned_cols=381 Identities=11% Similarity=0.012 Sum_probs=252.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHh
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFL---DDAIQCFRLLRK 87 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~ 87 (464)
..+...+.+.|++++|+++|+++... + +..++..+..+|...|+. ++|+++|++...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-----------------g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~ 66 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-----------------G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD 66 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------T---CCTGGGTCC------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-----------------C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh
Confidence 34677788999999999999998742 1 234556677777778888 999999998875
Q ss_pred CCCCCChhcHHHHHHHHHcCC-----ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh---HHHHHHHHhhCC
Q 047873 88 HYFRIPARGCRCLIDRMMRTN-----LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKD---AQMVFDEFGKRG 159 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~ 159 (464)
. ++.++..+...+...+ ++++|...|++..+.|. +..+..|...|...+..+. +.+.+......|
T Consensus 67 ~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g 139 (452)
T 3e4b_A 67 T----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG 139 (452)
T ss_dssp --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT
T ss_pred C----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC
Confidence 4 5567777777565555 77899999999998763 3477788888887765444 455555555444
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHH
Q 047873 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN---RLDDAELLLHEMCERGLTPNDVI 236 (464)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~ 236 (464)
+......+...|...+.++.+......+.+.-...++..+..|..+|...| +.++|++.|++..+.|. ++...
T Consensus 140 ---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~ 215 (452)
T 3e4b_A 140 ---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQR 215 (452)
T ss_dssp ---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHH
T ss_pred ---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHH
Confidence 456777888888888866665555333332211233447888999999999 89999999999999874 35555
Q ss_pred HHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-H--HhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047873 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDG-F--CKEGDLESALDIRKEMIKRGIELDNVAF 313 (464)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (464)
+..+...|.... ....++++|+..|++.. . -+...+..+... + ...+++++|...|++..+.| +...+
T Consensus 216 ~~~Lg~~y~~g~--~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 216 VDSVARVLGDAT--LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp HHHHHHHHTCGG--GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHhCCC--CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 566666664431 11356789999999987 3 345566667766 4 46899999999999999886 56777
Q ss_pred HHHHHHHhccC-----ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCHHHHH
Q 047873 314 TALISGFCRGG-----KVVEAERMLREMLKVGLKPDDATYTMVIDCFCK----NGDTKTGFRLLKEMRSDGHLPAVETYN 384 (464)
Q Consensus 314 ~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (464)
..+...|. .| ++++|..+|++.. . .+...+..+...|.. ..++++|...|++..+.|. .....
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~ 358 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADF 358 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHH
Confidence 77877776 55 9999999999988 3 366777788877776 4499999999999998753 44566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 385 ALMNGLCK----HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 385 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
.+...|.. ..+..+|...++...+.|. ++.......+......++.++|.++.++
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67777764 5689999999999998763 2332222222222233355556666654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-18 Score=165.47 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHH---CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 047873 310 NVAFTALISGFCRGGKVVEAERMLREMLK---VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNAL 386 (464)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 386 (464)
..+|+++|.+|++.|++++|..+|.+|.+ .|+.||..|||.||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34666666666666666666666666543 356667777777777777777777777777777666667777777777
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047873 387 MNGLCKHGQL-KNANMLLDTMLDLGVVPDDITYNILLEGHCKH 428 (464)
Q Consensus 387 ~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 428 (464)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 7776666653 56666777776666777777776666555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-15 Score=136.63 Aligned_cols=255 Identities=10% Similarity=0.004 Sum_probs=208.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCC-hhHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGF-LDDAIQCF 82 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~-~~~A~~~~ 82 (464)
....+|+.+..++...|++++|++.|++++ ...|+. .+|+.+..++...|+ +++|+..|
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al-------------------~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~ 155 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAI-------------------ELNAANYTVWHFRRVLLKSLQKDLHEEMNYI 155 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHH-------------------HhCccCHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 346789999999999999999999999999 456666 999999999999997 99999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
+++...+ +-+..+|..+..++...|++++|+..|+++++..+. +..+|..+..++...|++++|+..|+++.+.+ +.
T Consensus 156 ~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~ 232 (382)
T 2h6f_A 156 TAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VR 232 (382)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TT
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC
Confidence 9999986 557889999999999999999999999999998876 89999999999999999999999999999875 44
Q ss_pred CcccHHHHHHHHHh-cCChhHH-----HHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCH
Q 047873 163 TAVSFNTLINGHCK-AKNLDEG-----FRLKSVMEGSGMRPDVYTYSALINGLCKEN--RLDDAELLLHEMCERGLTPND 234 (464)
Q Consensus 163 ~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~ 234 (464)
+...|+.+..++.. .|..++| +..+++.+... +-+...|..+..++...| ++++|++.+..+ +. .+.+.
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~ 309 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSP 309 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCH
Confidence 77889999999999 6665888 48888887764 346778888999999888 689999999888 43 23467
Q ss_pred HHHHHHHHHHHhcCCc--ccccC-HHHHHHHHHHH-HhCCCCCC-HHhHHHHHHHHH
Q 047873 235 VIFTTLIDGHCKNGRI--DMAGD-MKEARKIVDEM-CTNGLNPD-KITYTILLDGFC 286 (464)
Q Consensus 235 ~~~~~l~~~~~~~~~~--~~~~~-~~~a~~~~~~~-~~~~~~~~-~~~~~~l~~~~~ 286 (464)
..+..+..+|.+.++. +..++ +++|+.+++++ .+. .|. ...|..+...+.
T Consensus 310 ~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 310 YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 7888888888886421 00112 37899999998 654 343 445555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.6e-18 Score=160.48 Aligned_cols=150 Identities=15% Similarity=0.217 Sum_probs=126.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHhh---CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 047873 129 VYVFNVLMHKLCKEGKIKDAQMVFDEFGK---RGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSAL 205 (464)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (464)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC------HHhH
Q 047873 206 INGLCKENRL-DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD------KITY 278 (464)
Q Consensus 206 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 278 (464)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+ +.+++.++++ ..+..|+ ..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----------~~vL~~Vrkv-~P~f~p~~~~~~~~~t~ 275 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----------ATVLKAVHKV-KPTFSLPPQLPPPVNTS 275 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----------HHHHHHHGGG-CCCCCCCCCCCCCCCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----------HHHHHHHHHh-CcccCCCCCCcccccch
Confidence 9999999985 7899999999999999999999999877666 3556666655 3333333 3344
Q ss_pred HHHHHHHHhCC
Q 047873 279 TILLDGFCKEG 289 (464)
Q Consensus 279 ~~l~~~~~~~~ 289 (464)
..|...|.+.+
T Consensus 276 ~LL~dl~s~d~ 286 (1134)
T 3spa_A 276 KLLRDVYAKDG 286 (1134)
T ss_dssp TTTHHHHCCCS
T ss_pred HHHHHHHccCC
Confidence 55556666544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-16 Score=127.41 Aligned_cols=201 Identities=14% Similarity=-0.021 Sum_probs=165.1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 56 HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
+++...+..+...+.+.|++++|+..|++..+.+ |.+...+..+...+.+.|++++|+..++++++..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4555888999999999999999999999999886 567889999999999999999999999999998765 78899999
Q ss_pred HHHHHhc-----------CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 047873 136 MHKLCKE-----------GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204 (464)
Q Consensus 136 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 204 (464)
..++... |++++|...|++..+.. +.+...+..+..++...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998874 3467788999999999999999999999999876 68889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 205 LINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
+..++...|++++|+..|++..+..+ .+...+..+...+...|++ ++|+..+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKA------EEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCH------HHHHHHHHHHhh
Confidence 99999999999999999999998743 3677888889999998887 488888887643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-16 Score=131.22 Aligned_cols=203 Identities=8% Similarity=-0.037 Sum_probs=160.3
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
..++.+|..++..+...|++++|++.|++++ ...|+. .++..++..+...|++++|++.|
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l-------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 80 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAI-------------------EENKEDAIPYINFANLLSSVNELERALAFY 80 (243)
T ss_dssp ----------------------CCTTHHHHH-------------------TTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHH-------------------HhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566788899999999999999999999998 444544 89999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
+++.... +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.
T Consensus 81 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 157 (243)
T 2q7f_A 81 DKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-EN 157 (243)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Cc
Confidence 9998875 456788899999999999999999999999987654 78889999999999999999999999988764 44
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|.+.++++.+..
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 67788899999999999999999999988764 3467889999999999999999999999998874
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-15 Score=127.73 Aligned_cols=202 Identities=13% Similarity=-0.058 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
+..|..++..+...|++++|++.|++++.. .+.+..++..++..|...|++++|++.|+++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 98 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI------------------DPSSADAHAALAVVFQTEMEPKLADEEYRKAL 98 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc------------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 678999999999999999999999999842 12334889999999999999999999999998
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcc
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP-SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 165 (464)
... +.+...+..++..+...|++++|...++++.+.+..| +...+..+..++...|++++|.+.+++..+.. +.+..
T Consensus 99 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 176 (252)
T 2ho1_A 99 ASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPS 176 (252)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHH
T ss_pred HHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHH
Confidence 875 4467888999999999999999999999998832223 56788889999999999999999999988764 34577
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 166 SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 166 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999998764 4567788889999999999999999999998873
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-15 Score=128.39 Aligned_cols=199 Identities=9% Similarity=0.034 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
|...+...+..+...|++++|++.|++++. ..|+. .++..++..|...|++++|++.|++
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 62 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEA-------------------KKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHH-------------------TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345677788889999999999999999883 34555 6888889999999999999999999
Q ss_pred HHhCCCCCChh----cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 85 LRKHYFRIPAR----GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 85 ~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
+.... ++.. ++..++..+...|++++|+..++++.+..+. +..++..+..++...|++++|...|++..+..
T Consensus 63 a~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 138 (272)
T 3u4t_A 63 YFSKV--NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT- 138 (272)
T ss_dssp HHTTS--CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-
T ss_pred HHhcc--CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-
Confidence 88742 3332 3788888888999999999999998887654 67788888888999999999999998887763
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHC
Q 047873 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR---LDDAELLLHEMCER 228 (464)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 228 (464)
+.+...+..+...+...+++++|...++.+.+.. +.+...+..+..++...|+ +++|...+++..+.
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 3355666666634445568888888888887653 3346677777777777777 77788888777654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-15 Score=124.75 Aligned_cols=205 Identities=11% Similarity=-0.078 Sum_probs=175.9
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
-|.++.+|..++..+...|++++|++.|++++. ..|+ ..++..++..|...|++++|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 64 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALK-------------------SDPKNELAWLVRAEIYQYLKVNDKAQES 64 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------------------hCccchHHHHHHHHHHHHcCChHHHHHH
Confidence 356788999999999999999999999999984 2333 48899999999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcC-CChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGYSP-SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRG 159 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (464)
|+++.... +.+...+..++..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+..
T Consensus 65 ~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 65 FRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99998875 45677889999999999 99999999999999832222 36788889999999999999999999988764
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 160 LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
+.+...+..+...+...|++++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 144 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 144 -PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 34577889999999999999999999999887642156777888888889999999999999998865
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-15 Score=131.11 Aligned_cols=255 Identities=8% Similarity=-0.081 Sum_probs=207.3
Q ss_pred CCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC-hhhHHHHHHHHHhcCCCCChhhH
Q 047873 55 THLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL-PTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 55 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
..|+. .+|..+..++.+.|++++|++.|+++.... |-+..+|..+..++...|+ +++|+..|+++++..+. +..+|
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~ 169 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVW 169 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 34555 788999999999999999999999999886 5577889999999999997 99999999999998876 88999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK- 211 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 211 (464)
..+..++...|++++|+..|+++.+.+ +.+...|..+..++...|++++|+..++++++.. +.+...|+.+..++..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999875 4578889999999999999999999999999875 3478889999999999
Q ss_pred cCChhHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 047873 212 ENRLDDA-----ELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFC 286 (464)
Q Consensus 212 ~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (464)
.|..++| ++.|++..+.... +...|..+...+...|.. ++++|+..+.++ .. .+.+...+..+..+|.
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~----~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLS----KYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYE 320 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGG----GCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCcc----chHHHHHHHHHh-cc-CCCCHHHHHHHHHHHH
Confidence 6665777 5889888887433 677888888888887731 236888888887 33 3445678888888888
Q ss_pred hCC---------ChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHh
Q 047873 287 KEG---------DLESALDIRKEM-IKRGIELDNVAFTALISGFC 321 (464)
Q Consensus 287 ~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 321 (464)
+.| ..++|..+++++ .+.++. ....|..+...+.
T Consensus 321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 321 DMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 764 258899999888 565322 4455655555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-15 Score=127.06 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC--CC---
Q 047873 200 YTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--PD--- 274 (464)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--- 274 (464)
..+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++ ++|...+++....... ++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~------~~A~~~~~~a~~~~~~~~~~~~~ 77 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEY------ETAISTLNDAVEQGREMRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccH------HHHHHHHHHHHHhCcccccchHH
Confidence 445566666667777777777777666655 4566666666666666655 4677666666553211 11
Q ss_pred -HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 047873 275 -KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVID 353 (464)
Q Consensus 275 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 353 (464)
..++..+..++...|++++|...++++.+... +. ..+...|++++|...++++.... +.+...+..+..
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 147 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR--TA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc--hh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 46788889999999999999999999998743 42 34566788999999999998864 335667888999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047873 354 CFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPED 433 (464)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 433 (464)
.+...|++++|...|+++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..++...|++++
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999998863 3467889999999999999999999999998753 3468889999999999999999
Q ss_pred HHHHHHh-cCCC------CchhHHHHhhc
Q 047873 434 FDKLQSE-KGLV------SDYACYTSLVS 455 (464)
Q Consensus 434 a~~~~~~-~~~~------p~~~~~~~ll~ 455 (464)
|.+.+++ +.+. |+.......+.
T Consensus 226 A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 226 ALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 9998886 3444 66554444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-14 Score=124.82 Aligned_cols=249 Identities=9% Similarity=-0.072 Sum_probs=191.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC--hhhHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS--VYVFNVLMH 137 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 137 (464)
..+...+..+...|++++|+..|+++.+.. |.+...+..+...+...|++++|+..++++++....++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 456677888999999999999999999886 44667899999999999999999999999998432222 234888999
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 217 (464)
++...|++++|.+.|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998864 4467889999999999999999999999998763 4466777777735555669999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC-CCCC------HHhHHHHHHHHHhCCC
Q 047873 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG-LNPD------KITYTILLDGFCKEGD 290 (464)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~ 290 (464)
|.+.|+++.+... .+...+..+...+...++.. .+++|...+++..... ..|+ ..++..+...|...|+
T Consensus 161 A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 161 ADSSFVKVLELKP-NIYIGYLWRARANAAQDPDT---KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTC---SSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcch---hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 9999999998743 24677777888887777610 1136777777765531 1122 2467778888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047873 291 LESALDIRKEMIKRGIELDNVAFTAL 316 (464)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (464)
+++|...++++.+..+. +......+
T Consensus 237 ~~~A~~~~~~al~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 237 KVKADAAWKNILALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-HHHHHHHh
Confidence 88888888888887543 44444444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-15 Score=125.93 Aligned_cols=225 Identities=11% Similarity=-0.015 Sum_probs=147.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC--C----hhhHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP--S----VYVFN 133 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 133 (464)
..+..+...+...|++++|+..|++..... .+..++..++..+...|++++|...++++++..+.. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 566777778888888888888888887776 566777888888888888888888888877644321 1 46677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 213 (464)
.+..++...|++++|...|++..+. .|+ ...+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 7777788888888888888777765 233 234555666777777777766542 223455666666777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHH
Q 047873 214 RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLES 293 (464)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 293 (464)
++++|...|+++.+... .+...+..+...+...|++ ++|...+++..... +.+...+..+..++...|++++
T Consensus 154 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~------~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSF------PEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHH
Confidence 77777777777665532 2455555666666665554 46666666665542 2234555556666666666666
Q ss_pred HHHHHHHHHHc
Q 047873 294 ALDIRKEMIKR 304 (464)
Q Consensus 294 a~~~~~~~~~~ 304 (464)
|...++...+.
T Consensus 226 A~~~~~~a~~~ 236 (258)
T 3uq3_A 226 ALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666655544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-14 Score=120.83 Aligned_cols=226 Identities=14% Similarity=0.013 Sum_probs=196.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVD----LGFLDDAI 79 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 79 (464)
|.++.++..++..+...|++++|++.|++++. +.+..++..+...|.. .+++++|+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~ 62 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--------------------LKENSGCFNLGVLYYQGQGVEKNLKKAA 62 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHcCCCcCCCHHHHH
Confidence 46788999999999999999999999999983 2234788889999999 99999999
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHc----CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhhHHHH
Q 047873 80 QCFRLLRKHYFRIPARGCRCLIDRMMR----TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK----EGKIKDAQMV 151 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 151 (464)
+.|++..+.+ +..++..+...+.. .+++++|+..|++..+.+ ++.++..+...|.. .+++++|...
T Consensus 63 ~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 136 (273)
T 1ouv_A 63 SFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEY 136 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999998886 67788899999999 999999999999999875 78889999999999 9999999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHH
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK----ENRLDDAELLLH 223 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 223 (464)
|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|+..|+
T Consensus 137 ~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 137 FTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 99998875 56778888888888 999999999999998764 56778889999999 999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCcccccCHHHHHHHHHHHHhCC
Q 047873 224 EMCERGLTPNDVIFTTLIDGHCK----NGRIDMAGDMKEARKIVDEMCTNG 270 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~ 270 (464)
+..+.+ +...+..+...|.. .+++ ++|...|++..+.+
T Consensus 211 ~a~~~~---~~~a~~~l~~~~~~g~~~~~~~------~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 211 KACELE---NGGGCFNLGAMQYNGEGVTRNE------KQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTT---CHHHHHHHHHHHHTTSSSSCCS------TTHHHHHHHHHHHT
T ss_pred HHHhCC---CHHHHHHHHHHHHcCCCcccCH------HHHHHHHHHHHHcC
Confidence 999874 36677778888887 6665 59999999998865
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-12 Score=125.36 Aligned_cols=427 Identities=9% Similarity=0.032 Sum_probs=290.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---hhHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGF---LDDAIQ 80 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 80 (464)
|.+..+|..++..+...|.++.|..+|++++. ..+.....|...+..-.+.|+ ++.+..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~------------------~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHD------------------RFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 67899999999999999999999999999995 344455899999999999999 999999
Q ss_pred HHHHHHhCCC-CCChhcHHHHHHHHHcCCCh--------hhHHHHHHHHHh-cCC-CC-ChhhHHHHHHHHHh-------
Q 047873 81 CFRLLRKHYF-RIPARGCRCLIDRMMRTNLP--------TVTLGFYLEILD-YGY-SP-SVYVFNVLMHKLCK------- 141 (464)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~------- 141 (464)
+|++...... +|+...|...+....+.+.. +...++|+.++. .|. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999988751 37788888877666554443 334477777664 355 44 45688877765442
Q ss_pred --cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh-------------cCChhHHHHHHHHHhhC--CC----C----
Q 047873 142 --EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK-------------AKNLDEGFRLKSVMEGS--GM----R---- 196 (464)
Q Consensus 142 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~----~---- 196 (464)
.++++.+.++|+.........-..+|......-.. ..+++.|...+..+... ++ +
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 34577889999998853211112233222111111 12234444555443211 11 1
Q ss_pred -------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 047873 197 -------P-----D---VYTYSALINGLCKEN-------RLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAG 254 (464)
Q Consensus 197 -------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (464)
| + ...|...+..--..+ ..+.+..+|++..... +-....|......+...|+.+
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~--- 360 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDS--- 360 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCT---
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHH---
Confidence 1 0 123444443322222 1234567788887763 347788888888888877763
Q ss_pred CHHHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC---------CC------------CHHH
Q 047873 255 DMKEAR-KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI---------EL------------DNVA 312 (464)
Q Consensus 255 ~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~ 312 (464)
+|. .+|++.... .+.+...|...+....+.|+++.|.++|+.++.... .| ...+
T Consensus 361 ---~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 361 ---TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp ---THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 786 999999875 345666777888888899999999999999886410 12 1346
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 047873 313 FTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN-GDTKTGFRLLKEMRSDGHLPAVETYNALMNGLC 391 (464)
Q Consensus 313 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (464)
|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|+...+. ++-+...|..++....
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 8888888888999999999999998861122334454444443444 4599999999999987 4446777888899888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCchhHHHHhhccc
Q 047873 392 KHGQLKNANMLLDTMLDLGVVP--DDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSDYACYTSLVSKS 457 (464)
Q Consensus 392 ~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~~~~~~~ll~~~ 457 (464)
..|+.+.|..+|++.+.....+ ....|...+.--.+.|+.+.+.++.++ ....|+......+.+.|
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 9999999999999998753222 356788888888899999999999887 34456554444444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-14 Score=133.05 Aligned_cols=345 Identities=13% Similarity=0.029 Sum_probs=233.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCh---hhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP---TVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+...+.+.|++++|+++|++..+.+ +..++..+...+...|++ ++|..+|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677888999999999999998775 345566677777778888 9999999999864 5666777777566
Q ss_pred hcC-----ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChh---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 047873 141 KEG-----KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD---EGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212 (464)
Q Consensus 141 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (464)
..+ ++++|...|++..+.| +...+..+...|...+... ++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 655 7889999999998876 3447778888887765543 4555555555444 345667788888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhC----
Q 047873 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKE---- 288 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 288 (464)
+.++++......+.+.-...++..+..+...|...|.. .+.++|+..|++....|. ++...+..+...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~---~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQP---EQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSS
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---ccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCC
Confidence 86665554433333221122444778888888887721 135799999999999874 4555556677777554
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--hccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-----C
Q 047873 289 GDLESALDIRKEMIKRGIELDNVAFTALISG-F--CRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG-----D 360 (464)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~ 360 (464)
+++++|...|+... .+ ++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 68999999999988 43 55667777666 4 56899999999999999876 6677788888887 55 9
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 047873 361 TKTGFRLLKEMRSDGHLPAVETYNALMNGLCK----HGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCK----HGNPE 432 (464)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 432 (464)
+++|...|++.. . -++..+..+...|.. ..++++|...|++..+.| +......+...|.. ..+++
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHH
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHH
Confidence 999999999988 3 467778888887776 449999999999998765 34455566666653 45888
Q ss_pred HHHHHHHh
Q 047873 433 DFDKLQSE 440 (464)
Q Consensus 433 ~a~~~~~~ 440 (464)
+|..++++
T Consensus 376 ~A~~~~~~ 383 (452)
T 3e4b_A 376 NAYVFSQL 383 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89998886
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-15 Score=130.43 Aligned_cols=190 Identities=10% Similarity=-0.062 Sum_probs=121.8
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 95 (464)
+...|++++|++.|++++.... ..+|+. .++..++..+...|++++|+..|+++...+ +.+..
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~ 78 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRA---------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPE 78 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSC---------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred cCccchHHHHHHHHHHHHhccc---------------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHH
Confidence 3456778888888888773210 011222 677777778888888888888888877765 44566
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 047873 96 GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175 (464)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (464)
++..++..+...|++++|...++++++..+. +..++..+..++...|++++|...|+++.+. .|+.......+..+.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~ 155 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAE 155 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 7777777777778888888877777776543 5667777777777777777777777777665 344444444444455
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 176 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
..|++++|...++...... +++...+ .++..+...++.++|...+....+
T Consensus 156 ~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc
Confidence 5667777777776555432 2232222 355555666666666666666544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-13 Score=116.78 Aligned_cols=226 Identities=12% Similarity=-0.027 Sum_probs=149.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMR----TNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
.++..+...|...|++++|++.|++..+.+ +..++..+...+.. .+++++|...|++..+.+ ++..+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 667777777888888888888888877733 45667777777777 788888888888877764 66677777
Q ss_pred HHHHHh----cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047873 136 MHKLCK----EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVYTYSALIN 207 (464)
Q Consensus 136 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 207 (464)
...+.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 777777 777777777777776653 55666677777776 777777777777776654 4455666666
Q ss_pred HHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 047873 208 GLCK----ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283 (464)
Q Consensus 208 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (464)
.|.. .+++++|+..|++..+.+ +...+..+...|..... ..+++++|+..|++..+.+. ...+..+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~--~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~ 226 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEG--ATKNFKEALARYSKACELEN---GGGCFNLGA 226 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCS--SCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 6666 677777777777766653 34555555555555100 01233566666666665432 445555556
Q ss_pred HHHh----CCChHHHHHHHHHHHHcC
Q 047873 284 GFCK----EGDLESALDIRKEMIKRG 305 (464)
Q Consensus 284 ~~~~----~~~~~~a~~~~~~~~~~~ 305 (464)
+|.. .+++++|...+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6665 666666666666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-15 Score=129.54 Aligned_cols=224 Identities=12% Similarity=-0.066 Sum_probs=144.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCC---CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYF---RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+...|++++|+..|+++..... +.+..++..++..+...|++++|...++++++..+. +..++..+..++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 3455788888888888877631 123566777888888888888888888888877654 677888888888888888
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
++|.+.|++..+.. +.+..++..+...+...|++++|...++.+.+. .|+.......+..+...|++++|...+.+.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888877753 335667777777888888888888888877764 344444444445556667777777777666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 047873 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP---DKITYTILLDGFCKEGDLESALDIRKEMI 302 (464)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (464)
.... +++...+. +...+...++. ++|...+++........ +..++..+..++...|++++|...++++.
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISE------QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCH------HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCH------HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6542 22323332 44444443332 46666666654431110 12444555555555555555555555555
Q ss_pred Hc
Q 047873 303 KR 304 (464)
Q Consensus 303 ~~ 304 (464)
..
T Consensus 243 ~~ 244 (275)
T 1xnf_A 243 AN 244 (275)
T ss_dssp TT
T ss_pred hC
Confidence 54
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-13 Score=114.68 Aligned_cols=205 Identities=10% Similarity=-0.071 Sum_probs=173.5
Q ss_pred CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH
Q 047873 56 HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134 (464)
Q Consensus 56 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (464)
.|+. .++..++..+...|++++|++.|+++.... +.+...+..++..+...|++++|...++++.+..+. +..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 81 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNN 81 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 3444 888999999999999999999999998875 456788999999999999999999999999987654 7888999
Q ss_pred HHHHHHhc-CChhhHHHHHHHHhhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 047873 135 LMHKLCKE-GKIKDAQMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212 (464)
Q Consensus 135 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (464)
+...+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 99999999 99999999999998732223 35678889999999999999999999988764 34578889999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
|++++|...++++.+.....+...+..+...+...|+. +.+..+++.+...
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA------QAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHh
Confidence 99999999999998864324677777777777887765 6899999888754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-14 Score=115.66 Aligned_cols=167 Identities=11% Similarity=-0.004 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.++..|..++.+|...|++++|++.|++++ ...|+. .++..++.+|.+.|++++|+..++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al-------------------~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~ 63 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVL-------------------KADPNNVETLLKLGKTYMDIGLPNDAIESLK 63 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 356777888888888888888888888877 334555 777788888888888888888888
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (464)
...... +.+...+..+...+...++++.+...+.+..+..+. +..++..+..++...|++++|++.|++..+.. +.+
T Consensus 64 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~ 140 (184)
T 3vtx_A 64 KFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGF 140 (184)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chh
Confidence 777664 345566666777777777788887777777776554 66677777777777777777777777776653 335
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 164 AVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
..+|..+..+|.+.|++++|.+.|++..+.
T Consensus 141 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 141 IRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 566677777777777777777777776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-14 Score=121.03 Aligned_cols=201 Identities=14% Similarity=0.047 Sum_probs=120.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
....+..++..+...|++++|+..|+++.... +.+...+..++..+...|++++|...++++.+..+. +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 33667777778888888888888888887764 445667777777788888888888888887776543 6677777777
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 217 (464)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 7777788888887777776653 3345566666667777777777777777666543 2345566666666667777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 218 AELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
|...++++.+... .+...+..+...+...|+++ +|...++++...
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~------~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENRE------KALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTT------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHH------HHHHHHHHHHcc
Confidence 7777666665432 24455555555555555553 566666655553
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-13 Score=117.59 Aligned_cols=207 Identities=14% Similarity=-0.042 Sum_probs=176.3
Q ss_pred CCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh
Q 047873 54 GTHLPG--LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131 (464)
Q Consensus 54 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (464)
...|+. .++..++..+...|++++|++.|+++.... +.+..++..++..+...|++++|.+.++++.+..+. +...
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 107 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARV 107 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHH
Confidence 334443 778889999999999999999999998875 456788999999999999999999999999987654 7888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLC 210 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (464)
+..+...+...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 9999999999999999999999998732233 45678888999999999999999999988764 346788899999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC
Q 047873 211 KENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270 (464)
Q Consensus 211 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 270 (464)
..|++++|...++++.+.. +.+...+..+...+...|++ ++|...++++....
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~------~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDR------DTAASYGLQLKRLY 239 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCH------HHHHHHHHHHHHHC
Confidence 9999999999999998764 34677788888888888876 69999999998753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=133.39 Aligned_cols=279 Identities=12% Similarity=-0.017 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCChhHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-----LVLDALMIVYVDLGFLDDAIQ 80 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~ 80 (464)
....+..++..+...|++++|+..|++++.. .|++ .++..+...|...|++++|+.
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 107 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA-------------------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQ 107 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-------------------cccChhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445566777788888888888888888742 2222 467777788888888888888
Q ss_pred HHHHHHhC----C-CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCC------
Q 047873 81 CFRLLRKH----Y-FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-----YSPSVYVFNVLMHKLCKEGK------ 144 (464)
Q Consensus 81 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~------ 144 (464)
.|++.... + .+....++..+...+...|++++|...++++++.. ......++..+...+...|+
T Consensus 108 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 187 (411)
T 4a1s_A 108 YHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRN 187 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccccc
Confidence 88776543 1 12234556777777778888888888877766531 11124456667777777777
Q ss_pred -----------hhhHHHHHHHHhhC----CC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HHHHH
Q 047873 145 -----------IKDAQMVFDEFGKR----GL-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-RPD----VYTYS 203 (464)
Q Consensus 145 -----------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 203 (464)
+++|.+.+++..+. +. .....++..+...+...|++++|...+++..+... .++ ..++.
T Consensus 188 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (411)
T 4a1s_A 188 PGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANS 267 (411)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 77777766665332 10 11123555666666677777777776666553210 001 22455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 047873 204 ALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLD 283 (464)
Q Consensus 204 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (464)
.+..+|...|++++|...+++..+.... .+ .......++..+..
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~al~~~~~---------------~~---------------------~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 268 NLGNSHIFLGQFEDAAEHYKRTLALAVE---------------LG---------------------EREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHH---------------TT---------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHH---------------cC---------------------CHHHHHHHHHHHHH
Confidence 6666666677777776666665443100 00 00012334445555
Q ss_pred HHHhCCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 284 GFCKEGDLESALDIRKEMIKRGI-----ELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
++...|++++|...+++..+... .....++..+...+...|++++|...+++..+.
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 55555666655555555443210 001235555666666666666666666666553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=133.02 Aligned_cols=305 Identities=14% Similarity=0.017 Sum_probs=186.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP--GLVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
+.+...+...+..+...|++++|+..|++++.... ..+. ..++..+...|...|++++|+..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 69 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT----------------EDLKTLSAIYSQLGNAYFYLHDYAKALEY 69 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc----------------ccHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45677888899999999999999999999985311 1111 25778889999999999999999
Q ss_pred HHHHHhC----CCC-CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCC-------
Q 047873 82 FRLLRKH----YFR-IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PS----VYVFNVLMHKLCKEGK------- 144 (464)
Q Consensus 82 ~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~------- 144 (464)
|++.... +.+ ....++..+...+...|++++|...++++++.... ++ ..++..+...+...|+
T Consensus 70 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 149 (406)
T 3sf4_A 70 HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 149 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc
Confidence 9886543 211 12456777888888999999999998887753211 12 3467778888888888
Q ss_pred -------------hhhHHHHHHHHhhC----CC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HHH
Q 047873 145 -------------IKDAQMVFDEFGKR----GL-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-RPD----VYT 201 (464)
Q Consensus 145 -------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~ 201 (464)
+++|...+++.... +. +....++..+...+...|++++|...+++..+... .++ ..+
T Consensus 150 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (406)
T 3sf4_A 150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229 (406)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 88888777765432 10 11123566677777777777777777776653210 111 235
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 047873 202 YSALINGLCKENRLDDAELLLHEMCERGLT-PNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTI 280 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (464)
+..+..++...|++++|...+++..+.... .+ ......++..
T Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------------~~~~~~~~~~ 272 (406)
T 3sf4_A 230 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-------------------------------------RAVEAQSCYS 272 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC-------------------------------------chHHHHHHHH
Confidence 666777777777777777777766543100 00 0001334444
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHhccCChHHHHHHHHHHHHC----CC-CCCHhhHHH
Q 047873 281 LLDGFCKEGDLESALDIRKEMIKRGIE-----LDNVAFTALISGFCRGGKVVEAERMLREMLKV----GL-KPDDATYTM 350 (464)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 350 (464)
+...+...|++++|...+++..+.... ....++..+...+...|++++|...+++..+. +. .....++..
T Consensus 273 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 352 (406)
T 3sf4_A 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLN 352 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 555555555555555555554432100 01334555566666666666666666655432 10 111334555
Q ss_pred HHHHHHhcCCh
Q 047873 351 VIDCFCKNGDT 361 (464)
Q Consensus 351 ll~~~~~~~~~ 361 (464)
+...+...|+.
T Consensus 353 l~~~~~~~g~~ 363 (406)
T 3sf4_A 353 LSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhHh
Confidence 55556555554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-11 Score=115.17 Aligned_cols=403 Identities=11% Similarity=0.019 Sum_probs=269.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC---hhhHHHHHHHHHhcCC-CCChhh
Q 047873 56 HLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL---PTVTLGFYLEILDYGY-SPSVYV 131 (464)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~ 131 (464)
+-+...|..++..+.+.+.++.+..+|+++...- |.....|...+..-.+.++ .+.+..+|++.+...+ .|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3445999999999999999999999999999885 6678889999988888898 9999999999998652 368889
Q ss_pred HHHHHHHHHhcCCh--------hhHHHHHHHHhh-CCC-CCC-cccHHHHHHHHHh---------cCChhHHHHHHHHHh
Q 047873 132 FNVLMHKLCKEGKI--------KDAQMVFDEFGK-RGL-HAT-AVSFNTLINGHCK---------AKNLDEGFRLKSVME 191 (464)
Q Consensus 132 ~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 191 (464)
|...+....+.++. +...++|+.... .|. .++ ...|...+..... .++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888777666654 234477777554 355 443 4677777765432 345678889999988
Q ss_pred hCCCCCCHHHHHHHHHHHHh-------------cCChhHHHHHHHHHHHC--CC----C-----------C--C------
Q 047873 192 GSGMRPDVYTYSALINGLCK-------------ENRLDDAELLLHEMCER--GL----T-----------P--N------ 233 (464)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~----~-----------~--~------ 233 (464)
......-..+|......-.. ..+++.|...+.++... ++ + | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53211112233221111111 12234455555443221 11 1 1 0
Q ss_pred HHHHHHHHHHHHhcCC-cccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHH-HHHHHHHHcCCCCCHH
Q 047873 234 DVIFTTLIDGHCKNGR-IDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL-DIRKEMIKRGIELDNV 311 (464)
Q Consensus 234 ~~~~~~l~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 311 (464)
...|...+..-...+. .+.......+..+|++.+... +-....|...+..+...|+.++|. .+++...... +.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHH
Confidence 1334444443322221 000001234567788887753 346778888888888899999997 9999999864 34677
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHCCC---------CCC------------HhhHHHHHHHHHhcCChHHHHHHHHH
Q 047873 312 AFTALISGFCRGGKVVEAERMLREMLKVGL---------KPD------------DATYTMVIDCFCKNGDTKTGFRLLKE 370 (464)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~ 370 (464)
.|...+....+.|++++|..+|+++..... .|+ ..+|...+....+.|+.+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788888889999999999999999886310 131 23677778888888999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc--
Q 047873 371 MRSDGHLPAVETYNALMNGLCKH-GQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD-- 446 (464)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~-- 446 (464)
+++.........|...+..-.+. ++.+.|..+|+..++. .+-+...|..++......|+.+.|+.++++ ....|+
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 99861112334444443333444 4599999999999975 444677777888888889999999999998 444452
Q ss_pred --hhHHHHhhccchhhhh
Q 047873 447 --YACYTSLVSKSSKYRQ 462 (464)
Q Consensus 447 --~~~~~~ll~~~~~~~~ 462 (464)
...|...+..-.++|+
T Consensus 539 ~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 4556666655555543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-13 Score=108.70 Aligned_cols=167 Identities=11% Similarity=-0.020 Sum_probs=150.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
+..+|..+...|.+.|++++|++.|++..+.+ |-+..++..+..++.+.|++++|...+..+....+. +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45789999999999999999999999999886 557888999999999999999999999999987765 7888888999
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 217 (464)
.+...++++.|...+.+..... +.+...+..+...+.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988764 4467788999999999999999999999998764 4467889999999999999999
Q ss_pred HHHHHHHHHHC
Q 047873 218 AELLLHEMCER 228 (464)
Q Consensus 218 a~~~~~~~~~~ 228 (464)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999999886
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-13 Score=117.48 Aligned_cols=238 Identities=11% Similarity=0.039 Sum_probs=186.4
Q ss_pred CCCHHHHHHHHHHHHhC----CCh----HHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHh---
Q 047873 4 RLTLHAYSTMVHFLVAH----KMH----SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVD--- 71 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--- 71 (464)
+.+...|...+..-..+ ++. ++|+..|++++. ..|+. .+|..++..+..
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~-------------------~~p~~~~~w~~~~~~~~~~~~ 65 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL-------------------VLGHHPDIWYEAAQYLEQSSK 65 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHH-------------------HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHH-------------------HcCCCHHHHHHHHHHHHHhch
Confidence 34567788888765544 233 678888888883 23444 889888888763
Q ss_pred ----cCCh-------hHHHHHHHHHHh-CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChh-hHHHHHHH
Q 047873 72 ----LGFL-------DDAIQCFRLLRK-HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY-VFNVLMHK 138 (464)
Q Consensus 72 ----~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 138 (464)
.|++ ++|+.+|++... .. |-+...|..++..+...|++++|..+|+++++..+. +.. +|..++..
T Consensus 66 ~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 143 (308)
T 2ond_A 66 LLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKF 143 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHH
T ss_pred hhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHH
Confidence 5886 999999999998 44 446678999999999999999999999999986543 444 89999999
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH-hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC-KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 217 (464)
+.+.|++++|..+|++..+.+ +.+...|........ ..|++++|..+|+...+.. +.+...|..++..+.+.|++++
T Consensus 144 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~ 221 (308)
T 2ond_A 144 ARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNN 221 (308)
T ss_dssp HHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998864 334444543333322 3799999999999988753 3467888999999999999999
Q ss_pred HHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC
Q 047873 218 AELLLHEMCERG-LTP--NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG 270 (464)
Q Consensus 218 a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 270 (464)
|..+|++..+.. ++| ....|..++....+.|+. +.|..+++++.+..
T Consensus 222 A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~------~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 222 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL------ASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHc
Confidence 999999999863 344 466788888888887766 69999999998753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-14 Score=125.83 Aligned_cols=206 Identities=14% Similarity=0.007 Sum_probs=140.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP--GLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
+...+...+..+...|++++|+..|++++.... ..+. ..++..+...|...|++++|++.++
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 67 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT----------------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc----------------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456777888999999999999999999985311 1111 2577888999999999999999998
Q ss_pred HHHhC----C-CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCC---------
Q 047873 84 LLRKH----Y-FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PS----VYVFNVLMHKLCKEGK--------- 144 (464)
Q Consensus 84 ~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------- 144 (464)
+.... + .+....++..+...+...|++++|...+++.++.... ++ ..++..+...+...|+
T Consensus 68 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (338)
T 3ro2_A 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC-
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhh
Confidence 86543 1 1122456778888888999999999999887653211 12 3367778888888888
Q ss_pred -----------hhhHHHHHHHHhhC----C-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC----C-CCCHHHHH
Q 047873 145 -----------IKDAQMVFDEFGKR----G-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG----M-RPDVYTYS 203 (464)
Q Consensus 145 -----------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~ 203 (464)
+++|.+.+++.... + ......++..+...+...|++++|...+++..+.. . .....++.
T Consensus 148 ~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (338)
T 3ro2_A 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 227 (338)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 78887777765432 1 01113356666777777777777777777665321 0 01123566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 047873 204 ALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 204 ~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
.+...+...|++++|...+++..+
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 667777777777777777776654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-13 Score=115.21 Aligned_cols=204 Identities=8% Similarity=-0.088 Sum_probs=169.5
Q ss_pred CCCHHHHHHHHHHHH-------hCCCh-------HHHHHHHHHHHHhcCCCChHHHHHHHHHhcC-CCCCh-hhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLV-------AHKMH-------SQARDLLHLIVSKKGMGSSASLFASILETRG-THLPG-LVLDALMI 67 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~ 67 (464)
|.++..|..++..+. ..|++ ++|+..|++++ . ..|+. .+|..++.
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl-------------------~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-------------------STLLKKNMLLYFAYAD 107 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH-------------------TTTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH-------------------HHhCcccHHHHHHHHH
Confidence 678889999988876 35886 89999999998 5 56766 79999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChh-cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCh
Q 047873 68 VYVDLGFLDDAIQCFRLLRKHYFRIPAR-GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC-KEGKI 145 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 145 (464)
.+.+.|++++|+++|+++.+.. +.+.. +|..++..+.+.|++++|..+|+++++..+. +...|...+.... ..|++
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCH
T ss_pred HHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999864 22344 8999999999999999999999999987653 5556654444432 37999
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHH
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSG-MRP--DVYTYSALINGLCKENRLDDAELLL 222 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 222 (464)
++|.++|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988763 3467888999999999999999999999999863 344 4667888999999999999999999
Q ss_pred HHHHHCC
Q 047873 223 HEMCERG 229 (464)
Q Consensus 223 ~~~~~~~ 229 (464)
+++.+..
T Consensus 265 ~~a~~~~ 271 (308)
T 2ond_A 265 KRRFTAF 271 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9998763
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=126.28 Aligned_cols=96 Identities=11% Similarity=-0.071 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhcHHHHHHHHHcCCChhhHHHHHHHHHhcC----CC-CChh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP----ARGCRCLIDRMMRTNLPTVTLGFYLEILDYG----YS-PSVY 130 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~ 130 (464)
..+......+...|++++|+..|+++...+ +.+ ..++..+...+...|++++|...+++++... .. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 555666666667777777777777666653 222 2345555566666666666666666554321 00 0123
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHh
Q 047873 131 VFNVLMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
++..+...+...|++++|...+++..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-13 Score=124.11 Aligned_cols=280 Identities=14% Similarity=0.089 Sum_probs=163.0
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHH
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV----YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLIN 172 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 172 (464)
+..+...+...|++++|+..|+++++..+. +. .++..+...+...|++++|...+++..+..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 116 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------- 116 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------
Confidence 344455555666666666666666655332 22 345555555556666666666655543320
Q ss_pred HHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHh
Q 047873 173 GHCKAKNLDEGFRLKSVMEGSG-MRPDVYTYSALINGLCKENRLDDAELLLHEMCER----G-LTPNDVIFTTLIDGHCK 246 (464)
Q Consensus 173 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~ 246 (464)
...+ ......++..+...|...|++++|...+++..+. + .......+..+...|..
T Consensus 117 ------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 117 ------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp ------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 0000 0111233444444455555555555555444332 0 00112234444444544
Q ss_pred cCC----------ccc-ccCHHHHHHHHHHHHhC----CC-CCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC
Q 047873 247 NGR----------IDM-AGDMKEARKIVDEMCTN----GL-NPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE-LD 309 (464)
Q Consensus 247 ~~~----------~~~-~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 309 (464)
.|+ ++. ...+++|...+++.... +. .....++..+...+...|++++|...+++..+.... .+
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 444 000 00013555555544321 11 112346778888899999999999999888764211 01
Q ss_pred ----HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCC-----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC
Q 047873 310 ----NVAFTALISGFCRGGKVVEAERMLREMLKVGLK-----PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GH 376 (464)
Q Consensus 310 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~ 376 (464)
..++..+...+...|++++|...++++...... ....++..+...+...|++++|...+++..+. +.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 237788888899999999999999887753210 11456778888899999999999999887764 10
Q ss_pred -CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 377 -LPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 377 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.....++..+...|...|++++|...+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11244677888889999999999999988875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=133.29 Aligned_cols=168 Identities=10% Similarity=-0.021 Sum_probs=151.8
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
-|.++.+|+.|+.+|.+.|++++|++.|++++ ...|+. .++..+..+|.+.|++++|++.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl-------------------~l~P~~~~a~~nLg~~l~~~g~~~eA~~~ 65 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKAL-------------------EVFPEFAAAHSNLASVLQQQGKLQEALMH 65 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46778999999999999999999999999999 456666 9999999999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLH 161 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (464)
|++..+.+ +-+..++..+..++...|++++|++.|+++++..+. +..++..+..++...|++++|++.|++..+.. +
T Consensus 66 ~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P 142 (723)
T 4gyw_A 66 YKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-P 142 (723)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-S
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 99999886 456889999999999999999999999999998765 78999999999999999999999999998874 3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047873 162 ATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192 (464)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 192 (464)
-+...+..+..++...|++++|.+.++++.+
T Consensus 143 ~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 4678899999999999999999999888753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-14 Score=129.47 Aligned_cols=192 Identities=13% Similarity=-0.077 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMH-SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
+...|..++.+|...|++ ++|++.|++++. ..|+. .+|..+...|.+.|++++|++.|+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~-------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVK-------------------LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHh-------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555555555555 555555555542 22232 455555555555555555555555
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcC---------CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CChh
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRT---------NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE--------GKIK 146 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 146 (464)
+..+.. |+...+..+...+... |++++|+..++++++..+. +...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 554443 2234444455555555 5555555555555544432 444455555555544 5555
Q ss_pred hHHHHHHHHhhCCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047873 147 DAQMVFDEFGKRGLH---ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 221 (464)
+|.+.|++..+.. + .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|++.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544431 1 234445555555555555555555555544432 12333444444444445544444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=120.23 Aligned_cols=181 Identities=13% Similarity=0.008 Sum_probs=142.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHH
Q 047873 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 79 (464)
|+.|.+..+|..++..+...|++++|+..|++++.. ...... ...|.. .++..+...|...|++++|+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---------~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~ 89 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALED---------LEKTSG--HDHPDVATMLNILALVYRDQNKYKDAA 89 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHHHHC--SSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHHcC--CCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 456778899999999999999999999999999831 111110 022333 78889999999999999999
Q ss_pred HHHHHHHhC------C-CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhcCCh
Q 047873 80 QCFRLLRKH------Y-FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY------GY-SPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 80 ~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~ 145 (464)
..|++.... + .+....++..+...+...|++++|...++++++. +. .....++..+...+...|++
T Consensus 90 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 169 (311)
T 3nf1_A 90 NLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169 (311)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 999998764 1 1234567888999999999999999999998864 21 22456678889999999999
Q ss_pred hhHHHHHHHHhhC------C-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047873 146 KDAQMVFDEFGKR------G-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192 (464)
Q Consensus 146 ~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 192 (464)
++|.+.+++.... + .+....++..+...+...|++++|...++++.+
T Consensus 170 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999988664 1 122345678889999999999999999998874
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-12 Score=117.90 Aligned_cols=227 Identities=6% Similarity=-0.080 Sum_probs=160.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC--C----CC
Q 047873 205 LINGLCKENRLDDAELLLHEMCER----GLTP-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG--L----NP 273 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~----~~ 273 (464)
....+...|++++|...|++..+. +-.+ ....+..+...|...|++ +.|...+++..... . +.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~------~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQT------YFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHhCccchHH
Confidence 455566677777777777776553 1111 234566666666666655 46776666665421 0 11
Q ss_pred CHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHhccCChHHHHHHHHHHHHC----CC-CC
Q 047873 274 DKITYTILLDGFCKEGDLESALDIRKEMIKRGIE-L----DNVAFTALISGFCRGGKVVEAERMLREMLKV----GL-KP 343 (464)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~ 343 (464)
...++..+..+|...|++++|...+++.++.... . ...++..+...|...|++++|...+++..+. +. +.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 2346788889999999999999999988754211 1 1247888999999999999999999998872 22 33
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CH
Q 047873 344 DDATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GHLPAVETYNALMNGLCKHGQ---LKNANMLLDTMLDLGVVP-DD 415 (464)
Q Consensus 344 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~ 415 (464)
...++..+...+.+.|++++|...+++..+. +.+.....+..+...+...|+ +++|..++++. +..| ..
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~ 339 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLE 339 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHH
Confidence 4567889999999999999999999988764 111123345678888888999 77777777665 2333 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 416 ITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
..+..+...|...|++++|.+.+++
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5677888999999999999999886
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-12 Score=117.84 Aligned_cols=192 Identities=8% Similarity=-0.116 Sum_probs=110.5
Q ss_pred hCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh--hhHHHHHH--HHHhcCChhHHH-----------HHHH
Q 047873 19 AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG--LVLDALMI--VYVDLGFLDDAI-----------QCFR 83 (464)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~--~~~~~g~~~~A~-----------~~~~ 83 (464)
.++++++|..+++.+.+..+ .+..+. ..+..++. .....++++.+. +.++
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~---------------~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 24 RRFSIPDAEYLRREIKQELD---------------QMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHH---------------TSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHH---------------hhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 59999999999999864321 232233 22222222 112223344444 5666
Q ss_pred HHHhCCCCCChhc------HHHHHHHHHcCCChhhHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCChhhHHHHH
Q 047873 84 LLRKHYFRIPARG------CRCLIDRMMRTNLPTVTLGFYLEILDY----GYSP-SVYVFNVLMHKLCKEGKIKDAQMVF 152 (464)
Q Consensus 84 ~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 152 (464)
.+.... .+... +...+..+...|++++|...++++++. +..+ ...++..+..++...|+++.|...+
T Consensus 89 ~i~~~~--~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~ 166 (383)
T 3ulq_A 89 EIDKKQ--ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166 (383)
T ss_dssp HHHHHT--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcC--CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 654432 11111 222556677788888888888887763 1111 2356677777888888888888877
Q ss_pred HHHhhCC--C----CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHH
Q 047873 153 DEFGKRG--L----HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS----GMR-PDVYTYSALINGLCKENRLDDAELL 221 (464)
Q Consensus 153 ~~~~~~~--~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 221 (464)
++..+.. . +....+++.+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|++.
T Consensus 167 ~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 167 RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp HHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7765431 0 001235566666777777777777777665532 100 0123556666677777777777777
Q ss_pred HHHHHH
Q 047873 222 LHEMCE 227 (464)
Q Consensus 222 ~~~~~~ 227 (464)
+++..+
T Consensus 247 ~~~al~ 252 (383)
T 3ulq_A 247 FKRAIA 252 (383)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-13 Score=119.94 Aligned_cols=276 Identities=11% Similarity=0.002 Sum_probs=171.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhcHHHHHHHHHcCCChhhHHHHHHHHHhc----CCC-CChhh
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP----ARGCRCLIDRMMRTNLPTVTLGFYLEILDY----GYS-PSVYV 131 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 131 (464)
.+......+...|++++|+..|+++.... +.+ ...+..+...+...|++++|...++++++. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44556778889999999999999998874 223 356778888999999999999999887643 111 12556
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCC----cccHHHHHHHHHhcCC--------------------hhHHHHH
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKRGL-HAT----AVSFNTLINGHCKAKN--------------------LDEGFRL 186 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 186 (464)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77888889999999999999888754310 011 2367778888888888 8888888
Q ss_pred HHHHhhC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCcccccCHHHHH
Q 047873 187 KSVMEGS----GM-RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT-PNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260 (464)
Q Consensus 187 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~ 260 (464)
++..... +. .....++..+...+...|++++|...+++..+.... ++.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------------- 219 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-------------------------- 219 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh--------------------------
Confidence 8776432 11 112345677778888888888888888877643100 000
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHhccCChHHHHHHHHH
Q 047873 261 KIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIE-----LDNVAFTALISGFCRGGKVVEAERMLRE 335 (464)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (464)
.....++..+...+...|++++|...+++..+.... ....++..+...+...|++++|...+++
T Consensus 220 -----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 220 -----------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 001223344444444555555555555444332100 0133455555566666666666666665
Q ss_pred HHHCC----C-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 336 MLKVG----L-KPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 336 ~~~~~----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
+.... . .....++..+...|...|++++|...+++..+.
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 54321 0 011234556666666667777777776666653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=120.20 Aligned_cols=169 Identities=18% Similarity=0.046 Sum_probs=137.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc------CC-
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKH-------YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY------GY- 125 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~- 125 (464)
.++..+...+...|++++|+.+|+++... ..+....++..+...+...|++++|...++++++. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88899999999999999999999998773 22344667888999999999999999999998864 21
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC------CC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC-----
Q 047873 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR------GL-HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS----- 193 (464)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 193 (464)
.....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|...++.+.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 224667888999999999999999999988654 11 223456788899999999999999999988754
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 194 -GMRP-DVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 194 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
+..| ...++..+..++...|++++|.+.++++.+.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1122 3456888999999999999999999998763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.9e-13 Score=123.13 Aligned_cols=199 Identities=10% Similarity=-0.157 Sum_probs=169.0
Q ss_pred CCCCCh-hhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFL-DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV 131 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (464)
...|+. ..+..+...|...|++ ++|++.|++..+.. +.+..++..+...+...|++++|...|+++++.. |+...
T Consensus 96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 172 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVS 172 (474)
T ss_dssp TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHH
T ss_pred ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHH
Confidence 444544 8999999999999999 99999999999886 4568899999999999999999999999999876 55788
Q ss_pred HHHHHHHHHhc---------CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhc--------CChhHHHHHHHHHhhCC
Q 047873 132 FNVLMHKLCKE---------GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA--------KNLDEGFRLKSVMEGSG 194 (464)
Q Consensus 132 ~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~ 194 (464)
+..+..++... |++++|.+.|++..+.. +.+...|..+..+|... |++++|...|++..+..
T Consensus 173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 251 (474)
T 4abn_A 173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251 (474)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC
Confidence 99999999999 99999999999998874 44678899999999998 99999999999998763
Q ss_pred CC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHH
Q 047873 195 MR---PDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVD 264 (464)
Q Consensus 195 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~ 264 (464)
+ .+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...|++ ++|+..+.
T Consensus 252 -p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~------~eAi~~~~ 316 (474)
T 4abn_A 252 -RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRL------TSLLESKG 316 (474)
T ss_dssp -GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH------HHHHHHTT
T ss_pred -CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH------HHHHHHhc
Confidence 2 47888999999999999999999999999887432 566777777777776655 46665443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=125.67 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=151.2
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
+..|+. .+++.+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|+..|+++++..+. +..+|
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~ 80 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAY 80 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 456776 999999999999999999999999999886 456789999999999999999999999999998765 78999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (464)
..+..++...|++++|.+.|++..+.+ +-+...|+.+..+|...|++++|++.|++..+.. +-+...+..+..++...
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhc
Confidence 999999999999999999999998874 4467889999999999999999999999998764 33678899999999999
Q ss_pred CChhHHHHHHHHHHH
Q 047873 213 NRLDDAELLLHEMCE 227 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~ 227 (464)
|++++|.+.++++.+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999988765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-12 Score=103.63 Aligned_cols=164 Identities=12% Similarity=-0.054 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+..++..+...|++++|+..|+++.... +.+...+..++..+...|++++|...++++.+..+. +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 34444445555555555555555544432 223444455555555555555555555555544322 4455555555555
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 220 (464)
..|++++|.+.++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5556666655555555442 2344455555555666666666666666555442 2345556666666666666666666
Q ss_pred HHHHHHHC
Q 047873 221 LLHEMCER 228 (464)
Q Consensus 221 ~~~~~~~~ 228 (464)
.++.+.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66665543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.6e-12 Score=100.38 Aligned_cols=153 Identities=11% Similarity=-0.047 Sum_probs=111.8
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (464)
..+..++..+...|++++|...++++.+..+. +..++..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566677777788888888888877765443 66777777778888888888888888776653 34566777777778
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047873 175 CKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251 (464)
Q Consensus 175 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (464)
...|++++|.+.++.+.... +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 88888888888888776653 3456677777778888888888888888877664 235667777777777777765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=103.16 Aligned_cols=197 Identities=8% Similarity=-0.067 Sum_probs=154.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
+.++..|..++..+...|++++|++.|++++.. ..+++..++..+...+...|++++|++.|+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 66 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL-----------------TNNQDSVTAYNCGVCADNIKKYKEAADYFD 66 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----------------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 456789999999999999999999999999853 111455777779999999999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCChhhHHHHHHHHh
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV-------YVFNVLMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
+..... |.+..++..+..++...|++++|+..++++++..+. +. ..|..+...+...|++++|.+.|++..
T Consensus 67 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 67 IAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 999886 446778999999999999999999999999987654 55 557888889999999999999999998
Q ss_pred hCCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 157 KRGLHAT---AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 157 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
+. .|+ ...+..+..+|...| ...++.+...+ ..+...|.... ....+.+++|+..|++..+..
T Consensus 145 ~~--~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 145 DV--TSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp TS--SCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hc--CCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 76 343 456777777775544 34455555543 22344444333 334567899999999998874
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-11 Score=99.72 Aligned_cols=153 Identities=7% Similarity=-0.149 Sum_probs=129.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
+...+...+..+...|++++|++.|++......+++...+..+..++...|++++|+..+++.++..+. +..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 447888899999999999999999999998874367778888999999999999999999999987765 7888999999
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCCc-------ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHHHHHHHH
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRGLHATA-------VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD---VYTYSALIN 207 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 207 (464)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999998763 2344 45778888899999999999999999876 444 567777888
Q ss_pred HHHhcCC
Q 047873 208 GLCKENR 214 (464)
Q Consensus 208 ~~~~~~~ 214 (464)
+|...|+
T Consensus 162 ~~~~~~~ 168 (228)
T 4i17_A 162 LFYNNGA 168 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.7e-11 Score=106.75 Aligned_cols=227 Identities=8% Similarity=-0.029 Sum_probs=163.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC---C--CC
Q 047873 204 ALINGLCKENRLDDAELLLHEMCERGL-TP----NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG---L--NP 273 (464)
Q Consensus 204 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~--~~ 273 (464)
.....+...|++++|+..|++..+... .+ ....+..+...|...|++ +.|...+++..... . .+
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~------~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT------HVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHHhCCCchh
Confidence 345556677888888888887765410 11 234566677777777765 47777777765421 0 11
Q ss_pred -CHHhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHH-----CCCC
Q 047873 274 -DKITYTILLDGFCKEGDLESALDIRKEMIKR----GIE-LDNVAFTALISGFCRGGKVVEAERMLREMLK-----VGLK 342 (464)
Q Consensus 274 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~ 342 (464)
...++..+..+|...|++++|...+++.++. +.. ....++..+...|...|++++|...+++... .. +
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~ 258 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-D 258 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-G
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-h
Confidence 2456788899999999999999999988763 111 1235678888999999999999999999887 43 3
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-C
Q 047873 343 PDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDG----HLPAVETYNALMNGLCKHGQ---LKNANMLLDTMLDLGVVP-D 414 (464)
Q Consensus 343 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~ 414 (464)
....++..+...+.+.|++++|...+++..+.. .+.....+..+...+...|+ +.+|+..+++. +..| .
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~ 335 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYI 335 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHH
Confidence 336778889999999999999999999988751 12223456666677777888 77777777663 2223 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 415 DITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
...+..+...|...|++++|.+.+++
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45667788999999999999999876
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-10 Score=105.06 Aligned_cols=241 Identities=10% Similarity=-0.080 Sum_probs=131.8
Q ss_pred CCChhhHHHHHHHH--HhcCChhHHHHHHHHHHhCC--CCCChh--cHHHHHHH--HHcCCChhhHH---------HHHH
Q 047873 56 HLPGLVLDALMIVY--VDLGFLDDAIQCFRLLRKHY--FRIPAR--GCRCLIDR--MMRTNLPTVTL---------GFYL 118 (464)
Q Consensus 56 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~~~l~~~--~~~~~~~~~a~---------~~~~ 118 (464)
-|...+-..|-..| .+.+++++|.++++++.... ...+.. .|..++.. ..-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34445555666666 78999999999999886542 112222 22333321 11112222222 5555
Q ss_pred HHHhcCCCCCh----hhHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CC----CcccHHHHHHHHHhcCChhHHHHHHHH
Q 047873 119 EILDYGYSPSV----YVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL-HA----TAVSFNTLINGHCKAKNLDEGFRLKSV 189 (464)
Q Consensus 119 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 189 (464)
.+.......+. ..+......+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432111111 1223345566788999999999988765411 11 234677788888889999999888887
Q ss_pred HhhC----CC-C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCcccccCHHH
Q 047873 190 MEGS----GM-R-PDVYTYSALINGLCKENRLDDAELLLHEMCER----GLT-PNDVIFTTLIDGHCKNGRIDMAGDMKE 258 (464)
Q Consensus 190 ~~~~----~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (464)
..+. +. . ....+++.+..+|...|++++|.+.|++..+. +.. ....++..+...|...|++ ++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~------~~ 240 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD------QM 240 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------HH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH------HH
Confidence 6642 11 1 12456778888888999999999888887653 100 0122344444445544443 35
Q ss_pred HHHHHHHHHh-----CCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 259 ARKIVDEMCT-----NGLNPDKITYTILLDGFCKEGDLESALDIRKEMIK 303 (464)
Q Consensus 259 a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (464)
|...+++... ..+ ....++..+..++.+.|++++|...+++..+
T Consensus 241 A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555443 211 1133344444444444555555544444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-10 Score=103.49 Aligned_cols=272 Identities=13% Similarity=0.010 Sum_probs=173.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CC----hhh
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA----RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PS----VYV 131 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 131 (464)
+.......+...|++++|+..+++........+. .++..+...+...|++++|...+++....... .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3445566778899999999999998876422222 14566677888899999999999988763211 12 233
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhC----CCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC----CCHH
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKR----GLH--A-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR----PDVY 200 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 200 (464)
+..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566788899999999999999887653 211 1 2345666788899999999999999987653211 1235
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCC
Q 047873 201 TYSALINGLCKENRLDDAELLLHEMCERGLTPN-DVIFT-----TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPD 274 (464)
Q Consensus 201 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 274 (464)
++..+...+...|++++|...+++.......++ ...+. .....+...|++ ++|...+++.......+.
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK------AAAANWLRHTAKPEFANN 249 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHSCCCCCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH------HHHHHHHHhCCCCCCCcc
Confidence 677888899999999999999998875411111 11121 122335565554 578888777655332111
Q ss_pred ---HHhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 275 ---KITYTILLDGFCKEGDLESALDIRKEMIKR----GIELDN-VAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 275 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
...+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123455566666677777777666665432 111111 1344444555555666666655555543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-10 Score=102.98 Aligned_cols=267 Identities=13% Similarity=0.046 Sum_probs=176.2
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HHHHHHHH
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKRGLHATA----VSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-RPD----VYTYSALI 206 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~ 206 (464)
...+...|++++|...+++........+. .+++.+...+...|++++|...+++...... ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33455566666666666665543211111 1344555566667777777777766543210 111 23356677
Q ss_pred HHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC--C--CH
Q 047873 207 NGLCKENRLDDAELLLHEMCER----GLT--P-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN--P--DK 275 (464)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~ 275 (464)
..+...|++++|...+++..+. +.. | ....+..+...+...|++ ++|...+++....... + ..
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL------DEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHhhccCcHHHH
Confidence 8888999999999999887653 211 2 234556677788887776 6999999988764321 1 23
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHhccCChHHHHHHHHHHHHCCCCCC---Hh
Q 047873 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIELD--NVAFT----ALISGFCRGGKVVEAERMLREMLKVGLKPD---DA 346 (464)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~ 346 (464)
.++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4677788889999999999999998876422211 11111 233447789999999999998876432111 22
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSD----GHLPAV-ETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 347 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.+..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567788899999999999999987653 222222 3667778889999999999999988764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-12 Score=109.57 Aligned_cols=165 Identities=13% Similarity=-0.018 Sum_probs=128.0
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC------C
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH------Y 89 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 89 (464)
....|++++|+..|++++. ++..+.. ...|+. .++..+...|...|++++|+..|+++... +
T Consensus 11 ~~~~~~~~~A~~~~~~al~---------~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALE---------DLEKTSG--HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79 (283)
T ss_dssp --CCSCSSSHHHHHHHHHH---------HHHHHHC--SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred cCCCCCHHHHHHHHHHHHH---------HHHHhcC--CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC
Confidence 3457999999999999883 3333332 122333 88999999999999999999999998754 1
Q ss_pred -CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-----C--CCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC---
Q 047873 90 -FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-----Y--SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR--- 158 (464)
Q Consensus 90 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 158 (464)
.+....++..+...+...|++++|...++++++.. . +....++..+...+...|++++|...+++..+.
T Consensus 80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12335678889999999999999999999988651 1 224667888999999999999999999988764
Q ss_pred ---C-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047873 159 ---G-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG 192 (464)
Q Consensus 159 ---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 192 (464)
+ .+....++..+...+...|++++|...+++..+
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122356788899999999999999999988764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-11 Score=98.47 Aligned_cols=165 Identities=8% Similarity=-0.012 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHH----------------HHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDA----------------LMIV 68 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------------l~~~ 68 (464)
++..+-..+..+...|++++|+..|++++. ..|+. .++.. +...
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA-------------------LNIDRTEMYYWTNVDKNSEISSKLATELALA 63 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------hCCCChHHHHHhhhcchhhhhHHHHHHHHHH
Confidence 566777788889999999999999999984 34444 44444 6666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--hh
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK--IK 146 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 146 (464)
|.+.|++++|+..|++..+.+ |-+..++..+..++...|++++|+..|+++++..+. +..++..+..++...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 666666666666666666654 334556666666666666666666666666665543 55556555555544432 22
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
.+...+...... .|....+.....++...|++++|...|++..+.
T Consensus 142 ~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 142 KLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 333333333211 111112222333444455555555555555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-10 Score=101.00 Aligned_cols=205 Identities=10% Similarity=-0.002 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
..|...+.+|...|++++|++.|++++.- ....+.+++. .+++.+..+|...|++++|+..|++..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~-------------~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADY-------------QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------HHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 36777788899999999999999988731 1111222232 788999999999999999999999886
Q ss_pred hCCCC---C--ChhcHHHHHHHHHcC-CChhhHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhcCChhhHHHHHHHH
Q 047873 87 KHYFR---I--PARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGYSP-S----VYVFNVLMHKLCKEGKIKDAQMVFDEF 155 (464)
Q Consensus 87 ~~~~~---~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (464)
..... + ...++..+...+... |++++|+..|++.++..+.. + ..++..+...+...|++++|...|++.
T Consensus 105 ~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 54211 1 135678888999996 99999999999988743221 1 356788899999999999999999999
Q ss_pred hhCCCCCCcc------cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH------HHHHHHHHHHH--hcCChhHHHHH
Q 047873 156 GKRGLHATAV------SFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV------YTYSALINGLC--KENRLDDAELL 221 (464)
Q Consensus 156 ~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~~~~~a~~~ 221 (464)
.......... .+..+..++...|++++|...|++..+. .|+. ..+..++..+. ..+++++|++.
T Consensus 185 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~ 262 (292)
T 1qqe_A 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKE 262 (292)
T ss_dssp HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8764222211 4667788889999999999999998764 2331 12344555554 35667888888
Q ss_pred HHHHHH
Q 047873 222 LHEMCE 227 (464)
Q Consensus 222 ~~~~~~ 227 (464)
|+.+..
T Consensus 263 ~~~~~~ 268 (292)
T 1qqe_A 263 FDNFMR 268 (292)
T ss_dssp HTTSSC
T ss_pred hccCCc
Confidence 876654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=106.26 Aligned_cols=233 Identities=15% Similarity=0.020 Sum_probs=153.8
Q ss_pred HhcCChhHHHHHHHHHHhC-------CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc------CC-CCChhhHHHH
Q 047873 70 VDLGFLDDAIQCFRLLRKH-------YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY------GY-SPSVYVFNVL 135 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 135 (464)
...|++++|+..|++..+. +.+....++..+...+...|++++|...++++++. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776542 22334677889999999999999999999998864 21 2245678889
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC------C-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC------CCCC-CHHH
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKR------G-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS------GMRP-DVYT 201 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 201 (464)
..++...|++++|.+.+++.... . .+....++..+...+...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988654 1 1223567888999999999999999999988754 1122 3567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC
Q 047873 202 YSALINGLCKENRLDDAELLLHEMCER-------GLTP-NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP 273 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (464)
+..+..++...|++++|...++++.+. ...+ ....+..+...+...+.......+..+...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999998764 1112 2233333444444434333223333333333322111 111
Q ss_pred CHHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 274 DKITYTILLDGFCKEGDLESALDIRKEMIK 303 (464)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (464)
...++..+..+|...|++++|...+++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234566677777777777777777776654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=8.2e-12 Score=96.17 Aligned_cols=146 Identities=7% Similarity=-0.092 Sum_probs=103.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047873 12 TMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYF 90 (464)
Q Consensus 12 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 90 (464)
.|+..+...|++++|++.+++++ ...|+. ..+..+...|.+.|++++|++.|++..+..
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~-------------------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~- 61 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGST-------------------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ- 61 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHS-------------------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HhHHHHHHcChHHHHHHHHHHhc-------------------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 35566677788888888888876 445555 677778888888888888888888888775
Q ss_pred CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH-HHHHhhCCCCCCcccHHH
Q 047873 91 RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV-FDEFGKRGLHATAVSFNT 169 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ 169 (464)
|-+..+|..+..++...|++++|+..|+++++..+. ++.++..+..++.+.|++++|.+. +++..+.. +.++.+|..
T Consensus 62 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l 139 (150)
T 4ga2_A 62 ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKL 139 (150)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 446778888888888888888888888888887655 677788888888888888766554 46666553 335556666
Q ss_pred HHHHHHhcCC
Q 047873 170 LINGHCKAKN 179 (464)
Q Consensus 170 l~~~~~~~~~ 179 (464)
....+...|+
T Consensus 140 ~~~ll~~~G~ 149 (150)
T 4ga2_A 140 KEQLLDCEGE 149 (150)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHHhCc
Confidence 6666655553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-11 Score=100.96 Aligned_cols=187 Identities=6% Similarity=-0.141 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP----GLVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 79 (464)
+.++..+..++..+...|++++|++.|++++.. .|+ ..++..++.+|.+.|++++|+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------------------~p~~~~~~~a~~~lg~~~~~~~~~~~A~ 72 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-------------------GRTHEWAADAQFYLARAYYQNKEYLLAA 72 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-------------------CSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------------------CCCCcchHHHHHHHHHHHHHhCcHHHHH
Confidence 456677777788888888888888888888742 222 366777778888888888888
Q ss_pred HHHHHHHhCCCC--CChhcHHHHHHHHHc--------CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 80 QCFRLLRKHYFR--IPARGCRCLIDRMMR--------TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 80 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
..|+++....+. ....++..+..++.. .|++++|+..|+++++..+. +......+.......
T Consensus 73 ~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~------- 144 (261)
T 3qky_A 73 SEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELR------- 144 (261)
T ss_dssp HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHH-------
Confidence 888887776321 123456666777777 78888888888887776543 333332211000000
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhc----------CChhH
Q 047873 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP--DVYTYSALINGLCKE----------NRLDD 217 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~ 217 (464)
... ...+..+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++
T Consensus 145 ---~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (261)
T 3qky_A 145 ---AKL--------ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRR 213 (261)
T ss_dssp ---HHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHH
Confidence 000 0112344555556666666666666655431110 123444555555544 55666
Q ss_pred HHHHHHHHHHC
Q 047873 218 AELLLHEMCER 228 (464)
Q Consensus 218 a~~~~~~~~~~ 228 (464)
|...|+++.+.
T Consensus 214 A~~~~~~~~~~ 224 (261)
T 3qky_A 214 AVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=7e-11 Score=114.70 Aligned_cols=180 Identities=10% Similarity=-0.052 Sum_probs=146.6
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 96 (464)
...|++++|++.|++++.. .+ . ......|+. .++..+...|.+.|++++|++.|+++.+.+ +.+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~-~~-------~---~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a 469 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHG-AL-------D---ADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRL 469 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC------------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHH
T ss_pred ccccCHHHHHHHHHHhhhh-cc-------c---ccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHH
Confidence 6799999999999998710 00 0 000233444 899999999999999999999999999875 557788
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (464)
+..+..++...|++++|+..|+++++..+. +...+..+..++...|++++ .+.|++..+.+ +.+...|..+..++.+
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~ 546 (681)
T 2pzi_A 470 VWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSA 546 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHH
Confidence 999999999999999999999999998765 78889999999999999999 99999998874 4467789999999999
Q ss_pred cCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC
Q 047873 177 AKNLDEGFRLKSVMEGSGMRPD-VYTYSALINGLCKENR 214 (464)
Q Consensus 177 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 214 (464)
.|++++|.+.|++..+. .|+ ...+..+..++...++
T Consensus 547 ~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 547 EGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred cCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99999999999998876 344 5667777777766554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-10 Score=86.81 Aligned_cols=131 Identities=13% Similarity=0.078 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
.+|..++..+...|++++|++.|++++.. .+.+..++..++..+...|++++|+..|+++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 63 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc------------------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46777888888888888888888887732 122336777778888888888888888888776
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+ +.+...+..++..+...|++++|...++++.+..+. +...+..+...+...|++++|...++++...
T Consensus 64 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 64 LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 64 345566777777777888888888888877776543 5666777777777777777777777776654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-10 Score=100.32 Aligned_cols=163 Identities=9% Similarity=-0.088 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChh-hHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY-VFNVLMHK 138 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 138 (464)
..+..+...+.+.|++++|+..|++..... |-+..++..+...+...|++++|...++++....+ +.. ........
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHHHH
Confidence 445555555566666666666666655554 33445555556666666666666666665554432 222 12222223
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCChhH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMR-PDVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 217 (464)
+...++.+.|...+++..... +.+...+..+...+...|++++|...|+++.+.... .+...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 445555555666665555542 334455555666666666666666666665544211 114455566666666666666
Q ss_pred HHHHHHHHH
Q 047873 218 AELLLHEMC 226 (464)
Q Consensus 218 a~~~~~~~~ 226 (464)
|...|++..
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8.6e-10 Score=91.43 Aligned_cols=187 Identities=10% Similarity=-0.081 Sum_probs=126.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.+...+..++..+...|++++|+..|++++.... ..|. ..++..++.+|.+.|++++|+..|+
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p----------------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~ 65 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYP----------------FGPYSQQVQLDLIYAYYKNADLPLAQAAID 65 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3567788889999999999999999999985311 1122 2678889999999999999999999
Q ss_pred HHHhCCCCCCh---hcHHHHHHHHHc------------------CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 84 LLRKHYFRIPA---RGCRCLIDRMMR------------------TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 84 ~~~~~~~~~~~---~~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
++.+..+. +. .++..+..++.. .|++++|+..|+++++..+. +..++.......
T Consensus 66 ~~l~~~P~-~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~--- 140 (225)
T 2yhc_A 66 RFIRLNPT-HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV--- 140 (225)
T ss_dssp HHHHHCTT-CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH---
T ss_pred HHHHHCcC-CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH---
Confidence 99887522 22 245555555543 45667777777777665433 333322211100
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChhHH
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD----VYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 218 (464)
.+...+. .....+...|.+.|++++|...|+.+.+. .|+ ...+..+..++.+.|++++|
T Consensus 141 -------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 141 -------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp -------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 0000000 01134567788899999999999998875 233 24677888999999999999
Q ss_pred HHHHHHHHHCC
Q 047873 219 ELLLHEMCERG 229 (464)
Q Consensus 219 ~~~~~~~~~~~ 229 (464)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 99999888764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-11 Score=94.41 Aligned_cols=163 Identities=11% Similarity=-0.040 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...+..++..+...|++++|+..|++++. ..|+. .++..+..++.+.|++++|+..|+++
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSD-------------------ELQSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCH-------------------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 34455666777777777777777777662 23444 67777777777777777777777776
Q ss_pred HhCCCCCChhcHHHHHHH-HHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC-C
Q 047873 86 RKHYFRIPARGCRCLIDR-MMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA-T 163 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 163 (464)
.... | +...+...... +...+....|+..+++.++..+. +...+..+..++...|++++|...|+++.+....+ +
T Consensus 67 ~~~~-p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 67 PLEY-Q-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp CGGG-C-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred hhcc-C-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 6553 2 33322222111 11222333456666666665543 56666666666666777777777766666553111 2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 164 AVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
...+..+...+...|+.++|...|++..
T Consensus 144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 3355666666666666666666665543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=9.6e-10 Score=95.13 Aligned_cols=169 Identities=10% Similarity=-0.060 Sum_probs=96.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHhcc-CChHHHHHHHHHHHHCCCCC-C----H
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIE---L--DNVAFTALISGFCRG-GKVVEAERMLREMLKVGLKP-D----D 345 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~ 345 (464)
+|..+..+|...|++++|+..+++.++.... + -..++..+...|... |++++|+..|++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4455555555556666665555555432110 0 123566666677774 77777777777766531000 1 2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAV------ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI--- 416 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--- 416 (464)
.++..+...+.+.|++++|+..|+++.+....... ..|..+..++...|++++|...+++..+. .|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 45667777777778888888877777775222111 14566677777778888888888777642 33211
Q ss_pred ---HHHHHHHHHH--hcCCHHHHHHHHHh-cCCCCch
Q 047873 417 ---TYNILLEGHC--KHGNPEDFDKLQSE-KGLVSDY 447 (464)
Q Consensus 417 ---~~~~l~~~~~--~~g~~~~a~~~~~~-~~~~p~~ 447 (464)
.+..++.+|. ..+++++|.+.+++ ..+.|..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2344455554 34566777777665 4455543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-10 Score=91.63 Aligned_cols=173 Identities=14% Similarity=-0.011 Sum_probs=132.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHH----------------HHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRC----------------LIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
.+...+..+...|++++|+..|++....+ |-+...+.. +..++.+.|++++|+..|++.++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 33445566789999999999999998875 335666777 8999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCCCCHHHH
Q 047873 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN--LDEGFRLKSVMEGSGMRPDVYTY 202 (464)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 202 (464)
+. +...+..+..++...|++++|...|++..+.+ +.+..++..+..+|...|. ...+...++.... ..|....+
T Consensus 85 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 PN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 65 88999999999999999999999999998874 4467788888888766553 4445555655542 12333344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047873 203 SALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTL 240 (464)
Q Consensus 203 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 240 (464)
.....++...|++++|+..|++..+. .|+......+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 55666777889999999999999976 5665444433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-08 Score=93.79 Aligned_cols=201 Identities=10% Similarity=0.046 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHH
Q 047873 216 DDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESAL 295 (464)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 295 (464)
+.+..+|+++.... +.+...|...+..+.+.|+. +.|..++++.... +.+...+. .|....+.++.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~------~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~- 261 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQK------EKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV- 261 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH-
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH-
Confidence 34566777777643 33566677666666666554 5888888888776 22322222 12221111221
Q ss_pred HHHHHHHHcC------------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CChH
Q 047873 296 DIRKEMIKRG------------IELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKN-GDTK 362 (464)
Q Consensus 296 ~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~ 362 (464)
++.+.+.- .......|...+....+.++.+.|..+|+++ ... +.+...|...+..-... ++.+
T Consensus 262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSH
T ss_pred --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChH
Confidence 22222210 0011245666677776778889999999888 321 23444444333322223 3688
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
.|..+|+...+. .+-++..+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.+++++
T Consensus 338 ~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 338 TPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999988875 22245566777777788899999999998862 2567777777777778888888777665
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-10 Score=111.21 Aligned_cols=174 Identities=10% Similarity=-0.093 Sum_probs=145.7
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 047873 70 VDLGFLDDAIQCFRLLR--------KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK 141 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (464)
...|++++|++.|++.. ... +.+...+..+...+...|++++|+..|+++++..+. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 78899999999999998 543 456778899999999999999999999999987765 88899999999999
Q ss_pred cCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047873 142 EGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELL 221 (464)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 221 (464)
.|++++|.+.|++..+.+ +.+...+..+..++.+.|++++ .+.|++..+.. +.+...+..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998874 4467888999999999999999 99999998764 34678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047873 222 LHEMCERGLTPNDVIFTTLIDGHCKNGR 249 (464)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (464)
|+++.+.+.. +...+..+..++...+.
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9998876321 35566667777666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-09 Score=92.51 Aligned_cols=168 Identities=10% Similarity=-0.024 Sum_probs=122.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-C-ChhhHH
Q 047873 59 GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP---ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-P-SVYVFN 133 (464)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~ 133 (464)
...+..++..+.+.|++++|+..|+++.... |.+ ..++..++.++.+.|++++|+..|+++++..+. | ...++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3778888889999999999999999998875 333 567888999999999999999999999987543 1 245677
Q ss_pred HHHHHHHh--------cCChhhHHHHHHHHhhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 047873 134 VLMHKLCK--------EGKIKDAQMVFDEFGKRGLHATA-VSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSA 204 (464)
Q Consensus 134 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 204 (464)
.+..++.. .|++++|...|+++.+.. |+. .....+.. +..+.. .....+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~----~~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRA----KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHH----HHHHHHHH
Confidence 78888888 899999999999988763 332 22222211 111110 01122566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc
Q 047873 205 LINGLCKENRLDDAELLLHEMCERGLTP--NDVIFTTLIDGHCKN 247 (464)
Q Consensus 205 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 247 (464)
+..+|.+.|++++|+..|+.+.+..+.. ....+..+..+|...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 8889999999999999999998864321 244666777777755
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-08 Score=86.54 Aligned_cols=230 Identities=10% Similarity=-0.009 Sum_probs=181.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcC--ChhHHHHHHHHHHh
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLG--FLDDAIQCFRLLRK 87 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 87 (464)
+.+..........++|++++.+++ .+.|+. .+|+.-...+...| +++++++.++.+..
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L-------------------~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~ 97 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGI-------------------NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL 97 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH-------------------HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 333333344444578999999998 567777 99999999999999 99999999999998
Q ss_pred CCCCCChhcHHHHHHHH----HcC---CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh--hHHHHHHHHhhC
Q 047873 88 HYFRIPARGCRCLIDRM----MRT---NLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK--DAQMVFDEFGKR 158 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~ 158 (464)
.. |-+..+|+.-...+ ... +++++++.+++++++..+. +..+|+.-..++...|.++ ++++.++++.+.
T Consensus 98 ~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 98 DN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp HC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 86 44566676655555 455 7899999999999998776 8999998888899999998 999999999987
Q ss_pred CCCCCcccHHHHHHHHHhcCC------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCC--
Q 047873 159 GLHATAVSFNTLINGHCKAKN------LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDD-AELLLHEMCERG-- 229 (464)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~-- 229 (464)
+ +.|...|+.....+...+. ++++++.++.++... +-|...|+.+...+.+.|+... +..+..++.+.+
T Consensus 176 d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T 3dra_A 176 D-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD 253 (306)
T ss_dssp C-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT
T ss_pred C-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Confidence 6 4577888877777777776 889999999888765 4588889988888888888544 556777665532
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 230 LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
-..+...+..+..++.+.|+. ++|.++++.+...
T Consensus 254 ~~~s~~al~~la~~~~~~~~~------~~A~~~~~~l~~~ 287 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQQKKY------NESRTVYDLLKSK 287 (306)
T ss_dssp EESCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHccCCH------HHHHHHHHHHHhc
Confidence 133678888899999887665 6999999999863
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.19 E-value=6.8e-09 Score=88.08 Aligned_cols=143 Identities=14% Similarity=0.179 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047873 260 RKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGI-ELDNVAFTALISGFCRGGKVVEAERMLREMLK 338 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (464)
+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444332 22333334455555555555555555555544432 11344455555555555555555555555544
Q ss_pred CCCCC-----CHhhHHHHHHHH--HhcC--ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 339 VGLKP-----DDATYTMVIDCF--CKNG--DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 339 ~~~~~-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 23 133333333331 1122 455555555555443 2332222223335555555555555555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-08 Score=85.59 Aligned_cols=224 Identities=6% Similarity=-0.065 Sum_probs=156.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC--ChhhHHHHHHHHHhcCCCCChhhHHHHHHHH----Hhc-
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN--LPTVTLGFYLEILDYGYSPSVYVFNVLMHKL----CKE- 142 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 142 (464)
.+....++|++.++.+...+ |-...+|+.-...+...+ ++++++..++.++...+. +..+|+.-..++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 33444568999999988876 445677888888888888 899999999999887766 777777655555 555
Q ss_pred --CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChh--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----
Q 047873 143 --GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD--EGFRLKSVMEGSGMRPDVYTYSALINGLCKENR---- 214 (464)
Q Consensus 143 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 214 (464)
+++++++.+++.+.+.. +.+..+|+...-.+.+.|.++ ++++.++.+.+.. .-|..+|+.-...+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 67888888888888764 457777877777777778877 8888888888765 3467777766666666665
Q ss_pred --hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhCCC
Q 047873 215 --LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG--LNPDKITYTILLDGFCKEGD 290 (464)
Q Consensus 215 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 290 (464)
++++++.++++....+. |...|+.+-..+.+.|+.. +.+.....+....+ -..+...+..+..++.+.|+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSI-----TQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCG-----GGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCCh-----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 67777777777766433 6777777777776666542 33444554443321 12345566666667777777
Q ss_pred hHHHHHHHHHHHH
Q 047873 291 LESALDIRKEMIK 303 (464)
Q Consensus 291 ~~~a~~~~~~~~~ 303 (464)
.++|.++++.+.+
T Consensus 274 ~~~A~~~~~~l~~ 286 (306)
T 3dra_A 274 YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777665
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-09 Score=82.49 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
++..++..+...|++++|+.+|+++...+ +.+...+..++..+...|++++|...++++.+.++. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 35556666666777777777777666553 334455555666666666666666666666655432 4455555555666
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
..|++++|.+.++.+.... +.+...+..+...+...|++++|...++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 6666666666666555442 2233444445555555555555555555544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-10 Score=88.96 Aligned_cols=164 Identities=8% Similarity=-0.081 Sum_probs=129.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH-
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK- 138 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 138 (464)
..+..+...+.+.|++++|+..|++..+.. |.+...+..+...+...|++++|+..++++.+..+ ++..+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 566778888999999999999999988765 55678899999999999999999999999887654 44443333222
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChhH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP-DVYTYSALINGLCKENRLDD 217 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 217 (464)
+...+....|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 223334455788898887763 3457888999999999999999999999998774322 35678889999999999999
Q ss_pred HHHHHHHHHH
Q 047873 218 AELLLHEMCE 227 (464)
Q Consensus 218 a~~~~~~~~~ 227 (464)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-10 Score=88.51 Aligned_cols=146 Identities=8% Similarity=-0.105 Sum_probs=105.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
|..++...|++++|+..++...... +-+...+..+...|.+.|++++|++.|+++++..+. ++.+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 4556677788889988888876653 334556677888888889999999999888887765 78888888888888888
Q ss_pred hhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHH-HHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047873 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRL-KSVMEGSGMRPDVYTYSALINGLCKENR 214 (464)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (464)
+++|...|++..+.+ +-+..++..+...|.+.|++++|... +++..+.. +-++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888888888887763 33567778888888888888765554 56666543 3355666666666666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-08 Score=84.56 Aligned_cols=243 Identities=10% Similarity=0.035 Sum_probs=162.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
.-.|++..++.-..++ ....+......+.+++...|++... ....|....+..+.. |...+ |.
T Consensus 24 fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~ 86 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NI 86 (310)
T ss_dssp HTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CC
T ss_pred HHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HH
Confidence 3479999998844432 2122233444456788888888752 122233334443333 33322 78
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 150 MVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGM-RPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
..|+++...+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++.++.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888887664 45666667888999999999999999999876653 236677888999999999999999999999876
Q ss_pred CCCC-----CHHHHHHHHHHHHh--cCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHH
Q 047873 229 GLTP-----NDVIFTTLIDGHCK--NGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEM 301 (464)
Q Consensus 229 ~~~~-----~~~~~~~l~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (464)
.| +..+...+..++.. .|. ++.++|..+|+++... .|+..+-..++.++.+.|++++|...++.+
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~----~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNK----ETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTC----STTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44 24555556655322 230 1236999999998765 344223334444788899999999999876
Q ss_pred HHcC---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCC
Q 047873 302 IKRG---------IELDNVAFTALISGFCRGGKVVEAERMLREMLKVG 340 (464)
Q Consensus 302 ~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (464)
.+.. -+-++.++..++......|+ +|.+++.++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6531 02256667566666666676 7888888888864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-10 Score=83.90 Aligned_cols=108 Identities=7% Similarity=-0.110 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
..+|.-.+..|.+.|++++|++.|++++. ..|+. .+|..+..+|.+.|++++|++.|++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVK-------------------RDPENAILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 45566666667777777777777776662 23333 66666666677777777777777766
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
.+.+ +.+..+|..++.++...|++++|++.|+++++..+. +..++..+
T Consensus 74 l~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 74 IRLD-SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHhh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 6654 345566666666666667777777766666665543 44444433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6e-09 Score=86.28 Aligned_cols=172 Identities=8% Similarity=-0.104 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChh---hHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI--PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVY---VFNV 134 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 134 (464)
..+..++..+.+.|++++|+..|+++....+.. ...++..++.++.+.|++++|+..|+++++..+. +.. ++..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHHH
Confidence 456667778899999999999999998864221 1357888899999999999999999999987654 322 4444
Q ss_pred HHHHHHh------------------cCChhhHHHHHHHHhhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 047873 135 LMHKLCK------------------EGKIKDAQMVFDEFGKRGLHATA-VSFNTLINGHCKAKNLDEGFRLKSVMEGSGM 195 (464)
Q Consensus 135 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 195 (464)
+..++.. .|++++|...|+++.+.. |+. ..+....... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH-----
Confidence 5555544 456666777776666552 222 2221111100 000000
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCccc
Q 047873 196 RPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPN--DVIFTTLIDGHCKNGRIDM 252 (464)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 252 (464)
......+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+++.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 01123567889999999999999999998732211 2567888999999999874
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.5e-10 Score=105.63 Aligned_cols=153 Identities=10% Similarity=-0.084 Sum_probs=119.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHH
Q 047873 20 HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98 (464)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 98 (464)
.|++++|++.|++++ ...|+. .++..+...|.+.|++++|++.|++..+.. +.+...+.
T Consensus 2 ~g~~~~A~~~~~~al-------------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 61 (568)
T 2vsy_A 2 TADGPRELLQLRAAV-------------------RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVA 61 (568)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHH
T ss_pred CccHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 588999999999988 445655 899999999999999999999999999886 55678899
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-
Q 047873 99 CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKA- 177 (464)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 177 (464)
.+...+...|++++|.+.+++.++..+. +...+..+..++...|++++|.+.|++..+.. +.+...+..+...+...
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988765 78899999999999999999999999998774 34577888899999999
Q ss_pred --CChhHHHHHHHHHhhCC
Q 047873 178 --KNLDEGFRLKSVMEGSG 194 (464)
Q Consensus 178 --~~~~~a~~~~~~~~~~~ 194 (464)
|++++|.+.+++..+.+
T Consensus 140 ~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHhcC
Confidence 99999999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-07 Score=85.65 Aligned_cols=357 Identities=8% Similarity=-0.073 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGF-LDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 86 (464)
..|...+..+-. |+++.+..+|++++ ...|+..+|...+....+.+. .+....+|+...
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal-------------------~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCL-------------------KKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHS-------------------TTCCCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHh-------------------ccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 344444444433 67777777777776 456777888888887777763 466777888776
Q ss_pred hC-CC-CCChhcHHHHHHHHHc----CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-------------cCChhh
Q 047873 87 KH-YF-RIPARGCRCLIDRMMR----TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK-------------EGKIKD 147 (464)
Q Consensus 87 ~~-~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ 147 (464)
.. |. +.+...|...+..+.. .++.+.+..+|++++......-...|......-.. .+.+..
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ 155 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQS 155 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHH
Confidence 54 32 3355667776665432 35677888899998874211111222222211111 112233
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcC--C-----hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047873 148 AQMVFDEFGKRGLHATAVSFNTLINGHCKAK--N-----LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAEL 220 (464)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 220 (464)
|..+++.+...--..+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..
T Consensus 156 ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~ 234 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444332100012335555444432221 1 234667888887653 4467788888888899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCC---------C---CCCHHhHHHHHHHHHhC
Q 047873 221 LLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNG---------L---NPDKITYTILLDGFCKE 288 (464)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~ 288 (464)
+|++.... +.+...+.. |......+ +. ++.+...- . ......|...+....+.
T Consensus 235 i~erAi~~--P~~~~l~~~----y~~~~e~~------~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 235 VVERGIEM--SDGMFLSLY----YGLVMDEE------AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp HHHHHHHH--CCSSHHHHH----HHHHTTCT------HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CCcHHHHHH----HHhhcchh------HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 99999987 334333322 22211111 11 22221110 0 01124566667777778
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 047873 289 GDLESALDIRKEMIKRGIELDNVAFTALISGFCRGG-KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRL 367 (464)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 367 (464)
++.+.|..+|+.. .. ...+...|...+..-...+ +.+.|..+|+...+.. +.+...+...++...+.|+.+.|..+
T Consensus 300 ~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999999 32 2234455554333333333 6999999999998853 23345566677777889999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 368 LKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 377 ~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99983 2678888888887888999999999988763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-08 Score=83.86 Aligned_cols=165 Identities=12% Similarity=-0.064 Sum_probs=137.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC----ChhhHHHHHHHHHhcCCCCChhhH
Q 047873 57 LPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN----LPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
.+..++..+...|...+++++|+++|++..+.+ ++.++..+...|.. + ++++|..+|++..+.| ++..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 355888889999999999999999999998876 56778888888887 6 8999999999998865 77788
Q ss_pred HHHHHHHHh----cCChhhHHHHHHHHhhCCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHH
Q 047873 133 NVLMHKLCK----EGKIKDAQMVFDEFGKRGLH-ATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVYTYS 203 (464)
Q Consensus 133 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (464)
..|..+|.. .+++++|.+.|++..+.+.. .+...+..|...|.. .+++++|..+|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 888888887 88999999999999887521 126788889999988 88999999999999876 23555677
Q ss_pred HHHHHHHhc-C-----ChhHHHHHHHHHHHCCC
Q 047873 204 ALINGLCKE-N-----RLDDAELLLHEMCERGL 230 (464)
Q Consensus 204 ~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 230 (464)
.|..+|..- | ++++|..+|+...+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 788887653 3 89999999999988763
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-09 Score=90.28 Aligned_cols=157 Identities=13% Similarity=-0.022 Sum_probs=129.4
Q ss_pred CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHH-
Q 047873 91 RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNT- 169 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 169 (464)
+.+...+..+...+...|++++|...|+++++..+. +...+..+..++...|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 445667888888999999999999999999998765 7889999999999999999999999998776 345443333
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 047873 170 LINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP-NDVIFTTLIDGHCKNG 248 (464)
Q Consensus 170 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 248 (464)
....+...++.+.|...+++..... +.+...+..+...+...|++++|+..|.++.+..... +...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2334667888899999999988764 4567889999999999999999999999999874332 2677889999999999
Q ss_pred Ccc
Q 047873 249 RID 251 (464)
Q Consensus 249 ~~~ 251 (464)
+.+
T Consensus 270 ~~~ 272 (287)
T 3qou_A 270 TGD 272 (287)
T ss_dssp TTC
T ss_pred CCC
Confidence 876
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-09 Score=79.83 Aligned_cols=121 Identities=9% Similarity=-0.108 Sum_probs=80.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHH
Q 047873 2 HFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQ 80 (464)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 80 (464)
..+.++.+|..++..+...|++++|++.|++++ ...|+. .++..+...+...|++++|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~ 71 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAI-------------------KRNPKDAKLYSNRAACYTKLLEFQLALK 71 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHH-------------------TTCTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HcCCCcHHHHHHHHHHHHHhccHHHHHH
Confidence 345667777777777777777777777777777 334433 677777777777777777777
Q ss_pred HHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 047873 81 CFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (464)
.|++..... +.+...+..+..++...|++++|...++++.+..+. +...+..+..++...|
T Consensus 72 ~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 72 DCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 777776654 335566666777777777777777777777665433 4445555555554443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-08 Score=81.64 Aligned_cols=184 Identities=9% Similarity=-0.044 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----ChhhHHHH
Q 047873 76 DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG----KIKDAQMV 151 (464)
Q Consensus 76 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 151 (464)
.+|++.|++..+.+ ++.++..+...+...+++++|+.+|++..+.| ++..+..+..+|.. + ++++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45788888888775 67788888999999999999999999998865 67788888888887 6 89999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHh----cCChhHHHHHH
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMR-PDVYTYSALINGLCK----ENRLDDAELLL 222 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 222 (464)
|++..+.| +...+..+...|.. .+++++|+.+|++..+.|.. .....+..|..+|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 66778888888877 88999999999999877521 126778888888888 88999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCC
Q 047873 223 HEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGL 271 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 271 (464)
++..+. ..+...+..+...|.....-....++++|...|++..+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999886 22445666777777654210012356899999998887664
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.05 E-value=5.9e-10 Score=95.71 Aligned_cols=196 Identities=8% Similarity=0.002 Sum_probs=136.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|.+...+..++..+...|++++|++.|++++. ..|+. .++..+...|.+.|++++|+..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 61 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-------------------RNPLVAVYYTNRALCYLKMQQPEQALADC 61 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45788999999999999999999999999984 34544 89999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA 162 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 162 (464)
++..+.+ +.+...+..++.++...|++++|...|+++++..+. +...+...+....+.. .+.. +........+.
T Consensus 62 ~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~ 135 (281)
T 2c2l_A 62 RRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQ 135 (281)
T ss_dssp HHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhh
Confidence 9999886 556788999999999999999999999998875432 2112221222222111 1111 12222233344
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhc-CChhHHHHHHHHHHHC
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDV-YTYSALINGLCKE-NRLDDAELLLHEMCER 228 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 228 (464)
+......+.. + ..|++++|.+.++...+. .|+. .....+...+.+. +.+++|.++|.++.+.
T Consensus 136 ~~~i~~~l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 136 ESELHSYLTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCHHHHHHHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hHHHHHHHHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4444444433 2 368889999888887765 4443 3334444444444 6678899999887653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=83.36 Aligned_cols=103 Identities=10% Similarity=-0.083 Sum_probs=83.1
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
...|+. ..+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|+++++..+. ++..|
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~ 107 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPV 107 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHH
Confidence 345555 777888888888888888888888888776 556778888888888888888888888888887765 67788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..+..++...|++++|...|++..+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888888888776
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7e-09 Score=98.94 Aligned_cols=155 Identities=10% Similarity=-0.065 Sum_probs=120.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 047873 72 LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMV 151 (464)
Q Consensus 72 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (464)
.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++.++..+. +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999988775 456788999999999999999999999999987765 788999999999999999999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 047873 152 FDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE---NRLDDAELLLHEMCER 228 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 228 (464)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 4467789999999999999999999999998764 34677888999999999 9999999999999887
Q ss_pred CC
Q 047873 229 GL 230 (464)
Q Consensus 229 ~~ 230 (464)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-08 Score=82.12 Aligned_cols=129 Identities=12% Similarity=-0.078 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
...+..++..+...|++++|++.|++++ +|+..++..+...|.+.|++++|++.|++..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~---------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ---------------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS---------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc---------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456677888888999999999888764 3455788888889999999999999999888
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHHhcCChhhHHH
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSV----------------YVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~ 150 (464)
... +.+..++..+..++...|++++|+..|+++++..+. +. ..+..+..++...|++++|.+
T Consensus 65 ~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 142 (213)
T 1hh8_A 65 NRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142 (213)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence 775 456778888888899999999999999988875543 22 667778888888888888888
Q ss_pred HHHHHhhC
Q 047873 151 VFDEFGKR 158 (464)
Q Consensus 151 ~~~~~~~~ 158 (464)
.|+...+.
T Consensus 143 ~~~~al~~ 150 (213)
T 1hh8_A 143 QLALATSM 150 (213)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 88888766
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-09 Score=77.43 Aligned_cols=103 Identities=9% Similarity=-0.147 Sum_probs=87.0
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
.+.|+. ..+...+..|.+.|++++|++.|++..+.+ |.+...|..+..++.+.|++++|+..++++++..+. +...|
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~ 84 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGY 84 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHH
Confidence 456666 778888889999999999999999988876 556788888888899999999999999998887665 77888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..+..++...|++++|.+.|++..+.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88888899999999999999888776
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7.7e-09 Score=80.95 Aligned_cols=129 Identities=9% Similarity=-0.060 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...|..++..+...|++++|++.|++++. ..|+ ..++..++..+...|++++|++.|++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE-------------------LNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-------------------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777777777888888777777763 2233 367777777777777777777777777
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH--HHHHHHhcCChhhHHHHHHHHh
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV--LMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
.... +.+...+..++..+...|++++|...++++++..+. +...+.. .+..+...|++++|.+.+....
T Consensus 74 ~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 74 IELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7664 345566777777777777777777777777765543 4444422 3333556677777777666543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.4e-09 Score=80.39 Aligned_cols=129 Identities=9% Similarity=-0.096 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.+...+.+.+...+.+.+++++ . |.+...+..+...+.+.|++++|+..|+++++..+. ++..|..+..++
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~l-------~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~ 80 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINAI-------P-DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIY 80 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCCS-------C-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHhCC-------C-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4555666666665555554332 2 334556777777888888888888888888877655 777888888888
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVY 200 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 200 (464)
...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+. .|+..
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 88888888888888877764 345677778888888888888888888887765 34443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.2e-09 Score=77.31 Aligned_cols=119 Identities=10% Similarity=-0.047 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL-PGLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
+...|..++..+...|++++|++.|++++.. .| +..++..++..+...|++++|++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 71 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-------------------NPANAVYFCNRAAAYSKLGNYAGAVQDCER 71 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------------------CCCCHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 4556666666666777777777777666631 22 235666666666666777777776666
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
..... +.+...+..++..+...|++++|...++++.+..+. +...+..+..++...|++
T Consensus 72 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 72 AICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 66553 334555666666666666666666666666655433 455555555555555543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-08 Score=88.48 Aligned_cols=170 Identities=9% Similarity=-0.047 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
..|...+.+|...|++++|++.|.+++.- ....+..+.. .+++.+...|...|++++|+..|++..
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~-------------~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEA-------------HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35666666777777777777777776621 1111111111 566777777777777777777777654
Q ss_pred hC----CCCC-ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHhcCChhhHHHHHHHHh
Q 047873 87 KH----YFRI-PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP-----SVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 87 ~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
.. +-+. ...++..+...+.. |++++|+..|++.++..... ...++..+..++...|++++|...|++..
T Consensus 104 ~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 104 VMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 1111 13455666666766 77777777777766532111 13456666777777777777777777665
Q ss_pred hC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 157 KR----GLHAT-AVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 157 ~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
.. +..+. ...+..+..++...|++++|...|++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 43 10000 1234445555666677777777777766
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=7.3e-07 Score=77.27 Aligned_cols=185 Identities=8% Similarity=-0.111 Sum_probs=142.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN-LPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
+++.+-....+.+..++|+++++.+...+ |-+..+|+.-...+...| .+++++..++.++...++ +..+|+.-..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 33444444555666789999999999886 446677888878888888 599999999999988776 888888888777
Q ss_pred Hhc-C-ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChh--------HHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047873 140 CKE-G-KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLD--------EGFRLKSVMEGSGMRPDVYTYSALINGL 209 (464)
Q Consensus 140 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 209 (464)
... + ++++++++++.+.+.. +.|..+|+...-.+.+.+.++ ++++.++++.+.. .-|..+|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 776 7 8899999999998875 457777777666666666666 8999999988775 44788888888888
Q ss_pred HhcCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 210 CKENR-------LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 210 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
.+.+. ++++++.++++....+. |...|+.+-..+.+.|+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 88776 68889999888877533 777887777777666653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-07 Score=79.44 Aligned_cols=233 Identities=11% Similarity=0.037 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcC-ChhHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLG-FLDDAIQCFRLL 85 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~ 85 (464)
.+++.+.......+..++|++++.+++ .+.|+. .+|+.-...+...| .++++++.++.+
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L-------------------~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~ 115 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIV-------------------RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEF 115 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-------------------HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455666555666777788999999998 557777 99999999998889 599999999999
Q ss_pred HhCCCCCChhcHHHHHHHHHcC-C-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh--------hHHHHHHHH
Q 047873 86 RKHYFRIPARGCRCLIDRMMRT-N-LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIK--------DAQMVFDEF 155 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~ 155 (464)
.... |-+..+|+.-...+... + +++++++.++++++..+. +..+|+.-..++...|.++ ++++.++++
T Consensus 116 L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 116 AVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp HHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 9886 55677887777777666 6 889999999999987766 8888888777777777777 899999999
Q ss_pred hhCCCCCCcccHHHHHHHHHhcCC-------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh-------------
Q 047873 156 GKRGLHATAVSFNTLINGHCKAKN-------LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRL------------- 215 (464)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------- 215 (464)
.+.+ +.|...|+.....+.+.+. ++++++.++..+... +-|...|+.+-..+.+.|+.
T Consensus 194 I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 194 LRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp HHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred HHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 8875 4578889888888887776 688888888888764 44777888777777766654
Q ss_pred -------hHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 216 -------DDAELLLHEMCERG-----LTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 216 -------~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
....+....+...+ -.++......+...|...++. ++|.++++.+.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~------~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRV------DDAAKVFEKLSSE 331 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhh
Confidence 22233333332221 135777888888899887765 6899999998654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-08 Score=73.99 Aligned_cols=114 Identities=11% Similarity=0.016 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
..+|..++..+...|++++|++.|++++.. .+.+..++..++..+...|++++|+..|+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 566777777777777777777777777632 11233666777777777777777777777776
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
... +.+...+..+...+...|++++|...++++.+..+. +...+..+..++.
T Consensus 71 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 122 (125)
T 1na0_A 71 ELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 122 (125)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 654 335556666667777777777777777777665443 4444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-08 Score=76.09 Aligned_cols=100 Identities=6% Similarity=-0.152 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.+...|..++..+...|++++|++.|++++. ..|+. .+|..+..+|.+.|++++|+..|+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~-------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 62 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-------------------RAPEDARGYSNRAAALAKLMSFPEAIADCN 62 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------hCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4567888889999999999999999999884 34444 888889999999999999999999
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
+..+.+ |.+...+..+..++...|++++|...|+++++..
T Consensus 63 ~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 63 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 988876 4467788888888889999999999988888754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=8.4e-09 Score=78.91 Aligned_cols=103 Identities=13% Similarity=-0.071 Sum_probs=88.3
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
...|+. ..+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++++...+. ++..+
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~ 92 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFP 92 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHH
Confidence 556666 788888999999999999999999988876 557788888899999999999999999999887765 77888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..+..++...|++++|.+.|+...+.
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999999988765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=85.32 Aligned_cols=196 Identities=9% Similarity=-0.111 Sum_probs=148.3
Q ss_pred hCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHH-------HHHHHhcCChhHHHHHHHHHHhCCC
Q 047873 19 AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDAL-------MIVYVDLGFLDDAIQCFRLLRKHYF 90 (464)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~ 90 (464)
..+++.+|.+.|.++. ...|+. ..|..+ ...+.+.++..+++..+..-...
T Consensus 18 ~~~d~~~A~~~F~~a~-------------------~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l-- 76 (282)
T 4f3v_A 18 LPMSEARSLDLFTEIT-------------------NYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI-- 76 (282)
T ss_dssp TTTCHHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--
T ss_pred cCCCHHHHHHHHHHHH-------------------HhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 6899999999999998 456666 889888 67788888888888888776552
Q ss_pred CCC----------------------hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 91 RIP----------------------ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 91 ~~~----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
.|. ..........+...|++++|.++|+.+...++. +. ....+...+.+.+++++|
T Consensus 77 ~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA 154 (282)
T 4f3v_A 77 SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDV 154 (282)
T ss_dssp CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHH
T ss_pred ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHH
Confidence 111 123345667788999999999999998876532 33 666677789999999999
Q ss_pred HHHHHHHhhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHH
Q 047873 149 QMVFDEFGKRGLHAT--AVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD--VYTYSALINGLCKENRLDDAELLLHE 224 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~ 224 (464)
+..|+...... .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|++
T Consensus 155 ~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 155 IDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998655431 111 24678888999999999999999999985433243 34566788889999999999999999
Q ss_pred HHHCCCCCCHHHHHHH
Q 047873 225 MCERGLTPNDVIFTTL 240 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~l 240 (464)
+.... |+...+..|
T Consensus 234 a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 234 LQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHS--CCHHHHHHH
T ss_pred HHhcC--CcHHHHHHH
Confidence 99874 444433333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=6e-09 Score=82.70 Aligned_cols=120 Identities=8% Similarity=-0.003 Sum_probs=88.7
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhc
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARG 96 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 96 (464)
...|++++|++.|++++. ..|+. .+|..+...|...|++++|+..|++..... +.+...
T Consensus 21 ~~~~~~~~A~~~~~~al~-------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 80 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR-------------------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAEL 80 (177)
T ss_dssp C-----CCCCHHHHHHHH-------------------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHH
T ss_pred hhccCHHHHHHHHHHHHH-------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 456778888888888773 23433 788888888888888888888888887765 345667
Q ss_pred HHHHHHH-HHcCCCh--hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 97 CRCLIDR-MMRTNLP--TVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 97 ~~~l~~~-~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
+..+..+ +...|++ ++|...++++++..+. +...+..+..++...|++++|...|+...+.
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777 6678887 8888888888877654 6777778888888888888888888888776
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.91 E-value=9.8e-09 Score=90.54 Aligned_cols=145 Identities=11% Similarity=-0.090 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
+..+|..++..|...|++++|+..|++++........... .... ...+. ..++..+..+|.+.|++++|+..|++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~---~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-EEAQ---KAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-HHHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-HHHH---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678899999999999999999999999853211000000 0000 00000 26778888888888888888888888
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH-HHHHHHHh
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA-QMVFDEFG 156 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 156 (464)
..+.. +.+..++..+..++...|++++|+..|+++++..+. +..++..+..++...|+.++| ..+|..|.
T Consensus 222 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 222 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88775 446777888888888888888888888888877654 677777788888888888777 34555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-07 Score=77.42 Aligned_cols=127 Identities=9% Similarity=-0.090 Sum_probs=102.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+..+...+...|++++|+..|++.. .++..++..++..+...|++++|+..++++++..+. +...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 34556777889999999999998763 457788899999999999999999999999887654 7888889999999
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCc----------------ccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATA----------------VSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
..|++++|.+.|++..+.. +.+. ..+..+..++...|++++|...++...+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999988753 2222 55667777777778888888777777765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-08 Score=76.73 Aligned_cols=102 Identities=9% Similarity=-0.098 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|.+..++..++..+...|++++|+..|++++. ..|++ ..|..+..+|...|++++|+..|
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV-------------------LDHYDSRFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------------------cCcccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34677888999999999999999999999983 34544 89999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
++....+ |.+...+..+..++...|++++|...|+++++..+
T Consensus 79 ~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 79 SYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999886 45678889999999999999999999999988654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-08 Score=77.83 Aligned_cols=95 Identities=19% Similarity=-0.049 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|+++++..+. ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 333444444444444444444444444433 223344444444444444444444444444444332 334444444444
Q ss_pred HhcCChhhHHHHHHHHh
Q 047873 140 CKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~ 156 (464)
...|++++|.+.|+...
T Consensus 97 ~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-07 Score=79.18 Aligned_cols=163 Identities=9% Similarity=-0.063 Sum_probs=104.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCC-CCh----hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CC----hhhHHH
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFR-IPA----RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PS----VYVFNV 134 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 134 (464)
.+..+...|++++|...+++....... ++. ..+..++..+...+++++|+..++++++.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677788888888888887664311 111 12234556666677888888888888764322 22 225777
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhC-----CCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCC-HHHHH
Q 047873 135 LMHKLCKEGKIKDAQMVFDEFGKR-----GLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGS----GMRPD-VYTYS 203 (464)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 203 (464)
+..+|...|++++|...|++..+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777888888888888888777631 1111 1235677777788888888888877766532 21112 55677
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHH
Q 047873 204 ALINGLCKENR-LDDAELLLHEMCE 227 (464)
Q Consensus 204 ~l~~~~~~~~~-~~~a~~~~~~~~~ 227 (464)
.+..++.+.|+ +++|.+.|++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77778888884 5788877777653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-08 Score=80.21 Aligned_cols=120 Identities=12% Similarity=-0.023 Sum_probs=69.0
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-C
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH----YF-R 91 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~ 91 (464)
...|++++|.+.++.+. +.++.. .++..+...+...|++++|+..|++.... +. +
T Consensus 3 ~~~g~~~~A~~~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 63 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-------------------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63 (203)
T ss_dssp ----CHHHHHHHHHHHH-------------------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH
T ss_pred cccccHHHHHHHHHHhc-------------------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH
Confidence 45788888888655554 333333 77777888888888888888888776552 11 1
Q ss_pred CChhcHHHHHHHHHcCCChhhHHHHHHHHHhc---CC-CC--ChhhHHHHHHHHHhcCChhhHHHHHHHHh
Q 047873 92 IPARGCRCLIDRMMRTNLPTVTLGFYLEILDY---GY-SP--SVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
....++..+...+...|++++|...+++.++. .. .+ ....+..+...+...|++++|...+++..
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12344556666666677777777666665543 11 11 12334455555556666666666555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.7e-06 Score=72.55 Aligned_cols=162 Identities=10% Similarity=0.050 Sum_probs=121.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHhccCChHHHHHHHHHHHHCCCC-CC----HhhH
Q 047873 279 TILLDGFCKEGDLESALDIRKEMIKRGIE-LDN----VAFTALISGFCRGGKVVEAERMLREMLKVGLK-PD----DATY 348 (464)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 348 (464)
...+..+...|++++|..+++...+.... |+. ..+..+...+...+++++|...++++...... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 33467788899999999999998875322 221 13335667777888999999999999884322 22 2368
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHH
Q 047873 349 TMVIDCFCKNGDTKTGFRLLKEMRSD-----GHLP-AVETYNALMNGLCKHGQLKNANMLLDTMLD----LGVVPD-DIT 417 (464)
Q Consensus 349 ~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~-~~~ 417 (464)
+.+..+|...|++++|...|+++.+. +..+ ...++..+...|.+.|++++|...+++..+ .+..+. ...
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999999999998852 1112 234788899999999999999999998874 222222 678
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHh
Q 047873 418 YNILLEGHCKHGN-PEDFDKLQSE 440 (464)
Q Consensus 418 ~~~l~~~~~~~g~-~~~a~~~~~~ 440 (464)
+..+..+|.+.|+ +++|.+.+++
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHH
Confidence 8889999999995 5888887765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-08 Score=73.49 Aligned_cols=106 Identities=8% Similarity=-0.019 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
...++.-++..+.+.|++++|++.|++++ .+.|+. .+|..+..+|...|++++|++.|++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al-------------------~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAI-------------------ELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 45678889999999999999999999988 345555 8888899999999999999999988
Q ss_pred HHhCCCCC--C----hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 85 LRKHYFRI--P----ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 85 ~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
..+.+... . ..++..++.++...|++++|++.|++.++.. |++.+.
T Consensus 68 al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~ 119 (127)
T 4gcn_A 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELV 119 (127)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHH
T ss_pred HHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHH
Confidence 87653111 1 2356667777778888888888888877643 454443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.6e-08 Score=83.18 Aligned_cols=168 Identities=14% Similarity=0.018 Sum_probs=110.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHhccCChHHHHHHHHHHHHCC--C-CCC--Hh
Q 047873 277 TYTILLDGFCKEGDLESALDIRKEMIKRGIE---L--DNVAFTALISGFCRGGKVVEAERMLREMLKVG--L-KPD--DA 346 (464)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~--~~ 346 (464)
.|......|...|++++|...+.+..+.... + -..+|..+...|...|++++|...+++..+.. . .+. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455566777788888888888776653111 0 13467777788888888888888888766431 0 111 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC---Cc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HH
Q 047873 347 TYTMVIDCFCKNGDTKTGFRLLKEMRSDGH---LP--AVETYNALMNGLCKHGQLKNANMLLDTMLDL----GVVPD-DI 416 (464)
Q Consensus 347 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~ 416 (464)
++..+..+|.. |++++|+..|++..+... .+ ...++..+...|.+.|++++|+..+++..+. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 66777777877 888888888887766310 00 1456777788888888888888888877642 11111 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc
Q 047873 417 TYNILLEGHCKHGNPEDFDKLQSE-KGLVSD 446 (464)
Q Consensus 417 ~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~ 446 (464)
.+..+..++...|++++|...+++ + +.|+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 555566667777888888888887 5 6664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.84 E-value=8.6e-08 Score=74.87 Aligned_cols=128 Identities=13% Similarity=-0.031 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+...|++++|+..|++..... +.+..++..++..+...|++++|...+++.++..+. +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 456667777777888888888888777664 345666777777777777777777777777766543 566677777777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHH--HHHHHHhcCChhHHHHHHHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNT--LINGHCKAKNLDEGFRLKSVM 190 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~ 190 (464)
...|++++|...|++..... +.+...+.. .+..+...|++++|...+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777766542 223333322 222244556666666655544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=71.03 Aligned_cols=116 Identities=9% Similarity=-0.089 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+.+.|++++|+..|++..... +.+...+..+...+...|++++|...++++++..+. +...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 788888888999999999999999888775 446777888888888889999999998888886654 677888888888
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (464)
...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 88888888888888877653 223445555555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=8.3e-08 Score=69.92 Aligned_cols=110 Identities=9% Similarity=-0.118 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL-PGLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
++..|..++..+...|++++|+..|++++. ..| +..++..+...+...|++++|+..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK-------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------------------HCCCcHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 456778888888888888888888888873 233 347777888888888888888888888
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 136 (464)
..... +.+...+..+..++...|++++|...+++..+..+. +...+..+.
T Consensus 64 ~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 113 (118)
T 1elw_A 64 TVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ 113 (118)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred HHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 87765 345667777777888888888888888887776543 444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.6e-08 Score=71.15 Aligned_cols=103 Identities=7% Similarity=-0.108 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
|.+...|..++..+...|++++|+..|++++.. .+.+..++..+...+...|++++|++.|+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 64 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL------------------DPEESKYWLMKGKALYNLERYEEAVDCYN 64 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------------------CcCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 445667777777777788888888887777632 12233667777777777777777777777
Q ss_pred HHHhCCCCC--ChhcHHHHHHHHHcC-CChhhHHHHHHHHHhcCC
Q 047873 84 LLRKHYFRI--PARGCRCLIDRMMRT-NLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 84 ~~~~~~~~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 125 (464)
+..+.. +. +...+..+...+... |++++|.+.++++....+
T Consensus 65 ~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 65 YVINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 777664 33 456666777777777 777777777777776543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.8e-08 Score=76.31 Aligned_cols=103 Identities=14% Similarity=-0.047 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
+.+...|..++..+...|++++|++.|++++. ..|+. .+|..+..+|.+.|++++|+..|
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 68 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALS-------------------IAPANPIYLSNRAAAYSASGQHEKAAEDA 68 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCCcCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34567788888888888888888888888873 33444 78888888888888888888888
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 126 (464)
++....+ +.+...+..+..++...|++++|...|+++++..+.
T Consensus 69 ~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 69 ELATVVD-PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 8888775 445777888888888888888888888888876543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.7e-07 Score=77.25 Aligned_cols=165 Identities=9% Similarity=-0.034 Sum_probs=100.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-----hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC---CC--hhh
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA-----RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS---PS--VYV 131 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~ 131 (464)
+...+..+...|++++|++.++.........+. ..+..++..+...|++++|+..+++.++.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677778888888887776655321110 12334555566677788888877777653221 11 336
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhC-CCCCC-----cccHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHH
Q 047873 132 FNVLMHKLCKEGKIKDAQMVFDEFGKR-GLHAT-----AVSFNTLINGHCKAKNLDEGFRLKSVMEGS----GMRP-DVY 200 (464)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 200 (464)
++.+...|...|++++|...|++..+. ...++ ..++..+...|...|++++|...+++..+. +... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 677777777788888887777776521 00111 146667777777778888777777766532 1111 145
Q ss_pred HHHHHHHHHHhcCChhHH-HHHHHHHH
Q 047873 201 TYSALINGLCKENRLDDA-ELLLHEMC 226 (464)
Q Consensus 201 ~~~~l~~~~~~~~~~~~a-~~~~~~~~ 226 (464)
+|..+..+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 667777777777777777 66566554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5e-09 Score=92.43 Aligned_cols=97 Identities=8% Similarity=-0.020 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--------------ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
..+..+...|.+.|++++|+..|++......... ..++..+..++.+.|++++|+..++++++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5566666667777777777777776665541111 23444444444444444444444444444332
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHhh
Q 047873 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
. +..++..+..++...|++++|...|++..+
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 344444444444444444444444444433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.9e-07 Score=78.12 Aligned_cols=173 Identities=8% Similarity=-0.077 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
...+...+..+...|++++|++.+++.+......... .. ....+..+...+...|++++|+..|++..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF---QQ---------FLQWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH---HH---------HHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH---HH---------HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3455667788899999999999999988532210000 00 00234456777888999999999999987
Q ss_pred hCCCC---CC--hhcHHHHHHHHHcCCChhhHHHHHHHHHh---cCCC-C--ChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 047873 87 KHYFR---IP--ARGCRCLIDRMMRTNLPTVTLGFYLEILD---YGYS-P--SVYVFNVLMHKLCKEGKIKDAQMVFDEF 155 (464)
Q Consensus 87 ~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (464)
..... +. ..++..++..+...|++++|...++++++ .... + ...++..+..+|...|++++|...+++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 54211 11 34788899999999999999999999873 2211 1 1257888999999999999999999987
Q ss_pred hhCC----CCC-CcccHHHHHHHHHhcCChhHH-HHHHHHHh
Q 047873 156 GKRG----LHA-TAVSFNTLINGHCKAKNLDEG-FRLKSVME 191 (464)
Q Consensus 156 ~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 191 (464)
.... ... -..+|..+..+|.+.|++++| ...++...
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6431 111 145678889999999999999 77777665
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-07 Score=71.09 Aligned_cols=109 Identities=6% Similarity=-0.148 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP----GLVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 79 (464)
+.+...|..++..+...|++++|++.|++++ ...|+ ..++..+...|...|++++|+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-------------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 85 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQAL-------------------GLDATPQDQAVLHRNRAACHLKLEDYDKAE 85 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-------------------TSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------------------HHcccchHHHHHHHHHHHHHHHHccHHHHH
Confidence 4566777777777777777777777777777 34444 356666777777777777777
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 80 QCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
..|++..... +.+...+..+..++...|++++|...+++.++..+. +...+.
T Consensus 86 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 137 (148)
T 2dba_A 86 TEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQE 137 (148)
T ss_dssp HHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHH
T ss_pred HHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHH
Confidence 7777766654 334556666667777777777777777777665432 344433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=8.6e-08 Score=71.31 Aligned_cols=118 Identities=7% Similarity=-0.119 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+...|++++|+..|++..... +.+...+..+...+...|++++|...++++.+..+. +...+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHH
Confidence 667777778888888888888888877764 345667777777788888888888888887776543 566777777777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCh
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (464)
...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 78888888888887776653 23455566666666655543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.6e-08 Score=74.26 Aligned_cols=110 Identities=9% Similarity=-0.147 Sum_probs=90.9
Q ss_pred HHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 81 CFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
.|+++...+ |.+...+..+...+...|++++|...|++++...+. +...|..+..++...|++++|...|+.....+
T Consensus 6 ~l~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 82 (142)
T 2xcb_A 6 TLAMLRGLS-EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD- 82 (142)
T ss_dssp ---CCTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHcCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344444433 334556777888899999999999999999988765 88899999999999999999999999998875
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 161 HATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
+.+...+..+..++...|++++|...|+...+.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778889999999999999999999998765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-07 Score=68.59 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+...|++++|++.|+++.... +.+...+..++..+...|++++|...++++.+..+. +..++..+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 567777777888888888888888877664 345566777777777778888888888777766543 566677777777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (464)
...|++++|...++++.+.. +.+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 77777777777777776553 22333444444333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.7e-08 Score=78.05 Aligned_cols=121 Identities=9% Similarity=0.012 Sum_probs=80.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCh--h
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK-LCKEGKI--K 146 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 146 (464)
...|++++|+..|+...... +.+...+..+...+...|++++|...|+++++..+. +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 45677777777777776664 445667777777777777777777777777766543 56666666666 6677776 7
Q ss_pred hHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 147 DAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
+|...++...+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777776653 234556666777777777777777777776655
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=4e-08 Score=84.28 Aligned_cols=195 Identities=12% Similarity=-0.012 Sum_probs=131.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 59 GLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
...+..++..+.+.|++++|+..|++..... +.+...+..+..++.+.|++++|+..++++++..+. +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3677888899999999999999999998875 447788999999999999999999999999987654 78889999999
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047873 139 LCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDA 218 (464)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 218 (464)
+...|++++|...|++..+.+ +.+...+...+....+ ...+..... ........+......+... ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 999999999999999887652 1111122222222221 111122221 2222234444444444332 26888999
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 219 ELLLHEMCERGLTPNDV-IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
++.++...+. .|+.. ....+...+.+.+ +.++++.++|..+.+.
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~-----~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHD-----KYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHH-----HHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHH-----HHHHHHHHHHHhhhcc
Confidence 9998887765 34433 3333333333331 1235788888877653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-07 Score=75.40 Aligned_cols=144 Identities=8% Similarity=-0.102 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCCh--HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSS--ASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
....|..++..+...|++++|++.|++++......+. ......... .....++..+..+|.+.|++++|+..++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3567888999999999999999999999853211000 000000000 0001577778888888888888888888
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH-HHHHHH
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ-MVFDEF 155 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~ 155 (464)
+..... +.+..++..+..++...|++++|...|+++++..+. +..++..+..++...++..++. ..+..+
T Consensus 113 ~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 113 KVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765 446677788888888888888888888888876554 6667777777776666666555 344444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-07 Score=70.50 Aligned_cols=100 Identities=6% Similarity=-0.044 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
+.++..|..++..+...|++++|+..|++++. ..|+. .++..+...+...|++++|+..|
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 66 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-------------------RNPLVAVYYTNRALCYLKMQQPEQALADC 66 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh-------------------hCcCcHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34566777777777777777777777777763 23333 66677777777777777777777
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
++....+ +.+...+..+..++...|++++|...|+++++.
T Consensus 67 ~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 67 RRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7766654 334556666666666777777777766666553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-07 Score=75.76 Aligned_cols=62 Identities=13% Similarity=-0.031 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047873 276 ITYTILLDGFCKEGDLESALDIRKEMIKR----GI-ELDNVAFTALISGFCRGGKVVEAERMLREML 337 (464)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (464)
.++..+...+...|++++|...+++..+. +. .....++..+...+...|++++|...+++..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444455555555555555444431 00 0112234444444444444444444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-08 Score=81.44 Aligned_cols=96 Identities=8% Similarity=0.002 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----------------hcHHHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA----------------RGCRCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
..+..+...+...|++++|++.|++....... +. .++..+..++...|++++|+..++++++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45556666677777777777777776664311 11 34444444444555555555555554444
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhh
Q 047873 124 GYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
.+. +..++..+..++...|++++|.+.|++..+
T Consensus 118 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 DKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 322 344444444444455555555555444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.68 E-value=9e-08 Score=71.22 Aligned_cols=112 Identities=9% Similarity=-0.054 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...+|..++..+...|++++|+..|++++.. .+.+..++..++..|...|++++|+..|++.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL------------------DPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------------------CCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4677888889999999999999999988742 1223477888888888999999999999888
Q ss_pred HhCCCC--CC----hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 86 RKHYFR--IP----ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 86 ~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
...... ++ ..++..+...+...|++++|...++++.+.. |+......+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 765411 11 5567777777888888888888888877754 34544444433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=79.07 Aligned_cols=200 Identities=10% Similarity=-0.068 Sum_probs=144.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhcHHHH-------HHHHHcCCChhhHHHHHHHHHhcCCC-----CC-------
Q 047873 68 VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCL-------IDRMMRTNLPTVTLGFYLEILDYGYS-----PS------- 128 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~------- 128 (464)
++ +.++...|++.|.++.+.+ |-....|..+ ...+...++..+++..+...+...+. -+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 44 6899999999999999986 4467788877 56676667777777777766552110 00
Q ss_pred --------hhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--
Q 047873 129 --------VYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD-- 198 (464)
Q Consensus 129 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 198 (464)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 2233456778899999999999999987653 433366666778889999999999998665432 111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHH
Q 047873 199 VYTYSALINGLCKENRLDDAELLLHEMCERGLTPN--DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKI 276 (464)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 276 (464)
...+..+..++...|++++|++.|++.......|. .........++.+.|+. ++|...|+++.... |+..
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~------deA~~~l~~a~a~~--P~~~ 242 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE------SAAVALLEWLQTTH--PEPK 242 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHS--CCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcC--CcHH
Confidence 33677889999999999999999999985433243 33556667778887776 69999999998864 4443
Q ss_pred hHHH
Q 047873 277 TYTI 280 (464)
Q Consensus 277 ~~~~ 280 (464)
....
T Consensus 243 ~~~a 246 (282)
T 4f3v_A 243 VAAA 246 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=7.7e-08 Score=70.57 Aligned_cols=91 Identities=11% Similarity=-0.017 Sum_probs=40.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
+...+.+.|++++|+..|++..+.. |.+...+..+..++...|++++|+..|+++++..+. +...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3344444444444444444444433 223344444444444444444444444444444332 34444444444444444
Q ss_pred hhhHHHHHHHHhh
Q 047873 145 IKDAQMVFDEFGK 157 (464)
Q Consensus 145 ~~~a~~~~~~~~~ 157 (464)
+++|...+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.5e-07 Score=67.06 Aligned_cols=97 Identities=9% Similarity=-0.046 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..++++++..+. +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 566677778888888888888888887775 446677888888888888888888888888877654 677777888888
Q ss_pred HhcCChhhHHHHHHHHhhC
Q 047873 140 CKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~ 158 (464)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888888877654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=8.1e-06 Score=70.45 Aligned_cols=187 Identities=10% Similarity=-0.081 Sum_probs=136.6
Q ss_pred hCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCC----------hhHHHHHHHHHH
Q 047873 19 AHKMHS-QARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGF----------LDDAIQCFRLLR 86 (464)
Q Consensus 19 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~----------~~~A~~~~~~~~ 86 (464)
+.|.+. +|++++..++ ...|+. .+|+.--..+...|. +++++.+++.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L-------------------~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L 101 (331)
T 3dss_A 41 QAGELDESVLELTSQIL-------------------GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 101 (331)
T ss_dssp HTTCCSHHHHHHHHHHH-------------------TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHH-------------------HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 566664 7888888888 778888 888877776665554 678999999988
Q ss_pred hCCCCCChhcHHHHHHHHHcCCC--hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hhhHHHHHHHHhhCCCCCC
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNL--PTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK-IKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~ 163 (464)
..+ |-+..+|..-...+...+. +++++..++++++..+. |..+|+.-..++...|. ++++++.++.+...+ +.|
T Consensus 102 ~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N 178 (331)
T 3dss_A 102 RVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSN 178 (331)
T ss_dssp HHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCC
T ss_pred HhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCC
Confidence 876 4577788777777777774 78999999999988776 88888888888888888 588999999988875 457
Q ss_pred cccHHHHHHHHHhc--------------CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----------CChhHH
Q 047873 164 AVSFNTLINGHCKA--------------KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE-----------NRLDDA 218 (464)
Q Consensus 164 ~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a 218 (464)
...|+.....+... +.++++++.+....... +-|..+|+-+-..+.+. +.++++
T Consensus 179 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~e 257 (331)
T 3dss_A 179 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSE 257 (331)
T ss_dssp HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 77787776666554 34667777777776553 34666666554444443 335666
Q ss_pred HHHHHHHHHC
Q 047873 219 ELLLHEMCER 228 (464)
Q Consensus 219 ~~~~~~~~~~ 228 (464)
++.++++.+.
T Consensus 258 l~~~~elle~ 267 (331)
T 3dss_A 258 LESCKELQEL 267 (331)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7777777665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.8e-07 Score=66.71 Aligned_cols=96 Identities=16% Similarity=-0.039 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG----LVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
++..++..+...|++++|++.|++++.. .|+. .++..+...+.+.|++++|+..|++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 64 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-------------------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRD 64 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-------------------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4555667777888888888888887742 2222 4667777778888888888888887
Q ss_pred HHhCCCCCC---hhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 85 LRKHYFRIP---ARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 85 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
+.... |.+ ..++..+..++...|++++|...|+++++..
T Consensus 65 ~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 65 LVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77664 223 4556667777777777777777777777654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-06 Score=63.99 Aligned_cols=97 Identities=13% Similarity=-0.031 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..++..+...|++++|++.|++..... +.+...+..+...+...|++++|...++++.+..+. +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 456667777777888888888888877664 345666777777777778888888777777776543 566677777777
Q ss_pred HhcCChhhHHHHHHHHhhC
Q 047873 140 CKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~ 158 (464)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 7777777777777777655
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-08 Score=93.35 Aligned_cols=127 Identities=9% Similarity=-0.062 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
+..+|..++..+...|++++|++.|++++. ..|+. .++..+..+|.+.|++++|++.|++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~-------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 65 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIE-------------------LNPSNAIYYGNRSLAYLRTECYGYALGDATR 65 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344556667778889999999999999984 34554 8899999999999999999999999
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhhHHHHHH
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHK--LCKEGKIKDAQMVFD 153 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 153 (464)
..+.+ +.+..++..+..++...|++++|.+.++++++..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 66 al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 66 AIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 98886 456778888999999999999999999999887654 55566666655 788899999999888
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.3e-07 Score=67.24 Aligned_cols=98 Identities=7% Similarity=-0.081 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC--C----hhhHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP--S----VYVFN 133 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 133 (464)
.++..++..+.+.|++++|++.|++..+.. |.+..+|..+..++...|++++|+..+++.++..+.. + ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456677888888888888888888887775 4456777778888888888888888888877643221 1 12455
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+..++...|++++|++.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666666777777777777766553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.4e-07 Score=72.05 Aligned_cols=109 Identities=10% Similarity=0.006 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCC---------CCCh-hhHHHHHHHHHhcCCh
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT---------HLPG-LVLDALMIVYVDLGFL 75 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~l~~~~~~~g~~ 75 (464)
.+..|...+..+...|++++|+..|.+++.. +...... .. .|.. .++..+..+|.+.|++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~ 79 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTR---------LDTLILR-EKPGEPEWVELDRKNIPLYANMSQCYLNIGDL 79 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHHHHHT-SCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHhccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 4667889999999999999999999999842 1111110 00 2233 6788888899999999
Q ss_pred hHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 76 DDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 76 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
++|+..++.....+ |.+..++..++.++...|++++|...|+++++..+
T Consensus 80 ~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 80 HEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 99999999988876 55677888888899999999999999999888654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.5e-05 Score=65.82 Aligned_cols=196 Identities=11% Similarity=-0.021 Sum_probs=140.1
Q ss_pred HHhcCChh-HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC----------hhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 69 YVDLGFLD-DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL----------PTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 69 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
..+.|.++ +|+++++.+...+ |-+..+|+.-...+...+. +++++.+++.++...+. +..+|+.-..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44566655 8999999999886 4455666655555544443 57899999999988776 8899998888
Q ss_pred HHHhcCC--hhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--
Q 047873 138 KLCKEGK--IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKN-LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE-- 212 (464)
Q Consensus 138 ~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 212 (464)
++...++ +++++.+++.+.+.. +.|..+|+.-.-.+...|. ++++++.++.+++.. +-|..+|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 8888884 899999999999875 4578888888888888888 589999999998875 44777888777666655
Q ss_pred ------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCccc----ccCHHHHHHHHHHHHhC
Q 047873 213 ------------NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKN-GRIDM----AGDMKEARKIVDEMCTN 269 (464)
Q Consensus 213 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~----~~~~~~a~~~~~~~~~~ 269 (464)
+.++++++.+.......+. |...|+.+-..+... |..+. .+.++++++.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 4478889999988876433 677776554444443 11000 02245556666666553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-06 Score=68.63 Aligned_cols=97 Identities=6% Similarity=-0.208 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..+...+.+.|++++|++.|++..... +.+...+..+..++...|++++|+..++++++..+. +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 778888889999999999999999988876 446778888999999999999999999999987755 788888899999
Q ss_pred HhcCChhhHHHHHHHHhhC
Q 047873 140 CKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~ 158 (464)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999999988776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-07 Score=85.47 Aligned_cols=137 Identities=12% Similarity=-0.050 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCCh-HHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSS-ASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
....|..++..|.+.|++++|+..|++++........ ..-...- ..+. ..+|..+..+|.+.|++++|+..|+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~-----~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA-----SESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH-----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHH-----HHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4567889999999999999999999999853211000 0000000 0000 2566667777777777777777777
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
+..... +.+..++..+..++...|++++|+..|+++++..+. +..++..+..++...++.+++.
T Consensus 342 ~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 342 KALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 776664 345666666777777777777777777777765543 5566666666666666666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.2e-07 Score=66.56 Aligned_cols=97 Identities=8% Similarity=-0.104 Sum_probs=85.6
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (464)
..+..+...+.+.|++++|+..++++++..+. +...|..+..++...|++++|+..|++..+.+ +.+...+..+..++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34667778889999999999999999998765 88999999999999999999999999998874 34677888999999
Q ss_pred HhcCChhHHHHHHHHHhhC
Q 047873 175 CKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 175 ~~~~~~~~a~~~~~~~~~~ 193 (464)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999865
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5e-07 Score=80.55 Aligned_cols=133 Identities=5% Similarity=-0.116 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHH------HhcCCCCCh-hhHHHHHHHHHhcCChhHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASIL------ETRGTHLPG-LVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 79 (464)
...|..++..+.+.|++++|++.|++++.. ..... ......|.. .+|..+..+|.+.|++++|+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---------~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 293 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY---------VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV 293 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---------hhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 456888999999999999999999999841 11000 000122333 67778888888888888888
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 80 QCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
+.+++..+.. +.+..++..+..++...|++++|+..|+++++..+. +...+..+..++...++.+++.+
T Consensus 294 ~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 294 DSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888775 445677777888888888888888888888776544 56666666666666666555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-06 Score=63.28 Aligned_cols=98 Identities=10% Similarity=-0.051 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-CChhhHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-PSVYVFNVLMHK 138 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 138 (464)
.++..++..+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++++..+. .+...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 566667777777777777777777776654 335566666777777777777777777777665321 035566666667
Q ss_pred HHhc-CChhhHHHHHHHHhhC
Q 047873 139 LCKE-GKIKDAQMVFDEFGKR 158 (464)
Q Consensus 139 ~~~~-~~~~~a~~~~~~~~~~ 158 (464)
+... |++++|.+.++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 7777 7777777777776655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=67.52 Aligned_cols=87 Identities=10% Similarity=-0.061 Sum_probs=63.7
Q ss_pred hCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCC---CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 047873 19 AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT---HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA 94 (464)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 94 (464)
..|++++|++.|++++ .. .|+. .++..+...|...|++++|++.|++..+.. |-+.
T Consensus 2 ~~g~~~~A~~~~~~al-------------------~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 61 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAI-------------------ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQ 61 (117)
T ss_dssp -----CCCHHHHHHHH-------------------SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCCcHHHHHHHHHHHH-------------------HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCch
Confidence 3678888888888887 33 2444 778888888888888888888888888775 4456
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
..+..+..++...|++++|+..+++.++..+
T Consensus 62 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 62 ALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7777788888888888888888888877543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-06 Score=64.70 Aligned_cols=99 Identities=11% Similarity=-0.072 Sum_probs=77.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
+...+..+...+...|++++|+..|+...... +.+...+..+..++...|++++|...++++++..+. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34777788888888888888888888887765 445677788888888888888888888888876654 6777778888
Q ss_pred HHHhcCChhhHHHHHHHHhhC
Q 047873 138 KLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~ 158 (464)
++...|++++|...|+.....
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888888777654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.7e-06 Score=77.98 Aligned_cols=214 Identities=12% Similarity=-0.007 Sum_probs=142.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI 92 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 92 (464)
-.+.+...|++++|++.|..+++................. .......++..++..|...|++++|.+.+..+.......
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDK-RRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSH-HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3566788999999999999998643211100000000000 000001357789999999999999999998876531111
Q ss_pred -Ch----hcHHHHHHHHHcCCChhhHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHhhC--CC
Q 047873 93 -PA----RGCRCLIDRMMRTNLPTVTLGFYLEILDY----GYSP-SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR--GL 160 (464)
Q Consensus 93 -~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~ 160 (464)
+. .+...+...+...|++++|..+++..... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 11 12233344455678999999999887642 2222 2456778999999999999999999887543 11
Q ss_pred C---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 161 H---ATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS----GMRPD--VYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 161 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
. ....++..++..|...|++++|...++..... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 12346788899999999999999999887632 11111 34566777788889999999988877654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.51 E-value=5.1e-07 Score=67.01 Aligned_cols=98 Identities=11% Similarity=-0.002 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC--CC----hhhHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS--PS----VYVFN 133 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 133 (464)
..+..++..+...|++++|+..|++..... +.+...+..+...+...|++++|...++++.+..+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777788888888888888877664 445666777777777778888888877777665422 11 55666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+..++...|++++|.+.|+...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6667777777777777777776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-07 Score=81.80 Aligned_cols=149 Identities=7% Similarity=-0.043 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
....|..++..+...|++++|+..|++++.. .|+.. .+...|+.+++...+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-------------------~p~~~-------~~~~~~~~~~~~~~l~-- 229 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-------------------MGDDF-------MFQLYGKYQDMALAVK-- 229 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-------------------SCHHH-------HHTCCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------------------hccch-------hhhhcccHHHHHHHHH--
Confidence 4567888999999999999999999998842 23222 1122233333332221
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcc
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAV 165 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 165 (464)
..++..+..++.+.|++++|+..++++++..+. +..++..+..+|...|++++|...|++..+.. +.+..
T Consensus 230 --------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~ 299 (338)
T 2if4_A 230 --------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKA 299 (338)
T ss_dssp --------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------
T ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHH
Confidence 124555556666666666666666666655433 55566666666666666666666666655442 12333
Q ss_pred cHHHHHHH-HHhcCChhHHHHHHHHHhh
Q 047873 166 SFNTLING-HCKAKNLDEGFRLKSVMEG 192 (464)
Q Consensus 166 ~~~~l~~~-~~~~~~~~~a~~~~~~~~~ 192 (464)
.+..+... ....+..+.+..+|..+..
T Consensus 300 a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 300 IRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33333333 2233445555566665553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-06 Score=64.40 Aligned_cols=96 Identities=10% Similarity=-0.085 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP----ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
..+..+...+...|++++|++.|++..+.. |+ ...+..+...+...|++++|+..+++.++..+. +...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 778888888889999999999999888775 33 566777888888888888888888888876544 67777788
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..++...|++++|...|++....
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888888888888888887765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.49 E-value=7.1e-07 Score=67.35 Aligned_cols=109 Identities=5% Similarity=-0.119 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL-PGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...+...+..+...|++++|++.|++++.-....+... .....| +..+|..+..++.+.|++++|+..|++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-------a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-------AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-------CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-------hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45678888999999999999999999984321100000 000000 0137888888888888888888888887
Q ss_pred HhC-------CCCCChhcH----HHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 86 RKH-------YFRIPARGC----RCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 86 ~~~-------~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
.+. + |-+..+| .....++...|++++|+..|++.++.
T Consensus 84 L~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 84 LHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 765 4 2344556 66666777777777777777776653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-06 Score=66.44 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
..++..++..+...|++++|++.|++++... +..+..... .++..+...+...|++++|++.|++.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-------------KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-------------HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678888999999999999999999887321 110111111 57778888888999999999998886
Q ss_pred HhCCC----CC-ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 047873 86 RKHYF----RI-PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS-----PSVYVFNVLMHKLCKEGKIKDAQMVFDEF 155 (464)
Q Consensus 86 ~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (464)
..... ++ ....+..+...+...|++++|...+++.++.... .....+..+...+...|++++|.+.+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 54310 11 1334566666777777777777777766542110 01234455555566666666666666554
Q ss_pred h
Q 047873 156 G 156 (464)
Q Consensus 156 ~ 156 (464)
.
T Consensus 156 ~ 156 (164)
T 3ro3_A 156 L 156 (164)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.1e-06 Score=61.44 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh---hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC---hhhHHHH
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPA---RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS---VYVFNVL 135 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 135 (464)
+..++..+...|++++|+..|+.+.... |.+. .++..+..++...|++++|...++++++..+. + ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 4456677888889999999998887764 2233 46777888888888888888888888876644 3 5567777
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..++...|++++|...|+.+...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888888765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-07 Score=86.89 Aligned_cols=97 Identities=9% Similarity=-0.071 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIP--------------ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
..+..+...|.+.|++++|+..|++......... ..+|..+..++.+.|++++|+..++++++..+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 4566667777777777777777777665431111 23344444444444444444444444444333
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHhh
Q 047873 126 SPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
. +..++..+..+|...|++++|...|++..+
T Consensus 349 ~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 349 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 344444444444444444444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-05 Score=75.26 Aligned_cols=173 Identities=9% Similarity=-0.076 Sum_probs=129.6
Q ss_pred hCCC-hHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCC----------hhHHHHHHHHHH
Q 047873 19 AHKM-HSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGF----------LDDAIQCFRLLR 86 (464)
Q Consensus 19 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~----------~~~A~~~~~~~~ 86 (464)
+.|. .++|++.+.+++ ...|+. .+|+.-..++...|+ ++++++.++.+.
T Consensus 40 ~~~~~~eeal~~~~~~l-------------------~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l 100 (567)
T 1dce_A 40 QAGELDESVLELTSQIL-------------------GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100 (567)
T ss_dssp HTTCCSHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHH-------------------HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH
Confidence 3444 467788888888 456777 899988888888887 899999999998
Q ss_pred hCCCCCChhcHHHHHHHHHcCC--ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCCC
Q 047873 87 KHYFRIPARGCRCLIDRMMRTN--LPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG-KIKDAQMVFDEFGKRGLHAT 163 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~ 163 (464)
+.+ |-+..+|..-...+.+.+ +++++++.++++++..+. +..+|+.-..++...| .++++++.++++.+.+ +-+
T Consensus 101 ~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n 177 (567)
T 1dce_A 101 RVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSN 177 (567)
T ss_dssp HHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCC
T ss_pred HhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCC
Confidence 886 457778888888888888 669999999999998776 8888988888888888 8888999988888775 446
Q ss_pred cccHHHHHHHHHhc--------------CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047873 164 AVSFNTLINGHCKA--------------KNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR 214 (464)
Q Consensus 164 ~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (464)
...|+.....+.+. +.++++++.++...... +-+...|..+...+.+.++
T Consensus 178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 77787777766653 33566666666665543 3345556655555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-06 Score=63.55 Aligned_cols=87 Identities=8% Similarity=-0.119 Sum_probs=64.1
Q ss_pred hcCChhHHHHHHHHHHhCC--CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 047873 71 DLGFLDDAIQCFRLLRKHY--FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDA 148 (464)
Q Consensus 71 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (464)
..|++++|+..|++..+.+ -+.+..++..+..++...|++++|+..++++++..+. +..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3578888888888887763 2334567778888888888888888888888887665 677778888888888888888
Q ss_pred HHHHHHHhhC
Q 047873 149 QMVFDEFGKR 158 (464)
Q Consensus 149 ~~~~~~~~~~ 158 (464)
...+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.8e-06 Score=64.29 Aligned_cols=132 Identities=12% Similarity=0.080 Sum_probs=77.3
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHHHCC----CCC-CH
Q 047873 276 ITYTILLDGFCKEGDLESALDIRKEMIKRGIE-LD----NVAFTALISGFCRGGKVVEAERMLREMLKVG----LKP-DD 345 (464)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 345 (464)
.++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.. .++ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566677777778888888877776653111 01 1356666667777777777777777665421 000 13
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 346 ATYTMVIDCFCKNGDTKTGFRLLKEMRSD----GHL-PAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 346 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
..+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34556666666777777777766665542 110 112345555666666666666666666654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-06 Score=79.82 Aligned_cols=125 Identities=12% Similarity=-0.020 Sum_probs=98.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+..+...+.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|+..++++++..+. +..++..+..+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34445556778999999999999998875 446788999999999999999999999999987654 7888999999999
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHH--HHhcCChhHHHHHHH
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLING--HCKAKNLDEGFRLKS 188 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 188 (464)
..|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999988763 2345566666655 778899999999988
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.3e-05 Score=68.84 Aligned_cols=186 Identities=8% Similarity=-0.034 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCH----------------HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CH----HHH
Q 047873 255 DMKEARKIVDEMCTNGLNPDK----------------ITYTILLDGFCKEGDLESALDIRKEMIKRGIEL-DN----VAF 313 (464)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~ 313 (464)
++++|++.|..+.+....... ..+..++..|...|++++|.+.+..+.+..... +. .+.
T Consensus 19 ~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 98 (434)
T 4b4t_Q 19 QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLK 98 (434)
T ss_dssp CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 347999999999875432211 236778999999999999999998876532111 11 233
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CC---CcCHHHH
Q 047873 314 TALISGFCRGGKVVEAERMLREMLKV----GLKP-DDATYTMVIDCFCKNGDTKTGFRLLKEMRSD--GH---LPAVETY 383 (464)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~~~~~~~ 383 (464)
+.+...+...|+++.|..+++..... +..+ -..++..+...|...|++++|..+++++... +. ......+
T Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 34444556678999999999887642 2222 2457788999999999999999999988654 11 1235678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 384 NALMNGLCKHGQLKNANMLLDTMLDL--GVVPD----DITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 384 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...+.+
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88999999999999999999887631 11112 24566667777889999998877654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.7e-06 Score=63.41 Aligned_cols=98 Identities=9% Similarity=-0.116 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC--------C---------CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKH--------Y---------FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
..+...+..+.+.|++++|+..|.+.... . .+.....+..+..++.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 56677888899999999999999988765 1 011234566666667777777777777777776
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 123 YGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
..+. +...|..+..++...|++++|...|+.....
T Consensus 92 ~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6543 5666666777777777777777777766655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.26 E-value=6.4e-06 Score=73.38 Aligned_cols=98 Identities=8% Similarity=-0.076 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC---------------CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHY---------------FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
..+..+...+.+.|++++|++.|++..+.. .+....++..+..++.+.|++++|+..++++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346677888888999999999988877620 01123444555555555555555555555555543
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 125 YSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
+. +..++..+..+|...|++++|.+.|++..+.
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 32 4445555555555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.5e-06 Score=60.38 Aligned_cols=91 Identities=9% Similarity=-0.017 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
++..+|..++..+...|++++|++.|++++. ..|+. .++..+..++.+.|++++|++.|+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 62 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLIT-------------------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3567788888888888888888888888873 23433 777788888888888888888888
Q ss_pred HHHhCCCCCC------hhcHHHHHHHHHcCCChhhHHH
Q 047873 84 LLRKHYFRIP------ARGCRCLIDRMMRTNLPTVTLG 115 (464)
Q Consensus 84 ~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~ 115 (464)
+..... +.+ ...+..+..++...|+.+.|+.
T Consensus 63 ~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 63 QGLRYT-STAEHVAIRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHTSC-SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHhC-CCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence 877764 222 3344444555555555544443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.19 E-value=7.2e-06 Score=56.19 Aligned_cols=79 Identities=13% Similarity=0.028 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP-GLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
+...|..+...+...|++++|++.|++++. ..|+ ..++..+...+.+.|++++|++.|++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE-------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh-------------------cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345566666666666666666666666653 1222 25566666666666666666666666
Q ss_pred HHhCCCCCChhcHHHHHHHH
Q 047873 85 LRKHYFRIPARGCRCLIDRM 104 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~ 104 (464)
..... |.+...+..+...+
T Consensus 69 a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 69 ALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHH
Confidence 65553 22344444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0001 Score=69.52 Aligned_cols=176 Identities=9% Similarity=-0.057 Sum_probs=142.4
Q ss_pred HhcC-ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC----------hhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 70 VDLG-FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNL----------PTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 70 ~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
.+.| ..++|++.++.+.... |-...+|+.-..++...|+ ++++++.++.+++..++ +..+|+.-..+
T Consensus 39 ~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~ 116 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 116 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3344 4568899999999886 4466778777777777777 89999999999998876 89999999999
Q ss_pred HHhcC--ChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---
Q 047873 139 LCKEG--KIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK-NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE--- 212 (464)
Q Consensus 139 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 212 (464)
+.+.+ +++++++.++++.+.+ +.+..+|+.....+.+.| .++++++.++++++.. +-+..+|+.....+.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccc
Confidence 99999 7799999999999886 457888988888888888 8999999999998875 34788888877776663
Q ss_pred -----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047873 213 -----------NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 213 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (464)
+.++++++.+++.....+. +...|..+-..+.+.++.
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 4578999999998877533 677888877777776664
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-05 Score=59.82 Aligned_cols=97 Identities=12% Similarity=-0.044 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------Ch-----hcHHHHHHHHHcCCChhhHHHHHHHHHhc-----
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRI------PA-----RGCRCLIDRMMRTNLPTVTLGFYLEILDY----- 123 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 123 (464)
..+......+.+.|++++|+..|++..+..+.. +. .+|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345667778889999999999999988764221 11 26677777777777777777777777765
Q ss_pred --CCCCChhhH----HHHHHHHHhcCChhhHHHHHHHHhh
Q 047873 124 --GYSPSVYVF----NVLMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 124 --~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
.+. +...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 433 45555 6666666677777777776666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.14 E-value=7.4e-06 Score=72.11 Aligned_cols=148 Identities=6% Similarity=-0.167 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..+...+.+.|++++|+..|++..... |+.. .+...++..++...+ ....|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 345556666667777777777777665542 1111 111222233322211 113778899999
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCChhHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALING-LCKENRLDDA 218 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 218 (464)
.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..+ ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864 4467889999999999999999999999988653 2244455555555 3345667888
Q ss_pred HHHHHHHHHC
Q 047873 219 ELLLHEMCER 228 (464)
Q Consensus 219 ~~~~~~~~~~ 228 (464)
.+.|..+...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8999988765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.6e-06 Score=75.66 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=92.1
Q ss_pred HHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C
Q 047873 16 FLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH-----Y 89 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 89 (464)
.+..+|++++|+.++++++.... .++- ..+|+. .+++.|+.+|...|++++|+.++++.... |
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~---------~~lg--~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQE---------PVFA--DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHT---------TTBC--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH---------HhcC--CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 35679999999999999984221 1111 234445 88999999999999999999999886532 2
Q ss_pred C--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHh-----cCCC-C-ChhhHHHHHHHHHhcCChhhHHHHHHHHhh
Q 047873 90 F--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILD-----YGYS-P-SVYVFNVLMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 90 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
. |....+++.+...|...|++++|..+++++++ .|.. | ...+.+.+..++.+.+.+++|+.+|..+.+
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11245678888888899999999888888764 3433 1 123344566666677778888887777754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.1e-05 Score=58.35 Aligned_cols=69 Identities=12% Similarity=-0.029 Sum_probs=55.1
Q ss_pred CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 54 GTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 54 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
...|+. .++..+...|...|++++|+..|++....+ +.+...+..+..++...|++++|...|+++++.
T Consensus 13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555 888888888888999999999998888775 445677888888888888888888888887764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=3e-06 Score=60.77 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC------hhhHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS------VYVFN 133 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 133 (464)
..+..+...+...|++++|++.|++..... |.+...+..+..++...|++++|+..++++++..+. + ...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 82 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHH
Confidence 567778888888888888888888888775 446777888888888888888888888888876543 3 44555
Q ss_pred HHHHHHHhcCChhhHHHHHHH
Q 047873 134 VLMHKLCKEGKIKDAQMVFDE 154 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~ 154 (464)
.+..++...|+++.|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 566666666666665554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.7e-05 Score=55.61 Aligned_cols=66 Identities=20% Similarity=0.068 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
|.++.+|..++.+|...|++++|++.|++++. ..|+. .+|..+..+|...|++++|++.|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVE-------------------TDPDYVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55677788888888888888888888888773 33444 67777788888888888888887
Q ss_pred HHHHhC
Q 047873 83 RLLRKH 88 (464)
Q Consensus 83 ~~~~~~ 88 (464)
++..+.
T Consensus 65 ~~al~l 70 (100)
T 3ma5_A 65 AQGIEV 70 (100)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00011 Score=54.88 Aligned_cols=109 Identities=12% Similarity=-0.018 Sum_probs=54.4
Q ss_pred ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhhHH
Q 047873 74 FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK----EGKIKDAQ 149 (464)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 149 (464)
++++|++.|++..+.+ .+. +. +...+...+..++|..+|++..+.| ++..+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666665554 112 22 4444444455555666665555543 44455555555554 45555555
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhC
Q 047873 150 MVFDEFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 193 (464)
+.|++..+.| +...+..+...|.. .+++++|..+|++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555554443 33444444444444 44455555555544443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.3e-05 Score=71.01 Aligned_cols=125 Identities=11% Similarity=0.054 Sum_probs=90.9
Q ss_pred HHHhCCChHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHC-----CC-CC-CHhhHH
Q 047873 284 GFCKEGDLESALDIRKEMIKR-----GI-EL-DNVAFTALISGFCRGGKVVEAERMLREMLKV-----GL-KP-DDATYT 349 (464)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 349 (464)
.+...|++++|+.++++.++. |. .| ...+++.+..+|...|++++|..++++.+.. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455788999999988887754 11 11 2457888888999999999999998887642 21 12 245688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-----CC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 350 MVIDCFCKNGDTKTGFRLLKEMRSD-----GH-LP-AVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 350 ~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.|...|...|++++|..++++..+- |. .| ...+.+.+..++...+++++|..+++++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988887652 21 12 234456667778888889999999988875
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.01 E-value=5.2e-05 Score=51.74 Aligned_cols=80 Identities=15% Similarity=0.056 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 667777888888888888888888877764 345667777777888888888888888887776543 556666665555
Q ss_pred Hh
Q 047873 140 CK 141 (464)
Q Consensus 140 ~~ 141 (464)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00045 Score=51.52 Aligned_cols=110 Identities=11% Similarity=-0.013 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHH
Q 047873 290 DLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK----NGDTKTGF 365 (464)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 365 (464)
++++|...|++..+.+.. ... +...|...+.+++|..+|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 345555555555555421 221 4444444455555555555555543 44455555555555 55566666
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 047873 366 RLLKEMRSDGHLPAVETYNALMNGLCK----HGQLKNANMLLDTMLDLG 410 (464)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 410 (464)
+.|++..+.+ ++..+..+...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655542 44455555555555 556666666666655543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-05 Score=59.91 Aligned_cols=87 Identities=13% Similarity=0.012 Sum_probs=68.7
Q ss_pred HhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCh----------hHHHHHHHHHH
Q 047873 18 VAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFL----------DDAIQCFRLLR 86 (464)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~----------~~A~~~~~~~~ 86 (464)
.+-+.+++|++.+++++ ...|+. ..|..+..++...+++ ++|+..|++..
T Consensus 13 ~r~~~feeA~~~~~~Ai-------------------~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL 73 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTY-------------------KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL 73 (158)
T ss_dssp HHHHHHHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH-------------------HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH
Confidence 34567899999999988 345655 9999999999988875 48889998888
Q ss_pred hCCCCCChhcHHHHHHHHHcCC-----------ChhhHHHHHHHHHhcC
Q 047873 87 KHYFRIPARGCRCLIDRMMRTN-----------LPTVTLGFYLEILDYG 124 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~ 124 (464)
+.+ |-...+|..+..+|...| ++++|++.|+++++..
T Consensus 74 ~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 74 LID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 886 446778888888887764 7888888888888755
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=2.9e-05 Score=58.42 Aligned_cols=98 Identities=7% Similarity=-0.066 Sum_probs=73.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChh----------hHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPT----------VTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.+.+.+++|++.++...+.. |.+...|..+..++...++++ +|+..|++.++..+. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 45678889999999988886 557888888888888877654 888888888887765 777888888888
Q ss_pred HhcC-----------ChhhHHHHHHHHhhCCCCCCcccHHHHH
Q 047873 140 CKEG-----------KIKDAQMVFDEFGKRGLHATAVSFNTLI 171 (464)
Q Consensus 140 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (464)
...| ++++|.+.|++..+. .|+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 7764 677777777777765 45554444333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0001 Score=53.08 Aligned_cols=79 Identities=10% Similarity=-0.038 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHh
Q 047873 77 DAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFG 156 (464)
Q Consensus 77 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (464)
+|++.|++..+.. +.+...+..+...+...|++++|+..++++++..+. +...+..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666655554 334555666666666666666666666666655443 45555666666666666666666666554
Q ss_pred h
Q 047873 157 K 157 (464)
Q Consensus 157 ~ 157 (464)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.81 E-value=6.1e-05 Score=52.66 Aligned_cols=65 Identities=12% Similarity=-0.042 Sum_probs=54.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhc
Q 047873 58 PGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDY 123 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 123 (464)
+..++..+...|.+.|++++|++.|++..+.+ |.+..+|..+..++...|++++|...|++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33788888899999999999999999988876 445678888888899999999999988887754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00055 Score=46.72 Aligned_cols=68 Identities=13% Similarity=-0.025 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHH
Q 047873 3 FRLTLHAYSTMVHFLVAHKM---HSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDA 78 (464)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 78 (464)
.|.++..|..+..++...++ .++|..++++++ ...|+. .++..+...+.+.|++++|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL-------------------~~dp~~~rA~~~lg~~~~~~g~y~~A 62 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL-------------------QLEPYNEAALSLIANDHFISFRFQEA 62 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-------------------HHCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 46778888888888865544 688888888888 345555 8888888888888888888
Q ss_pred HHHHHHHHhCC
Q 047873 79 IQCFRLLRKHY 89 (464)
Q Consensus 79 ~~~~~~~~~~~ 89 (464)
+..|+.+...+
T Consensus 63 i~~w~~~l~~~ 73 (93)
T 3bee_A 63 IDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhhC
Confidence 88888888775
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00043 Score=60.02 Aligned_cols=72 Identities=10% Similarity=-0.051 Sum_probs=39.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 047873 128 SVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYS 203 (464)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (464)
++.++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 45555555555555566666666666665553 45445555555555666666666666655544 34444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.54 E-value=5.2e-05 Score=52.85 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=39.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-h-hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-L-VLDALMIVYVDLGFLDDAIQCFRLLRKHY 89 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 89 (464)
.+..+...|++++|++.|++++. ..|+. . ++..+..+|...|++++|++.|++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~-------------------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ-------------------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-------------------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-------------------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44566677777777777777763 23444 5 67777777777777777777777776664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.51 E-value=1e-07 Score=83.86 Aligned_cols=90 Identities=7% Similarity=-0.074 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC----------CCCcCHHHHHHHHHHHHhcCCHHHHHH------------HHHH
Q 047873 348 YTMVIDCFCKNGDTKTGFRLLKEMRSD----------GHLPAVETYNALMNGLCKHGQLKNANM------------LLDT 405 (464)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~a~~------------~~~~ 405 (464)
.+-|+.++...=|...+.++|++.-.. ...-+...-.++-..|....+++.-.. +.++
T Consensus 368 L~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~r 447 (624)
T 3lvg_A 368 LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQR 447 (624)
T ss_dssp SHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHH
T ss_pred HHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHH
Confidence 345555555555555555555442110 011123333455566667767665433 2333
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 406 MLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 406 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
+.+ .+-......-...|.+.++|+++..+.++
T Consensus 448 LEk---HeL~eFRrIAA~LYkkn~rw~qsi~l~Kk 479 (624)
T 3lvg_A 448 LEK---HELIEFRRIAAYLFKGNNRWKQSVELCKK 479 (624)
T ss_dssp HHT---CSSHHHHHHHHHHHHTTCHHHHHSSCSST
T ss_pred Hhh---CchHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 332 23444455555667788888888777665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0024 Score=46.75 Aligned_cols=104 Identities=8% Similarity=-0.011 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHH------HH
Q 047873 4 RLTLHAYSTMVHFLVAHKMH------SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIV------YV 70 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~------~~ 70 (464)
|.|.++|-..+..+...|+. ++.++.|++++. .++|+. ..|...+.. +.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia------------------~~Pp~k~~~wrrYI~LWIrYA~~~ 71 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE------------------ALPPDKYGQNESFARIQVRFAELK 71 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH------------------HSCGGGGTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH------------------cCCccccccHHHHHHHHHHHHHHH
Confidence 67899999999999999999 888888888875 334433 222222221 23
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCC
Q 047873 71 DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYS 126 (464)
Q Consensus 71 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 126 (464)
..++.++|.++|+.+...+ .--...|......-.+.|+...|..++.+.+..++.
T Consensus 72 ei~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4477888888888776542 212455555555566777888888888777776655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0015 Score=56.73 Aligned_cols=144 Identities=14% Similarity=0.026 Sum_probs=79.4
Q ss_pred CCCCHHhHHHHHHHHH--hCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCh-HHHH---HHHHHHH
Q 047873 271 LNPDKITYTILLDGFC--KEG---DLESALDIRKEMIKRGIELDNVAFTALISGFCR----GGKV-VEAE---RMLREML 337 (464)
Q Consensus 271 ~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~-~~a~---~~~~~~~ 337 (464)
.+.+...|...+++.. ..+ +..+|..+|++.++..+. ....+..+..++.. .+.. .... ..++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3456667777766543 222 346788888888887543 34455544444431 1011 1111 1111111
Q ss_pred H-CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 047873 338 K-VGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDI 416 (464)
Q Consensus 338 ~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 416 (464)
. ...+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1 1113455666666665666677777777777777653 56666666666677777777777777776653 45555
Q ss_pred HHH
Q 047873 417 TYN 419 (464)
Q Consensus 417 ~~~ 419 (464)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00027 Score=63.87 Aligned_cols=93 Identities=14% Similarity=-0.006 Sum_probs=67.6
Q ss_pred hCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-C
Q 047873 19 AHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH-----YF-R 91 (464)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~ 91 (464)
..|++++|+++|++++.... .++- ..+|+. .+++.|+.+|...|++++|+.++++.... |. .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~---------~~lg--~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS---------SVFE--DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT---------TTBC--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhh---------CccC--hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 46889999999999884211 1110 234444 88899999999999999999999887542 21 1
Q ss_pred C-ChhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 92 I-PARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 92 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
| ...+++.+...|...|++++|..+++++++
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1 235577888888888888888888887764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00032 Score=63.42 Aligned_cols=76 Identities=11% Similarity=-0.033 Sum_probs=63.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHH
Q 047873 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 79 (464)
|+.|....+++.|+.+|...|++++|+.++++++. ++..++- ..+|+. .+++.|+..|...|++++|+
T Consensus 334 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~---------i~~~~lG--~~Hp~~a~~l~nLa~~~~~qg~~~eA~ 402 (433)
T 3qww_A 334 DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK---------PYSKHYP--VYSLNVASMWLKLGRLYMGLENKAAGE 402 (433)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HHHHHSC--SSCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------HHHHHcC--CCChHHHHHHHHHHHHHHhccCHHHHH
Confidence 56677889999999999999999999999999983 3343332 445666 89999999999999999999
Q ss_pred HHHHHHHh
Q 047873 80 QCFRLLRK 87 (464)
Q Consensus 80 ~~~~~~~~ 87 (464)
.++++...
T Consensus 403 ~~~~~Al~ 410 (433)
T 3qww_A 403 KALKKAIA 410 (433)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0017 Score=58.83 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=71.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH--- 88 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 88 (464)
.+..+...|++++|++++++++...... + ...+|+. .+++.++.+|...|++++|+.++++....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~---------l--g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSER---------L--PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCC---------C--CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCc---------C--CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Confidence 3455668999999999999998532210 0 0123333 78899999999999999999999887532
Q ss_pred --CC--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 89 --YF--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 89 --~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
|. |....+++.+...|...|++++|..+++++++
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 21 11235577888888888888888888887664
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0029 Score=43.66 Aligned_cols=66 Identities=9% Similarity=0.057 Sum_probs=53.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChh-cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR-GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF 132 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (464)
.+..+.+.|++++|++.|+++.+.. +.+.. .+..+..++...|++++|...|+++++..+. +..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHH
Confidence 4566788899999999999988875 44566 8888889999999999999999999887654 44433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0036 Score=42.61 Aligned_cols=67 Identities=9% Similarity=-0.049 Sum_probs=43.3
Q ss_pred ChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 58 PGLVLDALMIVYVDLGF---LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 58 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
+...+..+..++...++ .++|..+|++....+ |-+..+...+...+.+.|++++|+..|+++++..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33566666666543333 577777777777665 44566666667777777777777777777776553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00096 Score=60.38 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=62.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHH
Q 047873 1 PHFRLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAI 79 (464)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 79 (464)
|..+....+++.|+.+|...|++++|++++++++. ++..++- ..+|+. .+++.|...|...|++++|+
T Consensus 323 ~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~---------i~~~~lg--~~Hp~~a~~l~nLa~~~~~~g~~~eA~ 391 (429)
T 3qwp_A 323 DINIYQLKVLDCAMDACINLGLLEEALFYGTRTME---------PYRIFFP--GSHPVRGVQVMKVGKLQLHQGMFPQAM 391 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------HHHHHSC--SSCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH---------hHHHHcC--CCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45667788999999999999999999999999983 3343332 455666 88999999999999999999
Q ss_pred HHHHHHHh
Q 047873 80 QCFRLLRK 87 (464)
Q Consensus 80 ~~~~~~~~ 87 (464)
.++++...
T Consensus 392 ~~~~~Al~ 399 (429)
T 3qwp_A 392 KNLRLAFD 399 (429)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.014 Score=40.67 Aligned_cols=74 Identities=16% Similarity=0.034 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHL-PGLVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
+-+...+..|+..+...|++..|...|+.++....... ...+ ...++..+..+|.+.|+++.|+..+
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~------------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~ 69 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE------------ISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC------------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC------------CCcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45778899999999999999999999999985321000 0112 2378888999999999999999999
Q ss_pred HHHHhCC
Q 047873 83 RLLRKHY 89 (464)
Q Consensus 83 ~~~~~~~ 89 (464)
+++....
T Consensus 70 ~~al~l~ 76 (104)
T 2v5f_A 70 KKLLELD 76 (104)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9988764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.02 Score=40.99 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=71.1
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCh
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPA 94 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~ 94 (464)
+.-.|..++..++..+..+++...++..+.=.++.+....--..++..+... ...+|+....+..+-.+- .+.
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n-----~~s 91 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN-----TLN 91 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-----CCC
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc-----chH
Confidence 4458999999999999887655555555555555441111000122222221 134455555554443321 123
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
+.....+..+...|+-+...+++..++.. .+|++.....+..+|.+.|+..+|.+++.+..++|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444555555555555555555554332 234555555566666666666666666665555553
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00022 Score=63.25 Aligned_cols=384 Identities=11% Similarity=0.053 Sum_probs=213.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
.+..|+.|+.++...|...+|++-|-++ .|...|..++.+..+.|++++-++.+.-.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----------------------~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----------------------DDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----------------------SCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----------------------CChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4567888999999999999998876443 23356677778888888888888887754
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC-------
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR------- 158 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 158 (464)
.+.. -++..=..++.+|++.++..+-.+.+ ..|+..-...+..-|...|.++.|.-+|..+..-
T Consensus 110 Rk~~--ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstL 180 (624)
T 3lvg_A 110 RKKA--RESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTL 180 (624)
T ss_dssp STTC--CSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSS
T ss_pred HHHh--cccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHH
Confidence 4432 23444567778888888776544332 1256656667777777777777777766654211
Q ss_pred -------------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 159 -------------GLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEM 225 (464)
Q Consensus 159 -------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 225 (464)
.-..+..||..+-.+|...+.+.-|.-.--.++-. ++ ....++..|-..|.+++.+.+++.-
T Consensus 181 V~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 181 VHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 01236678888888888888877766554444321 11 1233566677888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC-CCC------CCHHhHHHHHHHHHhCCChHHHHHHH
Q 047873 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLN------PDKITYTILLDGFCKEGDLESALDIR 298 (464)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (464)
... -......|+-|.-.|++-.- ++..+.++....+ +++ .....|..++-.|.+-.+++.|....
T Consensus 256 lgl-ErAHmGmFTELaILYsKY~P-------eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltM 327 (624)
T 3lvg_A 256 LGL-ERAHMGMFTELAILYSKFKP-------QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 327 (624)
T ss_dssp TTS-TTCCHHHHHHHHHHHHSSCT-------THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTT
T ss_pred hCC-CchhHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHH
Confidence 633 13456677777777776532 2333333322211 111 12234666666666666666554321
Q ss_pred -------------HHHHHcCCCCCHHHHHH---------------HHHHHhccCChHHHHHHHHHHHHC----------C
Q 047873 299 -------------KEMIKRGIELDNVAFTA---------------LISGFCRGGKVVEAERMLREMLKV----------G 340 (464)
Q Consensus 299 -------------~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~----------~ 340 (464)
.++..+ ..+...|-. |+.++...=+..++.+++++.-.. .
T Consensus 328 i~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq 405 (624)
T 3lvg_A 328 MNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ 405 (624)
T ss_dssp TSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCC
T ss_pred HhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHH
Confidence 111111 123344443 444444344455555555442210 0
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHH------------HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH---
Q 047873 341 LKPDDATYTMVIDCFCKNGDTKTGFR------------LLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDT--- 405 (464)
Q Consensus 341 ~~~~~~~~~~ll~~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--- 405 (464)
-..+..+-.++-..|....|++.-.. +-+++.+. +-...-..-...|.+.++|++++.+.++
T Consensus 406 ~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~KkDkl 482 (624)
T 3lvg_A 406 NHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKKDSL 482 (624)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSSTTCC
T ss_pred HhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHhccc
Confidence 01122333445556666666554332 12222221 1222223444556677777777664422
Q ss_pred ---HHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047873 406 ---MLD-LGVVPDDITYNILLEGHCKHGNPEDFDKLQS 439 (464)
Q Consensus 406 ---~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 439 (464)
+.+ ....-+...-.-|++-+...|+.+-....+-
T Consensus 483 ykDAietAa~S~~~elaeeLL~yFv~~g~~EcF~a~Ly 520 (624)
T 3lvg_A 483 YKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLF 520 (624)
T ss_dssp TTGGGTTTTTCCCTTHHHHHHHHHHHHCSTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 221 1223455555666666666666665444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0082 Score=44.63 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHH
Q 047873 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNG---DTKTGFRLLKEMRSDGHLP--AVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 399 (464)
....+.+-|.+....+ .++..+...+..++++++ +.++++.++++..+.. .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666655 367777777777777777 5667888888777753 23 234444566667788888888
Q ss_pred HHHHHHHHhCCCCCCH
Q 047873 400 NMLLDTMLDLGVVPDD 415 (464)
Q Consensus 400 ~~~~~~~~~~~~~p~~ 415 (464)
.+.++.+++. .|+.
T Consensus 91 ~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHhc--CCCC
Confidence 8888887763 5543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.033 Score=46.36 Aligned_cols=107 Identities=10% Similarity=0.128 Sum_probs=79.1
Q ss_pred HHHHHHHHHH-HHh--cCCcccccCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhC-----CChHHHHHHHHHHH
Q 047873 234 DVIFTTLIDG-HCK--NGRIDMAGDMKEARKIVDEMCTNGLNPD---KITYTILLDGFCKE-----GDLESALDIRKEMI 302 (464)
Q Consensus 234 ~~~~~~l~~~-~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~ 302 (464)
...|..++.+ +.. .+.+...+....|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++.+
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 4445555443 233 35555556677888888888885 454 56788888888884 89999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHHHHCCCC
Q 047873 303 KRGIELDNVAFTALISGFCRG-GKVVEAERMLREMLKVGLK 342 (464)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~ 342 (464)
+.++.-+..++......++.. |+.+.+...+++.+.....
T Consensus 232 ~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 232 RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 886543477777888888874 8999999999999987544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.1 Score=39.85 Aligned_cols=131 Identities=13% Similarity=0.152 Sum_probs=94.4
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH
Q 047873 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT 363 (464)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 363 (464)
...+.|+++.|.++.+.+ -+...|..+.......|+++-|...|.+... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345789999999997765 2789999999999999999999999988642 4455556666788877
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 047873 364 GFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGL 443 (464)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 443 (464)
-.++-+.....| -++.....+.-.|+++++.+++.+.- --|... ......|-.+.|.+++++.|+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~---r~~eA~------~~A~t~g~~~~a~~~~~~~~~ 143 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG---SLPLAY------AVAKANGDEAAASAFLEQAEV 143 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT---CHHHHH------HHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC---ChHHHH------HHHHHcCcHHHHHHHHHHhCC
Confidence 776665555543 14566677788999999999996642 222111 112246777889999888764
Q ss_pred C
Q 047873 444 V 444 (464)
Q Consensus 444 ~ 444 (464)
.
T Consensus 144 ~ 144 (177)
T 3mkq_B 144 D 144 (177)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.089 Score=52.28 Aligned_cols=131 Identities=12% Similarity=0.082 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 63 DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
..++..+.+.|.+++|+++.+. . ..-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 6677778888999888877631 1 11133445678999998876432 3778899999999999
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLL 222 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 222 (464)
++++.|.+.|..+.. |..+...+...++.+...++.+.....|. ++....+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 999999999987642 45566666667777776666666555431 233444566677777777777
Q ss_pred HHHH
Q 047873 223 HEMC 226 (464)
Q Consensus 223 ~~~~ 226 (464)
.++.
T Consensus 760 ~~~~ 763 (814)
T 3mkq_A 760 IKSQ 763 (814)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.024 Score=39.43 Aligned_cols=64 Identities=8% Similarity=-0.180 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHY------FRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
...++..+.+.|+++.|..+|+...+.. .......+..+..++.+.|+++.|+..++++++..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 3456666666677777777776655431 012334455566666666666666666666665443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.029 Score=46.74 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=63.5
Q ss_pred CCCCC--h-hhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC-CChhhHHHHHHHHHhcC
Q 047873 54 GTHLP--G-LVLDALMIVYVDL-----GFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT-NLPTVTLGFYLEILDYG 124 (464)
Q Consensus 54 ~~~~~--~-~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 124 (464)
.+.|+ . .+|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+++.+.+++++...
T Consensus 191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 55677 3 7899999999884 89999999999998886322467778888888874 88999999999999877
Q ss_pred CC--CChhhHHHHH
Q 047873 125 YS--PSVYVFNVLM 136 (464)
Q Consensus 125 ~~--~~~~~~~~l~ 136 (464)
+. |+....+.+.
T Consensus 271 p~~~P~~~lan~~~ 284 (301)
T 3u64_A 271 PESVPHNKLLVILS 284 (301)
T ss_dssp GGGCSSCHHHHHHH
T ss_pred CCCCCChhHHHHHH
Confidence 66 5554444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.14 Score=50.91 Aligned_cols=105 Identities=13% Similarity=0.059 Sum_probs=73.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
+......|++++|.++.+.+ .+...|..+...+.+.++++.|...|.++.. +..+...+...|+.
T Consensus 659 f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~ 723 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNK 723 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCH
T ss_pred eehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCH
Confidence 44567789999999987542 3567899999999999999999999998742 33455556667777
Q ss_pred hhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 047873 146 KDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVME 191 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 191 (464)
+...++.+.....| -++....+|.+.|++++|.+++..+.
T Consensus 724 ~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 724 EGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 76666655555443 23444455556666666666665543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.03 Score=41.61 Aligned_cols=83 Identities=10% Similarity=-0.092 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC---ChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhhHHH
Q 047873 75 LDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN---LPTVTLGFYLEILDYG-YSPSVYVFNVLMHKLCKEGKIKDAQM 150 (464)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (464)
...+.+.|.+....+ +++..+...+..++++++ +.++++.+++.+.+.. +..+...+-.+.-++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555554 356666666666777766 4447777777777654 21123344445556677777777777
Q ss_pred HHHHHhhC
Q 047873 151 VFDEFGKR 158 (464)
Q Consensus 151 ~~~~~~~~ 158 (464)
.++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.1 Score=38.36 Aligned_cols=97 Identities=7% Similarity=0.020 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCh-hcHHHHHHH------HHcCCChhhHHHHHHHHHhcCCC
Q 047873 60 LVLDALMIVYVDLGFL------DDAIQCFRLLRKHYFRIPA-RGCRCLIDR------MMRTNLPTVTLGFYLEILDYGYS 126 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~~~ 126 (464)
.+|-..+...-+.|+. ++.+++|++....- ||+. ..|...+.. +...++.++|.++|+.+++..-.
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKk 92 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKK 92 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHH
Confidence 6777677767666777 77777777776642 3332 111111111 11234555555555555443221
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 127 PSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
-...|....+.-.+.|++..|.+++......
T Consensus 93 -FAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 93 -FAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp -BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 2444444444444555555555555554444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.34 Score=37.00 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=21.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHH
Q 047873 70 VDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLE 119 (464)
Q Consensus 70 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 119 (464)
.++|+++.|.++.+.+ .+...|..+.......|+++-|...|.+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445555555554432 1334455555555555555555544443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.07 Score=38.11 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHH
Q 047873 327 VEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKT---GFRLLKEMRSDGHLP--AVETYNALMNGLCKHGQLKNANM 401 (464)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 401 (464)
..+..-|.+....| .++..+--.+..++.+.+.... ++.+++.+.+.+ .| .-...-.+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33334444333333 2444444444555555444333 445555444432 11 11122233344455555555555
Q ss_pred HHHHHHh
Q 047873 402 LLDTMLD 408 (464)
Q Consensus 402 ~~~~~~~ 408 (464)
.++.+++
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.17 E-value=2.8 Score=41.54 Aligned_cols=266 Identities=13% Similarity=-0.027 Sum_probs=145.0
Q ss_pred HHHhcCChhHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
Q 047873 173 GHCKAKNLDEGFRLKSVMEGSG--MRPDVYTYSALINGLCKENRLDDAELLLHEMCERGL-------TPNDVIFTTLIDG 243 (464)
Q Consensus 173 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 243 (464)
+.+..|+.++++.+++.....+ -.+....-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556788888888777665421 122233333444455566666678887777654311 0112222333334
Q ss_pred HHhcCCcccccCHHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 047873 244 HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDK--ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFC 321 (464)
Q Consensus 244 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (464)
+.-.|.-+ +++...+..+....- +.. ..-..+...+...|+.+....++..+.+.. .-+..-...+.-++.
T Consensus 463 la~~GS~~-----eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll 535 (963)
T 4ady_A 463 LAAMGSAN-----IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALI 535 (963)
T ss_dssp HHSTTCCC-----HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred HHhcCCCC-----HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhh
Confidence 44344433 577777777766421 111 122234445667788888888888777642 112222333444455
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047873 322 RGGKVVEAERMLREMLKVGLKPDDATY--TMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNA 399 (464)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 399 (464)
-.|+.+.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 7899999999988887642 2222222 23445677888887777798888875 222344334444455557777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhcCCCCchh
Q 047873 400 NMLLDTMLDLGVVPDDITYNILLEGHCKHGNP-EDFDKLQSEKGLVSDYA 448 (464)
Q Consensus 400 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~p~~~ 448 (464)
.++++.+.+.+ .|....-..+.-+....|+. .++...+..+--.++..
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHH
Confidence 77777666532 33333333333333344444 44666666543344433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.08 Score=37.80 Aligned_cols=84 Identities=11% Similarity=-0.087 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhh---HHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhhHH
Q 047873 74 FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTV---TLGFYLEILDYGYS-PSVYVFNVLMHKLCKEGKIKDAQ 149 (464)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 149 (464)
....+.+-|......+ +++..+-..+..++.++++... ++.+++.+.+.+.+ ......-.|.-++.+.|+++.|.
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444555444434 3555565566666666666555 66666666654311 12222334455566666666666
Q ss_pred HHHHHHhhC
Q 047873 150 MVFDEFGKR 158 (464)
Q Consensus 150 ~~~~~~~~~ 158 (464)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.61 Score=41.44 Aligned_cols=117 Identities=16% Similarity=0.078 Sum_probs=60.6
Q ss_pred CHHHHHHHHHH---HHhCCChHHHHHHHHHHHHhc-C-CCCh----------HHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 6 TLHAYSTMVHF---LVAHKMHSQARDLLHLIVSKK-G-MGSS----------ASLFASILETRGTHLPGLVLDALMIVYV 70 (464)
Q Consensus 6 ~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 70 (464)
|+..+..++.. ....|+.++|.+.+++++.-- | +-+. +.-+..... .+...++..+.
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~--------~a~~~~~~~~l 182 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKV--------LAHTAKAEAEI 182 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 34444444432 234689999999999887421 1 0000 000000000 23334455555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHh-----cCCCCChhh
Q 047873 71 DLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILD-----YGYSPSVYV 131 (464)
Q Consensus 71 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 131 (464)
..|++++|+..++.+...+ |.+...+..++.++...|+..+|++.|+.+.+ .|..|.+.+
T Consensus 183 ~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6666666666666655554 44555666666666666666666666665432 355555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.15 E-value=1.1 Score=32.26 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=36.8
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047873 345 DATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411 (464)
Q Consensus 345 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 411 (464)
.......+..+..+|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455555556666666666666554332 345555555666666666666666666666655554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.28 Score=36.86 Aligned_cols=79 Identities=18% Similarity=-0.000 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCC--CChH-----HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGM--GSSA-----SLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQC 81 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 81 (464)
++..++.++...|+|.+|...|+++++.... .... .+-.+...+.....+.++-..+...|.+.|++++|+.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 5677889999999999999999998742221 0100 00011111112223336667788888888888888888
Q ss_pred HHHHHh
Q 047873 82 FRLLRK 87 (464)
Q Consensus 82 ~~~~~~ 87 (464)
++.+..
T Consensus 145 Le~Ip~ 150 (167)
T 3ffl_A 145 LDGIPS 150 (167)
T ss_dssp HHTSCG
T ss_pred HhcCCc
Confidence 886543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.58 Score=45.23 Aligned_cols=50 Identities=18% Similarity=0.064 Sum_probs=25.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 390 LCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 390 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
|...|+++.|+++.++.+.. .+-+..+|..|..+|...|+++.|+-.++.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 34445555555555555542 122355555555555555555555555443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.64 E-value=1.5 Score=45.34 Aligned_cols=139 Identities=11% Similarity=-0.085 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCC----ChHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChhHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG----SSASLFASILETRGT-HLPGLVLDALMIVYVDLGFLDDA 78 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 78 (464)
+.++.+...++.++...|++++|.+.|+++...-+.. ....-...+...... ..-..-|..++..+.+.|.++.+
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v 918 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 918 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence 5566777889999999999999999999864211111 111112222221111 11124466677777777777777
Q ss_pred HHHHHHHHhCCCCCC----hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 79 IQCFRLLRKHYFRIP----ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 79 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
++.-....+...+.+ ...|..++..+...|++++|...+..+..... -...+..|+..+++.|.
T Consensus 919 i~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 919 LEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCC
Confidence 766655544321111 12456666667777777777666655544322 23344445555555444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.56 Score=41.70 Aligned_cols=70 Identities=13% Similarity=0.011 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK- 87 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 87 (464)
+...++.++.+.|++.+|+..+..++. ..+-+...+..++.+|.+.|+..+|+++|+.+.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~------------------~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTF------------------EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677788899999999999988874 2344558999999999999999999999998754
Q ss_pred ----CCCCCChhc
Q 047873 88 ----HYFRIPARG 96 (464)
Q Consensus 88 ----~~~~~~~~~ 96 (464)
.|+.|++.+
T Consensus 235 L~~eLG~~P~~~l 247 (388)
T 2ff4_A 235 LADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHSCCCCHHH
T ss_pred HHHHhCCCCCHHH
Confidence 477777654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.15 E-value=4.8 Score=36.44 Aligned_cols=94 Identities=14% Similarity=0.086 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC--CCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHhh----CCCCCC--HHH
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKR--GLHAT---AVSFNTLINGHCKAKNLDEGFRLKSVMEG----SGMRPD--VYT 201 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~ 201 (464)
..|...+...|++.+|..++..+... +.... ...+...++.|...+++..|..++++... ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44556666666666666666665432 11100 22445556666666666666666665431 111121 123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 202 YSALINGLCKENRLDDAELLLHEMC 226 (464)
Q Consensus 202 ~~~l~~~~~~~~~~~~a~~~~~~~~ 226 (464)
+...+..+...+++.+|-+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555666666666665555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.07 E-value=5 Score=36.36 Aligned_cols=165 Identities=8% Similarity=0.030 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HH
Q 047873 167 FNTLINGHCKAKNLDEGFRLKSVMEGS--GMRPD---VYTYSALINGLCKENRLDDAELLLHEMCE----RGLTPN--DV 235 (464)
Q Consensus 167 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~ 235 (464)
...|...+...|++.+|.+++..+... |.... ...+...++.|...+++.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356788899999999999999998643 21111 34577788999999999999999998743 222222 33
Q ss_pred HHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC-CCCCCHH----hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 047873 236 IFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN-GLNPDKI----TYTILLDGFCKEGDLESALDIRKEMIKRGIELDN 310 (464)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 310 (464)
.+...+..+...+++. +|...|..+... ....+.. ....++.+..-.+....-..+..........++.
T Consensus 220 ~~~~~~~~~~~e~~y~------~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l 293 (445)
T 4b4t_P 220 YYNLLVKISLHKREYL------EVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKL 293 (445)
T ss_dssp HHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHH
T ss_pred HHHHHHHHHHHhhhHH------HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccccccc
Confidence 4566777777788884 555555554321 1112222 2222222223333323333333333333233467
Q ss_pred HHHHHHHHHHhcc--CChHHHHHHHHHHH
Q 047873 311 VAFTALISGFCRG--GKVVEAERMLREML 337 (464)
Q Consensus 311 ~~~~~l~~~~~~~--~~~~~a~~~~~~~~ 337 (464)
..+..++.+|... .+++.....|....
T Consensus 294 ~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 294 ESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 7888888888654 45666666655443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.7 Score=44.67 Aligned_cols=128 Identities=15% Similarity=0.089 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC------CCCC-C
Q 047873 203 SALINGLCKENR-LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN------GLNP-D 274 (464)
Q Consensus 203 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~ 274 (464)
..++..+...++ ++.|..+|+++.+.....+......++..+...+..+ -+|.+++.+..+. ...+ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~E-----v~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKE-----LDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGH-----HHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhhhhhhhhcccc
Confidence 445555555666 5789999999888732222222233344433333222 3555555554321 1111 1
Q ss_pred H----------HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 047873 275 K----------ITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREM 336 (464)
Q Consensus 275 ~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 336 (464)
. .....-...+...|+++-|+.+-++.....+. +-.+|..|..+|...|+++.|+-.+..+
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 12233345567889999999999999887433 6889999999999999999999988876
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.69 Score=34.74 Aligned_cols=63 Identities=10% Similarity=-0.068 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC-------hhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHY-FRIP-------ARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
-.+..-+..+...|.++.|+-+.+.+.... ..++ ..++..+..++...+++.+|...|+++++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 445556667778899999998888765431 1122 13566777888899999999999998754
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.83 E-value=1.6 Score=31.35 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=33.6
Q ss_pred cCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc
Q 047873 378 PAVETYNALMNGLCKHGQL---KNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD 446 (464)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~ 446 (464)
|++.+--.+.+++.++... .+++.+++.+.+.+..-....+..+.-++.+.|++++|.++.+. +.+.|+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4444444455555555443 24455555555432111233344455555566666666666555 455554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.73 E-value=1.5 Score=29.55 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
+.-+...-++.+...++.|++.+..+.+++|.+.+++..|.++|+-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555554443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.81 E-value=4.9 Score=41.58 Aligned_cols=144 Identities=11% Similarity=0.135 Sum_probs=88.8
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC----------------
Q 047873 99 CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHA---------------- 162 (464)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------- 162 (464)
.++..+...+.++-+.++.... +.++...-.+..++...|++++|.+.|.+.... +..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccc
Confidence 4445555666666655543322 124444455677788888888888888764211 100
Q ss_pred -------CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047873 163 -------TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPD----VYTYSALINGLCKENRLDDAELLLHEMCERGLT 231 (464)
Q Consensus 163 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 231 (464)
-..-|..++..+.+.+.++.+.++-...++.....+ ...|..+.+.+...|++++|-..+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 011256677777788888888877766654321111 12467788888888888888888877766532
Q ss_pred CCHHHHHHHHHHHHhcCCc
Q 047873 232 PNDVIFTTLIDGHCKNGRI 250 (464)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~ 250 (464)
-......++...+..+..
T Consensus 970 -r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCH
T ss_pred -HHHHHHHHHHHHHhCCCh
Confidence 345666677666665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.71 E-value=1.6 Score=29.39 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047873 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422 (464)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 422 (464)
+.=+..+-++.+......|++....+.+++|.+.+++..|.++++-.+.. ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34455566666666667778888888888888888888888888777642 222334455543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.37 E-value=6.1 Score=33.55 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=11.1
Q ss_pred HHHhCCChHHHHHHHHHHH
Q 047873 16 FLVAHKMHSQARDLLHLIV 34 (464)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~ 34 (464)
.....|++=+|-++|+.+.
T Consensus 22 ~~I~~G~yYEAhQ~~Rtl~ 40 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLRTIA 40 (312)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHhhccChHHHHHHHHHHH
Confidence 3445666666666666554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.86 E-value=3.6 Score=30.00 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 342 KPDDATYTMVIDCFCKNGD---TKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 342 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
.|+..+--.+..++.++.. ..+++.+++.+...+..-.-...--+.-++.+.|++++|.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555555555553 334555666655532211222333344556666666666666666665
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.43 E-value=3.2 Score=29.74 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047873 325 KVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (464)
+.-+...-++.+...++.|++.+....+.+|.+.+|+..|.++|+-++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455555555555666666666666666666666666666666666554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=12 Score=35.42 Aligned_cols=257 Identities=11% Similarity=0.044 Sum_probs=119.3
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGH 174 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (464)
..-...+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+=..| ...+..+..++..+
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~ 146 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVW 146 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHH
Confidence 3445556666667777666554332 22355555666777777888777777666665444 33556677777777
Q ss_pred HhcCChhH--HHHHHHHHhhCCCCCCHHHHHHHHHHH-----------Hh-cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047873 175 CKAKNLDE--GFRLKSVMEGSGMRPDVYTYSALINGL-----------CK-ENRLDDAELLLHEMCERGLTPNDVIFTTL 240 (464)
Q Consensus 175 ~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 240 (464)
.+.|.+.. ...-++.+...| +...-..++... .. ..+...+...... ..++...-..+
T Consensus 147 ~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~ 218 (618)
T 1qsa_A 147 RASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMA 218 (618)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHH
Confidence 76665433 222233333322 111111111110 00 0111111111111 01122211111
Q ss_pred HHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhH----HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047873 241 IDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITY----TILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTAL 316 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (464)
..++.+..+ .+.+.|...+........ .+.... ..+.......+...++...+....... .+.....-.
T Consensus 219 ~~~~~rlar----~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 291 (618)
T 1qsa_A 219 AVAFASVAR----QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERR 291 (618)
T ss_dssp HHHHHHHHH----HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHH
T ss_pred HHHHHHHHh----cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHH
Confidence 112221111 123577777776654321 122222 222222223332445555555544432 233333333
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 317 ISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 317 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
+....+.|+++.|...|..|.... .....-.-.+..++...|+.++|..+|..+..
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444456677777777777765421 11233344556666677777777777777765
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.99 E-value=17 Score=36.29 Aligned_cols=354 Identities=11% Similarity=-0.011 Sum_probs=165.2
Q ss_pred hHHHHHHHHHhcCChhHH-HHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhH--HHHHH
Q 047873 61 VLDALMIVYVDLGFLDDA-IQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVF--NVLMH 137 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~ 137 (464)
.-..+++++...|-..+. +.......... ......-....-++...|+.++++.++...+..+...+..+- ..+.-
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKA-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHC-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhcc-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 335667777777754433 32222222211 111222233334566678888887777766542212233322 23333
Q ss_pred HHHhcCChhhHHHHHHHHhhCCC--C-----CCcccHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCH--HHHHHHHH
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRGL--H-----ATAVSFNTLINGHCKAKN-LDEGFRLKSVMEGSGMRPDV--YTYSALIN 207 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 207 (464)
..+..|..+++..++.......- . +....-..+.-+++-.|. -+++.+.+..+.... .+.. ..-..|..
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGl 498 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGL 498 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Confidence 34455555567776665544310 0 001111222223322332 234555555544321 1111 11223444
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHh--HHHHHH
Q 047873 208 GLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDG--HCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKIT--YTILLD 283 (464)
Q Consensus 208 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~ 283 (464)
.+...|+.+....++..+.+.. +......+.-+ +...|+. +.+..+++.+... ..|.... ..++..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~------e~~~~li~~L~~~-~dp~vRygaa~algl 568 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQ------ELADDLITKMLAS-DESLLRYGGAFTIAL 568 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCG------GGGHHHHHHHHHC-SCHHHHHHHHHHHHH
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCCh------HHHHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 5566777777777777666531 33333333333 3345554 3555666666543 1222211 123445
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh-H
Q 047873 284 GFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT-K 362 (464)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~ 362 (464)
+|+..|+.....+++..+.... ..+......+.-++...|+.+.+..++..+.+.+ .|....-..+..+....|.. .
T Consensus 569 AyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~ 646 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQ 646 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCH
T ss_pred HhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcH
Confidence 6677788777777777777542 2233333334444555666666677776665543 34444334444444444443 5
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHh--cC-------CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCH
Q 047873 363 TGFRLLKEMRSDGHLPAVETYNALMNGLCK--HG-------QLKNANMLLDTMLD-LGVVPDDITYNILLEGHCKHGNP 431 (464)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g-------~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~ 431 (464)
++..++..+... ++..+-...+.++.. .| +....++.+..... ..-.++...-..+..+....|+-
T Consensus 647 ~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 647 SAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 677777777653 344433333333332 22 33344443333332 11223344445555555555543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.56 E-value=9.2 Score=32.74 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=9.4
Q ss_pred HHhCCCh---HHHHHHHHHHH
Q 047873 17 LVAHKMH---SQARDLLHLIV 34 (464)
Q Consensus 17 ~~~~g~~---~~A~~~~~~~~ 34 (464)
....|++ =+|-++|+.+.
T Consensus 22 ~I~~G~y~~~YEAHQ~~RTi~ 42 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETRLVA 42 (336)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCccccHHHHHHHHHH
Confidence 3455666 45555555443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.24 E-value=5.6 Score=28.56 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=45.0
Q ss_pred CCCCHHhHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 271 LNPDKITYTILLDGFCKEGDL---ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
..|+..+--....++.+..+. .+++.+++++.+.+..-....+-.+..++.+.|++++|....+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 345666655566666666654 356777777776653223455666667777888888888888777765
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.81 E-value=4.2 Score=36.61 Aligned_cols=98 Identities=9% Similarity=-0.162 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC-CCCChhhHHH--
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYF--RIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG-YSPSVYVFNV-- 134 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~-- 134 (464)
.+...++..|.+.|++++|.+.|.++..... ......+...++.+...+++..+...+.++...- ..++....+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 5677788888888888888888888876422 2234667778888888888888888888765321 1123322221
Q ss_pred --HHHHHHhcCChhhHHHHHHHHhh
Q 047873 135 --LMHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 135 --l~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
-+..+...+++..|.+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 12234456888888887766544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.31 E-value=3.4 Score=33.97 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=35.2
Q ss_pred HHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+.+.|+.+++++....-++..+. |...-..+++.+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344566666666666666665554 6666666667777777777776666666554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.17 E-value=17 Score=32.04 Aligned_cols=164 Identities=15% Similarity=0.070 Sum_probs=98.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHC--CCCCCHhhHH---
Q 047873 280 ILLDGFCKEGDLESALDIRKEMIKRGIELD-----NVAFTALISGFCRGGKVVEAERMLREMLKV--GLKPDDATYT--- 349 (464)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~--- 349 (464)
.++..|...|++.+|..++..+.+.-...| ..++..-+..|...+++.++...+...... .+.+++.+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 678899999999999999988887422212 234566677888999999999999887653 2223333222
Q ss_pred -HHHHHHH-hcCChHHHHHHHHHHHhC-C-CC-c---CHHHHHHHHHHHHhcCCHHHHHHHH-HH-HHhCCCCCCHHHHH
Q 047873 350 -MVIDCFC-KNGDTKTGFRLLKEMRSD-G-HL-P---AVETYNALMNGLCKHGQLKNANMLL-DT-MLDLGVVPDDITYN 419 (464)
Q Consensus 350 -~ll~~~~-~~~~~~~a~~~~~~~~~~-~-~~-~---~~~~~~~l~~~~~~~g~~~~a~~~~-~~-~~~~~~~p~~~~~~ 419 (464)
.-...+. ..+++..|...|-+..+. . .. | +...|..+... . .++..+...++ .. .... ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l-~~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-M-LGQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-H-TTCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-H-cCCHHHHHHHhcccccccc-CCccHHHHH
Confidence 2233455 789999999888777543 1 11 1 12233333222 2 23323332322 12 1222 346666667
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc--CCCCch
Q 047873 420 ILLEGHCKHGNPEDFDKLQSEK--GLVSDY 447 (464)
Q Consensus 420 ~l~~~~~~~g~~~~a~~~~~~~--~~~p~~ 447 (464)
.++.+| ..+++.+..+++++. .+..|.
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~ 289 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKKELAEDV 289 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTTTTTTSH
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHHHHhcCh
Confidence 777776 568999988888874 344454
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.84 E-value=2.1 Score=35.13 Aligned_cols=56 Identities=11% Similarity=-0.079 Sum_probs=48.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 68 VYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 68 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
.+.+.|+.++|++....-++.. |.|......++..+|-.|++++|..-++-..+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4567899999999998888876 6678888899999999999999999998888754
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.86 E-value=18 Score=31.01 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
.+.++..-|.+.+++++|++++.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~ 59 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA 59 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH
Confidence 34445555666666666666543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.46 E-value=18 Score=30.71 Aligned_cols=24 Identities=17% Similarity=-0.029 Sum_probs=12.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHH
Q 047873 164 AVSFNTLINGHCKAKNLDEGFRLK 187 (464)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~a~~~~ 187 (464)
+.....+...|.+.+++.+|...|
T Consensus 134 p~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHH
Confidence 344555555555555555555433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.25 E-value=11 Score=34.01 Aligned_cols=63 Identities=6% Similarity=-0.142 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047873 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGS--GMRPDVYTYSALINGLCKENRLDDAELLLHEMCE 227 (464)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 227 (464)
.+...+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+.++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35667777888888888888888877653 2223345666777888888888888888877654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.48 E-value=12 Score=27.26 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=46.3
Q ss_pred CCCHHhHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 272 NPDKITYTILLDGFCKEGDL---ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
.|+..+-.....++.+..+. .+++.+++.+.+.+..-.....-.+..++.+.|++++|..+.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 46666666666677776654 356777777777654334455566667778888888888888888775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.52 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.43 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.32 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.31 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.25 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.25 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.19 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.99 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.98 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.96 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.94 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.88 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.86 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.78 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.73 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.71 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.69 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.65 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.63 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.61 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.57 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.5 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.48 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.47 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.44 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.4 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.31 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.27 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.19 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.05 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.04 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.02 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.0 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.99 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.98 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.97 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.83 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.8 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.34 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.27 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.91 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.72 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.68 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.64 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.49 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.27 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.15 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.81 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.16 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.66 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.1e-24 Score=193.02 Aligned_cols=382 Identities=13% Similarity=0.016 Sum_probs=302.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047873 13 MVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFR 91 (464)
Q Consensus 13 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 91 (464)
+.+.+.+.|++++|++.|+++++ ..|++ .++..++.+|.+.|++++|+..|+++.+.+ |
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~-------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 64 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWR-------------------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-P 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 56778889999999999999984 24544 888999999999999999999999998876 4
Q ss_pred CChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHH
Q 047873 92 IPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLI 171 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 171 (464)
.+..++..++.++.+.|++++|+..+....+.... +..............+....+........... ...........
T Consensus 65 ~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 142 (388)
T d1w3ba_ 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CCHHHHHHHHHHhhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 56778889999999999999999999999887654 55566666666667777777776666655543 33455555666
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047873 172 NGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRID 251 (464)
Q Consensus 172 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (464)
......+....+...+....... +.+...+..+...+...|++++|...+++..+..+ -+...+..+...+...++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~ 220 (388)
T d1w3ba_ 143 NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTT
T ss_pred ccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHH
Confidence 66777788888888887776553 33567778888889999999999999998887642 25677888888888888874
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047873 252 MAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAER 331 (464)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (464)
+|...+++...... .+...+..+..++.+.|++++|...|++..+..+. +...+..+...+...|++++|..
T Consensus 221 ------~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~ 292 (388)
T d1w3ba_ 221 ------RAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp ------HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ------HHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 88999888877543 35667777888889999999999999998887544 67788888889999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047873 332 MLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGV 411 (464)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 411 (464)
.++...... +.+...+..+...+...|++++|+..|++.++.. +-+..++..+..+|.+.|++++|.+.|+++++.
T Consensus 293 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l-- 368 (388)
T d1w3ba_ 293 CYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-- 368 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--
T ss_pred HHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 998887764 5567788888888999999999999999888752 235777888889999999999999999998864
Q ss_pred CC-CHHHHHHHHHHHHhcCC
Q 047873 412 VP-DDITYNILLEGHCKHGN 430 (464)
Q Consensus 412 ~p-~~~~~~~l~~~~~~~g~ 430 (464)
.| +...|..+..+|.+.||
T Consensus 369 ~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 369 SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 45 57778888888887775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.5e-23 Score=187.05 Aligned_cols=381 Identities=12% Similarity=0.023 Sum_probs=313.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
++..+.+.|++++|++.|+++.+.. |-+..++..++.++.+.|++++|+..++++++..+. +..++..+..++...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence 5667888999999999999998875 456788999999999999999999999999998765 78899999999999999
Q ss_pred hhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047873 145 IKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHE 224 (464)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 224 (464)
+++|...+....... +.+..............+....+........... .................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 999999999998764 3344555555666666677777766666555443 33445556666777788888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047873 225 MCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKR 304 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (464)
...... .+...+..+...+...+.+ +.|...+++..... +.+...+..+..++...|++++|...++.....
T Consensus 161 ~~~~~~-~~~~~~~~l~~~~~~~~~~------~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 161 AIETQP-NFAVAWSNLGCVFNAQGEI------WLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCH------HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred hhccCc-chhHHHHhhcccccccCcH------HHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 777642 3567777788888887766 69999999988753 235678888999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 047873 305 GIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYN 384 (464)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (464)
+.. +...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|.+.++..... .+.+...+.
T Consensus 233 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 309 (388)
T d1w3ba_ 233 SPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLN 309 (388)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred hhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhh
Confidence 654 67788889999999999999999999999875 446778999999999999999999999998886 445788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCc-hhHHHHhhccchhhh
Q 047873 385 ALMNGLCKHGQLKNANMLLDTMLDLGVVP-DDITYNILLEGHCKHGNPEDFDKLQSE-KGLVSD-YACYTSLVSKSSKYR 461 (464)
Q Consensus 385 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~p~-~~~~~~ll~~~~~~~ 461 (464)
.+...+...|++++|++.+++.++. .| +..++..+..+|.+.|++++|.+.+++ +.+.|+ ...|..+-..+.+.|
T Consensus 310 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 310 NLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999864 44 677889999999999999999999998 788886 556666666665554
Q ss_pred h
Q 047873 462 Q 462 (464)
Q Consensus 462 ~ 462 (464)
|
T Consensus 388 D 388 (388)
T d1w3ba_ 388 D 388 (388)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.1e-14 Score=126.50 Aligned_cols=230 Identities=11% Similarity=-0.086 Sum_probs=184.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKH 88 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 88 (464)
+.-.+..+...|++++|++.|++++ ...|+. .+|..++.+|...|++++|+..|++..+.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al-------------------~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 82 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAV-------------------QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-------------------HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-------------------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc
Confidence 4456778899999999999999999 445655 89999999999999999999999999887
Q ss_pred CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhh---------------HHHHHHHHHhcCChhhHHHHHH
Q 047873 89 YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYV---------------FNVLMHKLCKEGKIKDAQMVFD 153 (464)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~ 153 (464)
. |-+...+..++..+...|++++|.+.++++....+. .... ....+..+...+.+.+|...|.
T Consensus 83 ~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 83 K-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHH
T ss_pred c-cccccccccccccccccccccccccchhhHHHhccc-hHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 6 446788899999999999999999999998875432 1111 1112223445566778888888
Q ss_pred HHhhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047873 154 EFGKRG-LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP 232 (464)
Q Consensus 154 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 232 (464)
+..... -..+..++..+...+...|++++|...++...... +-+...|..+..++...|++++|++.|++..+... -
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-G 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-c
Confidence 876642 12345677888899999999999999999988764 34677899999999999999999999999988642 2
Q ss_pred CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh
Q 047873 233 NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT 268 (464)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (464)
+...+..+..+|.+.|++ ++|+..|++.+.
T Consensus 239 ~~~a~~~lg~~~~~~g~~------~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAH------REAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCH------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCH------HHHHHHHHHHHH
Confidence 677888999999998876 699999999876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.7e-13 Score=118.96 Aligned_cols=273 Identities=10% Similarity=0.034 Sum_probs=190.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 047873 133 NVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKE 212 (464)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (464)
-.....+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|...+++..+.. +-+...+..++.+|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 346667888899999999998888764 3456778888888888899999998888887653 33567778888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCCh
Q 047873 213 NRLDDAELLLHEMCERGLTPNDVIFT-TLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 291 (464)
|++++|.+.++...... |+..... ........ .+.......+..+...+.+
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~ 152 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG--------------------------AGLGPSKRILGSLLSDSLF 152 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------------CTTHHHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhhh--------------------------cccccchhhHHHHHHhhHH
Confidence 99998888888887753 2211110 00000000 0000011111223344566
Q ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 047873 292 ESALDIRKEMIKRGIE-LDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKE 370 (464)
Q Consensus 292 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 370 (464)
.++...+....+..+. .+...+..+...+...|++++|...+++..... +-+...+..+..+|...|++++|.+.|++
T Consensus 153 ~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 231 (323)
T d1fcha_ 153 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRR 231 (323)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHH
Confidence 7788888877765432 356778888888999999999999999988764 34577888899999999999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047873 371 MRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDL----------GVVPDDITYNILLEGHCKHGNPEDFDKL 437 (464)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 437 (464)
+++.. +-+..+|..+..+|.+.|++++|++.|++.++. ........|..+-.++...|+.+.+...
T Consensus 232 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 232 ALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88853 235778888999999999999999999988752 1111233566666677777777665444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=6.3e-12 Score=107.72 Aligned_cols=216 Identities=11% Similarity=0.020 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcC-ChhHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLG-FLDDAIQCFRL 84 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g-~~~~A~~~~~~ 84 (464)
..+++.+..++.+.+.+++|++.+++++ .+.|+. .+|+....++...| ++++|+..+++
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai-------------------~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~ 103 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAI-------------------ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 103 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH-------------------HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 6788899999999999999999999999 567777 89999999998877 58999999999
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCc
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 164 (464)
+.+.. |-+..+|..+...+.+.|++++|++.++++++..+. +..+|..+..++...|++++|++.++.+.+.+ +.+.
T Consensus 104 al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~ 180 (315)
T d2h6fa1 104 IIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNN 180 (315)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH
T ss_pred HHHHH-HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccH
Confidence 98886 557889999999999999999999999999998776 89999999999999999999999999999875 4467
Q ss_pred ccHHHHHHHHHhcCC------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHH
Q 047873 165 VSFNTLINGHCKAKN------LDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTP-NDVIF 237 (464)
Q Consensus 165 ~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 237 (464)
..|+.+...+.+.+. +++|+..+....+.. +.+...|..+...+.. ...+++.+.++...+....+ +...+
T Consensus 181 ~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 258 (315)
T d2h6fa1 181 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLI 258 (315)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHH
Confidence 788887777776665 568888888877664 3467777777666554 44678888888877654332 34555
Q ss_pred HHHHHHHHh
Q 047873 238 TTLIDGHCK 246 (464)
Q Consensus 238 ~~l~~~~~~ 246 (464)
..+...|..
T Consensus 259 ~~l~~~y~~ 267 (315)
T d2h6fa1 259 AFLVDIYED 267 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=5.6e-11 Score=101.72 Aligned_cols=219 Identities=8% Similarity=-0.082 Sum_probs=172.3
Q ss_pred CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC-ChhhHHHHHHHHHhcCCCCChhhHH
Q 047873 56 HLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTN-LPTVTLGFYLEILDYGYSPSVYVFN 133 (464)
Q Consensus 56 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (464)
.|+- .+++.+...+.+.+.+++|+++++++.+.. |-+..+|.....++...| ++++|+..++++++..+. +..+|.
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~ 116 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWH 116 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHH
Confidence 3443 777888888999999999999999999986 557788999998888876 489999999999998876 899999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047873 134 VLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKEN 213 (464)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 213 (464)
.+..++.+.|++++|+..++++.+.. +.+...|..+...+...|++++|++.++.+++.. +.+...|+.+..++.+.+
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~ 194 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 194 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcc
Confidence 99999999999999999999998875 4578899999999999999999999999999875 346778888777777666
Q ss_pred C------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHH
Q 047873 214 R------LDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNP-DKITYTILLDGFC 286 (464)
Q Consensus 214 ~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 286 (464)
. +++|++.+.+..+..+ .+...|..+...+...+. .++...++........+ +...+..++..|.
T Consensus 195 ~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 195 GYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGL-------SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCG-------GGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred ccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhcCh-------HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 5 5788999988887743 367777777666655442 35666666665533222 3445555555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=7.6e-10 Score=96.73 Aligned_cols=276 Identities=9% Similarity=0.004 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLP--GLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
.+.......++...|++++|+++|++++..... .++. ..++..+...|...|++++|+..|+.
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~---------------~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 76 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPP---------------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQ 76 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---------------CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344556677788999999999999999843210 0000 14677788999999999999999998
Q ss_pred HHhCCCC----C-ChhcHHHHHHHHHcCCChhhHHHHHHHHHhc----CCCCC---hhhHHHHHHHHHhcCChhhHHHHH
Q 047873 85 LRKHYFR----I-PARGCRCLIDRMMRTNLPTVTLGFYLEILDY----GYSPS---VYVFNVLMHKLCKEGKIKDAQMVF 152 (464)
Q Consensus 85 ~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 152 (464)
....... + ....+..+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+
T Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~ 156 (366)
T d1hz4a_ 77 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 156 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 7654211 1 1234566777888999999999998887642 11111 234556777888999999999999
Q ss_pred HHHhhCC----CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHH
Q 047873 153 DEFGKRG----LHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS----GMRP--DVYTYSALINGLCKENRLDDAELLL 222 (464)
Q Consensus 153 ~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 222 (464)
....... .......+......+...+++..+...+...... +..+ ....+..+...+...|++++|...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (366)
T d1hz4a_ 157 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 236 (366)
T ss_dssp HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 8876542 1122334455666777889999888887765432 1111 1234556677788899999999999
Q ss_pred HHHHHCCCCC---CHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh----CCCCCC-HHhHHHHHHHHHhCCChHHH
Q 047873 223 HEMCERGLTP---NDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCT----NGLNPD-KITYTILLDGFCKEGDLESA 294 (464)
Q Consensus 223 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a 294 (464)
....+..... ....+..+...+...|++ ++|...+++... .+..|+ ..++..+..+|...|++++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (366)
T d1hz4a_ 237 RHTAKPEFANNHFLQGQWRNIARAQILLGEF------EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 310 (366)
T ss_dssp HHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 8876543221 233455566777777765 588888777653 233332 34566677778888888888
Q ss_pred HHHHHHHHH
Q 047873 295 LDIRKEMIK 303 (464)
Q Consensus 295 ~~~~~~~~~ 303 (464)
.+.+++.++
T Consensus 311 ~~~l~~Al~ 319 (366)
T d1hz4a_ 311 QRVLLDALK 319 (366)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=2.5e-10 Score=95.03 Aligned_cols=200 Identities=11% Similarity=-0.048 Sum_probs=140.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
...+|..++.+|.+.|++++|++.|++++ .+.|+. .+|..++.+|.+.|++++|++.|++
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al-------------------~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 96 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQAL-------------------AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 96 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhh-------------------ccCCCCHHHHhhhchHHHHHHHHHHhhhhhhH
Confidence 35678889999999999999999999999 445666 9999999999999999999999999
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCc
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATA 164 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 164 (464)
+.... |-+..++..++.++...|++++|...++..++..+. +......+...+.+.+..+.+..+....... .++.
T Consensus 97 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 172 (259)
T d1xnfa_ 97 VLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQ 172 (259)
T ss_dssp HHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCS
T ss_pred HHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhh
Confidence 99886 446778888999999999999999999999987654 5555555555566666666666666555543 2222
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047873 165 VSFNTLINGHCKAKNLDEGFRLKSVMEGSG--MRP-DVYTYSALINGLCKENRLDDAELLLHEMCERG 229 (464)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 229 (464)
..++ ++..+.................... ..| ...++..+...+...|++++|.+.|++.....
T Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 173 WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2222 2233222222111111111111100 011 23456778999999999999999999998764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=1.7e-09 Score=92.19 Aligned_cols=183 Identities=13% Similarity=0.127 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 047873 256 MKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLRE 335 (464)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (464)
.+++..+|++......+.+...|...+....+.|+++.|..+|+.+++.........|...+..+.+.|+.+.|..+|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 46889999999876555567778888889999999999999999999875554456789999999999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC
Q 047873 336 MLKVGLKPDDATYTMVIDC-FCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLG-VVP 413 (464)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p 413 (464)
+.+.+ +.+...|...+.. +...|+.+.|..+|+.+.+. .+.+...|..++..+.+.|+++.|..+|++..+.. ..|
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 98875 3344555544443 34568999999999999986 44578899999999999999999999999998753 333
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 414 D--DITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 414 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
+ ...|...+.--...|+.+.+.++.++
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 45788888888889999999998775
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=4.7e-09 Score=91.52 Aligned_cols=200 Identities=14% Similarity=0.073 Sum_probs=105.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhh----CCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----CCHHH
Q 047873 168 NTLINGHCKAKNLDEGFRLKSVMEG----SGMRP---DVYTYSALINGLCKENRLDDAELLLHEMCERGLT----PNDVI 236 (464)
Q Consensus 168 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 236 (464)
..+...+...|++..+...+..... .+... ....+..+...+...|+++.+...+......... .....
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 3344445555555555555544332 11111 1123444556666777777777777666543211 12223
Q ss_pred HHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC----CCCC--CHHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--
Q 047873 237 FTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN----GLNP--DKITYTILLDGFCKEGDLESALDIRKEMIKRGIEL-- 308 (464)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 308 (464)
+......+...+.. ..+...+...... +..+ ....+......+...|+++.|...++...+.....
T Consensus 175 ~~~~~~~~~~~~~~------~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 248 (366)
T d1hz4a_ 175 LAMLIQCSLARGDL------DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 248 (366)
T ss_dssp HHHHHHHHHHHTCH------HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHHhhhhH------HHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence 33334444444443 3555444443321 1111 12234455566677778888877777665543221
Q ss_pred -CHHHHHHHHHHHhccCChHHHHHHHHHHHH----CCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 309 -DNVAFTALISGFCRGGKVVEAERMLREMLK----VGLKPD-DATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 309 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
....+..+...+...|++++|...++++.. .+..|+ ...+..+..+|...|++++|.+.+++..+
T Consensus 249 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 249 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233455566777777777777777776653 222222 33556666777777777777777776654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=2.9e-11 Score=104.99 Aligned_cols=156 Identities=7% Similarity=-0.075 Sum_probs=90.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHH----------hcCChhHH
Q 047873 10 YSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYV----------DLGFLDDA 78 (464)
Q Consensus 10 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~----------~~g~~~~A 78 (464)
+..++......+..++|++++++++ ...|+. .+|+.....+. ..|++++|
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l-------------------~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~a 92 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQIL-------------------GANPDFATLWNCRREVLQHLETEKSPEESAALVKAE 92 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHH-------------------HHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 4445444444455689999999998 445666 66654444333 23346677
Q ss_pred HHHHHHHHhCCCCCChhcHHHHHHHHHcCCC--hhhHHHHHHHHHhcCCCCChhhHH-HHHHHHHhcCChhhHHHHHHHH
Q 047873 79 IQCFRLLRKHYFRIPARGCRCLIDRMMRTNL--PTVTLGFYLEILDYGYSPSVYVFN-VLMHKLCKEGKIKDAQMVFDEF 155 (464)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~ 155 (464)
+..++.+.+.+ |-+...|..+..++...++ +++|+..+.++++..+. +...+. .....+...+.++.|+..++.+
T Consensus 93 l~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~ 170 (334)
T d1dcea1 93 LGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSL 170 (334)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHH
Confidence 77777766654 3355555555555555443 56677777776665443 344433 3334555566666677666666
Q ss_pred hhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 047873 156 GKRGLHATAVSFNTLINGHCKAKNLDEGFRLK 187 (464)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 187 (464)
.+.+ +-+...|+.+..++...|++++|...+
T Consensus 171 i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 171 ITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp TTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6553 234555666666666666665554433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=3e-09 Score=90.64 Aligned_cols=237 Identities=11% Similarity=0.051 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHh-------
Q 047873 7 LHAYSTMVHFLVAHK--------MHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVD------- 71 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 71 (464)
+..|...+..=..++ ..+.+..+|++++.. .+-...+|...+..+.+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~------------------~~~~~~lW~~y~~~~~~~~~~~~~ 69 (308)
T d2onda1 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV------------------LGHHPDIWYEAAQYLEQSSKLLAE 69 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH------------------HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHHcCchHHH
Confidence 456666665433222 134466667776632 23334667666654433
Q ss_pred -------cCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 72 -------LGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 72 -------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
.+..++|..+|++......+.+...|...+......|++++|..+|+++++..+.....+|...+..+.+.|+
T Consensus 70 ~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~ 149 (308)
T d2onda1 70 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 149 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC
T ss_pred HHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC
Confidence 3345889999999887654556677888888899999999999999999987655445678999999999999
Q ss_pred hhhHHHHHHHHhhCCCCCCcccHHHHHHH-HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047873 145 IKDAQMVFDEFGKRGLHATAVSFNTLING-HCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLH 223 (464)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 223 (464)
++.|.++|+...+.+ +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+...|+++.|..+|+
T Consensus 150 ~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe 227 (308)
T d2onda1 150 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999998774 3344455444443 345689999999999998763 4467789999999999999999999999
Q ss_pred HHHHCC-CCCC--HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhC
Q 047873 224 EMCERG-LTPN--DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTN 269 (464)
Q Consensus 224 ~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (464)
+..+.. ..|. ...|...+..-...|+. +.+.++++++.+.
T Consensus 228 ~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~------~~~~~~~~r~~~~ 270 (308)
T d2onda1 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDL------ASILKVEKRRFTA 270 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCH------HHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHH
Confidence 988763 2332 45677777776776765 6889998888653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=4.6e-11 Score=103.66 Aligned_cols=258 Identities=8% Similarity=-0.076 Sum_probs=150.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHH----------cCCChhhHHHHHHHHHhcCCCCChhhHHH
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMM----------RTNLPTVTLGFYLEILDYGYSPSVYVFNV 134 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (464)
++......+..++|+++++++.... |-+..+|+.....+. ..|++.+|+..++.+++..+. +...|..
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~ 112 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH 112 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 3333444445588888988888765 334445543332222 233466778888887776654 6777777
Q ss_pred HHHHHHhcCC--hhhHHHHHHHHhhCCCCCCcccHH-HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 047873 135 LMHKLCKEGK--IKDAQMVFDEFGKRGLHATAVSFN-TLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK 211 (464)
Q Consensus 135 l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (464)
+..++...++ +++|...+..+.+.. +++...+. .....+...+.+++|+..++.+.... +-+...|+.+..++..
T Consensus 113 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred hhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 7766666554 677787887776653 23444443 33455666777888888887777664 3366677777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCCh
Q 047873 212 ENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDL 291 (464)
Q Consensus 212 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 291 (464)
.|++++|...+....+. .|+ . ......+...+..+ ++...+........ ++...+..++..+...++.
T Consensus 191 ~~~~~~A~~~~~~~~~~--~~~--~-~~~~~~~~~l~~~~------~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~ 258 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENV--LLK--E-LELVQNAFFTDPND------QSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSE 258 (334)
T ss_dssp HSCCCCSSSCCSSCHHH--HHH--H-HHHHHHHHHHCSSC------SHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHh--HHH--H-HHHHHHHHHhcchh------HHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhH
Confidence 77777666555443332 111 1 11222233333332 45555555554432 2333444455555566666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 292 ESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
.+|...+.+..+.++. +...+..+...+...|++++|...++++.+.
T Consensus 259 ~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 259 LESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666666666555322 3455566666666777777777777776664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=3.2e-10 Score=94.35 Aligned_cols=222 Identities=12% Similarity=-0.018 Sum_probs=150.6
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHH
Q 047873 20 HKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCR 98 (464)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 98 (464)
.++.+.|+.-+++++.+... .++.. .++..++..|.+.|++++|++.|++..... |-++.+|.
T Consensus 12 ~~~~e~al~~~~e~l~~~~~---------------~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~ 75 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRAL---------------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFN 75 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCC---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhc---------------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHh
Confidence 34556667777777643211 11222 678888999999999999999999999886 55788999
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 047873 99 CLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAK 178 (464)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (464)
.++.++.+.|++++|+..|+++++..+. +..++..+..++...|++++|...|+...+.. +.+......+...+.+.+
T Consensus 76 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~ 153 (259)
T d1xnfa_ 76 YLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLD 153 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred hhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998765 77888999999999999999999999988764 234444444444555566
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcccc
Q 047873 179 NLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENR----LDDAELLLHEMCERGLTP-NDVIFTTLIDGHCKNGRIDMA 253 (464)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 253 (464)
..+.+..+........ ++...++ ++..+..... .+.+...+...... .| ...+|..+...+...|++
T Consensus 154 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~--- 225 (259)
T d1xnfa_ 154 EKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDL--- 225 (259)
T ss_dssp HHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCH---
T ss_pred hHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCH---
Confidence 5555555555555432 2222222 2222222221 22222222211111 11 234566678888888876
Q ss_pred cCHHHHHHHHHHHHhCC
Q 047873 254 GDMKEARKIVDEMCTNG 270 (464)
Q Consensus 254 ~~~~~a~~~~~~~~~~~ 270 (464)
++|...|++.+...
T Consensus 226 ---~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 226 ---DSATALFKLAVANN 239 (259)
T ss_dssp ---HHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHHcC
Confidence 69999999998764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=5.4e-09 Score=74.38 Aligned_cols=107 Identities=9% Similarity=-0.126 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
.+..-++.+...|++++|+..|++++. ..|+. .+|..+..+|...|++++|+..|+....
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~-------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 65 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIK-------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------cCCcchhhhhcccccccccccccccchhhhhHHH
Confidence 344566777888888888888888873 34454 7788888888888888888888888877
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 136 (464)
.+ |.+...|..++.++...|++++|+..|++.++..+. ++..+..+.
T Consensus 66 ~~-p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 112 (117)
T d1elwa_ 66 LK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ 112 (117)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred hc-cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 76 556777888888888888888888888888876544 444444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.9e-08 Score=78.66 Aligned_cols=128 Identities=12% Similarity=-0.051 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
..|+. +..+...|++++|++.|.++. +|+..+|..+..+|...|++++|++.|++..+
T Consensus 7 ~l~~~-g~~~~~~~d~~~Al~~~~~i~---------------------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ 64 (192)
T d1hh8a_ 7 SLWNE-GVLAADKKDWKGALDAFSAVQ---------------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 64 (192)
T ss_dssp HHHHH-HHHHHHTTCHHHHHHHHHTSS---------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHCCCHHHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence 34544 566777888888888776532 34556777788888888888888888888877
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCC---------------hhhHHHHHHHHHhcCChhhHHHHH
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPS---------------VYVFNVLMHKLCKEGKIKDAQMVF 152 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~ 152 (464)
.+ |....+|..++.++.+.|++++|+..|++.+....... ..++..+..++.+.|++++|.+.+
T Consensus 65 ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l 143 (192)
T d1hh8a_ 65 RD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 143 (192)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Hh-hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 76 44667777788888888888888888887765321100 123344555666666666666666
Q ss_pred HHHhhC
Q 047873 153 DEFGKR 158 (464)
Q Consensus 153 ~~~~~~ 158 (464)
+.....
T Consensus 144 ~~A~~~ 149 (192)
T d1hh8a_ 144 ALATSM 149 (192)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 665544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=4e-08 Score=82.66 Aligned_cols=208 Identities=10% Similarity=-0.040 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...|...+.+|...|++++|++.|.++..- ....+.+++. .+|..++.+|.+.|++++|++.+++.
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~-------------~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a 103 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADY-------------QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHH-------------HHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence 346888899999999999999999998731 1111222333 78899999999999999999999987
Q ss_pred HhC----CCC-CChhcHHHHHHHHH-cCCChhhHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCChhhHHHHHHH
Q 047873 86 RKH----YFR-IPARGCRCLIDRMM-RTNLPTVTLGFYLEILDY----GYSP-SVYVFNVLMHKLCKEGKIKDAQMVFDE 154 (464)
Q Consensus 86 ~~~----~~~-~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (464)
... +.. ....++..++..+. ..|++++|++.|+++.+. +..+ -..++..+...+...|++++|...|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~ 183 (290)
T d1qqea_ 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHH
Confidence 543 211 11344566666664 469999999999987653 1111 134577889999999999999999999
Q ss_pred HhhCCCCCCcc------cHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC---HHHHHHHHHHHHh--cCChhHHHHHH
Q 047873 155 FGKRGLHATAV------SFNTLINGHCKAKNLDEGFRLKSVMEGSGMR-PD---VYTYSALINGLCK--ENRLDDAELLL 222 (464)
Q Consensus 155 ~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~~~~~~a~~~~ 222 (464)
+.......... .+...+..+...++++.|...++...+.... ++ ......++.++.. .+.+++|+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y 263 (290)
T d1qqea_ 184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (290)
T ss_dssp HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 87653221111 2344555667889999999999998765311 12 2234455555544 23467777777
Q ss_pred HHHHH
Q 047873 223 HEMCE 227 (464)
Q Consensus 223 ~~~~~ 227 (464)
+.+.+
T Consensus 264 ~~~~~ 268 (290)
T d1qqea_ 264 DNFMR 268 (290)
T ss_dssp TTSSC
T ss_pred HHHhh
Confidence 65543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=8.3e-09 Score=78.19 Aligned_cols=108 Identities=8% Similarity=-0.070 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLR 86 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 86 (464)
..+...++.|.+.|++++|+..|++++. ..|+. ..|..+...|...|++++|++.|++..
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~-------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal 71 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIE-------------------LNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 71 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccc-------------------cchhhhhhhhhhHHHHHhccccchHHHHHHHHH
Confidence 4556677778888888888888888873 34555 888888888888888888888888887
Q ss_pred hCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 047873 87 KHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 136 (464)
+.+ |.+..+|..++.++...|++++|...+++++...+. +...+..+.
T Consensus 72 ~~~-p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~-~~~~~~~l~ 119 (159)
T d1a17a_ 72 ELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQ 119 (159)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred HHc-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 775 446677888888888888888888888888876644 455544443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=3.1e-09 Score=84.34 Aligned_cols=101 Identities=6% Similarity=-0.042 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 047873 4 RLTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCF 82 (464)
Q Consensus 4 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 82 (464)
.|++..+...+..|.+.|++++|+..|++++. ..|+. .+|..++.+|.+.|++++|+..|
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~-------------------~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~ 61 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-------------------RNPLVAVYYTNRALCYLKMQQPEQALADC 61 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCCCCHHHHHhHHHHHhhhhhhhhhhHHH
Confidence 37788888999999999999999999999883 34555 88999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 83 RLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
++..+.+ |-+..+|..++.++...|++++|+..|+++++..
T Consensus 62 ~~al~l~-p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 62 RRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9998875 4467788889999999999999999999887643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=1.2e-07 Score=73.92 Aligned_cols=122 Identities=8% Similarity=-0.091 Sum_probs=92.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 047873 66 MIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKI 145 (464)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (464)
...+...|++++|++.|+.+ .++++.+|..++.++...|++++|++.|++.++..+. ++..|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 44578899999999999864 2467788889999999999999999999999998876 788999999999999999
Q ss_pred hhHHHHHHHHhhCCCCCCc----------------ccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 146 KDAQMVFDEFGKRGLHATA----------------VSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
++|.+.|++..... +.+. .++..+..++.+.|++++|.+.++...+.
T Consensus 87 ~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 87 DLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999876531 1111 12333444555556666666655555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=9.5e-08 Score=67.72 Aligned_cols=92 Identities=13% Similarity=-0.031 Sum_probs=70.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
.+..+.+.|++++|+..|++..... |.+...|..+..++...|++++|+..+.++++..+. ++..|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 4556777788888888888877775 456677777778888888888888888888877654 77777778888888888
Q ss_pred hhhHHHHHHHHhhC
Q 047873 145 IKDAQMVFDEFGKR 158 (464)
Q Consensus 145 ~~~a~~~~~~~~~~ 158 (464)
+++|+..|+...+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.73 E-value=2.4e-05 Score=64.23 Aligned_cols=230 Identities=14% Similarity=0.037 Sum_probs=163.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHH
Q 047873 6 TLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIVYVD----LGFLDDAIQC 81 (464)
Q Consensus 6 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 81 (464)
|+.++.-|+..+.+.|++++|++.|+++... -+..+...|..+|.. ..+...|...
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--------------------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~ 60 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--------------------KENSGCFNLGVLYYQGQGVEKNLKKAASF 60 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHcCCCcchhHHHHHHh
Confidence 5788999999999999999999999998742 244667778888876 6689999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHc----CCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhhHHHHHH
Q 047873 82 FRLLRKHYFRIPARGCRCLIDRMMR----TNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCK----EGKIKDAQMVFD 153 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 153 (464)
++.....+ .......+...+.. .++.+.|...++...+.|. ......+...+.. ......+...+.
T Consensus 61 ~~~a~~~~---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~ 134 (265)
T d1ouva_ 61 YAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFT 134 (265)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred hccccccc---ccchhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhh
Confidence 99988776 33444444444432 5677889999999888763 3333344444443 344566677776
Q ss_pred HHhhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHH
Q 047873 154 EFGKRGLHATAVSFNTLINGHCK----AKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCK----ENRLDDAELLLHEM 225 (464)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 225 (464)
..... .+...+..+...+.. ..+...+..+++...+.| +..+...+...|.. ..++++|+.+|.+.
T Consensus 135 ~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~a 208 (265)
T d1ouva_ 135 KACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 208 (265)
T ss_dssp HHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred hhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhh
Confidence 66554 356677778887775 456777888888877654 56666667777765 57899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCC
Q 047873 226 CERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLN 272 (464)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (464)
.+.| ++..+..|...|.. |.- ...+.+.|.++|++....|..
T Consensus 209 a~~g---~~~a~~~LG~~y~~-G~g-~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 209 CELE---NGGGCFNLGAMQYN-GEG-VTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHTT---CHHHHHHHHHHHHT-TSS-SSCCSTTHHHHHHHHHHHTCH
T ss_pred hccc---CHHHHHHHHHHHHc-CCC-CccCHHHHHHHHHHHHHCcCH
Confidence 9886 45666677777764 321 123456899999999887643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.71 E-value=4e-05 Score=62.85 Aligned_cols=48 Identities=8% Similarity=-0.059 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhC
Q 047873 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK----NGDTKTGFRLLKEMRSD 374 (464)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 374 (464)
.++++|..+|.+..+.| ++..+..|...|.+ .++.++|.+.|++..+.
T Consensus 196 ~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 196 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred cchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 34555555555555443 23333344444432 22455555555555444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=2.1e-07 Score=70.19 Aligned_cols=93 Identities=13% Similarity=-0.010 Sum_probs=74.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (464)
..++.|.+.|++++|+..|++..+.+ |.+...|..+..++...|++++|...|+++++..+. +..+|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence 34556778888888888888888776 456777888888888888888888888888877654 6778888888888888
Q ss_pred ChhhHHHHHHHHhhC
Q 047873 144 KIKDAQMVFDEFGKR 158 (464)
Q Consensus 144 ~~~~a~~~~~~~~~~ 158 (464)
++++|...+++....
T Consensus 93 ~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 93 KFRAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 888888888887775
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=7.6e-08 Score=76.04 Aligned_cols=100 Identities=11% Similarity=-0.079 Sum_probs=80.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 047873 57 LPGLVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLM 136 (464)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 136 (464)
|+...+-..+..|.+.|++++|+..|++..... |.+...|..++.+|.+.|++++|+..|+++++..+. ++.+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 455566677888888888888888888888776 556778888888888888888888888888876654 677888888
Q ss_pred HHHHhcCChhhHHHHHHHHhhC
Q 047873 137 HKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+|...|++++|...|++....
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888876553
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=4.2e-07 Score=76.26 Aligned_cols=204 Identities=12% Similarity=-0.060 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC-----Ch
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKH----YFRI-PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP-----SV 129 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~ 129 (464)
..|...+..|...|++++|++.|++.... +-++ -..+|..++.+|.+.|++++|+..+++..+..... ..
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 35677788899999999999999988653 2111 23578889999999999999999999877532111 13
Q ss_pred hhHHHHHHHHHh-cCChhhHHHHHHHHhhC----CCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-----C
Q 047873 130 YVFNVLMHKLCK-EGKIKDAQMVFDEFGKR----GLHA-TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRP-----D 198 (464)
Q Consensus 130 ~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~ 198 (464)
.++..+...|.. .|++++|.+.+++..+. +.++ ...++..+...+...|++++|...|+++....... .
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 455566666644 69999999999887542 1111 13457788999999999999999999987653211 1
Q ss_pred H-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHH
Q 047873 199 V-YTYSALINGLCKENRLDDAELLLHEMCERGLT-PN---DVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMC 267 (464)
Q Consensus 199 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~ 267 (464)
. ..+...+.++...|+++.|...+++..+..+. ++ ......++.++.. ++ .+.+.+|+..|+++.
T Consensus 198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~-~d---~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE-GD---SEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT-TC---TTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHh-cC---HHHHHHHHHHHHHHh
Confidence 1 22344556777889999999999998776321 11 2233455555544 22 224567777776543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.63 E-value=7.2e-08 Score=67.72 Aligned_cols=89 Identities=11% Similarity=0.007 Sum_probs=50.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 047873 65 LMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGK 144 (464)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (464)
++..+.+.|++++|+..|+++.... |-+..+|..++.++.+.|++++|+..++++++..+. +..++..+..+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 4444555556666666665555554 334555555555555666666666666665555443 55555556666666666
Q ss_pred hhhHHHHHHHH
Q 047873 145 IKDAQMVFDEF 155 (464)
Q Consensus 145 ~~~a~~~~~~~ 155 (464)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.5e-06 Score=65.98 Aligned_cols=124 Identities=12% Similarity=-0.080 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhcCC----CChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 8 HAYSTMVHFLVAHKMHSQARDLLHLIVSKKGM----GSSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 8 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
..+.-.+..+.+.|++++|+..|++++.-... ..........+. ..+++.+..+|.+.|++++|+..++
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~-------~~~~~nla~~y~k~~~~~~A~~~~~ 86 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR-------LASHLNLAMCHLKLQAFSAAIESCN 86 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhH-------HHHHHHHHHHHHhhhhcccccchhh
Confidence 45566788999999999999999999853221 111111111111 1355667777778888888888888
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.....+ |.+..++..++.++...|++++|+..|+++++..+. +..+...+..+..
T Consensus 87 ~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 87 KALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred hhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 777775 446677777777788888888888888887776543 5555555444433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.57 E-value=2.4e-07 Score=64.93 Aligned_cols=94 Identities=7% Similarity=-0.101 Sum_probs=83.8
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 047873 96 GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175 (464)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (464)
.....+..+.+.|++++|+..|+++++..+. ++.+|..+..++.+.|++++|...|++..+.. +.+..++..+...|.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 3455677888999999999999999998766 89999999999999999999999999998874 456888999999999
Q ss_pred hcCChhHHHHHHHHHh
Q 047873 176 KAKNLDEGFRLKSVME 191 (464)
Q Consensus 176 ~~~~~~~a~~~~~~~~ 191 (464)
..|++++|.+.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 9999999999998764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4.7e-07 Score=65.20 Aligned_cols=99 Identities=9% Similarity=-0.039 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLL 85 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 85 (464)
...+.-++..+...|++++|++.|.+++. ..|+. .++..+..+|.+.|++++|++.++++
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~-------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE-------------------LDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCcccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence 35677789999999999999999999984 34555 88999999999999999999999998
Q ss_pred HhCCCCCC------hhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 86 RKHYFRIP------ARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 86 ~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
...+.... ..+|..+...+...+++++|+..|++.+...
T Consensus 65 l~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 76531111 2355667777788889999999988877644
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=3.1e-07 Score=65.12 Aligned_cols=96 Identities=9% Similarity=-0.104 Sum_probs=63.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcC---ChhHHHHHHHHHH
Q 047873 11 STMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLG---FLDDAIQCFRLLR 86 (464)
Q Consensus 11 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 86 (464)
..+++.+...+++++|.+.|++++. ..|+. .++..++.++.+.+ ++++|+.+|+++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~-------------------~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l 63 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA-------------------AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------------------HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh-------------------hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3456666777777777777777773 34444 77777777776544 3445777777776
Q ss_pred hCCCCCC-hhcHHHHHHHHHcCCChhhHHHHHHHHHhcCC
Q 047873 87 KHYFRIP-ARGCRCLIDRMMRTNLPTVTLGFYLEILDYGY 125 (464)
Q Consensus 87 ~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 125 (464)
..+..|+ ..++..++.+|.+.|++++|+..|+++++..+
T Consensus 64 ~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCc
Confidence 6643322 23566677777777777777777777777553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.50 E-value=8.7e-07 Score=66.03 Aligned_cols=121 Identities=8% Similarity=-0.149 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCC---ChHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMG---SSASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
...+...+..+.+.|++.+|+..|.+++...... .......... +....+++.++.+|.+.|++++|++.++
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Nla~~~~~l~~~~~Al~~~~ 91 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK-----NIEISCNLNLATCYNKNKDYPKAIDHAS 91 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhh-----hHHHHHHhhHHHHHHHhcccchhhhhhh
Confidence 3467778889999999999999999998522111 0111000000 0011355667777777777777777777
Q ss_pred HHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHH
Q 047873 84 LLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNV 134 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (464)
.+...+ |.+..+|..++.++...|++++|+..|++.++..+. +..+...
T Consensus 92 ~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~ 140 (153)
T d2fbna1 92 KVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNS 140 (153)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred cccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 777665 446677777777777777777777777777776543 4444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.48 E-value=2e-06 Score=65.31 Aligned_cols=126 Identities=4% Similarity=-0.146 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRK 87 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 87 (464)
.+...+..+...|++++|++.|.+++...... .............|.. ..+..+..+|.+.|++++|+..|+++.+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 105 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS---RAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 105 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh---hhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence 45566788899999999999999987311000 0000000001122333 5667777888888888888888888887
Q ss_pred CCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 88 HYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
.+ |.+..+|..++.++...|++++|+..|+++++..+. +..+...+..+.
T Consensus 106 ~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~ 155 (169)
T d1ihga1 106 ID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 155 (169)
T ss_dssp TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 76 456777888888888888888888888888876554 555555554443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.47 E-value=8e-06 Score=61.77 Aligned_cols=130 Identities=14% Similarity=-0.039 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCC--hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047873 7 LHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGS--SASLFASILETRGTHLPGLVLDALMIVYVDLGFLDDAIQCFRL 84 (464)
Q Consensus 7 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (464)
+..+.-.+..+.+.|++.+|+..|.+++....... ..... .... .....+++.+..+|.+.|++++|+..++.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~-~~~~----~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~ 89 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKES-KASE----SFLLAAFLNLAMCYLKLREYTKAVECCDK 89 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHH-HHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhh-hhcc----hhHHHHHHhHHHHHHHhhhcccchhhhhh
Confidence 35567788999999999999999999884221110 00000 0000 00013456677778888888888888888
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 047873 85 LRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEG 143 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (464)
....+ |.+..++..++.++...|++++|...|.++++..+. +..+...+..+....+
T Consensus 90 al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 90 ALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHH
T ss_pred hhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 87775 556777777888888888888888888888876543 5555555544444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.44 E-value=0.0003 Score=58.84 Aligned_cols=44 Identities=9% Similarity=0.031 Sum_probs=23.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047873 357 KNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLL 403 (464)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 403 (464)
+.++..-....++...+.+ +....+++...|...++++.-...+
T Consensus 260 k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 260 KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 3444444445555544432 3356666677777777655443333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=9.3e-07 Score=62.61 Aligned_cols=94 Identities=12% Similarity=-0.049 Sum_probs=69.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCh---hhHHHHHHHHHhcCCCCC-hhhHHHHHHHH
Q 047873 64 ALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLP---TVTLGFYLEILDYGYSPS-VYVFNVLMHKL 139 (464)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 139 (464)
.+++.+...+++++|.+.|++....+ |.+..++..+..++.+.++. ++|+.++++++...+.|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46667777888888888888888876 55677777788777765544 458888888877554433 33666778888
Q ss_pred HhcCChhhHHHHHHHHhhC
Q 047873 140 CKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~ 158 (464)
.+.|++++|.+.|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 8888888888888888775
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.31 E-value=1.2e-05 Score=61.16 Aligned_cols=27 Identities=22% Similarity=0.004 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047873 9 AYSTMVHFLVAHKMHSQARDLLHLIVS 35 (464)
Q Consensus 9 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 35 (464)
++...+......|++++|.+.|.+++.
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~ 39 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALR 39 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345566788899999999999999984
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=8e-06 Score=61.84 Aligned_cols=111 Identities=7% Similarity=-0.081 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+...+..+.+.|++++|+..|++............ ..-......+ ...+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~--------------~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--------------NEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC--------------SHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc--------------hHHHhhhchh-------HHHHHHHHHHHHH
Confidence 344567788899999999999998776421111000 0000000000 1123444555666
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
+.|++++|+..++.....+ +.+...+..+..+|...|++++|...|+...+.
T Consensus 74 k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 6666666666666665543 334555666666666666666666666666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=5.8e-06 Score=59.23 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCC-C-----hhhHHHH
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSP-S-----VYVFNVL 135 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-----~~~~~~l 135 (464)
+-.+...|.+.|++++|++.|.+..+.+ |.+..++..+..++.+.|++++|++.++++++..+.. . ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3346667777888888888888877775 4456677777777888888888888887776543221 1 1244455
Q ss_pred HHHHHhcCChhhHHHHHHHHhh
Q 047873 136 MHKLCKEGKIKDAQMVFDEFGK 157 (464)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~ 157 (464)
...+...+++++|.+.|+....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 5566666777777777766554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=0.0012 Score=55.13 Aligned_cols=282 Identities=13% Similarity=0.061 Sum_probs=127.8
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 047873 96 GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175 (464)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (464)
-...++..|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+++.+.. +..+|..+...+.
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp -------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 33445555556666666666665321 23445555666666666655554331 3445555555555
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccC
Q 047873 176 KAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGD 255 (464)
Q Consensus 176 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 255 (464)
+......+ .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.+.
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~------ 148 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP------ 148 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH------
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh------
Confidence 55444322 1112222234444455666666666666666666655432 12345555666666665432
Q ss_pred HHHHHHHHHHHHhCCCCCC--------HHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChH
Q 047873 256 MKEARKIVDEMCTNGLNPD--------KITYTILLDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVV 327 (464)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (464)
++..+.++.... ...+. ...|..++-.|.+.|+++.|..+. .++ .++..-...++..+.+..+.+
T Consensus 149 -~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e 221 (336)
T d1b89a_ 149 -QKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVE 221 (336)
T ss_dssp -HHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred -HHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChH
Confidence 222222222111 00000 001222333344444444433322 111 112222223334444445544
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047873 328 EAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTML 407 (464)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 407 (464)
...++....... .| ...+.++......-+.... +..+.+.+++.-...+++...
T Consensus 222 ~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~----------------------V~~~~k~~~l~li~p~Le~v~ 275 (336)
T d1b89a_ 222 LYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRA----------------------VNYFSKVKQLPLVKPYLRSVQ 275 (336)
T ss_dssp HHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHH----------------------HHHHHHTTCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHH----------------------HHHHHhcCCcHHHHHHHHHHH
Confidence 444444443332 12 2334444444433333333 333445556666667776665
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 047873 408 DLGVVPDDITYNILLEGHCKHGNPEDFDKLQSE 440 (464)
Q Consensus 408 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 440 (464)
+.| +..+.+++...|...++++.-++.+++
T Consensus 276 ~~n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 276 NHN---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp TTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcC---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 544 456888999999999998877776665
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=6e-07 Score=81.45 Aligned_cols=229 Identities=10% Similarity=-0.110 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHH
Q 047873 24 SQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLID 102 (464)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 102 (464)
-+|.+.|++++ ...|+. .++..+..+|...|++++| |+++...++. .....+ ...
T Consensus 3 ~eA~q~~~qA~-------------------~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~-~e~ 58 (497)
T d1ya0a1 3 LQSAQYLRQAE-------------------VLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKK-VEQ 58 (497)
T ss_dssp HHHHHHHHHHH-------------------HHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHT-HHH
T ss_pred HHHHHHHHHHH-------------------HcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHh-HHH
Confidence 47888888887 345555 6777778888888888776 6666554311 011111 111
Q ss_pred HHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH--HHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCh
Q 047873 103 RMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH--KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNL 180 (464)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (464)
.+. ...+..+.+.++...+....++..-...... .....+.++.++..+....... +++...+..+...+.+.|+.
T Consensus 59 ~Lw-~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~ 136 (497)
T d1ya0a1 59 DLW-NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHT 136 (497)
T ss_dssp HHH-HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred HHH-HHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCH
Confidence 111 1124556667776665443334332222221 2223445555555444433322 33456677777888888888
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHH
Q 047873 181 DEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEAR 260 (464)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~ 260 (464)
+.|...+...... . ...++..+...+...|++++|...|.+..+..+ -+...|+.+...+...|+. .+|+
T Consensus 137 ~~A~~~~~~al~~--~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~------~~A~ 206 (497)
T d1ya0a1 137 SAIVKPQSSSCSY--I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDH------LTTI 206 (497)
T ss_dssp ------CCHHHHH--H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCH------HHHH
T ss_pred HHHHHHHHHHhCC--C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCH------HHHH
Confidence 8888877665532 1 234667788889999999999999999888743 3678899999999888876 5899
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhCC
Q 047873 261 KIVDEMCTNGLNPDKITYTILLDGFCKEG 289 (464)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 289 (464)
..|.+..... +|-..++..|...+.+..
T Consensus 207 ~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 207 FYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 9999888764 456777787877766543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.05 E-value=1.8e-06 Score=70.42 Aligned_cols=122 Identities=9% Similarity=-0.081 Sum_probs=79.4
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPAR 95 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 95 (464)
..+.|++++|++.|++.++ ..|++ ..+..++..|+..|++++|++.|+...+.. |-...
T Consensus 6 aL~~G~l~eAl~~l~~al~-------------------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~ 65 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK-------------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLP 65 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH-------------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHH
T ss_pred HHHCCCHHHHHHHHHHHHH-------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHH
Confidence 4468999999999999984 45555 999999999999999999999999988875 33344
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 047873 96 GCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKR 158 (464)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (464)
.+..+...+...+..+++..-.......+.+++...+......+...|+.++|.+.++++.+.
T Consensus 66 ~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 66 GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 444444444333333322221111111111222333444556677889999999998887665
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.04 E-value=8.4e-05 Score=54.86 Aligned_cols=112 Identities=9% Similarity=-0.110 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+..-+..+.+.|++++|+..|+.....-...... .+......... ....++..+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~--------------~~~~~~~~~~~------~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW--------------DDQILLDKKKN------IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC--------------CCHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh--------------hhHHHHHhhhh------HHHHHHhhHHHHHH
Confidence 34455667889999999999999887642111100 00000000000 01224445555566
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
+.|++++|++.++.....+ +.+..+|..+..++...|++++|...|+...+.
T Consensus 79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666655543 334555666666666666666666666665554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.02 E-value=2.9e-05 Score=58.63 Aligned_cols=110 Identities=7% Similarity=-0.092 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 047873 63 DALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKE 142 (464)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (464)
......+...|++++|++.|.+..... + ........... .... +.....+..+..++.+.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~-~-----------~~~~~~~~~~~-------~~~~-~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYV-E-----------GSRAAAEDADG-------AKLQ-PVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-H-----------HHHHHSCHHHH-------GGGH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh-h-----------hhhhhhhhHHH-------HHhC-hhhHHHHHHHHHHHHhh
Confidence 345667788999999999998765321 0 00000000000 0000 01233444455555566
Q ss_pred CChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 143 GKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
|++++|+..++...+.. +.+...|..+..++...|+++.|...|+...+.
T Consensus 91 ~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 91 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66666666666555543 234455555555666666666666666655554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.00 E-value=1.3e-05 Score=58.67 Aligned_cols=73 Identities=7% Similarity=-0.079 Sum_probs=53.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC----------CChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 047873 69 YVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRT----------NLPTVTLGFYLEILDYGYSPSVYVFNVLMHK 138 (464)
Q Consensus 69 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (464)
|-+.+.+++|++.|+...+.+ |.+..++..+..++... +.+++|+..|+++++..+. +..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence 456677899999999998887 56778888888777644 3446677778887776655 67777777777
Q ss_pred HHhcC
Q 047873 139 LCKEG 143 (464)
Q Consensus 139 ~~~~~ 143 (464)
|...|
T Consensus 85 y~~~g 89 (145)
T d1zu2a1 85 YTSFA 89 (145)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 66554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.99 E-value=9.3e-06 Score=59.51 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=66.1
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhc----------CChhHHHHHHHHH
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDL----------GFLDDAIQCFRLL 85 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~----------g~~~~A~~~~~~~ 85 (464)
|-+.+.+++|++.|++++ ...|++ .++..+..++... +.+++|+..|++.
T Consensus 7 ~~r~~~fe~A~~~~e~al-------------------~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kA 67 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTY-------------------KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA 67 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHH-------------------hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 445667999999999998 445666 8888888888744 4567899999999
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCC-----------hhhHHHHHHHHHhcC
Q 047873 86 RKHYFRIPARGCRCLIDRMMRTNL-----------PTVTLGFYLEILDYG 124 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~ 124 (464)
.+.+ |.+..+|..++.++...|+ +++|.+.|++.++..
T Consensus 68 l~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 68 LLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 9887 5577888888888876543 456666666666544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.98 E-value=4.9e-05 Score=57.26 Aligned_cols=108 Identities=9% Similarity=-0.048 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKH---YFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMH 137 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 137 (464)
.+...+..+.+.|++++|+..|.+.... ....+.. . ......+ ...+|+.+..
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~----------------~-~~~~~~~-------~~~~~~Nla~ 72 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK----------------E-SKASESF-------LLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH----------------H-HHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh----------------h-hhhcchh-------HHHHHHhHHH
Confidence 4556777899999999999999886542 1111100 0 0000000 1223444555
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047873 138 KLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEGS 193 (464)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 193 (464)
+|.+.|++++|+..++.....+ +.+..+|..+..++...|++++|...|+.+...
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666666666666666665543 344555666666666666666666666666554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.97 E-value=6.5e-05 Score=56.96 Aligned_cols=128 Identities=9% Similarity=0.041 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 047873 61 VLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLC 140 (464)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (464)
.+..........|++++|.+.|....... +-+.. .......-+...-..+.. .....+..+...+.
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~-rG~~l---------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREW-RGPVL---------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CSSTT---------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-ccccc---------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44556677889999999999999988763 11110 000111111111111111 13456677888888
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHHHHH
Q 047873 141 KEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCKAKNLDEGFRLKSVMEG-----SGMRPDVYTYS 203 (464)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 203 (464)
+.|++++|...++.+.... +.+...|..++.++...|+..+|++.|+++.+ .|+.|+..+-.
T Consensus 79 ~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 8899999999888888764 55778888889999999999999888888743 47888876543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=1.2e-05 Score=72.69 Aligned_cols=111 Identities=10% Similarity=-0.073 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 047873 60 LVLDALMIVYVDLGFLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKL 139 (464)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (464)
..+..+...+.+.|+.++|...+....... ...++..++..+...|++++|...|+++.+..+. +...|+.+...+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 445555555555555555555554443321 1234455555555566666666666665555443 455555566666
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 047873 140 CKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHC 175 (464)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (464)
...|+..+|...|.+..... +|-..++..|...+.
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 66666666665555555443 334444555544443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=0.00011 Score=49.04 Aligned_cols=83 Identities=17% Similarity=0.037 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 047873 5 LTLHAYSTMVHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPG-LVLDALMIVYVDLGFLDDAIQCFR 83 (464)
Q Consensus 5 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 83 (464)
-|+..+.-++..+.+.|++++|++.|++++.... ......++. .++..+..+|.+.|++++|++.++
T Consensus 3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~------------~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~ 70 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLD------------EGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTK 70 (95)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------TTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHh------------hhhccCccHHHHHHHHhhHHHhcCChHHHHHHHH
Confidence 4677888999999999999999999999984211 011223333 788889999999999999999999
Q ss_pred HHHhCCCCCChhcHHHH
Q 047873 84 LLRKHYFRIPARGCRCL 100 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l 100 (464)
++.+.. |-+..++..+
T Consensus 71 ~aL~l~-P~~~~a~~Nl 86 (95)
T d1tjca_ 71 KLLELD-PEHQRANGNL 86 (95)
T ss_dssp HHHHHC-TTCHHHHHHH
T ss_pred HHHHhC-cCCHHHHHHH
Confidence 998886 3344554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.83 E-value=1.5e-05 Score=64.78 Aligned_cols=121 Identities=11% Similarity=0.024 Sum_probs=62.1
Q ss_pred HcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCC-cccHHHHHHHHHhcCChhHH
Q 047873 105 MRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHAT-AVSFNTLINGHCKAKNLDEG 183 (464)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 183 (464)
.+.|++++|+..+++.++..+. +...+..+...++..|++++|.+.|+...+. .|+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 3456666666666666665554 6666666666666666666666666666554 222 22233333332222222221
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047873 184 FRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCER 228 (464)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 228 (464)
..-.......+.+++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111110001111222333444456667778888888888777665
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.80 E-value=3.3e-05 Score=57.41 Aligned_cols=108 Identities=6% Similarity=-0.015 Sum_probs=67.5
Q ss_pred CHHHHHHH--HHHHHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCC--CC-ChhhHHHHHHHHHhcCChhHHHH
Q 047873 6 TLHAYSTM--VHFLVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGT--HL-PGLVLDALMIVYVDLGFLDDAIQ 80 (464)
Q Consensus 6 ~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~ 80 (464)
...+|..+ +..+...|++++|++.|++++.-....+. .... .+ ....|+.+..+|...|++++|++
T Consensus 6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~---------~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~ 76 (156)
T d2hr2a1 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP---------EEAFDHAGFDAFCHAGLAEALAGLRSFDEALH 76 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT---------TSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhh---------hhhcccchhHHHHHHHHHHHHHHcCccchhhH
Confidence 35677777 66777889999999999999842110000 0000 00 12567888888999999999998
Q ss_pred HHHHHHhCC-----CCCC-----hhcHHHHHHHHHcCCChhhHHHHHHHHHh
Q 047873 81 CFRLLRKHY-----FRIP-----ARGCRCLIDRMMRTNLPTVTLGFYLEILD 122 (464)
Q Consensus 81 ~~~~~~~~~-----~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 122 (464)
.+++..... ..++ ..++..+..++...|++++|+..|++.++
T Consensus 77 ~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 77 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888866421 0111 12345556666666677666666666553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.34 E-value=0.0022 Score=47.04 Aligned_cols=92 Identities=10% Similarity=0.015 Sum_probs=57.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHCCC-CC----------CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCcC-
Q 047873 317 ISGFCRGGKVVEAERMLREMLKVGL-KP----------DDATYTMVIDCFCKNGDTKTGFRLLKEMRSD-----GHLPA- 379 (464)
Q Consensus 317 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~- 379 (464)
...+.+.|++++|+..|++.++... .| ....|+.+..+|.+.|++++|...+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3344555667777777766654210 01 1245667777777778877777777776542 11111
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 380 ----VETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 380 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
...+..+..+|...|++++|.+.|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456677888888888888888877663
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.00087 Score=44.38 Aligned_cols=73 Identities=10% Similarity=-0.144 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-----CC-ChhcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 047873 62 LDALMIVYVDLGFLDDAIQCFRLLRKHYF-----RI-PARGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVL 135 (464)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (464)
...++..+.+.|++++|+..|++..+... .+ ...++..+..++.+.|++++|+..++++++..+. +..+++.+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~~Nl 86 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 34567777888888888888887654310 11 1345667777777888888888888887776654 45444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.91 E-value=0.013 Score=41.24 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCChhhHHHHHHHHHhcC
Q 047873 74 FLDDAIQCFRLLRKHYFRIPARGCRCLIDRMMRTNLPTVTLGFYLEILDYG 124 (464)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 124 (464)
++++|+++|++..+.+ +...+..+.. ....+.++|+.++++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc
Confidence 5666777777666554 2222222221 22344555555555555443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.16 Score=44.22 Aligned_cols=210 Identities=10% Similarity=-0.032 Sum_probs=118.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhCCChH
Q 047873 213 NRLDDAELLLHEMCERGLTPNDVIFTTLIDGHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTILLDGFCKEGDLE 292 (464)
Q Consensus 213 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 292 (464)
.+.+.+..++......... +...+..+-......-.. .+....+...+......+. +.......+......+++.
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~ 302 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMG--NDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRR 302 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCS--TTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHH--cCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChH
Confidence 5677788888777654322 323333222222221100 1112467777766665532 3344444555566778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh-HHHHHHHHHH
Q 047873 293 SALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDT-KTGFRLLKEM 371 (464)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 371 (464)
.+...+..+... ......-.--+..++...|+.+.|...|..+... ++ |-.++.+- +.|.. .-...
T Consensus 303 ~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~~~~~----- 369 (450)
T d1qsaa1 303 GLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYELKID----- 369 (450)
T ss_dssp HHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCCCCCC-----
T ss_pred HHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCCCCcC-----
Confidence 888888776432 1123344445667788889999999888887642 32 33333221 12211 00000
Q ss_pred HhCCCCcC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 047873 372 RSDGHLPA-V---ETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILLEGHCKHGNPEDFDKLQSEKGLV 444 (464)
Q Consensus 372 ~~~~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 444 (464)
.....+. . ..-..-+..+...|+...|...|..+... .+......+.....+.|.++.|+....+.+..
T Consensus 370 -~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~~ 442 (450)
T d1qsaa1 370 -KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKLW 442 (450)
T ss_dssp -CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCT
T ss_pred -CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHcc
Confidence 0000000 0 00112356677899999999999988753 35666777788888999999999888775543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.17 Score=44.04 Aligned_cols=255 Identities=12% Similarity=0.030 Sum_probs=115.5
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 047873 97 CRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGLHATAVSFNTLINGHCK 176 (464)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (464)
....+..+.+.+++...+..+. ..+.+...-.....+....|+.+.|.+.+..+-..| ...+..+..+...+..
T Consensus 75 r~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~ 148 (450)
T d1qsaa1 75 QSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRA 148 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHh
Confidence 3444556666776655443321 122345555566667777788777777766665443 2234444555554444
Q ss_pred cCChhHHH--HHHHHHhhCC-----------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047873 177 AKNLDEGF--RLKSVMEGSG-----------MRPD-VYTYSALINGLCKENRLDDAELLLHEMCERGLTPNDVIFTTLID 242 (464)
Q Consensus 177 ~~~~~~a~--~~~~~~~~~~-----------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 242 (464)
.|.+.... +-+..+...| +.++ .......+.... +...+.... ... .++......+..
T Consensus 149 ~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~---~~~--~~~~~~~~~~~~ 220 (450)
T d1qsaa1 149 SGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFA---RTT--GATDFTRQMAAV 220 (450)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHH---HHS--CCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHH---hcC--CCChhhhHHHHH
Confidence 44332211 1122221111 0111 111112222111 111111111 111 122333333333
Q ss_pred HHHhcCCcccccCHHHHHHHHHHHHhCCCCCCHHhHHHH----HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047873 243 GHCKNGRIDMAGDMKEARKIVDEMCTNGLNPDKITYTIL----LDGFCKEGDLESALDIRKEMIKRGIELDNVAFTALIS 318 (464)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (464)
++.+.... +.+.+..++......... +...+..+ .......+..+.+...+......+. +.....-.+.
T Consensus 221 ~l~rla~~----d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~ 293 (450)
T d1qsaa1 221 AFASVARQ----DAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVR 293 (450)
T ss_dssp HHHHHHHH----CHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHH
T ss_pred HHHHHhcc----ChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHH
Confidence 33332211 235666666666543221 22112111 1222234556666666666655433 3333344444
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 319 GFCRGGKVVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 319 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
.....+++..+...+..+.... .-...-.--+..++...|+.+.|...|..+..
T Consensus 294 ~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 294 MALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 4556677777777776654321 11233344566777777887777777777764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.64 E-value=0.019 Score=38.66 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=76.4
Q ss_pred HHhCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCh
Q 047873 17 LVAHKMHSQARDLLHLIVSKKGMGSSASLFASILETRGTHLPGLVLDALMIV--YVDLGFLDDAIQCFRLLRKHYFRIPA 94 (464)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~ 94 (464)
+.-.|..++..++..+...+....++..+.=.++.+....--..++..+... ...+++.......+-.+- ...
T Consensus 12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n-----~~s 86 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN-----TLN 86 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-----CCC
T ss_pred HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhc-----chH
Confidence 4458999999999999887655555555555555431110000222222221 234445554444443321 123
Q ss_pred hcHHHHHHHHHcCCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 047873 95 RGCRCLIDRMMRTNLPTVTLGFYLEILDYGYSPSVYVFNVLMHKLCKEGKIKDAQMVFDEFGKRGL 160 (464)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (464)
+.....+..+.++|+-+...++++.+.+.+ ++++...-.+..+|.+.|...++-+++.+..++|+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 344555566666666666666666666533 34666666666677777777777777666666654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.49 E-value=0.07 Score=37.28 Aligned_cols=81 Identities=10% Similarity=0.010 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCC
Q 047873 324 GKVVEAERMLREMLKVGLKPDDATYTMVIDCFCK----NGDTKTGFRLLKEMRSDGHLPAVETYNALMNGLCK----HGQ 395 (464)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 395 (464)
.+.++|..++++..+.| +......|...|.. ..+.++|.++|++..+.+ ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555555555555543 23333334444432 334566666666666543 33334444444443 345
Q ss_pred HHHHHHHHHHHHhCC
Q 047873 396 LKNANMLLDTMLDLG 410 (464)
Q Consensus 396 ~~~a~~~~~~~~~~~ 410 (464)
..+|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 566666666655544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.27 E-value=0.16 Score=34.38 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047873 362 KTGFRLLKEMRSDGHLPAV-ETYNALMNGLCKHGQLKNANMLLDTMLD 408 (464)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 408 (464)
++++.+++++.+.+ +.+. ..+-.+.-+|.+.|++++|.+.++.+++
T Consensus 55 ~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 55 RLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44555555544421 1121 2333344445555555555555555554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.15 E-value=0.47 Score=31.85 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=55.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047873 163 TAVSFNTLINGHCKAKNLDEGFRLKSVMEGSGMRPDVYTYSALINGLCKENRLDDAELLLHEMCERGLT 231 (464)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 231 (464)
+...+...++....+|.-+.-.++++.+.+.+ ++++...-.+..+|.+.|+..++-+++.+.-+.|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 34456667778888888899899999877754 788888889999999999999999999999988764
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.81 E-value=0.66 Score=29.41 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047873 326 VVEAERMLREMLKVGLKPDDATYTMVIDCFCKNGDTKTGFRLLKEMRS 373 (464)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (464)
.-+...-+..+...++.|++.+..+.+++|.+.+++..|.++|+.+..
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444444445555555555555555555555555544443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.16 E-value=0.77 Score=29.11 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047873 360 DTKTGFRLLKEMRSDGHLPAVETYNALMNGLCKHGQLKNANMLLDTMLDLGVVPDDITYNILL 422 (464)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 422 (464)
+.=+..+-++.+......|++....+.+++|.+.+++..|.++++-.+.. ..++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 34455555666666667778888888888888888888888888776642 223444555543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.66 E-value=1.2 Score=29.91 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=41.7
Q ss_pred CCHHhHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 047873 273 PDKITYTILLDGFCKEGD---LESALDIRKEMIKRGIELDNVAFTALISGFCRGGKVVEAERMLREMLKV 339 (464)
Q Consensus 273 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (464)
++..+--....++.++.+ .++++.+++.+.+.+..-....+-.+..+|.+.|++++|...++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 444454455555665543 4567777777776542211345566667777778888888877777775
|