Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 94
PRK05592 146
PRK05592, rplO, 50S ribosomal protein L15; Reviewe
2e-08 TIGR01071 145
TIGR01071, rplO_bact, ribosomal protein L15, bacte
8e-08 COG0200 152
COG0200, RplO, Ribosomal protein L15 [Translation,
3e-05 pfam00828 122
pfam00828, Ribosomal_L18e, Ribosomal protein L18e/
2e-04
>gnl|CDD|235523 PRK05592, rplO, 50S ribosomal protein L15; Reviewed
Back Hide alignment and domain information
Score = 47.8 bits (115), Expect = 2e-08
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 2 VGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSR 61
V LG + K + +T++ LK AG I K I GV+++G G ++ + ++ +
Sbjct: 77 VNLGDLN------KFEEGTEVTLEALKAAGLIRKNI-KGVKVLGNG--ELTKKLTVKAHK 127
Query: 62 VTVRAKAAVEAAGGSV 77
+ AK A+EAAGG V
Sbjct: 128 FSKSAKEAIEAAGGKV 143
>gnl|CDD|233260 TIGR01071, rplO_bact, ribosomal protein L15, bacterial/organelle
Back Show alignment and domain information
Score = 46.5 bits (111), Expect = 8e-08
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 8/77 (10%)
Query: 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVS 60
V LGK+A L G E++T++TLK+ G I K+I+ V+++G G K+ P+ ++
Sbjct: 76 EVNLGKLAKLFPNG-----EVVTLETLKEKGLITKKIK-FVKVLGNG--KLTKPLTVKAH 127
Query: 61 RVTVRAKAAVEAAGGSV 77
RV+ AKAA+EAAGGSV
Sbjct: 128 RVSKSAKAAIEAAGGSV 144
[Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 145
>gnl|CDD|223278 COG0200, RplO, Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 39.6 bits (93), Expect = 3e-05
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Query: 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVS 60
V LGK+A L+ G+ +T+ +LK AG I K ++D V+++G G K+ + ++V
Sbjct: 79 VVNLGKLAELLPEGEE-----VTLASLKAAGVIRK-LKDLVKVLGNG--KLTKAVPVKVK 130
Query: 61 -RVTVRAKAAVEAAGGSV 77
+ + A +EAAGG V
Sbjct: 131 AKASKSAIEKIEAAGGKV 148
>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15
Back Show alignment and domain information
Score = 37.2 bits (87), Expect = 2e-04
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 11 INAGKIDSHEL-----ITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVR 65
+N K+D L + +TL G + D V+++G G P+ ++ + +
Sbjct: 54 VNLSKLDRKMLKDGEEVDGETLVVVGTVT----DDVKVLGNGELTK--PLTVKALKFSKS 107
Query: 66 AKAAVEAAGGSV 77
A+ +E AGG V
Sbjct: 108 AREKIEKAGGEV 119
This family includes eukaryotic L18 as well as prokaryotic L15. Length = 122
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
94
KOG0846 274
consensus Mitochondrial/chloroplast ribosomal prot
99.92 PRK05592 146
rplO 50S ribosomal protein L15; Reviewed
99.79 TIGR01071 145
rplO_bact ribosomal protein L15, bacterial/organel
99.78 PF00828 129
Ribosomal_L18e: Ribosomal protein L18e/L15; InterP
99.71 COG0200 152
RplO Ribosomal protein L15 [Translation, ribosomal
99.63 PRK06419 148
rpl15p 50S ribosomal protein L15P; Reviewed
99.63 PTZ00160 147
60S ribosomal protein L27a; Provisional
99.5 PRK04005 111
50S ribosomal protein L18e; Provisional
99.45 COG1727 122
RPL18A Ribosomal protein L18E [Translation, riboso
98.98 PTZ00469 187
60S ribosomal subunit protein L18; Provisional
98.62 PTZ00195 198
60S ribosomal protein L18; Provisional
98.49 KOG1742 147
consensus 60s ribosomal protein L15/L27 [Translati
98.43 KOG1714 188
consensus 60s ribosomal protein L18 [Translation,
92.17 PF08734 91
GYD: GYD domain; InterPro: IPR014845 These protein
88.72
>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis]
Back Hide alignment and domain information
Probab=99.92 E-value=2.4e-25 Score=165.62 Aligned_cols=93 Identities=49% Similarity=0.726 Sum_probs=87.8
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCC-ccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGA-IGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRR 79 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~-i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~ 79 (94)
+++|.+||.||+.|+|++.++|||++|++.|+ ..+.+.++|+|.+.|+.+++.+|+|||++||..|+++||+|||+|++
T Consensus 95 pl~L~rlq~lID~grid~~q~Idm~tL~~~g~i~p~~~eyGv~L~~~G~d~~~~~i~iEvs~aS~~AiaaIEkaGG~vtt 174 (274)
T KOG0846|consen 95 PLSLGRLQKLIDTGRIDPSQPIDMKTLKDSGLINPKGREYGVQLTADGADEFKAKINIEVSRASVQAIAAIEKAGGSVTT 174 (274)
T ss_pred cccHHHHHHHHHhcCCCccCceeHHHHHhccCCCccccccCceeeccCCccccceEEEEehhhhHHHHHHHHhcCCeEEE
Confidence 58999999999999999999999999999994 44455679999999988999999999999999999999999999999
Q ss_pred EEecHhhhhhhcCC
Q 047908 80 VHYNKLGLRALLKP 93 (94)
Q Consensus 80 ~~~~~~~l~~~~~p 93 (94)
+|||++|||+||+|
T Consensus 175 ~yy~p~~Lra~lnP 188 (274)
T KOG0846|consen 175 AYYDPLSLRAHLNP 188 (274)
T ss_pred EEEcchhhhhhcCc
Confidence 99999999999999
>PRK05592 rplO 50S ribosomal protein L15; Reviewed
Back Show alignment and domain information
Probab=99.79 E-value=3.8e-19 Score=123.56 Aligned_cols=70 Identities=33% Similarity=0.569 Sum_probs=62.7
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRR 79 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~ 79 (94)
+|||++|+++ +++++||+++|++.|+|+.+ .++|||||+| +|+++|+|++++||++|+++||+|||+|++
T Consensus 76 ~VNL~~L~~~------~~~~~I~~~~L~~~gli~~~-~~~vKvLg~G--~l~~~i~I~a~~~S~sA~e~IE~aGG~v~~ 145 (146)
T PRK05592 76 VVNLGDLNKF------EEGTEVTLEALKAAGLIRKN-IKGVKVLGNG--ELTKKLTVKAHKFSKSAKEAIEAAGGKVEE 145 (146)
T ss_pred EEeHHHhhcc------CCCCeECHHHHHHCCcccCC-CcceEEEecC--ccccCEEEEEEccCHHHHHHHHHcCCEEEe
Confidence 5899999863 33468999999999999865 3589999999 999999999999999999999999999975
>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle
Back Show alignment and domain information
Probab=99.78 E-value=5.1e-19 Score=122.58 Aligned_cols=70 Identities=47% Similarity=0.723 Sum_probs=63.7
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVR 78 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~ 78 (94)
+|||++||++++++ .+||+++|.+.++|+.. ..++||||+| +|++||+|++++||++|+++||+|||+|+
T Consensus 76 ~VNL~~L~~~~~~g-----~~i~~~~L~~~gli~~~-~~~vKvLg~G--~l~~~l~I~a~~~S~sA~ekIE~aGG~v~ 145 (145)
T TIGR01071 76 EVNLGKLAKLFPNG-----EVVTLETLKEKGLITKK-IKFVKVLGNG--KLTKPLTVKAHRVSKSAKAAIEAAGGSVE 145 (145)
T ss_pred EEEHHHHhhhhhcC-----CEecHHHHhhCccCcCC-CCceEEeCCC--CcCcCEEEEEEEECHHHHHHHHHcCCEEC
Confidence 58999999998876 38999999999999854 3579999999 99999999999999999999999999984
>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms
Back Show alignment and domain information
Probab=99.71 E-value=7.9e-18 Score=113.78 Aligned_cols=72 Identities=40% Similarity=0.595 Sum_probs=63.8
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRR 79 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~ 79 (94)
+|||++|+++++..+.+.. +++.+.+.+.+++ ..++||||+| ++++|++|++++||++|+++||+|||+|++
T Consensus 57 ~vnL~~L~~~i~~~~~~~~-~~~~~~~~~~~~~----~~~~KvLg~G--~l~~~l~I~a~~~S~~A~ekIe~aGG~v~~ 128 (129)
T PF00828_consen 57 PVNLSKLQELIEKLKIDGT-EIDGKILVDAGLI----KGYVKVLGKG--ELTKPLTIKAHRFSKSAKEKIEAAGGEVVT 128 (129)
T ss_dssp EEEHHHHHHHTTTSSSSSC-ECTTSEEEECCEE----SSEEEEESSS--SSSSSEEEEESEETHHHHHHHHHTSEEEEE
T ss_pred eeeHHHHHHHHHhcccccc-ccCCceeeecccc----ccceeeeccC--CcccceEEEEEecCHHHHHHHHHcCCEEEe
Confidence 5899999999987775544 6788888888887 2589999999 999999999999999999999999999986
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.63 E-value=6.1e-16 Score=108.32 Aligned_cols=73 Identities=37% Similarity=0.588 Sum_probs=64.1
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEE-ecCHHHHHHHHHcCCEEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVS-RVTVRAKAAVEAAGGSVRR 79 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~-~~S~~A~~~Ie~aGG~v~~ 79 (94)
+||+++|+.+++++. ++|+++|.+.++|... ..++||||+| +|++++.++++ .||++|+++||+|||+|++
T Consensus 79 ~vn~~~l~~~~~~~~-----~v~~~~l~~~~~i~~~-~~~vKvLg~G--~l~~~~~~~v~a~~S~~A~ekIe~aGG~v~~ 150 (152)
T COG0200 79 VVNLGKLAELLPEGE-----EVTLASLKAAGVIRKL-KDLVKVLGNG--KLTKAVPVKVKAKASKSAIEKIEAAGGKVEL 150 (152)
T ss_pred EEEHHHhhhhccccc-----cccHHHHhhCCeEecc-ccccEEeccC--eeccceeEEEEeeeCHHHHHHHHHcCCEEEe
Confidence 589999999876664 8999999999999875 4679999999 99977777777 9999999999999999998
Q ss_pred EE
Q 047908 80 VH 81 (94)
Q Consensus 80 ~~ 81 (94)
++
T Consensus 151 ~~ 152 (152)
T COG0200 151 IE 152 (152)
T ss_pred cC
Confidence 64
>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed
Back Show alignment and domain information
Probab=99.63 E-value=5.8e-16 Score=107.83 Aligned_cols=67 Identities=22% Similarity=0.468 Sum_probs=52.6
Q ss_pred CcchhhHHhHH----HcCCCCCCC---ccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHc
Q 047908 1 PVGLGKIAYLI----NAGKIDSHE---LITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAA 73 (94)
Q Consensus 1 ~iNL~~L~~~~----~~g~i~~~~---~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~a 73 (94)
+|||++||+++ +.|.++..+ +||+ .+ ..++||||+| ++++|++|+|+.||++|+++||+|
T Consensus 72 ~INL~~L~~l~~~l~~~g~i~~~~~~~vid~---~~--------~g~~KVLG~G--~l~~pl~Vka~~fS~~A~ekIe~a 138 (148)
T PRK06419 72 TINVGELDELADLLKAEGKAEEEDGKIVVDL---TE--------LGYDKVLGGG--KVTRPLVIKADAFSEKAIEKIEAA 138 (148)
T ss_pred eEEHHHHHHhHHHHHHCCcccccCCcceeee---cc--------CCceEEeCCC--ccCcCEEEEEeccCHHHHHHHHHc
Confidence 58999999987 345443322 2222 11 1378999999 999999999999999999999999
Q ss_pred CCEEEEE
Q 047908 74 GGSVRRV 80 (94)
Q Consensus 74 GG~v~~~ 80 (94)
||+|+++
T Consensus 139 GG~v~l~ 145 (148)
T PRK06419 139 GGEVVLS 145 (148)
T ss_pred CCEEEEe
Confidence 9999875
>PTZ00160 60S ribosomal protein L27a; Provisional
Back Show alignment and domain information
Probab=99.50 E-value=2.2e-14 Score=99.98 Aligned_cols=70 Identities=17% Similarity=0.352 Sum_probs=51.4
Q ss_pred CcchhhHHhHHHcC----CCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccc-cccEEEEEEecCHHHHHHHHHcCC
Q 047908 1 PVGLGKIAYLINAG----KIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKI-KWPIHLEVSRVTVRAKAAVEAAGG 75 (94)
Q Consensus 1 ~iNL~~L~~~~~~g----~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l-~~~i~I~~~~~S~~A~~~Ie~aGG 75 (94)
+|||++||+++++- .++..+....-+|.+.| ++||||+| ++ ++|++|+++.||++|+++||++||
T Consensus 72 ~INl~~L~~lv~~~~~~~~a~~~~~~~vIDl~~~g--------~~KVLG~G--~l~~~~v~Vka~~~Sk~A~ekIe~aGG 141 (147)
T PTZ00160 72 TINVDKLWSLVPEETRYKYAKKGDKAPVIDVTKAG--------YFKVLGKG--HLPKQPVIVKARYFSKKAEKKIKAVGG 141 (147)
T ss_pred eeEHHHHHHHhHHHHHHhhhhccCCceEEEeeccC--------ceEEecCC--eEcCccEEEEEeecCHHHHHHHHHcCC
Confidence 48999999998641 11111111112222222 68999999 99 779999999999999999999999
Q ss_pred EEEEE
Q 047908 76 SVRRV 80 (94)
Q Consensus 76 ~v~~~ 80 (94)
+|+++
T Consensus 142 ~v~l~ 146 (147)
T PTZ00160 142 ACVLT 146 (147)
T ss_pred EEEEc
Confidence 99875
>PRK04005 50S ribosomal protein L18e; Provisional
Back Show alignment and domain information
Probab=99.45 E-value=1.5e-13 Score=91.97 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=36.5
Q ss_pred ceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEE
Q 047908 40 GVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRR 79 (94)
Q Consensus 40 ~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~ 79 (94)
++||||+| +++++++|++++||++|+++||++||++++
T Consensus 56 ~~KVLg~G--~l~k~l~V~a~~~Sk~A~ekIe~aGG~v~~ 93 (111)
T PRK04005 56 PGKVLGSG--KLDHKVTVAALSFSETAKEKIEEAGGKALT 93 (111)
T ss_pred eeEEEcCc--eEcCCEEEEEeecCHHHHHHHHHcCCEEEE
Confidence 68999999 999999999999999999999999999865
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=98.98 E-value=9.1e-10 Score=74.53 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=47.3
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRRV 80 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~~ 80 (94)
+||+++|+....+|. ++ +++ =||||.| .+.++++|-+-+||++|+++|+.|||++..+
T Consensus 48 ~VnlsKI~r~ak~~d-----~v---------vVp------GkVLg~g--~l~~kVtVaAl~FS~~A~~KI~~aGGe~~tl 105 (122)
T COG1727 48 EVNVSKINRYAKEGD-----TV---------VVP------GKVLGDG--KLDKKVTVAALRFSKTAREKIEEAGGECLTL 105 (122)
T ss_pred ceeHHHHHhhcCCCC-----EE---------EEe------eeEecCc--ccccceEEEEEecCHHHHHHHHHcCCeEeeH
Confidence 478888887765443 33 332 3899999 9999999999999999999999999998654
>PTZ00469 60S ribosomal subunit protein L18; Provisional
Back Show alignment and domain information
Probab=98.62 E-value=8.1e-08 Score=69.33 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=36.5
Q ss_pred EEEcCCccccc--ccEEEEEEecCHHHHHHHHHcCCEEEEEEecHhhh
Q 047908 42 RLMGRGAEKIK--WPIHLEVSRVTVRAKAAVEAAGGSVRRVHYNKLGL 87 (94)
Q Consensus 42 KlLg~G~~~l~--~~i~I~~~~~S~~A~~~Ie~aGG~v~~~~~~~~~l 87 (94)
|||++| .+. .+++|-|-.||++|+++|++|||+|. -|+.+.+
T Consensus 84 kVl~dg--rl~~vpkvtVaAL~fS~~Ar~kI~~AGGe~l--T~dqLa~ 127 (187)
T PTZ00469 84 SITDDK--RLYDCKKLKVCALRFTETARKRILDAGGECL--TFDQLAL 127 (187)
T ss_pred eEccCc--cccccCceEEEEEecCHHHHHHHHHhCCEEE--eHHHHHH
Confidence 799999 998 99999999999999999999999764 4555544
>PTZ00195 60S ribosomal protein L18; Provisional
Back Show alignment and domain information
Probab=98.49 E-value=4.3e-07 Score=66.02 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=37.1
Q ss_pred EEEcCCcccccc--cEEEEEEecCHHHHHHHHHcCCEEEEEEecHhhhh
Q 047908 42 RLMGRGAEKIKW--PIHLEVSRVTVRAKAAVEAAGGSVRRVHYNKLGLR 88 (94)
Q Consensus 42 KlLg~G~~~l~~--~i~I~~~~~S~~A~~~Ie~aGG~v~~~~~~~~~l~ 88 (94)
+|+++| .+.. +++|-|-+||++|+++|++|||+|. -|+.+.++
T Consensus 92 kVtdd~--rl~~vPkvtVaALrfS~tAr~rI~kAGGe~l--T~dQLa~~ 136 (198)
T PTZ00195 92 DVLDDV--RMARIPAMRVCALRFSKSARQSIVAAGGECL--TFDQLAMI 136 (198)
T ss_pred eEcCCc--cccccCceEEEEEecCHHHHHHHHHhCCEEE--eHHHHHHH
Confidence 799999 9987 9999999999999999999999754 45666554
>KOG1742 consensus 60s ribosomal protein L15/L27 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=98.43 E-value=6.3e-08 Score=67.16 Aligned_cols=70 Identities=21% Similarity=0.345 Sum_probs=50.0
Q ss_pred CcchhhHHhHHHcCCCCC-----CCccCHHHHHHcCCccCCCCCceEEEcCCccccc--ccEEEEEEecCHHHHHHHHHc
Q 047908 1 PVGLGKIAYLINAGKIDS-----HELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIK--WPIHLEVSRVTVRAKAAVEAA 73 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~-----~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~--~~i~I~~~~~S~~A~~~Ie~a 73 (94)
+|||++||.++.+..-+. .....+-++.+.| +.|+||.| .|+ +|+.+++..||+.|.++|.++
T Consensus 70 ~vnldkLWtlv~~~~~~~~~~~k~g~aPvidv~~~G--------y~kvlGkg--klp~~~PvIVKak~~s~~AeekIk~~ 139 (147)
T KOG1742|consen 70 TVNLDKLWTLVREQTRVKAAKNKTGAAPVIDVVQSG--------YYKVLGKG--KLPEETPVIVKAKYFSRRAEEKIKKA 139 (147)
T ss_pred cccHHHHHHhhhHHHHHHHhccCCCCCceeeeeecc--------eeEeeccc--cCCCCCcEEEeccccCccchHHHHhc
Confidence 489999999985321110 1112222222333 56999999 875 999999999999999999999
Q ss_pred CCEEEEE
Q 047908 74 GGSVRRV 80 (94)
Q Consensus 74 GG~v~~~ 80 (94)
||.+...
T Consensus 140 gg~~~~~ 146 (147)
T KOG1742|consen 140 GGAVVLT 146 (147)
T ss_pred Cceeeec
Confidence 9998764
>KOG1714 consensus 60s ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=92.17 E-value=0.13 Score=37.28 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=28.7
Q ss_pred ccEEEEEEecCHHHHHHHHHcCCEEEEEEecHhhhh
Q 047908 53 WPIHLEVSRVTVRAKAAVEAAGGSVRRVHYNKLGLR 88 (94)
Q Consensus 53 ~~i~I~~~~~S~~A~~~Ie~aGG~v~~~~~~~~~l~ 88 (94)
.++.|.+.+||++|++.|+++||+|-+ ++.++|+
T Consensus 96 Pkl~v~al~~t~~ar~rI~kagg~i~T--lDQLal~ 129 (188)
T KOG1714|consen 96 PKLKVAALRFTKGARARILKAGGEILT--LDQLALD 129 (188)
T ss_pred ccceeeeeecccchhhhhhccCceEEe--eHHhccc
Confidence 689999999999999999999999754 5666554
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length
Back Show alignment and domain information
Probab=88.72 E-value=0.63 Score=29.62 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.2
Q ss_pred CHHHHHHHHHcCCEEEEEEecH
Q 047908 63 TVRAKAAVEAAGGSVRRVHYNK 84 (94)
Q Consensus 63 S~~A~~~Ie~aGG~v~~~~~~~ 84 (94)
-+.+++.+|++||+++-.||+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~ 43 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL 43 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec
Confidence 3568899999999999999984
They may belong to the dimeric alpha/beta barrel superfamily.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 94
d2gycj1 140
c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {E
4e-07 d1vqol1 150
c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {A
6e-07 d2zjri1 141
c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {D
2e-05 d2j01p1 146
c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {T
0.002
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Length = 140
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]
Score = 43.1 bits (101), Expect = 4e-07
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 20 ELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSV 77
++ + TLK A IG QIE + A ++ P+ + RVT A+AA+EAAGG +
Sbjct: 85 GVVDLNTLKAANIIGIQIEFAKVI---LAGEVTTPVTVRGLRVTKGARAAIEAAGGKI 139
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 42.3 bits (99), Expect = 6e-07
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 7 IAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRA 66
+ L + + ++D D V+++G G +++ + L + A
Sbjct: 73 VTLLAADDVAEVEDGGFRVDVRDVVEEADDA-DYVKVLGAG--QVRHELTLIADDFSEGA 129
Query: 67 KAAVEAAGGSV 77
+ VE AGGSV
Sbjct: 130 REKVEGAGGSV 140
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Length = 141
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]
Score = 38.4 bits (89), Expect = 2e-05
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 6 KIAYLINAGKIDS--HELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVT 63
++ ++ TL+ + ++ V+L+ G +I + + V +
Sbjct: 67 TTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKN-RPVKLLASG--EISRAVTVHVDAAS 123
Query: 64 VRAKAAVEAAGGSV 77
A AVEAAGG V
Sbjct: 124 AAAIKAVEAAGGRV 137
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]
Score = 32.7 bits (74), Expect = 0.002
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 22 ITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSV 77
+T + L AG + K ++++G G K P+ + + A ++AAGG
Sbjct: 91 VTPELLVRAGLLKK--GYRLKILGEGEAK---PLKVVAHAFSKSALEKLKAAGGEP 141
