Citrus Sinensis ID: 047929

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790
Protein Sequence
MGCLESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLALCLSAGDGGTSTVISWMALGRG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccccEEEEEcccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccEEcccccccccccccEEEcccccccccccHHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEccccccEEEcccccccccccccEEEcccccccEEccHHHHHHcccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccEEEEcccHHHHccccccEEEcccccccccccHHHHHHcccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHHHHcccccccccEEEEEEcccccccEEEEEEEEEccccHHHHHHccccEEEEcccccccccccHHHcccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccHHHHccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEccccccccccccHHHHcccccccEEEcccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEEccccccccccHHHcccccccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHHccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccHHHHHHHHcccccccccccccccccHHHHHccccccccccccccccccEEEEccEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHccHHHccHHHcccccccccccccHccccccccHcccccccccccHHHHHHHcc
Coil and Loop (DISEMBL)
MGCLESERVALIKLKqdfkdpsnhlaswigdvdccewggvvcnNITGHVLELNLerselggkinpalvdlkhlnlldlsgndfqgiqipeyigsmdNLRYLNlsgagfagwiphqlgnlsnlmhldlsgsyyelrvediswlagpsllehldtsdvdlikASDWllvinslpslkvlklfscklhhfaplasanfsslnaldlsgnlfgktsipswvfgLSDLVFldlssnifrgpipdgfknltslrYLDLsynqfnstisdcfsnfddleylslgynrlqgtissiglenltfikTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQlglfknlhtlalsdnsvsgplppasgelssltYLDLsnnnlngmiseihfgnLTELAFFYAngnsvnfkinskwvppfQLLALRLRschlgphfpswlhsqkhlskldisntrisdiiprwfwnsiyqdtipdcwmnwpdlrvlnlgnnkftgsipismgtltSLRSLNLrsnrlsgiipvpfencsQLVAldmgenefvgniptwmgERFSRLRILNlrsnklhgifpiqichlsslQILDVAYNrlsgsvpkcINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDismnnfsgeipmevtnlkglqslnlshnsfigkipetignmrsiesldlsgnqisgkipqsmsslsflnhlnlsdnklvgkipsstqlqsfgassitgndlcgaplsncteKNVLALCLsagdggtsTVISWMALGRG
Flexible Loop (DISEMBL)
MGCLESERVALIKLKqdfkdpsnhLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLALCLSagdggtstVISWMALGRG
Low Complexity Region (SEG)
MGCLESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPAlvdlkhlnlldlSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGtltslrslnlrsnrlsGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQsmsslsflnhlnlsdnKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLALCLSAGDGGTSTVISWMALGRG
Disordered region (IsUnstruct)
********VALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS****************SLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI***************KAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGN**************************FLNHLNL****LV***********FGASSITGNDLCGAPLSNCTEKNVLALCLSAGDGGTSTVISWMAL***
Disordered Region (DISOPRED)
MGCLESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGS**QVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGA**************************SWMALGRG
Disordered Region (DISEMBL)
MGCLESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLALCLSAGDGGTSTVISWMALGRG
Disordered Region (DISPRO)
MGCLESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLALCLSAGDGGTSTVISWMA**RG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGCLESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLALCLSAGDGGTSTVISWMALGRG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	790	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.902	0.841	0.318	7e-76
Q9FL28	1173	LRR receptor-like serine/	no	no	0.921	0.620	0.324	5e-74
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.918	0.581	0.294	5e-66
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.797	0.503	0.306	8e-65
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.889	0.589	0.295	5e-59
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.886	0.635	0.305	1e-58
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.860	0.617	0.293	1e-55
Q9LP24	1120	Probable leucine-rich rep	no	no	0.868	0.612	0.282	8e-55
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.897	0.624	0.299	2e-54
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.810	0.569	0.279	4e-54

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  285 bits (730), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 244/766 (31%), Positives = 379/766 (49%), Gaps = 53/766 (6%)

Query: 3   CLESERVALIKLKQDFK-DPSNHL-----ASWIGDVDCCEWGGVVCNNITGHVLELNLER 56
           C + +R AL++ + +F  + S H+       W    DCC W GV CN+ +G V+ L++  
Sbjct: 34  CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPN 93

Query: 57  SELGG--KINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPH 114
           + L    K N +L  L++L  LDL+  +  G +IP  +G++ +L  +NL    F G IP 
Sbjct: 94  TFLNNYLKTNSSLFKLQYLRHLDLTNCNLYG-EIPSSLGNLSHLTLVNLYFNKFVGEIPA 152

Query: 115 QLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLI-KASDWLLVINSLPS 173
            +GNL+ L HL L+ +   L  E  S L   S L +L+     L+ K  D    I  L  
Sbjct: 153 SIGNLNQLRHLILANNV--LTGEIPSSLGNLSRLVNLELFSNRLVGKIPD---SIGDLKQ 207

Query: 174 LKVLKLFSCKLHHFAPLASANFSSLNALDLSGN-LFGKTSIPSWVFGLSDLVFLDLSSNI 232
           L+ L L S  L    P +  N S+L  L L+ N L G+  +P+ +  L +L  +   +N 
Sbjct: 208 LRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGE--VPASIGNLIELRVMSFENNS 265

Query: 233 FRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLEN 292
             G IP  F NLT L    LS N F ST     S F +LEY  + YN   G       ++
Sbjct: 266 LSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFP----KS 321

Query: 293 LTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTL 352
           L  I +L+  + +  Q    I +  +  ++ +L+ L L   ++ G +   +    NL  L
Sbjct: 322 LLLIPSLESIYLQENQFTGPI-EFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEEL 380

Query: 353 ALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVN-FK 411
            +S N+ +G +PP   +L +L +LDLS NNL G +       L  L     + NS + F+
Sbjct: 381 DISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPAC----LWRLNTMVLSHNSFSSFE 436

Query: 412 INSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQD 471
             S+     + L L   S   GP  P  +     L  LD+SN             +++  
Sbjct: 437 NTSQEEALIEELDLNSNSFQ-GP-IPYMICKLSSLGFLDLSN-------------NLFSG 481

Query: 472 TIPDCWMNWP-DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQ 530
           +IP C  N+   ++ LNLG+N F+G++P      T L SL++  N+L G  P    NC  
Sbjct: 482 SIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKA 541

Query: 531 LVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLS----SLQILDVA 586
           L  +++  N+     P+W+ E    L +LNLRSNK +G  P+   H S    SL+I+D++
Sbjct: 542 LELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFYG--PLYHRHASIGFQSLRIIDIS 598

Query: 587 YNRLSGSVPKC-INNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSIL 645
           +N  SG++P    +N+  M T+             + + Y   E+ +V KG  + +  I 
Sbjct: 599 HNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSY-YHEMEMVNKGVDMSFERIR 657

Query: 646 NLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQ 705
              R+ID S N  +G IP  +  LK L+ LNLS N+F   IP  + N+  +E+LD+S N+
Sbjct: 658 RDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNK 717

Query: 706 ISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN 751
           +SG+IPQ +++LSFL+++N S N L G +P  TQ Q    SS   N
Sbjct: 718 LSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDN 763

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  279 bits (714), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 260/802 (32%), Positives = 372/802 (46%), Gaps = 74/802 (9%)

Query: 4   LESERVALIKLKQDFK-DPSNHLASW--IGDVDCCEWGGVVCNNITGHVLELNLERSELG 60
            E E  AL   K     DP   L+ W  IG +  C W G+ C++ TGHV+ ++L   +L 
Sbjct: 27  FEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDS-TGHVVSVSLLEKQLE 85

Query: 61  GKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLS 120
           G ++PA+ +L +L +LDL+ N F G +IP  IG +  L  L L    F+G IP  +  L 
Sbjct: 86  GVLSPAIANLTYLQVLDLTSNSFTG-KIPAEIGKLTELNQLILYLNYFSGSIPSGIWELK 144

Query: 121 NLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPS----LKV 176
           N+ +LDL  +           L+G    E   TS + LI   D+  +   +P     L  
Sbjct: 145 NIFYLDLRNN----------LLSGDVPEEICKTSSLVLI-GFDYNNLTGKIPECLGDLVH 193

Query: 177 LKLFSCKLHHFA---PLASANFSSLNALDLSGN-LFGKTSIPSWVFGLSDLVFLDLSSNI 232
           L++F    +H     P++    ++L  LDLSGN L GK  IP     L +L  L L+ N+
Sbjct: 194 LQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGK--IPRDFGNLLNLQSLVLTENL 251

Query: 233 FRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLEN 292
             G IP    N +SL  L+L  NQ    I     N   L+ L +  N+L  +I S  L  
Sbjct: 252 LEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPS-SLFR 310

Query: 293 LTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRG-------------------C 333
           LT +  L LS N L   ISE +  + +     L S    G                    
Sbjct: 311 LTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFN 370

Query: 334 KISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFG 393
            ISG+L   LGL  NL  L+  DN ++GP+P +    + L  LDLS+N + G I    FG
Sbjct: 371 NISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPR-GFG 429

Query: 394 NLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISN 453
            +  L F     N    +I         L  L +   +L       +   + L  L +S 
Sbjct: 430 RMN-LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSY 488

Query: 454 TRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLR 513
             ++  IPR   N               DL +L L +N FTG IP  M  LT L+ L + 
Sbjct: 489 NSLTGPIPREIGN-------------LKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMY 535

Query: 514 SNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQ 573
           SN L G IP    +   L  LD+  N+F G IP     +   L  L+L+ NK +G  P  
Sbjct: 536 SNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFS-KLESLTYLSLQGNKFNGSIPAS 594

Query: 574 ICHLSSLQILDVAYNRLSGSVP----KCINNFTAMATIGSHHQVKAIYHASFENDYIVEE 629
           +  LS L   D++ N L+G++P      + N        S++ +            +V+E
Sbjct: 595 LKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNF-SNNLLTGTIPKELGKLEMVQE 653

Query: 630 ISL---VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGK 685
           I L   +  G +         V ++D S NN SG IP EV   +  + SLNLS NSF G+
Sbjct: 654 IDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGE 713

Query: 686 IPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGA 745
           IP++ GNM  + SLDLS N ++G+IP+S+++LS L HL L+ N L G +P S   ++  A
Sbjct: 714 IPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINA 773

Query: 746 SSITGN-DLCGA--PLSNCTEK 764
           S + GN DLCG+  PL  CT K
Sbjct: 774 SDLMGNTDLCGSKKPLKPCTIK 795

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  253 bits (646), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 253/860 (29%), Positives = 390/860 (45%), Gaps = 134/860 (15%)

Query: 4   LESERVALIKLKQDFKDPSNHLASWIGD-VDCCEWGGVVCNNITG--HVLELNLERSELG 60
           LE ++  +   ++D  DP   L  W  D ++ C W GV C+N TG   V+ LNL    L 
Sbjct: 31  LEVKKSLVTNPQED--DP---LRQWNSDNINYCSWTGVTCDN-TGLFRVIALNLTGLGLT 84

Query: 61  GKINPALVDLKHLNLLDLSGNDFQGI-----------------------QIPEYIGSMDN 97
           G I+P      +L  LDLS N+  G                        +IP  +GS+ N
Sbjct: 85  GSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVN 144

Query: 98  LRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYE----------LRVEDI----SWLA 143
           +R L +      G IP  LGNL NL  L L+               +RV+ +    ++L 
Sbjct: 145 IRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLE 204

Query: 144 GPSLLEHLDTSDVDLIKASDWLL------VINSLPSLKVLKLFSCKLHHFAPLASANFSS 197
           GP   E  + SD+ +  A++ +L       +  L +L++L L +  L    P      S 
Sbjct: 205 GPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQ 264

Query: 198 LNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQF 257
           L  L L  N   +  IP  +  L +L  LDLS+N   G IP+ F N++ L  L L+ N  
Sbjct: 265 LQYLSLMANQL-QGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHL 323

Query: 258 NSTISDCF-SNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEIL-- 314
           + ++     SN  +LE L L   +L G I  + L     +K LDLS N L   I E L  
Sbjct: 324 SGSLPKSICSNNTNLEQLVLSGTQLSGEIP-VELSKCQSLKQLDLSNNSLAGSIPEALFE 382

Query: 315 -----DII------------------------------------SACAAFELESLFLRGC 333
                D+                                        A  +LE LFL   
Sbjct: 383 LVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYEN 442

Query: 334 KISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFG 393
           + SG++  ++G   +L  + +  N   G +PP+ G L  L  L L  N L G +     G
Sbjct: 443 RFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPA-SLG 501

Query: 394 NLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISN 453
           N  +L       N ++  I S +     L  L L +  L  + P  L S ++L+++++S+
Sbjct: 502 NCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSH 561

Query: 454 TRISDIIPRWFWNSIY----------QDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT 503
            R++  I     +S Y          +D IP    N  +L  L LG N+ TG IP ++G 
Sbjct: 562 NRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGK 621

Query: 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563
           +  L  L++ SN L+G IP+    C +L  +D+  N   G IP W+G + S+L  L L S
Sbjct: 622 IRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLG-KLSQLGELKLSS 680

Query: 564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFEN 623
           N+     P ++ + + L +L +  N L+GS+P+ I N  A+  +              +N
Sbjct: 681 NQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLD-----------KN 729

Query: 624 DYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQS-LNLSHNSF 682
            +          G + +    L+ +  + +S N+ +GEIP+E+  L+ LQS L+LS+N+F
Sbjct: 730 QF---------SGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNF 780

Query: 683 IGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQS 742
            G IP TIG +  +E+LDLS NQ++G++P S+  +  L +LN+S N L GK+    Q   
Sbjct: 781 TGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSR 838

Query: 743 FGASSITGND-LCGAPLSNC 761
           + A S  GN  LCG+PLS C
Sbjct: 839 WPADSFLGNTGLCGSPLSRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  249 bits (635), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 217/707 (30%), Positives = 328/707 (46%), Gaps = 77/707 (10%)

Query: 58  ELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLG 117
            L G +   L  LK+L  L+L  N F G +IP  +G + +++YLNL G    G IP +L 
Sbjct: 227 RLNGSLPAELNRLKNLQTLNLGDNSFSG-EIPSQLGDLVSIQYLNLIGNQLQGLIPKRLT 285

Query: 118 NLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVL 177
            L+NL  LDLS +     + +  W                             +  L+ L
Sbjct: 286 ELANLQTLDLSSNNLTGVIHEEFW----------------------------RMNQLEFL 317

Query: 178 KLFSCKLHHFAPLA-SANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGP 236
            L   +L    P    +N +SL  L LS        IP+ +     L  LDLS+N   G 
Sbjct: 318 VLAKNRLSGSLPKTICSNNTSLKQLFLSETQL-SGEIPAEISNCQSLKLLDLSNNTLTGQ 376

Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
           IPD    L  L  L L+ N    T+S   SN  +L+  +L +N L+G +     + + F+
Sbjct: 377 IPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVP----KEIGFL 432

Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
             L++ +    +   E+   I  C    L+ +   G ++SG++ + +G  K+L  L L +
Sbjct: 433 GKLEIMYLYENRFSGEMPVEIGNCT--RLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRE 490

Query: 357 NSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKW 416
           N + G +P + G    +T +DL++N L+G I    FG LT L  F    NS+   +    
Sbjct: 491 NELVGNIPASLGNCHQMTVIDLADNQLSGSIPS-SFGFLTALELFMIYNNSLQGNLPDSL 549

Query: 417 VPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDC 476
           +    L  +   S            S  +LS  D++       IP     S         
Sbjct: 550 INLKNLTRINFSSNKFNGSISPLCGSSSYLS-FDVTENGFEGDIPLELGKST-------- 600

Query: 477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDM 536
                +L  L LG N+FTG IP + G ++ L  L++  N LSGIIPV    C +L  +D+
Sbjct: 601 -----NLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDL 655

Query: 537 GENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK 596
             N   G IPTW+G +   L  L L SNK  G  P +I  L+++  L +  N L+GS+P+
Sbjct: 656 NNNYLSGVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQ 714

Query: 597 CINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMN 656
            I N  A+                  N   +EE  L   G +      L+ +  + +S N
Sbjct: 715 EIGNLQAL------------------NALNLEENQL--SGPLPSTIGKLSKLFELRLSRN 754

Query: 657 NFSGEIPMEVTNLKGLQS-LNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS 715
             +GEIP+E+  L+ LQS L+LS+N+F G+IP TI  +  +ESLDLS NQ+ G++P  + 
Sbjct: 755 ALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIG 814

Query: 716 SLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAPLSNC 761
            +  L +LNLS N L GK+    Q   + A +  GN  LCG+PLS+C
Sbjct: 815 DMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCGSPLSHC 859

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  229 bits (585), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 247/837 (29%), Positives = 367/837 (43%), Gaps = 134/837 (16%)

Query: 4   LESERVALIKLKQDFKDPSN-HLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGK 62
           L SE  +LI  K+  ++PS     +       C+W GV C  + G V  L+L    L G+
Sbjct: 23  LSSETTSLISFKRSLENPSLLSSWNVSSSASHCDWVGVTC--LLGRVNSLSLPSLSLRGQ 80

Query: 63  INPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNL 122
           I   +  LK+L  L L+GN F G +IP  I ++ +L+ L+LSG    G +P  L  L  L
Sbjct: 81  IPKEISSLKNLRELCLAGNQFSG-KIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQL 139

Query: 123 MHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC 182
           ++LDLS +++       S    PS                       SLP+L  L + + 
Sbjct: 140 LYLDLSDNHF-------SGSLPPSFF--------------------ISLPALSSLDVSNN 172

Query: 183 KLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFK 242
            L    P      S+L+ L +  N F    IPS +  +S L      S  F GP+P    
Sbjct: 173 SLSGEIPPEIGKLSNLSNLYMGLNSF-SGQIPSEIGNISLLKNFAAPSCFFNGPLPKEIS 231

Query: 243 NLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLS 302
            L  L  LDLSYN    +I   F    +L  L+L    L G I    L N   +K+L LS
Sbjct: 232 KLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPP-ELGNCKSLKSLMLS 290

Query: 303 FNELGQ----DISEILDIISACAAFEL--------------ESLFLRGCKISGQLTNQLG 344
           FN L      ++SEI  +  +    +L              +SL L   + SG++ +++ 
Sbjct: 291 FNSLSGPLPLELSEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIE 350

Query: 345 LFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYAN 404
               L  L+L+ N +SG +P       SL  +DLS N L+G I E+ F   + L      
Sbjct: 351 DCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEV-FDGCSSLGELLLT 409

Query: 405 GNSVNFKINSK-WVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRW 463
            N +N  I    W  P  L+AL L S +     P  L    +L +   S  R+   +P  
Sbjct: 410 NNQINGSIPEDLWKLP--LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAE 467

Query: 464 FWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPV 523
             N+               L+ L L +N+ TG IP  +G LTSL  LNL +N   G IPV
Sbjct: 468 IGNAA-------------SLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPV 514

Query: 524 PFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFP---------IQI 574
              +C+ L  LD+G N   G IP  +    ++L+ L L  N L G  P         I++
Sbjct: 515 ELGDCTSLTTLDLGSNNLQGQIPDKI-TALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEM 573

Query: 575 CHLSSLQ---ILDVAYNRLSGSVPKCINNFTAMATIG-SHHQVKAIYHASFE-------- 622
             LS LQ   I D++YNRLSG +P+ +     +  I  S++ +     AS          
Sbjct: 574 PDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTIL 633

Query: 623 -------NDYIVEEI--SLVMKGFMVEYNSI----------------LNLVRS------- 650
                     I +E+  SL ++G  +  N +                LNL ++       
Sbjct: 634 DLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVP 693

Query: 651 -----------IDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESL 699
                      +D+S NN SGE+  E++ ++ L  L +  N F G+IP  +GN+  +E L
Sbjct: 694 ASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYL 753

Query: 700 DLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCG 755
           D+S N +SG+IP  +  L  L  LNL+ N L G++PS    Q    + ++GN +LCG
Sbjct: 754 DVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCG 810

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  228 bits (581), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 240/786 (30%), Positives = 360/786 (45%), Gaps = 86/786 (10%)

Query: 11  LIKLKQDFKDPSNHLASW-IGDVDCCEWGGVVCNNITG--HVLELNLERSELGGKINPAL 67
           L+++K  F D   +L +W   D   C W GV+C+N +    VL LNL    L GK++P++
Sbjct: 34  LLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSI 93

Query: 68  VDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDL 127
             L HL  LDLS N   G +IP+ IG+  +L  L L+   F G IP ++G L +L +L +
Sbjct: 94  GGLVHLKQLDLSYNGLSG-KIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLII 152

Query: 128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHF 187
               Y  R+                        +    + I +L SL  L  +S  +   
Sbjct: 153 ----YNNRI------------------------SGSLPVEIGNLLSLSQLVTYSNNISGQ 184

Query: 188 APLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSL 247
            P +  N   L +     N+    S+PS + G   LV L L+ N   G +P     L  L
Sbjct: 185 LPRSIGNLKRLTSFRAGQNMI-SGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKL 243

Query: 248 RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELG 307
             + L  N+F+  I    SN   LE L+L  N+L G I    L +L  ++ L L  N L 
Sbjct: 244 SQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPK-ELGDLQSLEFLYLYRNGLN 302

Query: 308 QDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS 367
             I    +I +   A E++        ++G++  +LG  + L  L L +N ++G +P   
Sbjct: 303 GTIPR--EIGNLSYAIEID---FSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVEL 357

Query: 368 GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRL 427
             L +L+ LDLS N L G I  + F  L  L       NS++  I  K      L  L +
Sbjct: 358 STLKNLSKLDLSINALTGPIP-LGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDM 416

Query: 428 RSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLN 487
              HL    PS+L    ++  L++    +S  IP           I  C      L  L 
Sbjct: 417 SDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTG---------ITTC----KTLVQLR 463

Query: 488 LGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPT 547
           L  N   G  P ++    ++ ++ L  NR  G IP    NCS L  L + +N F G +P 
Sbjct: 464 LARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPR 523

Query: 548 WMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATI 607
            +G   S+L  LN+ SNKL G  P +I +   LQ LD+  N  SG++P         + +
Sbjct: 524 EIG-MLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLP---------SEV 573

Query: 608 GSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISM--NNFSGEIPME 665
           GS +Q++ +      N+ +   I + +           NL R  ++ M  N F+G IP E
Sbjct: 574 GSLYQLELL---KLSNNNLSGTIPVALG----------NLSRLTELQMGGNLFNGSIPRE 620

Query: 666 VTNLKGLQ-SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLN 724
           + +L GLQ +LNLS+N   G+IP  + N+  +E L L+ N +SG+IP S ++LS L   N
Sbjct: 621 LGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYN 680

Query: 725 LSDNKLVGKIPSSTQLQSFGASSITGND-LCGAPLSNCTEKNVLALCLSAGDGG---TST 780
            S N L G IP    L++   SS  GN+ LCG PL+ C +    A   S G  G   +S 
Sbjct: 681 FSYNSLTGPIP---LLRNISMSSFIGNEGLCGPPLNQCIQTQPFAPSQSTGKPGGMRSSK 737

Query: 781 VISWMA 786
           +I+  A
Sbjct: 738 IIAITA 743

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  218 bits (556), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 225/767 (29%), Positives = 351/767 (45%), Gaps = 87/767 (11%)

Query: 4   LESERVALIKLKQDFKDPSNHLASWIG-DVDCCEWGGVVCNNITGHVLELNLERSELGGK 62
           L  E   L++ K    D + +LASW   D + C W G+ C ++   V  ++L    L G 
Sbjct: 24  LNEEGRVLLEFKAFLNDSNGYLASWNQLDSNPCNWTGIACTHLR-TVTSVDLNGMNLSGT 82

Query: 63  INPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNL 122
           ++P +  L  L  L++S N   G  IP+ +    +L  L+L    F G IP QL  +  L
Sbjct: 83  LSPLICKLHGLRKLNVSTNFISG-PIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITL 141

Query: 123 MHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC 182
             L L  +Y          L G    +                  I +L SL+ L ++S 
Sbjct: 142 KKLYLCENY----------LFGSIPRQ------------------IGNLSSLQELVIYSN 173

Query: 183 KLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFK 242
            L    P + A    L  +    N F    IPS + G   L  L L+ N+  G +P   +
Sbjct: 174 NLTGVIPPSMAKLRQLRIIRAGRNGFSGV-IPSEISGCESLKVLGLAENLLEGSLPKQLE 232

Query: 243 NLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI-SSIGLENLTFIKTLDL 301
            L +L  L L  N+ +  I     N   LE L+L  N   G+I   IG   LT +K L L
Sbjct: 233 KLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIG--KLTKMKRLYL 290

Query: 302 SFNELGQDI-SEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS 360
             N+L  +I  EI ++I A      E+      +++G +  + G   NL  L L +N + 
Sbjct: 291 YTNQLTGEIPREIGNLIDAAEIDFSEN------QLTGFIPKEFGHILNLKLLHLFENILL 344

Query: 361 GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPF 420
           GP+P   GEL+ L  LDLS N LNG I +       EL F                  P+
Sbjct: 345 GPIPRELGELTLLEKLDLSINRLNGTIPQ-------ELQFL-----------------PY 380

Query: 421 QLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNW 480
            L+ L+L    L    P  +    + S LD+S   +S  IP  F               +
Sbjct: 381 -LVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCR-------------F 426

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
             L +L+LG+NK +G+IP  + T  SL  L L  N+L+G +P+   N   L AL++ +N 
Sbjct: 427 QTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNW 486

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
             GNI   +G +   L  L L +N   G  P +I +L+ +   +++ N+L+G +PK + +
Sbjct: 487 LSGNISADLG-KLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGS 545

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEY--NSILNLVRSIDISM--N 656
              +  +       + Y A      +  EI  +    +     +S  +L R +++ +  N
Sbjct: 546 CVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGN 605

Query: 657 NFSGEIPMEVTNLKGLQ-SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS 715
             S  IP+E+  L  LQ SLN+SHN+  G IP+++GN++ +E L L+ N++SG+IP S+ 
Sbjct: 606 LLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIG 665

Query: 716 SLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGND-LCGAPLSNC 761
           +L  L   N+S+N LVG +P +   Q   +S+  GN  LC +  S+C
Sbjct: 666 NLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCNSQRSHC 712

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  216 bits (549), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 224/794 (28%), Positives = 345/794 (43%), Gaps = 108/794 (13%)

Query: 6   SERVALIKLKQDFKDPSNHLASWIGDVD------CCEWGGVVCNNITGHVLELNLERSEL 59
           +E  AL+K K  F + S+ L+SW+ D +      C  W GV CN+  G + ELNL  + +
Sbjct: 32  AEANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSCNS-RGSIEELNLTNTGI 89

Query: 60  GGKINP-ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGN 118
            G       + L +L  +DLS N   G  IP   G++  L Y +LS     G I   LGN
Sbjct: 90  EGTFQDFPFISLSNLAYVDLSMNLLSGT-IPPQFGNLSKLIYFDLSTNHLTGEISPSLGN 148

Query: 119 LSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLL-----VINSLPS 173
           L NL  L L  +Y    +        PS L +++ S  DL  + + L       + +L +
Sbjct: 149 LKNLTVLYLHQNYLTSVI--------PSELGNME-SMTDLALSQNKLTGSIPSSLGNLKN 199

Query: 174 LKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIF 233
           L VL L+   L    P    N  S+  L LS N     SIPS +  L +L+ L L  N  
Sbjct: 200 LMVLYLYENYLTGVIPPELGNMESMTDLALSQNKL-TGSIPSTLGNLKNLMVLYLYENYL 258

Query: 234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL 293
            G IP    N+ S+  L LS N+   +I     N  +L  LSL  N L G I    L N+
Sbjct: 259 TGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPP-KLGNI 317

Query: 294 TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGC-------------------K 334
             +  L+LS N+L   I   L  +       L   +L G                    K
Sbjct: 318 ESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNK 377

Query: 335 ISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGN 394
           ++G + +  G  KNL  L L  N ++G +P   G + S+  LDLS N L G + +  FGN
Sbjct: 378 LTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPD-SFGN 436

Query: 395 LTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNT 454
            T+L   Y   N ++  I         L  L L + +    FP  +   + L  + +   
Sbjct: 437 FTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYN 496

Query: 455 RISDIIPR-----------WFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT 503
            +   IP+            F  + +   I + +  +PDL  ++  +NKF G I  +   
Sbjct: 497 HLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEK 556

Query: 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGE--RFSRLRILNL 561
              L +L + +N ++G IP    N +QLV LD+  N   G +P  +G     SRLR   L
Sbjct: 557 SPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLR---L 613

Query: 562 RSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASF 621
             N+L G  P  +  L++L+ LD++ N  S  +P+  ++F  +                 
Sbjct: 614 NGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKL----------------- 656

Query: 622 ENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNS 681
                                        +++S N F G IP  ++ L  L  L+LSHN 
Sbjct: 657 ---------------------------HDMNLSRNKFDGSIP-RLSKLTQLTQLDLSHNQ 688

Query: 682 FIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQ 741
             G+IP  + +++S++ LDLS N +SG IP +   +  L ++++S+NKL G +P +   +
Sbjct: 689 LDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFR 748

Query: 742 SFGASSITGN-DLC 754
              A ++  N  LC
Sbjct: 749 KATADALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  214 bits (546), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 229/764 (29%), Positives = 336/764 (43%), Gaps = 55/764 (7%)

Query: 5   ESERVALIKLKQDFKDPSNHLASWIGDVDC--CEWGGVVCNNITGHVLELNLERSELGGK 62
           ++E  AL   K +  DP   L SW        C+W GV C N    V E+ L R +L G+
Sbjct: 26  QAEIDALTAFKLNLHDPLGALTSWDPSTPAAPCDWRGVGCTN--HRVTEIRLPRLQLSGR 83

Query: 63  INPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNL 122
           I+  +  L+ L  L L  N F G  IP  +     L  + L     +G +P  + NL++L
Sbjct: 84  ISDRISGLRMLRKLSLRSNSFNGT-IPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSL 142

Query: 123 MHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC 182
              +++G+    R+     +  PS L+ LD S           L   +   L  L     
Sbjct: 143 EVFNVAGN----RLSGEIPVGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSY--N 196

Query: 183 KLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFK 242
           +L    P +  N  SL  L L  NL   T +PS +   S LV L  S N   G IP  + 
Sbjct: 197 QLTGEIPASLGNLQSLQYLWLDFNLLQGT-LPSAISNCSSLVHLSASENEIGGVIPAAYG 255

Query: 243 NLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL-TFIKTLDL 301
            L  L  L LS N F+ T+         L  + LG+N     +      N  T ++ LDL
Sbjct: 256 ALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDL 315

Query: 302 SFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSG 361
             N +       L  I       L++L + G   SG++   +G  K L  L L++NS++G
Sbjct: 316 QENRISGRFPLWLTNI-----LSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTG 370

Query: 362 PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQ 421
            +P    +  SL  LD   N+L G I E   G +  L       NS +  + S  V   Q
Sbjct: 371 EIPVEIKQCGSLDVLDFEGNSLKGQIPEF-LGYMKALKVLSLGRNSFSGYVPSSMVNLQQ 429

Query: 422 LLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWP 481
           L  L L   +L   FP  L +   LS+LD+S  R S               +P    N  
Sbjct: 430 LERLNLGENNLNGSFPVELMALTSLSELDLSGNRFS-------------GAVPVSISNLS 476

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
           +L  LNL  N F+G IP S+G L  L +L+L    +SG +PV       +  + +  N F
Sbjct: 477 NLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNF 536

Query: 542 VGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNF 601
            G +P       S LR +NL SN   G  P     L  L  L ++ N +SGS+P  I N 
Sbjct: 537 SGVVPEGFSSLVS-LRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNC 595

Query: 602 TAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE 661
           +A+                     ++E  S  + G +    S L  ++ +D+  NN SGE
Sbjct: 596 SALE--------------------VLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGE 635

Query: 662 IPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSF-L 720
           IP E++    L SL+L HN   G IP +   + ++  +DLS N ++G+IP S++ +S  L
Sbjct: 636 IPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNL 695

Query: 721 NHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAPLSNCTE 763
            + N+S N L G+IP+S   +    S  +GN +LCG PL+   E
Sbjct: 696 VYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCE 739

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  213 bits (543), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 220/786 (27%), Positives = 336/786 (42%), Gaps = 146/786 (18%)

Query: 21  PSNHLASW---IGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLD 77
           P    ++W     +   C W G+ C++ + +V  LN  RS + G++ P + +LK L +LD
Sbjct: 47  PPQVTSTWKINASEATPCNWFGITCDD-SKNVASLNFTRSRVSGQLGPEIGELKSLQILD 105

Query: 78  LSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVE 137
           LS N+F G  IP  +G+   L  L+LS  GF+  IP  L +L  L  L L          
Sbjct: 106 LSTNNFSGT-IPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLY--------- 155

Query: 138 DISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSS 197
            I++L G  L E L                   +P L+VL L              ++++
Sbjct: 156 -INFLTG-ELPESL-----------------FRIPKLQVLYL--------------DYNN 182

Query: 198 LNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQF 257
           L              IP  +    +LV L + +N F G IP+   N +SL+ L L  N+ 
Sbjct: 183 LTG-----------PIPQSIGDAKELVELSMYANQFSGNIPESIGNSSSLQILYLHRNKL 231

Query: 258 NSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDII 317
             ++ +  +   +L  L +G N LQG +   G  N   + TLDLS+NE    +   L   
Sbjct: 232 VGSLPESLNLLGNLTTLFVGNNSLQGPV-RFGSPNCKNLLTLDLSYNEFEGGVPPALGNC 290

Query: 318 SACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLD 377
           S+     L++L +    +SG + + LG+ KNL  L LS+N +SG +P   G  SSL  L 
Sbjct: 291 SS-----LDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLK 345

Query: 378 LSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFP 437
           L++N L G I     G L +L       N  + +I  +      L  L +   +L    P
Sbjct: 346 LNDNQLVGGIPSA-LGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGELP 404

Query: 438 SWLHSQKHLSKLDISNTRISDIIPRW-----------FWNSIYQDTIPDCWMNWPDLRVL 486
             +   K L    + N      IP             F  +     IP    +   LR+L
Sbjct: 405 VEMTEMKKLKIATLFNNSFYGAIPPGLGVNSSLEEVDFIGNKLTGEIPPNLCHGRKLRIL 464

Query: 487 NLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGII---------------------PVP- 524
           NLG+N   G+IP S+G   ++R   LR N LSG++                     P+P 
Sbjct: 465 NLGSNLLHGTIPASIGHCKTIRRFILRENNLSGLLPEFSQDHSLSFLDFNSNNFEGPIPG 524

Query: 525 -FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQIL 583
              +C  L ++++  N F G IP  +G     L  +NL  N L G  P Q+ +  SL+  
Sbjct: 525 SLGSCKNLSSINLSRNRFTGQIPPQLGN-LQNLGYMNLSRNLLEGSLPAQLSNCVSLERF 583

Query: 584 DVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNS 643
           DV +N L+GSVP   +N+  + T                                     
Sbjct: 584 DVGFNSLNGSVPSNFSNWKGLTT------------------------------------- 606

Query: 644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRS-IESLDLS 702
                  + +S N FSG IP  +  LK L +L ++ N+F G+IP +IG +   I  LDLS
Sbjct: 607 -------LVLSENRFSGGIPQFLPELKKLSTLQIARNAFGGEIPSSIGLIEDLIYDLDLS 659

Query: 703 GNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCT 762
           GN ++G+IP  +  L  L  LN+S+N L G +     L S     ++ N   G P+ +  
Sbjct: 660 GNGLTGEIPAKLGDLIKLTRLNISNNNLTGSLSVLKGLTSLLHVDVSNNQFTG-PIPDNL 718

Query: 763 EKNVLA 768
           E  +L+
Sbjct: 719 EGQLLS 724

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	790
224072885	1024	predicted protein [Populus trichocarpa]	0.959	0.740	0.431	1e-172
350284743	978	receptor-like protein [Malus x domestica	0.965	0.780	0.425	1e-170
255581850	1082	leucine-rich repeat receptor protein kin	0.988	0.721	0.392	1e-168
209970605	974	HB03p [Malus floribunda]	0.963	0.781	0.417	1e-168
209970603	1038	AM19-5p [Malus floribunda]	0.979	0.745	0.406	1e-167
209970625	974	HB09p [Malus floribunda]	0.962	0.780	0.416	1e-167
209970607	1045	M18S-3Ap [Malus floribunda]	0.979	0.740	0.399	1e-167
209970612	977	HB04p [Malus floribunda]	0.981	0.793	0.419	1e-164
14330714	1015	HcrVf1 protein [Malus floribunda]	0.975	0.759	0.410	1e-164
315436720	1020	verticillium wilt resistance-like protei	0.955	0.740	0.422	1e-164

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 401/930 (43%), Positives = 536/930 (57%), Gaps = 172/930 (18%)

Query: 2   GCLESERVALIKLKQDFKDPSNHLASWIG-DVDCCEWGGVVCNNITGHVLELNLE----- 55
           GC + ER AL+K K D KDPSN LASW G   DCC W GV+C+N+TGHV+EL L      
Sbjct: 36  GCSQIERDALLKFKHDLKDPSNRLASWAGFGGDCCTWRGVICDNVTGHVIELRLRSISFA 95

Query: 56  ----------------RSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLR 99
                           +  L G+INP+LV LKHL  LDL  NDF G+QIP++IG + +L+
Sbjct: 96  DYLASSGASTQYEDYLKLILSGRINPSLVSLKHLRYLDLRNNDFGGVQIPKFIGLIGSLK 155

Query: 100 YLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLI 159
           +L+LS AGFAG IPH LGNLS+L +L+L   Y +  VE+++WL+  S LE LD S V L 
Sbjct: 156 HLDLSDAGFAGTIPHGLGNLSDLNYLNLHDYYSQFNVENLNWLSQLSSLEFLDLSLVHLG 215

Query: 160 KASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSI-----P 214
              +WL VIN+LPSL  L L  C+L    P+   NFSSL+ LDLS N   +++I     P
Sbjct: 216 NVFNWLEVINTLPSLVELHLSYCQLPPVPPILYVNFSSLSILDLSSNYVDESAISMLNFP 275

Query: 215 SWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYL 274
            WV  L  L+ L+L++N F+GPIP+G +NLT L+ LDLS N F+S+I +    F+ L+ L
Sbjct: 276 RWVSHLKTLLSLNLANNNFQGPIPNGLQNLTLLKALDLSINHFSSSIPEWLYGFEHLKLL 335

Query: 275 SLGYNRLQGTISSIGLENLTFIKTLDLSFN---------------------------ELG 307
           +LG N LQG +SS  + N+T + +LDLS N                           +L 
Sbjct: 336 NLGSNNLQGVLSS-AIGNMTSLISLDLSLNHELKFEGGIPGSFKKLCNLRTLSLSNVKLN 394

Query: 308 QDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS 367
           QDI+E+L+++  C + E+ESL L GC + GQLTN LG F+NL  L L  NS+SGP+P A 
Sbjct: 395 QDIAEVLEVLLGCVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNSISGPIPMAL 454

Query: 368 GELSSLTYLDLSNNNLNGM------------------------ISEIHFGNLTELAFFYA 403
           GEL SL  L LS+N LNG                         +SE+HF NL  L  F A
Sbjct: 455 GELVSLRSLVLSDNKLNGTLPKSFGELTKLEEMDISHNLFQGEVSEVHFANLKNLRNFSA 514

Query: 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRW 463
            GN +N +++  W+PP QL+ + LRS ++GP FP W+   +HLS LDISN+ IS  IP W
Sbjct: 515 AGNQLNLRVSPDWIPP-QLVFIDLRSWNVGPQFPKWVRPLEHLSYLDISNSSISSTIPIW 573

Query: 464 FWNSIY------------QDTIP-----DCWMNWP------------------DLRVLNL 488
           FW   +            Q  IP     D   ++P                  ++  L+L
Sbjct: 574 FWTMSFRMEYLNLSHNQIQGVIPSKLKLDFTASYPLVDLSSNQFKGPLPSIFSNVGALDL 633

Query: 489 GNNKFTGS----IPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGN 544
            NN F+GS    +   +  L +++ LNL  N LSG+IP  + +   LVA+ +  N+  GN
Sbjct: 634 SNNSFSGSMLNFLCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIKLSNNKLSGN 693

Query: 545 I------------------------------------------------PTWMGERFSRL 556
           I                                                P W+G+RFS +
Sbjct: 694 IPDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPAWIGKRFSSM 753

Query: 557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAI 616
            +LN+R+NK HG  P ++C+L+SLQILD+A+NRLS S+P C N  +AMAT   +  +  I
Sbjct: 754 VVLNMRANKFHGRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMAT--RNDSLGKI 811

Query: 617 YHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLN 676
           Y  S  + +  + + LVMKG +VEY++IL  VRSID+S N   GEIP EVT L  LQSLN
Sbjct: 812 YLDSGSSTF--DNVLLVMKGKVVEYSTILKFVRSIDLSSNALCGEIPEEVTRLSELQSLN 869

Query: 677 LSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPS 736
           LS NS  G+IPE IG++R +ES+D S NQ+SG+IPQSMS L+FL+HLNLSDN+L G+IPS
Sbjct: 870 LSQNSLTGRIPEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFLSHLNLSDNRLRGRIPS 929

Query: 737 STQLQSFGASSITGNDLCGAPLS-NCTEKN 765
            TQLQSFG SS +GN+LCG PLS NC+  N
Sbjct: 930 GTQLQSFGPSSFSGNELCGPPLSKNCSVDN 959

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284743|gb|AEQ27743.1| receptor-like protein [Malus x domestica]

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 381/895 (42%), Positives = 502/895 (56%), Gaps = 132/895 (14%)

Query: 3   CLESERVALIKLKQDFKDPSNHLASWIGD--VDCCEWGGVVCNNITGHVLELNLERSE-- 58
           C ESER AL+  KQD +DP N L+SW+ +   DCC W GVVC++ITGH+ EL+L  S+  
Sbjct: 37  CKESERQALLMFKQDLEDPGNRLSSWVAEEGSDCCSWTGVVCDHITGHIHELHLNISDSV 96

Query: 59  ------LGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWI 112
                  GGKINP+L+ LKHLN LDLS N+FQG QIP + GSM +L +LNL  + F G I
Sbjct: 97  WDFGSLFGGKINPSLLSLKHLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLGHSEFGGVI 156

Query: 113 PHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLP 172
           PH+LGNL++L +L+LS   Y+L+VE++ W++G SLL+HLD S V+L KASDWL V N LP
Sbjct: 157 PHKLGNLTSLRYLNLS-RLYDLKVENLQWISGLSLLKHLDLSWVNLSKASDWLQVTNMLP 215

Query: 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNI 232
           SL  L +  C+LH   PL + NF+SL  LDLS N F    +  WVF L +LV L LS   
Sbjct: 216 SLVELDMSYCQLHQITPLPTTNFTSLVVLDLSFNSFNSLML-RWVFSLKNLVSLHLSFCG 274

Query: 233 FRGPIPDGFKNLTSLRYLDLSYNQFN-STISDCFSNFDDLEYLSLGYNRLQGTISSIGLE 291
           F+G IP   +N+TSLR +DLS+N  +   I     N  +LE LSL  N+L G + S  ++
Sbjct: 275 FQGLIPSISQNITSLREIDLSHNSMSLDPIPKWLFNQKNLE-LSLEANQLTGQLPS-SIQ 332

Query: 292 NLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHT 351
           N+T +K L+L  N     I E L  ++   +  L   +       G++++ +G  K+L  
Sbjct: 333 NMTGLKVLNLEVNNFNSTIPEWLYSLNNLESLLLSYNYF-----CGEISSSIGNLKSLRH 387

Query: 352 LALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGM------------------------I 387
             LS NS+SGP+P + G LSSL  LD+S N  NG                         +
Sbjct: 388 FDLSSNSISGPIPMSLGNLSSLEKLDISGNQFNGTFIEVIGQLKMLMDLDISYNSLEGAM 447

Query: 388 SEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLS 447
           SE+ F NLT+L  F ANGNS   K +  WVPPFQL  L+L S HLGP +P WL +Q  L 
Sbjct: 448 SEVSFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLK 507

Query: 448 KLDISNTRISDIIPRWFWNSIYQ------------------------------------- 470
           +L +S T IS  IP WFWN   Q                                     
Sbjct: 508 ELSLSGTGISSTIPTWFWNLTSQVEYLNLSRNQLYGQIQNIVAVPFSTVDLSSNQFTGAL 567

Query: 471 DTIPDCWMNWPDLR-----------------------VLNLGNN---------------- 491
             +P   M WPDL                        VL+LGNN                
Sbjct: 568 PIVPTSLM-WPDLSNSSFSGSVFHFFCDRPDEPKQHYVLHLGNNFLTGKVPDCWMSWSSL 626

Query: 492 --------KFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVG 543
                     TG++P+SMG L  L SL LR+N L G +P   +NC+ L  +D+ EN F G
Sbjct: 627 EFLNLENNNLTGNVPMSMGYLQYLGSLRLRNNHLYGELPHSLQNCTWLSVVDLSENGFSG 686

Query: 544 NIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTA 603
           +IPTW+G   S L +L LRSNK  G  P ++C+L+SLQILD+A+N+LSG +P+C ++ +A
Sbjct: 687 SIPTWIGN--SLLNVLILRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHDLSA 744

Query: 604 MATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIP 663
           MA           +  S     + +   LV KG  +EY+ IL  V+ +D+S N   GEIP
Sbjct: 745 MADFSESFSPTRGFGTSAHMFELSDNAILVKKGIEMEYSKILGFVKGMDLSCNFMYGEIP 804

Query: 664 MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHL 723
            E+T L  LQSLNLS+N F G+IP  IGNM  +ESLD S NQ+ G+IPQSM++L+FL+HL
Sbjct: 805 EELTGLLALQSLNLSNNRFTGRIPSKIGNMAWLESLDFSMNQLDGEIPQSMTNLTFLSHL 864

Query: 724 NLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPL-SNCTEKNVLALCLSAGDGG 777
           NLS N L G+IP STQLQ    SS  GN+LCGAPL  NC+   V+       DGG
Sbjct: 865 NLSYNNLTGRIPESTQLQLLDQSSFVGNELCGAPLHKNCSPNGVIPPPTVEQDGG 919

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 392/998 (39%), Positives = 532/998 (53%), Gaps = 217/998 (21%)

Query: 1    MGCLESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNL------ 54
            +GC + ER AL+K K + +DPS  LASW  D +CC W GV+C+N TGHV EL+L      
Sbjct: 33   VGCNQIEREALMKFKDELQDPSKRLASWGADAECCTWHGVICDNFTGHVTELHLKILSSE 92

Query: 55   ------------------ERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMD 96
                              ERS   GK++ +L++LKHLN LDLS NDF GIQIP ++GSM+
Sbjct: 93   EYYSSSDALGYYFYEEYLERSSFRGKVSQSLLNLKHLNYLDLSNNDFGGIQIPPFLGSME 152

Query: 97   NLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG-SYYE---LRVEDISWLAGPSLLEHLD 152
            +LR+LNL GAGF G IPHQLGNLSNL +L+L+  S Y    + +E + WL+    LE LD
Sbjct: 153  SLRHLNLYGAGFGGRIPHQLGNLSNLQYLNLNAKSIYTSAVIYIESLQWLSSLRSLEFLD 212

Query: 153  TSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTS 212
             S VDL KA +WL V+N+LPSL  L L   +L+    L++ NFSSL  L+LS N F    
Sbjct: 213  FSGVDLSKAFNWLDVLNTLPSLGELHLSGSELYPIPLLSNVNFSSLLTLNLSANNF---V 269

Query: 213  IPSWVFGLSDLVFLDLSSNIFRGPIP---------------------------------- 238
            +PSW+F L+ L  LDLSSN F G IP                                  
Sbjct: 270  VPSWIFRLTTLATLDLSSNNFVGSIPIHLQNITTLRELYLSDSGLNSSIFNCLHGLAHLE 329

Query: 239  ----------DG-----FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQG 283
                      DG       NLTSLR LDLS+N     I     N   L+ L L  N L+G
Sbjct: 330  LLHLASNYNLDGKIPSTIGNLTSLRSLDLSFNSLEEGIPSAIGNLTSLKSLDLSRNSLEG 389

Query: 284  TI-SSIG----------------------LENLTFIKTLDLSFNELGQDISEILDIISAC 320
             I S+IG                        NL  +++L+LS N+L Q+I+E+ +I+S C
Sbjct: 390  DIPSAIGNLASLSSLDLSRNSLEGGIPTWFRNLCNLRSLELSINKLSQEINEVFEILSGC 449

Query: 321  AAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGE----------- 369
             +  LESL L   ++SG L+++L  FKNL  L L+DN +SGP+P   GE           
Sbjct: 450  VSDILESLILPSSQLSGHLSDRLVKFKNLAYLDLNDNLISGPIPENLGELNFLISLDLGN 509

Query: 370  -------------LSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKW 416
                         LS L Y+D+SNN+L G ISEIHF NLT LA F A+ N +  +++  W
Sbjct: 510  NKLNGSLPIDFGMLSKLNYVDISNNSLEGEISEIHFANLTNLATFKASSNQLRLRVSPDW 569

Query: 417  VPPFQLLA-LRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWN---SIYQ-- 470
             P FQ ++ + L+   +GP FP+W+HS K+L+ LD+SN+ IS  +P WF N    +YQ  
Sbjct: 570  FPAFQRVSTISLKCWKVGPQFPTWIHSLKYLAYLDLSNSTISSTLPTWFHNFSSRLYQIN 629

Query: 471  -------DTIPDCWMNWPDLRVLNLGNNKFTGSIPI--------------SMGTLTS--- 506
                    TIP   ++  D  +++L +N F GS+P                 G+++S   
Sbjct: 630  LSHNQMHGTIPYLSIDDSDYSLIDLSSNNFGGSMPFISSNPFGLDLSNNSFSGSISSFLC 689

Query: 507  -----LRSLNLRSNRLSGIIP--------------------------------------- 522
                 +  LNL  N  SG IP                                       
Sbjct: 690  YKPRTINVLNLGENLFSGEIPDCWMNWNYTNVIRLSNNYFSGNIPESIGTLSELSVLNIR 749

Query: 523  ---------VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQ 573
                     +  ++C+ L  LD+  NE  G I TWMG+ F    ILNLR NK HG  P +
Sbjct: 750  NNNLSGEMPISLKHCTSLQVLDLSGNELSGEITTWMGQHFQGTLILNLRGNKFHGFIPEE 809

Query: 574  ICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLV 633
            +C +++L ILD A N L+G++P+CINNFTA+ + G+ +         +       E SL+
Sbjct: 810  LCGMTALVILDFANNNLNGTIPRCINNFTALLS-GTSYLKDGKVLVDYGPTLTYSESSLI 868

Query: 634  MK-GFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGN 692
             + G +VEY++ L  VRS+D S N  SGEIP E+T+L+GL  LNLSHNS  G+IPE IG 
Sbjct: 869  ERNGKLVEYSTTLGFVRSLDFSNNKLSGEIPEEMTSLRGLLFLNLSHNSLTGRIPENIGA 928

Query: 693  MRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGND 752
            M++++ LD S NQ+SG+IPQSMSSL+FLN+LNLS NKL G IPSSTQLQSF +SS +GN+
Sbjct: 929  MKALQILDFSRNQLSGEIPQSMSSLTFLNNLNLSSNKLSGIIPSSTQLQSFDSSSFSGNN 988

Query: 753  LCGAPLS-NCT----EKNVLALCLSAGDGGTSTVISWM 785
            LCG PL+ +C+    + ++       G  G+   I W 
Sbjct: 989  LCGPPLTQSCSGDGEKPDIEKRTTEDGGNGSPEAIDWF 1026

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970605|gb|ACJ03065.1| HB03p [Malus floribunda]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 373/893 (41%), Positives = 500/893 (55%), Gaps = 132/893 (14%)

Query: 3   CLESERVALIKLKQDFKDPSNHLASWIGD--VDCCEWGGVVCNNITGHVLELNLERSE-- 58
           C ESER AL+  KQD +DP+N L+SW+ +   DCC W GVVC++ITGH+ EL+L  S+  
Sbjct: 37  CKESERQALLMFKQDLEDPANRLSSWVAEEGSDCCSWTGVVCDHITGHIHELHLNSSDSD 96

Query: 59  ------LGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWI 112
                  GGKIN +L+ LKHLN LDLS N F   QIP + GSM +L +LNL  + F G I
Sbjct: 97  WDFNRSFGGKINSSLLGLKHLNYLDLSNNYFSTTQIPSFFGSMTSLTHLNLGDSSFDGVI 156

Query: 113 PHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLP 172
           PHQLGNLS+L +L+LS   Y L+VE++ W++G SLL+ LD S V+L KASDWL V N LP
Sbjct: 157 PHQLGNLSSLRYLNLSS--YILKVENLQWISGLSLLKQLDLSFVNLSKASDWLQVTNMLP 214

Query: 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNI 232
            L  L +  C LHH  PL + NF+SL  LDLS N F  + +P WVF + +LV L L+   
Sbjct: 215 CLVQLIMSDCVLHHPPPLPTINFTSLVVLDLSYNSF-NSLMPRWVFNIKNLVSLRLTGCD 273

Query: 233 FRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLEN 292
           F+GPIP   +N+TSLR +DLS+N  N      +     +  L+L  N+L G + S  ++N
Sbjct: 274 FQGPIPGISQNITSLREIDLSFNSINLDPDPKWLFNQKILELNLEANQLSGQLPS-SIQN 332

Query: 293 LTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTL 352
           +T +K L+L  N+    ISE L  ++   +  L    LR     G++++ +G  K+L   
Sbjct: 333 MTCLKVLNLRENDFNSTISEWLYSLNNLESLLLSHNALR-----GEISSSIGNLKSLRHF 387

Query: 353 ALSDNSVSGPLPPASGELSSLT------------------------YLDLSNNNLNGMIS 388
            LS NS+SG +P + G LSSL                         YLD+S N+  GM+S
Sbjct: 388 DLSSNSISGSIPMSLGNLSSLVELDISGNQFKGTFIEVIGKLKLLAYLDISYNSFEGMVS 447

Query: 389 EIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSK 448
           E+ F NLT+L  F A GNS     +  W+ PFQL +LRL S HLGP +P WL +Q  L+ 
Sbjct: 448 EVSFSNLTKLKHFIAKGNSFTLNTSRDWLHPFQLESLRLDSWHLGPEWPMWLRTQTQLTD 507

Query: 449 LDISNTRISDIIPRWFWNSIYQDTIPDCWMNW----------PDLRVLNLGNNKFTGSIP 498
           L +S T IS  IP WFWN  +Q    +   N               V++LG+N+FTG++P
Sbjct: 508 LSLSGTGISSTIPTWFWNLTFQLGYLNLSHNQLYGEIQNIVVAPYSVVDLGSNQFTGALP 567

Query: 499 ISMGTLT-------------------------------------------------SLRS 509
           I   +L                                                   L +
Sbjct: 568 IVPTSLAWLDLSNSSFSGSVFHFFCDRPEEAKQLSILHLGNNLLTGKVPDCWRSWQYLAA 627

Query: 510 LNLRSNRLSGIIPVPFENCSQLVAL------------------------DMGENEFVGNI 545
           LNL +N L+G +P+      QL +L                        D+G N FVG+I
Sbjct: 628 LNLENNLLTGNVPMSMRYLQQLESLHLRNNHLYGELPHSLQNCSSLSVVDLGGNGFVGSI 687

Query: 546 PTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMA 605
           P WMG+  SRL +LNLRSN+  G  P +ICHL +LQILD+A N+LSG++P+C +N +AMA
Sbjct: 688 PIWMGKSLSRLNVLNLRSNEFEGDIPSEICHLKNLQILDLARNKLSGTIPRCFHNLSAMA 747

Query: 606 TIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPME 665
           T+      ++    +F     VE   +V KG  VEY  IL  V+ +D+S N   GEIP E
Sbjct: 748 TLS-----ESFSSITFMISTSVEASVVVTKGIEVEYTEILGFVKGMDLSCNFMYGEIPEE 802

Query: 666 VTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNL 725
           +T+L  LQSLNLSHN F G++P  IGNM  +ESLD S NQ+ G+IP SM++L+FL+HLNL
Sbjct: 803 LTDLLALQSLNLSHNRFTGRVPSKIGNMAMLESLDFSMNQLDGEIPPSMTNLTFLSHLNL 862

Query: 726 SDNKLVGKIPSSTQLQSFGASSITGNDLCGAPL-SNCTEKNVLALCLSAGDGG 777
           S N L G+IP STQLQS   SS  GN+LCGAPL  NC+   V+       DGG
Sbjct: 863 SYNNLTGRIPKSTQLQSLDQSSFVGNELCGAPLNKNCSANGVIPPPTVEQDGG 915

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970603|gb|ACJ03064.1| AM19-5p [Malus floribunda]

 Score =  597 bits (1538), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 383/943 (40%), Positives = 503/943 (53%), Gaps = 169/943 (17%)

Query: 3   CLESERVALIKLKQDFKDPSNHLASWIG--DVDCCEWGGVVCNNITGHVLELNLERSEL- 59
           C +SER AL+  KQD KDP+N L+SW+   D DCC W GVVC++ITGH+ EL+L  S   
Sbjct: 38  CKDSERQALLMFKQDLKDPANRLSSWVAEEDSDCCSWTGVVCDHITGHIHELHLNSSNFD 97

Query: 60  -------GGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWI 112
                  GGKINP+L+ LKHLN LDLS NDF   QIP + GSM +L +LNL  + F G I
Sbjct: 98  WYINSFFGGKINPSLLSLKHLNYLDLSNNDFSSTQIPSFFGSMTSLTHLNLGTSEFDGII 157

Query: 113 PHQLGNLSNLMHLDLSGSY-YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSL 171
           PH LGNLS+L +L+LS  Y   L+VE++ W+AG SLL+HLD S V+L KASDWL V N L
Sbjct: 158 PHNLGNLSSLRYLNLSSLYGPRLKVENLQWIAGLSLLKHLDLSYVNLSKASDWLQVTNML 217

Query: 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN 231
           PSL  L +  C+L   APL + NF+SL  LDLS N F    +P WVF L +LV L +S  
Sbjct: 218 PSLVELIMLDCQLDQIAPLPTPNFTSLVVLDLSINFFNSL-MPRWVFSLKNLVSLHISDC 276

Query: 232 IFRGPIPDGFKNLTSLRYLDLSY------------------------------------- 254
            F+GPIP   +N+TSLR +DLS+                                     
Sbjct: 277 GFQGPIPSISENITSLREIDLSFNYISLDLIPKWLFNQKFLKLSLEQNQLIGQLPSSIQN 336

Query: 255 -----------NQFNSTISDCFSNFDDLEYLSLGYNRLQGTI-SSIG------------- 289
                      N+FNSTI +   N ++LE L L  N  +G I SSIG             
Sbjct: 337 MTGLTTLNLEGNKFNSTIPEWLYNLNNLESLILSSNAFRGEISSSIGNMTSLVNLHLDNN 396

Query: 290 ---------LENLTFIKTLDLSFNELG-QDISEILDIISACAAFELESLFLRGCKISGQL 339
                    L +L  +K LDLS N    +  SE+ + +S C    ++SL LR   ISG +
Sbjct: 397 LLEGKIPNSLGHLCKLKVLDLSENHFTVRRPSEMFESLSRCGPHGIKSLSLRYTNISGPI 456

Query: 340 TNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
              LG   +L  L +S N   G      G+L  LT LD+S N+L G +SE  F NLT+L 
Sbjct: 457 PMSLGNLSSLEKLDISINQFDGTFTEVIGQLKMLTDLDISYNSLEGAVSEAFFSNLTKLK 516

Query: 400 FFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
            F ANGNS  +K +  W+PPFQL +L+L S HLGP +P WL +Q  L+ L +S T IS  
Sbjct: 517 HFIANGNSFTWKTSRDWLPPFQLESLQLDSWHLGPEWPMWLQTQTQLTDLSLSGTGISSA 576

Query: 460 IPRWFWNSIYQDTIPDCWMNW----------PDLRVLNLGNNKFTGSIPISMGTL----- 504
           IP WFWN   Q    +   N               +++L +N+FTGS+PI   +L     
Sbjct: 577 IPTWFWNLTSQVKYLNLSYNQLYGEIQNIFVAQYSLVDLSSNRFTGSLPIVPASLWWLDL 636

Query: 505 --------------------------------------------TSLRSLNLRSNRLSGI 520
                                                         L  LNL +N L+G 
Sbjct: 637 SNSSFSGSVFHFFCDRTYELKTTYVLDLGNNLLSGKIPDCWMNWQELEVLNLENNHLTGN 696

Query: 521 IPV------------------------PFENCSQLVALDMGENEFVGNIPTWMGERFSRL 556
           +P+                          +NC+ L  LD+G N FVG+IP W+G+  S L
Sbjct: 697 VPMSLGYLQRLRSLHLRNNHLDGELPHSLQNCTSLSILDLGGNGFVGSIPIWIGKSLSEL 756

Query: 557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAI 616
           +ILNLRSN+  G  P ++C+L SLQILD+A N+LSG+  +C +N +AMA +         
Sbjct: 757 QILNLRSNEFKGDIPYEVCYLKSLQILDLARNKLSGTTSRCFHNLSAMAILSESFSPTTF 816

Query: 617 YHASFENDY-IVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSL 675
              S    +  +E   LV KG  +EY+ IL  V+S+D+S N  SGEIP  +T++  LQSL
Sbjct: 817 QMWSSAGSFSFLENAILVTKGREMEYSKILGFVKSMDLSCNFLSGEIPEGLTSVLALQSL 876

Query: 676 NLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIP 735
           NLS+N F G+IP  IGNM  +ESLD S N++ G IP SM++L+FL++LNLS N L G+IP
Sbjct: 877 NLSNNRFTGRIPSKIGNMVRLESLDFSMNELHGGIPPSMTTLTFLSYLNLSYNNLTGRIP 936

Query: 736 SSTQLQSFGASSITGNDLCGAPL-SNCTEKNVLALCLSAGDGG 777
            STQLQSF  SS  GN+LCG PL +NC+   V        DGG
Sbjct: 937 ESTQLQSFNQSSFVGNELCGRPLNNNCSANGVKPPPKVEQDGG 979

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970625|gb|ACJ03073.1| HB09p [Malus floribunda]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 372/894 (41%), Positives = 499/894 (55%), Gaps = 134/894 (14%)

Query: 3   CLESERVALIKLKQDFKDPSNHLASWIGD--VDCCEWGGVVCNNITGHVLELNLERS--- 57
           C ESER AL+  KQD +DP+N L+SW+ +   DCC W GVVC++ITGH+ EL+L  S   
Sbjct: 37  CKESERQALLMFKQDLEDPANRLSSWVAEEGSDCCSWTGVVCDHITGHIHELHLNNSNSV 96

Query: 58  -----ELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWI 112
                  GGKIN +L+ LKHLN LDLS N F   QIP + GSM +L +LNL  + F G I
Sbjct: 97  VDFNRSFGGKINSSLLGLKHLNYLDLSNNYFSTTQIPSFFGSMTSLTHLNLGDSSFDGVI 156

Query: 113 PHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLP 172
           PHQLGNLS+L +L+LS   Y L+VE++ W++G SLL+ LD S V+L KASDWL V N LP
Sbjct: 157 PHQLGNLSSLRYLNLSS--YSLKVENLQWISGLSLLKQLDLSFVNLSKASDWLQVTNMLP 214

Query: 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNI 232
            L  L +  C LH   PL + NF+SL  LDLS N F   + P WVF + +LV L L+   
Sbjct: 215 CLVELIMSDCVLHQTPPLPTINFTSLVVLDLSYNSFNSLT-PRWVFSIKNLVSLHLTGCG 273

Query: 233 FRGPIPDGFKNLTSLRYLDLSYNQFN-STISDCFSNFDDLEYLSLGYNRLQGTISSIGLE 291
           F+GPIP   +N+TSLR +DLS+N  +   I     N   LE L+L  N++ G + S  ++
Sbjct: 274 FQGPIPGISQNITSLREIDLSFNSISLDPIPKWLFNKKILE-LNLEANQITGQLPS-SIQ 331

Query: 292 NLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHT 351
           N+T +K L+L  N+    I + L  ++   +  L    LR     G++++ +G  K+L  
Sbjct: 332 NMTCLKVLNLRENDFNSTIPKWLYSLNNLESLLLSHNALR-----GEISSSIGNLKSLRH 386

Query: 352 LALSDNSVSGPLPPASGELSS------------------------LTYLDLSNNNLNGMI 387
             LS NS+SGP+P + G LSS                        L YLD+S N+  GM+
Sbjct: 387 FDLSGNSISGPIPMSLGNLSSLVELDISGNQFNGTFIEVIGKLKLLAYLDISYNSFEGMV 446

Query: 388 SEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLS 447
           SE+ F +LT+L  F A GNS   K +  W+PPFQL +L+L S HLGP +P WL +Q  L+
Sbjct: 447 SEVSFSHLTKLKHFIAKGNSFTLKTSRNWLPPFQLESLQLDSWHLGPEWPMWLRTQTQLT 506

Query: 448 KLDISNTRISDIIPRWFWNSIYQDTIPDCWMNW----------PDLRVLNLGNNKFTGSI 497
            L +S T IS  IP WFWN  +Q    +   N               V++LG+NKFTG++
Sbjct: 507 DLSLSGTGISSTIPTWFWNLTFQLGYLNLSHNQLYGEIQNIVAAPYSVVDLGSNKFTGAL 566

Query: 498 PISMGTLT-------------------------------------------------SLR 508
           PI   +L                                                   L 
Sbjct: 567 PIVPTSLAWLDLSNSSFSGSVFHFFCDRPEEAKQLSILHLGNNLLTGKVPDCWRSWQGLA 626

Query: 509 SLNLRSNRLSGIIPVPFENCSQLVAL------------------------DMGENEFVGN 544
           +LNL +N L+G +P+      QL +L                        D+G N FVG+
Sbjct: 627 ALNLENNLLTGNVPMSMRYLQQLESLHLRNNHLYGELPHSLQNCSSLSVVDLGGNGFVGS 686

Query: 545 IPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAM 604
           IP W+G+  SRL +LNLRSN+  G  P +IC+L +LQILD+A N+LSG++P+C +N +AM
Sbjct: 687 IPIWIGKSLSRLNVLNLRSNEFEGDIPSEICYLKNLQILDLARNKLSGTIPRCFHNLSAM 746

Query: 605 ATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPM 664
           AT       ++    +F     VE   +V KG  VEY  IL  V+ +D+S N   GEIP 
Sbjct: 747 ATFS-----ESFSSITFRTGTSVEASIVVTKGREVEYTEILGFVKGMDLSCNFMYGEIPE 801

Query: 665 EVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLN 724
           E+T+L  LQSLNLSHN F G++P  IGNM  +ESLD S NQ+ G+IP SM++L+FL+HLN
Sbjct: 802 ELTDLLALQSLNLSHNRFTGRVPSKIGNMAMLESLDFSMNQLDGEIPPSMTNLTFLSHLN 861

Query: 725 LSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPL-SNCTEKNVLALCLSAGDGG 777
           LS N L G+IP STQLQS   SS  GN+LCGAPL  NC    V+       DGG
Sbjct: 862 LSYNNLTGRIPKSTQLQSLDQSSFVGNELCGAPLNKNCRANGVIPPPTVEQDGG 915

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 380/951 (39%), Positives = 507/951 (53%), Gaps = 177/951 (18%)

Query: 3   CLESERVALIKLKQDFKDPSNHLASWIGD--VDCCEWGGVVCNNITGHVLELNLERSEL- 59
           C ESER AL+  KQD  DP+N LASW+ +   DCC W  VVC+++TGH+ EL+L+ S   
Sbjct: 37  CKESERQALLMFKQDLNDPANQLASWVAEEGSDCCSWTRVVCDHMTGHIQELHLDGSYFH 96

Query: 60  --------------GGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSG 105
                          GKINP+L+ LKHLN LDLS N+FQG QIP + GSM +L +LNL+ 
Sbjct: 97  PYSDPFDLDSDSCFSGKINPSLLSLKHLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLAY 156

Query: 106 AGFAGWIPHQLGNLSNLMHLDLSGSY-YELRVEDISWLAGPSLLEHLDTSDVDLIKASDW 164
           + F G IPH+LGNLS+L +L+LS S  + L+VE++ W++G SLL+HLD S V+L KASDW
Sbjct: 157 SEFYGIIPHKLGNLSSLRYLNLSSSNGFNLKVENLQWISGLSLLKHLDLSFVNLSKASDW 216

Query: 165 LLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLV 224
           L V N LPSL  L + +C+LH   PL + NF+SL  LDLSGN F    +P WVF + +LV
Sbjct: 217 LQVTNMLPSLVELDMSNCQLHQITPLPTTNFTSLVVLDLSGNRFNSL-MPMWVFSIKNLV 275

Query: 225 FLDLSSNIFRGPIPDGFKNLTSLRYLD------------------------LSYNQFNST 260
            L L    F+GPIP   +N+TSLR +D                        L  NQ    
Sbjct: 276 SLRLIYCWFQGPIPSISQNITSLREIDLSLNSISLDPIPKWLFNQKDLALSLESNQLTGQ 335

Query: 261 ISDCFSNFDDLEYLSLGYNRLQGTI-------------------------SSIG------ 289
           +     N   L+ L+LG N    TI                         SSIG      
Sbjct: 336 LPSSIQNMTGLKVLNLGSNDFNSTIPEWLYSLNNLESLLLSSNALRGEISSSIGNMTSLV 395

Query: 290 ----------------LENLTFIKTLDLSFNELG-QDISEILDIISACAAFELESLFLRG 332
                           L +L  +K LDLS N    Q  S I + +S C    ++SL LR 
Sbjct: 396 NLHLDNNLLEGKIPNSLGHLCKLKDLDLSKNHFTVQRPSVIFESLSRCGPNGIKSLSLRY 455

Query: 333 CKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHF 392
             ISG +   LG   +L  L +S N  +G      G+L  LT LD+SNN+L   +SE+ F
Sbjct: 456 TNISGPIPMSLGNLSSLEKLDISGNQFNGTFTEVIGQLKMLTDLDISNNSLEDAVSEVSF 515

Query: 393 GNLTELAFFYANGNSVNFKINSKWVPPF------------------------QLLALRLR 428
            NLT+L  F ANGNS   K +  WVPPF                        QL  L L 
Sbjct: 516 SNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPEWPMWLRTQTQLTRLSLS 575

Query: 429 SCHLGPHFPSWL-------------HSQKH----------LSKLDISNTRISDIIP---- 461
              +    P+W              H+Q +          +S +D+S+   +  +P    
Sbjct: 576 CTGISSTVPTWFWNLTSKVRYLNLSHNQLYGQIQNIVAGPMSVVDLSSNHFTGALPIVPT 635

Query: 462 RWFW--------------------------------NSIYQDTIPDCWMNWPDLRVLNLG 489
             FW                                N++    +PDCWM+W  L  LNL 
Sbjct: 636 SLFWLDLSNSSFSGSVFHFFCDRPDEPRQLHFLHLGNNLLSGKVPDCWMSWQYLSFLNLE 695

Query: 490 NNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWM 549
           NN  TG++P+SMG L  L SL+LR+N L G +P   +NC++L  +D+GEN F G+IP W+
Sbjct: 696 NNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTRLSVVDLGENGFSGSIPIWI 755

Query: 550 GERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGS 609
           G+  S L+ILNLRSNK  G  P ++C+L+SLQILD+A+N+LSG +P+C +N +AMA    
Sbjct: 756 GKSLSELQILNLRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSAMADFSE 815

Query: 610 HHQ--VKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVT 667
                V  I +       +  +  LV KG  +EY  IL  V+ +D+S N   GEIP E+T
Sbjct: 816 SRDASVYVILNGISVPLSVTAKAILVTKGREMEYGKILKFVKFMDLSCNFMYGEIPEELT 875

Query: 668 NLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD 727
           +L  L+SLNLS+N F G+IP  IGNM  +ESLD S NQ+ G+IPQSM++L+FL+HLNLS+
Sbjct: 876 DLLALKSLNLSNNHFTGRIPSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFLSHLNLSN 935

Query: 728 NKLVGKIPSSTQLQSFGASSITGNDLCGAPLS-NCTEKNVLALCLSAGDGG 777
           N L G+IP STQLQS   SS  GN+LCGAPL+ NC+E  V+       DGG
Sbjct: 936 NNLTGRIPKSTQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGG 986

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970612|gb|ACJ03068.1| HB04p [Malus floribunda]

 Score =  586 bits (1511), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 383/913 (41%), Positives = 506/913 (55%), Gaps = 138/913 (15%)

Query: 3   CLESERVALIKLKQDFKDPSNHLASWIGD--VDCCEWGGVVCNNITGHVLELNLERSE-- 58
           C ESER AL+  KQD KDP+N L+SW+ +   DCC W GVVC++ITGH+ EL+L  S   
Sbjct: 37  CKESERQALLMFKQDLKDPANRLSSWVAEEGSDCCSWTGVVCDHITGHIHELHLNSSYSD 96

Query: 59  ------LGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWI 112
                   GKIN +L+ LKHLN LDLS N+F   QIP + GSM +L +LNL  + F G I
Sbjct: 97  WHFNSFFSGKINSSLLSLKHLNYLDLSNNEFI-TQIPSFFGSMTSLTHLNLGNSAFGGVI 155

Query: 113 PHQLGNLSNLMHLDLSGSY-YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSL 171
           PH+LGNLS+L +L++S  Y   L+VE++ W++G SLLEHLD S VDL KASDWL V N L
Sbjct: 156 PHKLGNLSSLRYLNISNIYGPSLKVENLKWISGLSLLEHLDLSSVDLSKASDWLQVTNML 215

Query: 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN 231
           PSL  L +  C+LH   PL + NF+SL  LDLSGN F    +  WVF L +LV L LS  
Sbjct: 216 PSLVELDMSDCELHQIPPLPTPNFTSLVVLDLSGNSFNSLML-RWVFSLKNLVSLHLSGC 274

Query: 232 IFRGPIPDGFKNLTSLRYLDLSYNQFN-STISDCFSNFDDLEYLSLGYNRLQGTISSIGL 290
            F+GPIP   +N+TSLR +DLS N  +   I     N + LE LSL  N+L G + S  +
Sbjct: 275 GFQGPIPSISQNITSLREIDLSSNSISLDPIPKWLFNKNFLE-LSLEANQLTGQLPS-SI 332

Query: 291 ENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLH 350
           +N+T + +L+L  N+    I E L  ++   +  L    LR     G++ + +G  K+L 
Sbjct: 333 QNMTGLTSLNLRGNKFNSTIPEWLYSLNNLESLLLSRNALR-----GEILSSIGNLKSLR 387

Query: 351 TLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN------------------------GM 386
              LS NS+SGP+  + G LSSL  LD+S N  N                        G+
Sbjct: 388 HFDLSHNSMSGPM--SLGNLSSLVELDISGNQFNGTFIEVIGKLKMLTDLDISYNWFEGV 445

Query: 387 ISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHL 446
           +SE+ F NLT+L  F A GNS   K +  W+PPFQL +L L S HLGP +P WL +Q  L
Sbjct: 446 VSEVSFSNLTKLKHFIAKGNSFTLKTSQDWLPPFQLESLLLDSWHLGPKWPMWLQTQTQL 505

Query: 447 SKLDISNTRISDIIPRWFWNSIYQ----------------------DTIPDCWMN----- 479
           + L +S+T IS  IP WFWN  +Q                      D++ D   N     
Sbjct: 506 TDLSLSDTGISSTIPTWFWNLTFQVQYLNLSHNQLYGEIQNIVAFPDSVVDLGSNQFTGA 565

Query: 480 ---------WPDLR-----------------------VLNLGNNKFTGSIPISMGTLTSL 507
                    W DL                        +L+LGNN  TG +P       SL
Sbjct: 566 LPIVPTTLYWLDLSNSSFSGSVFHFFCGRRDKPYTLDILHLGNNLLTGKVPDCWMNWPSL 625

Query: 508 RSLNLRSNRLSGIIPV------------------------PFENCSQLVALDMGENEFVG 543
             LNL +N L+G +P+                          +NC+ L  +D+G N FVG
Sbjct: 626 GFLNLENNYLTGNVPMSMGYLHKLQSLHLRNNHLYGELPHSLQNCASLSVVDLGGNGFVG 685

Query: 544 NIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTA 603
           +IP WM +  S L +LNLRSNK  G  P ++C+L SLQILD+A+N+LSG +P+C +N +A
Sbjct: 686 SIPIWMVKSLSGLHVLNLRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSA 745

Query: 604 MATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIP 663
           MA       +   +   +E   + E   LV KG  +EY  IL  V+ ID+S N   GEIP
Sbjct: 746 MADFSESFSLSN-FSVLYEFG-VPENAILVTKGIEMEYRKILGFVKGIDLSCNFMYGEIP 803

Query: 664 MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHL 723
            E+T+L  LQSLNLS+N F  +IP  IGNM  +ESLD S NQ+ G+IP SM++L+FL+HL
Sbjct: 804 EELTSLLALQSLNLSNNRFTRRIPSKIGNMARLESLDFSMNQLDGEIPPSMTNLTFLSHL 863

Query: 724 NLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLS-NCTEKNVLALCLSAGDGGTSTVI 782
           NLS N L G+IP STQLQS   SS  GN+LCGAPL+ NC+   V+       DGG    I
Sbjct: 864 NLSYNNLTGRIPESTQLQSLDQSSFIGNELCGAPLNKNCSANGVIPPPTVEQDGGEGYSI 923

Query: 783 -----SWMALGRG 790
                 +M+LG G
Sbjct: 924 LEDGWFYMSLGVG 936

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14330714|emb|CAC40825.1| HcrVf1 protein [Malus floribunda]

 Score =  586 bits (1511), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 379/924 (41%), Positives = 496/924 (53%), Gaps = 153/924 (16%)

Query: 3   CLESERVALIKLKQDFKDPSNHLASWIGDVD--CCEWGGVVCNNITGHVLELNLERSE-- 58
           C ESER AL+  KQD KDP+N LASW+ + D  CC W GVVC++ITGH+ EL+L  S+  
Sbjct: 37  CKESERQALLIFKQDLKDPANRLASWVAEEDSNCCSWTGVVCDHITGHIHELHLNNSDSH 96

Query: 59  ------LGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWI 112
                  GGKINP+L+ LKHLN LDLS N+F+G QIP + GSM +L +LNL  + F G I
Sbjct: 97  WDFESFFGGKINPSLLSLKHLNFLDLSYNNFEGTQIPSFFGSMTSLTHLNLGFSWFDGVI 156

Query: 113 PHQLGNLSNLMHLDLSGSY-YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSL 171
           PH LGNLS+L +L LS  Y   L+ E++ W++G SLL+HLD S V+L KASDWL V N L
Sbjct: 157 PHNLGNLSSLRYLYLSSFYNSNLKAENLQWISGLSLLKHLDLSYVNLSKASDWLQVTNML 216

Query: 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN 231
           PSL  L +  C+L    PL + NF+SL  LDLS N F  + +P WVF L +LV L L   
Sbjct: 217 PSLVELDMSGCQLDQIPPLPTPNFTSLVVLDLSENFF-NSLMPRWVFSLKNLVSLHLRFC 275

Query: 232 IFRGPIPDGFKNLTSLRYLDLSY------------------------NQFNSTISDCFSN 267
            F+GPIP   +N+TSLR +DLS                         NQ    +   F N
Sbjct: 276 GFQGPIPSISQNITSLREIDLSENSISLDPIPKWLFNQKDLALSLKSNQLTGQLPSSFQN 335

Query: 268 FDDLEYLSL------------------------GYNRLQGTISS----------IGLEN- 292
              L+ L+L                         YN L+G ISS          + LEN 
Sbjct: 336 MTGLKVLNLESNYFNSTIPKWLYGLNNLESLLLSYNALRGEISSSIGNMTSLVNLNLENN 395

Query: 293 ------------LTFIKTLDLSFNELG-QDISEILDIISACAAFELESLFLRGCKISGQL 339
                       L  +K +DLS N    +  SEI + +S C    ++SL LR   ISG +
Sbjct: 396 QLQGKIPNSLGHLCKLKVVDLSENHFTVRRPSEIFESLSGCGPDGIKSLSLRYTNISGPI 455

Query: 340 TNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
              LG   +L  L +S N  +G      G+L  LT LD+S N   G++SEI F NLT+L 
Sbjct: 456 PMSLGNLSSLEKLDISGNHFNGTFTEVIGQLKMLTDLDISYNWFEGVVSEISFSNLTKLK 515

Query: 400 FFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
            F A GNS   K +  WVPPFQL  LRL S HLGP +P WL +Q  L +L +S T IS  
Sbjct: 516 HFVAKGNSFTLKTSRDWVPPFQLETLRLDSWHLGPKWPMWLRTQTQLKELSLSGTGISST 575

Query: 460 IPRWFWNSIYQDTIPDCWMNW---------PDLRVLNLGNNKFTGSIPISMGTLT----- 505
           IP WFWN  +     +   N              V++LG+N+FTG++PI   +L      
Sbjct: 576 IPTWFWNLTFHVWYLNLSHNQLYGQIQNIVAGRSVVDLGSNQFTGALPIVPTSLVWLDLS 635

Query: 506 --------------------------------------------SLRSLNLRSNRLSGII 521
                                                        L  +NL +N L+G +
Sbjct: 636 NSSFSGSVFHFFCDRPDETKLLYILHLGNNFLTGKVPDCWMSWPQLGFVNLENNNLTGNV 695

Query: 522 PV-------PFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQI 574
           P+         +NC+ L  +D+ EN F G+IP W+G+  S L +LNLRSNK  G  P ++
Sbjct: 696 PMSMGELPHSLQNCTMLSFVDLSENGFSGSIPIWIGKSLSWLYVLNLRSNKFEGDIPNEV 755

Query: 575 CHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVM 634
           C+L SLQILD+A+N+LSG +P+C +N +A+A            +   E     E   LV 
Sbjct: 756 CYLQSLQILDLAHNKLSGMIPRCFHNLSALANFSESFFPFITGNTDGE---FWENAILVT 812

Query: 635 KGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMR 694
           KG  +EY+ IL  V+ +D+S N   GEIP E+T L  LQSLNLS+N F G+IP  IGNM 
Sbjct: 813 KGTEMEYSKILGFVKGMDLSCNFMYGEIPKELTGLLALQSLNLSNNRFTGRIPSKIGNMA 872

Query: 695 SIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLC 754
            +ESLD S NQ+ G+IP SM++L+FL+HLNLS N L G+I  STQLQS   SS  GN+LC
Sbjct: 873 QLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRILESTQLQSLDQSSFVGNELC 932

Query: 755 GAPLS-NCTEKNVLALCLSAGDGG 777
           GAPL+ NC+E  V+       DGG
Sbjct: 933 GAPLNKNCSENGVIPPPTVEHDGG 956

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 385/912 (42%), Positives = 510/912 (55%), Gaps = 157/912 (17%)

Query: 1   MGCLESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLE----- 55
           + C E ER AL+KLKQD  DPS  LASW  +++CC W GV+C+N+TG+V++L L      
Sbjct: 35  VSCPEVERQALLKLKQDLIDPSGRLASWGTNLNCCNWSGVICDNLTGNVIQLRLRNPLDP 94

Query: 56  ------------RSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNL 103
                       +    GKINP+L+DLKHL  LDLSG++F GIQIPE++GSM  LRYLNL
Sbjct: 95  YNGFYIPSEAYAKMWFSGKINPSLLDLKHLRYLDLSGSNFGGIQIPEFLGSMHTLRYLNL 154

Query: 104 SGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASD 163
           S AGF G +P QLGNL+NL  LDL      +  E++ WL+    L+HLD S V+L KASD
Sbjct: 155 SAAGFGGVVPPQLGNLTNLHVLDLHDFSSLVYAENLQWLSHLVKLKHLDLSSVNLSKASD 214

Query: 164 WLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL 223
           W  V N+LPSL  + L  C+LH     A  NFSSL+ LDLS N F    IP W+F L+ L
Sbjct: 215 WFQVTNTLPSLVEIHLSGCQLHRLPLQADVNFSSLSILDLSSNSFSNPLIPGWIFKLNSL 274

Query: 224 VFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQG 283
           + LDLS N F+G +P G ++L+SLRYL+L +N F S I         LE+L+LG N   G
Sbjct: 275 LSLDLSHNNFQGQLPHGLRSLSSLRYLNLYWNNFKSAIPSWLYGLTSLEFLNLGSNYFHG 334

Query: 284 TISSIGLENLTFIKTLDLSFNE------------------------LGQDISEILDIISA 319
           +IS+ G +NLT + TLDLS NE                        L +D+SEIL  +S+
Sbjct: 335 SISN-GFQNLTSLTTLDLSDNELTGAVPNSMGSLCSLKKIKLSGLHLSRDLSEILQALSS 393

Query: 320 --CAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLD 377
             C    LESL+L  C+I G LT+++ LFKNL  L+LS NS+SG +P + G L+SL  LD
Sbjct: 394 PGCLLNGLESLYLDSCEIFGHLTDRILLFKNLADLSLSRNSISGSIPASLGLLASLRTLD 453

Query: 378 LSNNNLN------------------------GMISEIHFGNLTELAFFYANGNSVNFKIN 413
           LS N +N                        G++SE+HF NLT L  F A+GN +  + +
Sbjct: 454 LSQNRVNGTLPESIGQLWKMEKLWLSHNMLEGVVSEVHFANLTRLRLFQASGNPLVLEAS 513

Query: 414 SKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW-------- 465
            +WVPPFQL  + L S HLGP FPSWL SQ+    LDIS T I D  P WFW        
Sbjct: 514 PEWVPPFQLGVMALSSWHLGPKFPSWLRSQRDFVYLDISVTGIIDTFPNWFWNLSTIYFS 573

Query: 466 -----NSIYQD------TIPDCWMNWPDL----------------RVLNLGNNKFTGSIP 498
                N IY +      T P   + + DL                  L+L +N F+G I 
Sbjct: 574 LNLSHNQIYGELPHRIGTSPVADLVYVDLSFNHFDGPLPCLSSKVNTLDLSSNLFSGPIS 633

Query: 499 ----ISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPT------- 547
                 M     L +L+L  N LSG IP  + N   +V++D+  N   G IP+       
Sbjct: 634 NLLCCKMEEPYWLETLHLADNHLSGEIPDCWMNWPNMVSVDLENNSLSGVIPSSMGSLNL 693

Query: 548 -----------------------------------------WMGERFSRLRILNLRSNKL 566
                                                    W+GE+ S   I++L SN+ 
Sbjct: 694 LQSLHLRKNNLSGVLPSSLQNCTSLLAIDLGENHFVGNIPGWIGEKLSDSIIISLGSNRF 753

Query: 567 HGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYI 626
            G  P  +C LS L ILD+A+N LSG++PKC  N +AMA   + +    I +A       
Sbjct: 754 QGQIPDNLCSLSYLTILDLAHNNLSGTIPKCFMNLSAMA--ANQNSSNPISYAFGHFGTS 811

Query: 627 VEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKI 686
           +E + L++KG ++EY+S L LV S+D+S NN +GEIP  +T+L GL+ LNLS+N   G+I
Sbjct: 812 LETLLLMIKGILLEYSSTLQLVTSMDLSDNNLAGEIPAGMTDLLGLRFLNLSNNQLKGRI 871

Query: 687 PETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGAS 746
           P+ IGN+R +ES+DLS NQ+ G+IP SMS+L+FL++LNLS+N L GKIPSSTQLQSF  S
Sbjct: 872 PKNIGNLRLLESIDLSRNQLRGEIPPSMSALTFLSYLNLSENNLTGKIPSSTQLQSFDIS 931

Query: 747 SITGNDLCGAPL 758
           S  GN LCG PL
Sbjct: 932 SYDGNHLCGPPL 943

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	790
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.862	0.752	0.333	1.4e-73
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.908	0.834	0.285	1.7e-66
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.949	0.857	0.296	1.1e-64
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.920	0.619	0.302	1.5e-63
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.834	0.812	0.302	3.5e-59
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.882	0.739	0.298	7e-59
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.9	0.819	0.277	2.3e-54
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.797	0.743	0.284	3.1e-54
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.826	0.782	0.287	3.4e-54
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.926	0.847	0.294	4.8e-54

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 250/750 (33%), Positives = 355/750 (47%)

Query:     3 CLESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNL-------- 54
             C+ +ER AL+  +    D S+ L SW G  DCC W GV+C+  T HV++++L        
Sbjct:    33 CISTERQALLTFRAALTDLSSRLFSWSGP-DCCNWPGVLCDARTSHVVKIDLRNPSQDVR 91

Query:    55 ----ERSELGGKINPAXXXXXXXXXXXXSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
                 +R  L GKI+P+            S NDF  ++IPE+IG + +LRYLNLS + F+G
Sbjct:    92 SDEYKRGSLRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNLSSSSFSG 151

Query:   111 WIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINS 170
              IP  LGNLS L  LDL   Y E      S+  G S    L  S++       WL  ++S
Sbjct:   152 EIPTSLGNLSKLESLDL---YAE------SF--GDSGTLSLRASNLR------WLSSLSS 194

Query:   171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKT--SIPSWVFGLSDLVFL-- 226
               SLK L +    L         +FS ++AL    +LF     ++P  +   +DL  L  
Sbjct:   195 --SLKYLNMGYVNLSGAGETWLQDFSRISALK-ELHLFNSELKNLPPTLSSSADLKLLEV 251

Query:   227 -DLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN-RLQGT 284
              DLS N    PIP+    LT+LR L L ++    +I   F N   LE L L  N  LQG 
Sbjct:   252 LDLSENSLNSPIPNWLFGLTNLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGE 311

Query:   285 ISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLG 344
             I S+ L +L  +K LDLS NEL   I   LD  S      L  L L   K++G L   LG
Sbjct:   312 IPSV-LGDLPQLKFLDLSANELNGQIHGFLDAFSRNKGNSLVFLDLSSNKLAGTLPESLG 370

Query:   345 LFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYAN 404
               +NL TL LS NS +G +P + G ++SL  LDLSNN +NG I+E   G L EL      
Sbjct:   371 SLRNLQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAE-SLGQLAELVDLNLM 429

Query:   405 GNSVNFKIN-SKWVPPFQLLALRLRS---CHLGPHFPS-WLHSQKHLSKLDISNTRISDI 459
              N+    +  S +V    L ++RL +     L    PS W+   + L  + I N RI  +
Sbjct:   430 ANTWGGVLQKSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFR-LELIQIENCRIG-L 487

Query:   460 IPRWFW-----------NSIYQDTIPDCWMNWPDLRV--LNLGNNKFTGSIPISMGXXXX 506
              P W             N+  +DTIPD W +    +V  L L NN+  G +P  +     
Sbjct:   488 FPMWLQVQTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNRIKGRLPQKLAFPKL 547

Query:   507 XXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKL 566
                         G  P+   N ++L    + EN F G++P  +     R+  + L SN  
Sbjct:   548 NTIDLSSNNFE-GTFPLWSTNATEL---RLYENNFSGSLPQNIDVLMPRMEKIYLFSNSF 603

Query:   567 HGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN-FTAMATIGSHHQVKAIYHASFENDY 625
              G  P  +C +S LQIL +  N  SGS PKC +  F       S + +      S     
Sbjct:   604 TGNIPSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENNLSGEIPESLGMLP 663

Query:   626 IVEEISL---VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSF 682
              +  + L    ++G + E     + + +ID+  N  +G++P  V  L  L  L L  NSF
Sbjct:   664 SLSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVGKLSSLFMLRLQSNSF 723

Query:   683 IGKIPETIGNMRSIESLDLSGNQISGKIPQ 712
              G+IP+ + N+ ++  LDLSGN+ISG IP+
Sbjct:   724 TGQIPDDLCNVPNLRILDLSGNKISGPIPK 753

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 221/774 (28%), Positives = 357/774 (46%)

Query:     3 CLESERVALIKLKQDFK--DPSNH------LASWIGDVDCCEWGGVVCNNITGHVLELNL 54
             C   +R AL++ K +F   + SN       L+SW   +DCC W GV C+ I+  V+ LNL
Sbjct:    30 CRHDQRNALLEFKHEFPRVNESNQIPYDVSLSSWNKSIDCCSWEGVTCDAISSEVISLNL 89

Query:    55 ERSELGGKINP--AXXXXXXXXXXXXSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWI 112
                 L   + P               S     G  IP  +G++  L  L+LS     G +
Sbjct:    90 SHVPLNNSLKPNSGLFKLQHLHNLTLSNCSLYG-DIPSSLGNLFRLTLLDLSYNYLVGQV 148

Query:   113 PHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLP 172
             P  +GNLS L  LDL  +  +L  +  + +   + LE+L  S      + +  +  ++L 
Sbjct:   149 PPSIGNLSRLTILDLWDN--KLVGQLPASIGNLTQLEYLIFSHNKF--SGNIPVTFSNLT 204

Query:   173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNI 232
              L V+ L++       PL  + F +L+  ++  N F  T +P  +F +  L + +L  N+
Sbjct:   205 KLLVVNLYNNSFESMLPLDMSGFQNLDYFNVGENSFSGT-LPKSLFTIPSLRWANLEGNM 263

Query:   233 FRGPIPDGFKNL----TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI 288
             F+GPI   F+N+    T L+YL LS N+F+  I D  S + +L  L L +N L G+  + 
Sbjct:   264 FKGPIE--FRNMYSPSTRLQYLFLSQNKFDGPIPDTLSQYLNLIELDLSFNNLTGSFPTF 321

Query:   289 GLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKN 348
                 L  I TL+   N  G  +   ++  +  ++  L+ L     + +G +   +  + N
Sbjct:   322 ----LFTIPTLE-RVNLEGNHLKGPVEFGNMSSSSSLKFLNFAQNEFNGSIPESVSQYLN 376

Query:   349 LHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSV 408
             L  L LS N+  G +P +  +L+ L Y  L +NN+ G +       LT +A    + NS 
Sbjct:   377 LEELHLSFNNFIGTIPRSISKLAKLEYFCLEDNNMVGEVPS-WLWRLTMVAL---SNNSF 432

Query:   409 N-FKINSKWVPPFQLLALRLRSCHL-GPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWN 466
             N F  +S+ +   Q+  L L S    GP FP W+   + L  L +S+ R +  IP     
Sbjct:   433 NSFGESSEGLDETQVQWLDLSSNSFQGP-FPHWICKLRSLEILIMSDNRFNGSIPPCL-- 489

Query:   467 SIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPVPFE 526
             S +  ++ D          L L NN  +G +P                    G++P    
Sbjct:   490 SSFMVSLTD----------LILRNNSLSGPLPDIFVNATKLLSLDVSRNKLDGVLPKSLI 539

Query:   527 NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIF--PIQICHLSSLQILD 584
             +C  +  L++  N+     P+W+G   S L +L LRSN+ +G    P       SL+++D
Sbjct:   540 HCKAMQLLNVRSNKIKDKFPSWLGSLPS-LHVLILRSNEFYGTLYQPHASIGFQSLRVID 598

Query:   585 VAYNRLSGSVPKC-INNFTAMATI----GSHHQVKAIYHASFEND--YIVEEISLVMKGF 637
             V++N L G++P    +++  M+ +    G     +A Y     N   + V+ + +V KG 
Sbjct:   599 VSHNDLIGTLPSFYFSSWREMSRLTGEDGDFRLSEAPYMGKVLNATAFFVDSMEIVNKGV 658

Query:   638 MVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIE 697
               E+  I    + I+ S N FSG IP  +  LK L+ LNLS N+F G IP+++ N+  +E
Sbjct:   659 ETEFKRINEENKVINFSGNRFSGNIPESIGLLKELRHLNLSSNAFTGNIPQSLANLMKLE 718

Query:   698 SLDLSGNQISGKIPQXXXXXXXXXXXXXXXXKLVGKIPSSTQLQSFGASSITGN 751
             +LDLS NQ+SG+IPQ                 L G +P STQ Q    S+   N
Sbjct:   719 ALDLSLNQLSGQIPQGLGSLSFMSTMNFSYNFLEGPVPKSTQFQGQNCSAFMEN 772

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 249/841 (29%), Positives = 368/841 (43%)

Query:     3 CLESERVALIKLKQDFKD-------PSN-HLASWIGDVDCCEWGGVVCNNITGHVLELNL 54
             C   +R AL++ K +FK        PS     SW    DCC W G+ C+  TG V+E++L
Sbjct:    30 CHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSWENGSDCCHWDGITCDAKTGEVIEIDL 89

Query:    55 ERSELGGKINPAXXXXXXX-----XXXXXSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFA 109
               S L G  +                   S N   G QI   IG++ +L  L+LSG  F+
Sbjct:    90 MCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYNHLSG-QISSSIGNLSHLTTLDLSGNNFS 148

Query:   110 GWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVIN 169
             GWIP  LGNL +L  L L  + +   +   S L   S L  LD S  + +   +      
Sbjct:   149 GWIPSSLGNLFHLTSLHLYDNNFGGEIP--SSLGNLSYLTFLDLSTNNFV--GEIPSSFG 204

Query:   170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLS 229
             SL  L +L+L + KL    PL   N + L+ + LS N F  T +P  +  LS L     S
Sbjct:   205 SLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGT-LPPNITSLSILESFSAS 263

Query:   230 SNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFD---DLEYLSLGYNRLQGTIS 286
              N F G IP     + S+  + L  NQ + T+   F N     +L  L LG N L+G I 
Sbjct:   264 GNNFVGTIPSSLFTIPSITLIFLDNNQLSGTLE--FGNISSPSNLLVLQLGGNNLRGPIP 321

Query:   287 SIGLENLTFIKTLDLS-FNELGQDISEILDIISACAAFELESLFLRGCKISG--QLTNQL 343
             +  +  L  ++TLDLS FN  GQ    I   +       L +L+L     +    L   L
Sbjct:   322 T-SISRLVNLRTLDLSHFNIQGQVDFNIFSHLKL-----LGNLYLSHSNTTTTIDLNAVL 375

Query:   344 GLFKNLHTLALSDNSV-----SGPLPPASGELSSLTY--------------------LDL 378
               FK L +L LS N V     S    P  G + SL                      LD+
Sbjct:   376 SCFKMLISLDLSGNHVLVTNKSSVSDPPLGLIGSLNLSGCGITEFPDILRTQRQMRTLDI 435

Query:   379 SNNNLNGMISEIHFGNLTELAFFY-ANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFP 437
             SNN + G +       L +L + + +N N + F+ ++K         L  ++    P   
Sbjct:   436 SNNKIKGQVPS---WLLLQLEYMHISNNNFIGFERSTK---------LE-KTVVPKPSMK 482

Query:   438 SWLHSQKHLS-KLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPD-LRVLNLGNNKFTG 495
              +  S  + S K+      +  +I     N+ +   IP C   +   L  LNL  N+ +G
Sbjct:   483 HFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSG 542

Query:   496 SIPISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555
             S+P ++                 G +P    + S L  L++  N      P W+     +
Sbjct:   543 SLPKTI--IKSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSS-LKK 599

Query:   556 LRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK-CINNFTAMATIGSHH-QV 613
             L++L LRSN  HG   I       L+I+D++ N  +G++P  C   +T M ++  +  + 
Sbjct:   600 LQVLVLRSNAFHG--RIHKTRFPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRF 657

Query:   614 KAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQ 673
                Y  S    Y  + + L+ KG  +E   IL +  ++D S N F GEIP  +  LK L 
Sbjct:   658 NEKYMGS---GYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELH 714

Query:   674 SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQXXXXXXXXXXXXXXXXKLVGK 733
              LNLS N F G IP ++GN+R +ESLD+S N++SG+IPQ                +LVG+
Sbjct:   715 ILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQ 774

Query:   734 IPSSTQLQSFGASSITGN-DLCGAPLSNCTEKNVLALCLSAGDGGT---STVISWMALGR 789
             +P  TQ ++  ASS   N  LCG PL  C    V+     +G+  T     V+SW+A   
Sbjct:   775 VPGGTQFRTQSASSFEENLGLCGRPLEEC---RVVHEPTPSGESETLESEQVLSWIAAAI 831

Query:   790 G 790
             G
Sbjct:   832 G 832

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.5e-63, P = 1.5e-63
 Identities = 242/801 (30%), Positives = 345/801 (43%)

Query:     5 ESERVALIKLKQDFK-DPSNHLASW--IGDVDCCEWGGVVCNNITGHVLELNLERSELGG 61
             E E  AL   K     DP   L+ W  IG +  C W G+ C++ TGHV+ ++L   +L G
Sbjct:    28 EPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDS-TGHVVSVSLLEKQLEG 86

Query:    62 KINPAXXXXXXXXXXXXSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSN 121
              ++PA            + N F G +IP  IG +  L  L L    F+G IP  +  L N
Sbjct:    87 VLSPAIANLTYLQVLDLTSNSFTG-KIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKN 145

Query:   122 LMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPS----LKVL 177
             + +LDL  +           L+G    E   TS + LI   D+  +   +P     L  L
Sbjct:   146 IFYLDLRNNL----------LSGDVPEEICKTSSLVLI-GFDYNNLTGKIPECLGDLVHL 194

Query:   178 KLFSCKLHHFA---PLASANFSSLNALDLSGN-LFGKTSIPSWVFGLSDLVFLDLSSNIF 233
             ++F    +H     P++    ++L  LDLSGN L GK  IP     L +L  L L+ N+ 
Sbjct:   195 QMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGK--IPRDFGNLLNLQSLVLTENLL 252

Query:   234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL 293
              G IP    N +SL  L+L  NQ    I     N   L+ L +  N+L  +I S  L  L
Sbjct:   253 EGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPS-SLFRL 311

Query:   294 TFIKTLDLSFNELGQDISEILDIISACAAFELESL-----F------LRGC--------K 334
             T +  L LS N L   ISE +  + +     L S      F      LR           
Sbjct:   312 TQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNN 371

Query:   335 ISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGN 394
             ISG+L   LGL  NL  L+  DN ++GP+P +    + L  LDLS+N + G I    FG 
Sbjct:   372 ISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPR-GFGR 430

Query:   395 LTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNT 454
             +  L F     N    +I         L  L +   +L       +   + L  L +S  
Sbjct:   431 MN-LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYN 489

Query:   455 RISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGXXXXXXXXXXXX 514
              ++  IPR   N               DL +L L +N FTG IP  M             
Sbjct:   490 SLTGPIPREIGNL-------------KDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYS 536

Query:   515 XXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQI 574
                 G IP    +   L  LD+  N+F G IP  +  +   L  L+L+ NK +G  P  +
Sbjct:   537 NDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPA-LFSKLESLTYLSLQGNKFNGSIPASL 595

Query:   575 CHLSSLQILDVAYNRLSGSVP----KCINNFTAMATIGSHHQVKAIYHASFENDYIVEEI 630
               LS L   D++ N L+G++P      + N        S++ +            +V+EI
Sbjct:   596 KSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNF-SNNLLTGTIPKELGKLEMVQEI 654

Query:   631 SL---VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKI 686
              L   +  G +         V ++D S NN SG IP EV   +  + SLNLS NSF G+I
Sbjct:   655 DLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEI 714

Query:   687 PETIGNMRSIESLDLSGNQISGKIPQXXXXXXXXXXXXXXXXKLVGKIPSSTQLQSFGAS 746
             P++ GNM  + SLDLS N ++G+IP+                 L G +P S   ++  AS
Sbjct:   715 PQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINAS 774

Query:   747 SITGN-DLCGA--PLSNCTEK 764
              + GN DLCG+  PL  CT K
Sbjct:   775 DLMGNTDLCGSKKPLKPCTIK 795

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 210/695 (30%), Positives = 318/695 (45%)

Query:    82 DFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRV-EDIS 140
             +F G  +P  I +  NL+ LNLS   FAG  P  L N + L +LDLS + +   + +DI+
Sbjct:    74 NFTGT-VPTTICNFPNLKSLNLSFNYFAGEFPTVLYNCTKLQYLDLSQNLFNGSLPDDIN 132

Query:   141 WLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNA 200
              LA P L ++LD +      A D    I  +  LKVL L+  +     P    + S L  
Sbjct:   133 RLA-PKL-KYLDLAANSF--AGDIPKNIGRISKLKVLNLYMSEYDGTFPSEIGDLSELEE 188

Query:   201 LDLSGN-LFGKTSIPSWVFG-LSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQF 257
             L L+ N  F    +P+  FG L  L ++ L      G I    F+N+T L+++DLS N  
Sbjct:   189 LQLALNDKFTPVKLPT-EFGKLKKLKYMWLEEMNLIGEISAVVFENMTDLKHVDLSVNNL 247

Query:   258 NSTISDCFSNFDDLEYLSLGYNRLQGTI-SSIGLENLTFIKTLDLSFNELGQDISEILDI 316
                I D      +L  L L  N L G I  SI  +NL     LDLS N L   I E +  
Sbjct:   248 TGRIPDVLFGLKNLTELYLFANDLTGEIPKSISAKNLVH---LDLSANNLNGSIPESIGN 304

Query:   317 ISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYL 376
             ++      LE L+L   +++G++   +G    L  L L  N ++G +P   G +S L   
Sbjct:   305 LT-----NLELLYLFVNELTGEIPRAIGKLPELKELKLFTNKLTGEIPAEIGFISKLERF 359

Query:   377 DLSNNNLNGMISE--IHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGP 434
             ++S N L G + E   H G L  +   Y+N  +     +         + L+        
Sbjct:   360 EVSENQLTGKLPENLCHGGKLQSV-IVYSNNLTGEIPESLGDCETLSSVLLQNNGFSGSV 418

Query:   435 HFPSWLHSQKHLS-KLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKF 493
                +   S  + + K+      +  +I      + +  +IP C  N   L VLNLG N  
Sbjct:   419 TISNNTRSNNNFTGKIPSFICELHSLILLDLSTNKFNGSIPRCIANLSTLEVLNLGKNHL 478

Query:   494 TGSIPISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERF 553
             +GSIP ++                 G +P      S L  L++  N+     P W+ +  
Sbjct:   479 SGSIPENISTSVKSIDIGHNQLA--GKLPRSLVRISSLEVLNVESNKINDTFPFWL-DSM 535

Query:   554 SRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP-KCINNFTAMATIGSHHQ 612
              +L++L LRSN  HG   I     S L+I+D++ N  +G++P     N+TAM ++G   +
Sbjct:   536 QQLQVLVLRSNAFHG--SINQNGFSKLRIIDISGNHFNGTLPLDFFVNWTAMFSLG---K 590

Query:   613 VKAIYHAS--FENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLK 670
             ++  Y  +     +Y  + I +++KG  +E   ILN   +ID S N F GEIP  V  LK
Sbjct:   591 IEDQYMGTNYMRTNYYSDSIVVMIKGIALEMVRILNTFTTIDFSGNKFEGEIPRSVGLLK 650

Query:   671 GLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQXXXXXXXXXXXXXXXXKL 730
              L  LNLS+N F G IP ++GN+  +ESLD+S N++SG+IP                 + 
Sbjct:   651 ELHVLNLSNNGFTGHIPSSMGNLIELESLDVSQNKLSGEIPPELGKLSYLAYMNFSQNQF 710

Query:   731 VGKIPSSTQLQSFGASSITGND-LCGAPLSN-CTE 763
             VG +P  TQ Q+   SS   N  L G  L   C +
Sbjct:   711 VGLVPGGTQFQTQPCSSFADNPRLFGLSLERVCVD 745

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 7.0e-59, Sum P(2) = 7.0e-59
 Identities = 225/753 (29%), Positives = 334/753 (44%)

Query:    48 HVLELNLERSELGGKINPAXXXXXXXXXXXXSGNDFQGIQIPEYIGSMDNLRYLNLSGAG 107
             H+  L+L  ++  G I  +            S N F G QIP  IG++ +L  L LS   
Sbjct:   150 HLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSG-QIPSSIGNLSHLTSLELSSNQ 208

Query:   108 FAGWIPHQLGNLSNLMHLDL-SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLL 166
             F+G IP  +GNLSNL  L L S  ++      I  LA  + L     + V  I +S    
Sbjct:   209 FSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSS---- 264

Query:   167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL 226
                +L  L VL++ S KL    P++  N + L+AL LS N F  T IP+ +  LS+L+  
Sbjct:   265 -FGNLNQLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQFTGT-IPNNISLLSNLMDF 322

Query:   227 DLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFD---DLEYLSLGYNRLQG 283
             + S+N F G +P    N+  L  LDLS NQ N T+   F N     +L+YL +G N   G
Sbjct:   323 EASNNAFTGTLPSSLFNIPPLIRLDLSDNQLNGTLH--FGNISSPSNLQYLIIGSNNFIG 380

Query:   284 TISSIGLENLTFIKTLDLSFNELGQDISEI-LDIISACAAFE-LESLFLRGCKISGQLTN 341
             TI    L     +   DLS   L      +   I S   + + L   +L    I   L +
Sbjct:   381 TIPR-SLSRFVNLTLFDLS--HLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTID--LND 435

Query:   342 QLGLFKNLHTLALSDNSVSGPLPPA-SGE--LSSLTYLDLSNNNLNGMISEIHFGNLTEL 398
              L  FK L +L +S N VS     + S +    S+  L LS   +     EI      EL
Sbjct:   436 ILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQSLYLSGCGITDF-PEI-LRTQHEL 493

Query:   399 AFFYANGNSVNFKINS-KWVPPFQLLALRL-RSCHLGPHFPSWLHSQKHLSK-----LDI 451
              F   + N +  ++    W  P  L  L L  +  +     S  H    + K     L  
Sbjct:   494 GFLDVSNNKIKGQVPGWLWTLP-NLFYLNLSNNTFISFESSSKKHGLSSVRKPSMIHLFA 552

Query:   452 SNTRISDIIPRWFW-----NSI------YQDTIPDCWMNWPD-LRVLNLGNNKFTGSIPI 499
             SN   +  IP +       N++      Y  +IP C       L VLNL  N  +G +P 
Sbjct:   553 SNNNFTGKIPSFICGLRSLNTLDLSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPK 612

Query:   500 SMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRIL 559
              +                 G +P      S L  L++  N      P W+    S+L++L
Sbjct:   613 HI--FESLRSLDVGHNLLVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSS-LSKLQVL 669

Query:   560 NLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP-KCINNFTAMATIGSHH-QVKAIY 617
              LRSN  HG  PI       L+I+D+++N  +G++P +    ++AM+++G +  Q    Y
Sbjct:   670 VLRSNAFHG--PIHEATFPELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKY 727

Query:   618 HASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNL 677
               S    Y  + + L+ KG  +E   IL +  ++D S N F GEIP  +  LK L  LNL
Sbjct:   728 MGS--GLYYQDSMVLMNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNL 785

Query:   678 SHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQXXXXXXXXXXXXXXXXKLVGKIPSS 737
             S+N+F G IP ++GN+ ++ESLD+S N+++G+IPQ                +L G +P  
Sbjct:   786 SNNAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGG 845

Query:   738 TQLQSFGASSITGN-DLCGAPLSN-CTEKNVLA 768
             TQ +    S+   N  L G  L   C +K+  A
Sbjct:   846 TQFRRQNCSAFENNLGLFGPSLDEVCRDKHTPA 878

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 2.3e-54, P = 2.3e-54
 Identities = 224/807 (27%), Positives = 360/807 (44%)

Query:     3 CLESERVALIKLKQDFK--DP---SNH--LASWIGDVDCCEWGGVVCNNITGHVLELNLE 55
             C   +R AL++LK++FK   P     H    SW  + DCC W G+ CN+ +G VLEL+L 
Sbjct:    39 CRLEQRDALLELKKEFKIKKPCFDGLHPTTESWANNSDCCYWDGITCNDKSGEVLELDLS 98

Query:    56 RSELGGKINPAXXXXXXXXXXXXSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQ 115
             RS L  + +              + + F  + +  ++ ++D L Y N     F+G IP  
Sbjct:    99 RSCLQSRFH-------------SNSSLFTVLNL-RFLTTLD-LSY-NY----FSGQIPSC 138

Query:   116 LGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLK 175
             + N S+L  LDLS +Y+   +   S +   S L  LD S  + +    +   +N L +L 
Sbjct:   139 IENFSHLTTLDLSKNYFSGGIP--SSIGNLSQLTFLDLSGNEFVGEMPFFGNMNQLTNLY 196

Query:   176 VLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRG 235
             V    S  L    PL+  N   L+ L LS N F  T +PS +  LS+L + +   N F G
Sbjct:   197 V---DSNDLTGIFPLSLLNLKHLSDLSLSRNQFTGT-LPSNMSSLSNLEYFEAWGNAFTG 252

Query:   236 PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD---LEYLSLGYNRLQGTISSIGLEN 292
              +P     + SL  ++L  NQ N T+   F N      L  L +  N   G I    +  
Sbjct:   253 TLPSSLFTIASLTSINLRNNQLNGTLE--FGNISSPSTLTVLDISNNNFIGPIPK-SISK 309

Query:   293 LTFIKTLDLS-FNELGQ-DIS--------EILDI--ISACAAFELESLF------LRGCK 334
                ++ LDLS  N  G  D S        ++L++  ++     +L +LF      +    
Sbjct:   310 FINLQDLDLSHLNTQGPVDFSIFTNLKSLQLLNLSHLNTTTTIDLNALFSSHLNSIYSMD 369

Query:   335 ISGQ---LTNQLGLFKNLHTLALSDNSVSG----PLPPASGELSSLTYLDLSNNNLNGMI 387
             +SG     T ++ +  +  T  +S   +SG      P        +T LD+SNN + G +
Sbjct:   370 LSGNHVSATTKISVADHHPTQLISQLYLSGCGITEFPELLRSQHKMTNLDISNNKIKGQV 429

Query:   388 SEIHFGNLTELAFFYANGNS-VNFKINSKW----VPPFQLLALRLRSCHLGPHFPSWLHS 442
                    L +L F   + N    F+ +++     +    +  L   + +     PS++ +
Sbjct:   430 PG-WLWTLPKLIFVDLSNNIFTGFERSTEHGLSLITKPSMQYLVGSNNNFTGKIPSFICA 488

Query:   443 QKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPD-LRVLNLGNNKFTGSIPISM 501
              + L  LD+S+  ++              +IP C  N    L  LNL  N+  G +P S+
Sbjct:   489 LRSLITLDLSDNNLNG-------------SIPPCMGNLKSTLSFLNLRQNRLGGGLPRSI 535

Query:   502 GXXXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNL 561
                              G +P  F   S L  L++  N      P W+     +L++L L
Sbjct:   536 --FKSLRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDTFPFWLSS-LKKLQVLVL 592

Query:   562 RSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP-KCINNFTAMATI-GSHHQVKAIYHA 619
             RSN  HG  PI      +L+I+++++N+ SG++P     N+ AM+++  +  + +  Y  
Sbjct:   593 RSNAFHG--PIHHASFHTLRIINLSHNQFSGTLPANYFVNWNAMSSLMATEDRSQEKYMG 650

Query:   620 -SFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLS 678
              SF   Y  + + L+ KG  +E   IL +  ++D S N   GEIP  +  LK L  LNLS
Sbjct:   651 DSFR--YYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLLKELHVLNLS 708

Query:   679 HNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQXXXXXXXXXXXXXXXXKLVGKIPSST 738
              N+F G IP ++GN+R +ESLD+S N++SG+IPQ                +L G +P  T
Sbjct:   709 SNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNFSHNQLGGLVPGGT 768

Query:   739 QLQSFGASSITGND-LCGAPLSN-CTE 763
             Q +    SS   N  L G+ L   C +
Sbjct:   769 QFRRQNCSSFKDNPGLYGSSLEEVCLD 795

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 3.1e-54, P = 3.1e-54
 Identities = 192/676 (28%), Positives = 301/676 (44%)

Query:    98 LRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGP-SLLEHLDTSDV 156
             LR+L+L+     G IP  LGNLS   HL L   Y+   V +I    G  + L HL  ++ 
Sbjct:   112 LRHLDLTNCNLYGEIPSSLGNLS---HLTLVNLYFNKFVGEIPASIGNLNQLRHLILANN 168

Query:   157 DLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDL-SGNLFGKTSIPS 215
              L    +    + +L  L  L+LFS +L    P +  +   L  L L S NL G+  IPS
Sbjct:   169 VL--TGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGE--IPS 224

Query:   216 WVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLS 275
              +  LS+LV L L+ N   G +P    NL  LR +    N  +  I   F+N   L    
Sbjct:   225 SLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFV 284

Query:   276 LGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKI 335
             L  N    T     +     ++  D+S+N       + L +I +     LES++L+  + 
Sbjct:   285 LSSNNFTSTFP-FDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPS-----LESIYLQENQF 338

Query:   336 SG--QLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFG 393
             +G  +  N     K L  L L  N + GP+P +   L +L  LD+S+NN  G I      
Sbjct:   339 TGPIEFANTSSSTK-LQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPT-IS 396

Query:   394 NLTELAFFYANGNSVNFKINS-KWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDIS 452
              L  L     + N++  ++ +  W    +L  + L S +    F +    +  + +LD++
Sbjct:   397 KLVNLLHLDLSKNNLEGEVPACLW----RLNTMVL-SHNSFSSFENTSQEEALIEELDLN 451

Query:   453 NTRISDIIPRWFW-----------NSIYQDTIPDCWMNWP-DLRVLNLGNNKFTGSIPIS 500
             +      IP               N+++  +IP C  N+   ++ LNLG+N F+G++P  
Sbjct:   452 SNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDI 511

Query:   501 MGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN 560
                               G  P    NC  L  +++  N+     P+W+ E    L +LN
Sbjct:   512 FSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLN 570

Query:   561 LRSNKLHGIFPIQICHLS----SLQILDVAYNRLSGSVPKC-INNFTAMATIGSHHQVKA 615
             LRSNK +G  P+   H S    SL+I+D+++N  SG++P    +N+  M T+        
Sbjct:   571 LRSNKFYG--PLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYM 628

Query:   616 IYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSL 675
                  + + Y   E+ +V KG  + +  I    R+ID S N  +G IP  +  LK L+ L
Sbjct:   629 TEFWRYADSYY-HEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVL 687

Query:   676 NLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQXXXXXXXXXXXXXXXXKLVGKIP 735
             NLS N+F   IP  + N+  +E+LD+S N++SG+IPQ                 L G +P
Sbjct:   688 NLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVP 747

Query:   736 SSTQLQSFGASSITGN 751
               TQ Q    SS   N
Sbjct:   748 RGTQFQRQKCSSFLDN 763

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 206/717 (28%), Positives = 323/717 (45%)

Query:    97 NLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDV 156
             +LR+L LS     G IP  +GNLS+L +LDLS  + +L  E    +   + LE++D   V
Sbjct:   113 HLRHLELSHCNLQGEIPSSIGNLSHLTYLDLS--FNQLVGEFPVSIGNLNQLEYIDLW-V 169

Query:   157 DLIKASDWLLVINSLPSLKVLKLFSCKLHHFA--PLASANFSSLNALDLSGNLFGKTSIP 214
             + +  +    +  S  +L  L     + + F    +  +N +SL+ +DLS N F  T I 
Sbjct:   170 NALGGN----IPTSFANLTKLSELHLRQNQFTGGDIVLSNLTSLSIVDLSSNYFNST-IS 224

Query:   215 SWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD---L 271
             + +  L +L    +S N F GP P     + SL  + LS NQF   I+  F N      L
Sbjct:   225 ADLSQLHNLERFWVSENSFFGPFPSFLLMIPSLVDICLSENQFEGPIN--FGNTTSSSKL 282

Query:   272 EYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL-GQDISEILDIISACAAFELESLFL 330
               L + YN L G I    +  L  ++ L+LS N   GQ  S I  +++      L+ L+L
Sbjct:   283 TELDVSYNNLDGLIPK-SISTLVSLEHLELSHNNFRGQVPSSISKLVN------LDGLYL 335

Query:   331 RGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEI 390
                   GQ+ + +    NL  L LS N   G +P +  +L +L+ LDLS N   G + + 
Sbjct:   336 SHNNFGGQVPSSIFKLVNLEHLDLSHNDFGGRVPSSISKLVNLSSLDLSYNKFEGHVPQC 395

Query:   391 HF--GNLTELAFFYANGNSVN--FKINSKWVP-PFQLLALRLRSCHLGPHFPSWLHSQKH 445
              +    L  +   Y + NS     ++  + +   + L +  L+    GP  P W+ + + 
Sbjct:   396 IWRSSKLDSVDLSYNSFNSFGRILELGDESLERDWDLSSNSLQ----GP-IPQWICNFRF 450

Query:   446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGXXX 505
              S LD SN  ++              +IP C  N  D  +LNL NN  +G +P       
Sbjct:   451 FSFLDFSNNHLNG-------------SIPQCLKNSTDFYMLNLRNNSLSGFMPDFCMDGS 497

Query:   506 XXXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNK 565
                          G +P  F NC  +  L++  N+     P W+G     L +L LRSN 
Sbjct:   498 MLGSLDVSLNNLVGKLPESFINCEWMEYLNVRGNKIKDTFPVWLGS-LQYLTVLVLRSNT 556

Query:   566 LHGIFPIQICHLS--SLQILDVAYNRLSGSVPK-CINNFTAMATIGSHHQVKAIYHASFE 622
              +G       +L   S++I+D++ N   GS+P+    N+T M+++     +   Y  +  
Sbjct:   557 FYGPVYKASAYLGFPSMRIMDISNNNFVGSLPQDYFANWTEMSSVWQRPMLTLDYKRNIA 616

Query:   623 ---NDYIVEE-----ISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQS 674
                ++Y+ ++     I LV KG   ++  I    + ID S N FSG IP  +  L  L  
Sbjct:   617 IPGSNYMGDDNHQDSIDLVYKGVDTDFEQIFGGFKVIDFSGNRFSGHIPRSIGLLSELLH 676

Query:   675 LNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQXXXXXXXXXXXXXXXXKLVGKI 734
             LNLS N+F G IP ++ ++  +E+LDLS N +SG+IP+                 L G +
Sbjct:   677 LNLSGNAFTGNIPPSLASITKLETLDLSRNNLSGEIPRGLGKLSFLSNINFSHNHLEGLV 736

Query:   735 PSSTQLQSFGASSITGND-LCGAPLSNCTEKNV-LALCLSAGDG---GTSTVISWMA 786
             P STQ  S   SS  GN  L G     C E +V +   L   +       TV++W+A
Sbjct:   737 PQSTQFGSQNCSSFMGNPRLYGLD-QICGETHVPIPTSLHPEEPLLEPEETVLNWIA 792

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 4.8e-54, P = 4.8e-54
 Identities = 234/794 (29%), Positives = 348/794 (43%)

Query:    36 EWGGVVCNNITGHVLELNLERSELGG--KINPAXXXXXXXXXXXXSGNDFQGIQIPEYIG 93
             ++ GV C+N TG V  L L R  L G  K N +            + N+F    +P    
Sbjct:    65 DFNGVWCDNSTGAVTVLQL-RDCLSGTLKSNSSLFGFHQLRYLALNRNNFTSASLPSEFC 123

Query:    94 SMDNLRYLNLSGAGFAGWIPHQ--LG------NLSNLMHLDLSGSYYELRVEDISWLAGP 145
             +++ L+ L+L   GF   + H   +G      NL  L  LDLS +++   +   + L   
Sbjct:   124 NLNKLKLLSLFSNGFID-LSHNDLMGSFPLVRNLGKLAVLDLSDNHFSGTLNPNNSLFEL 182

Query:   146 SLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKL-FSCKLHHFAPLASANFSSLNALDLS 204
               L +L+ +  ++  +S       +L  L+VL L F+       P  S N + +  L L 
Sbjct:   183 HSLRYLNLAFNNI--SSSLPSKFGNLNKLEVLSLSFNGFSGQCFPTIS-NLTRITQLYLH 239

Query:   205 GN-LFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTIS- 262
              N L G  S P  V  L+ L FL LS N+F G IP       SL  LDL  N  + +I  
Sbjct:   240 NNELTG--SFPL-VQNLTKLSFLGLSDNLFSGTIPSYLFTFPSLSTLDLRENDLSGSIEV 296

Query:   263 DCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAA 322
                S    LE + LG+N L+G I    +  L  +K LDLSF      I   L+++S   +
Sbjct:   297 PNSSTSSKLEIMYLGFNHLEGKILE-PISKLINLKRLDLSFLNTSYPID--LNLLSPLKS 353

Query:   323 FELESLFLRGCKIS-GQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNN 381
               L  L   G  +S   L++   +  ++ ++ LS   +    P     L +L ++D+++N
Sbjct:   354 --LSYLDFSGNSLSPASLSSSSYIPLSMESIVLSLCGIR-EFPNILKHLQNLIHIDITSN 410

Query:   382 NLNGMISEIHFGNLTELAFFYANGNSVN-FKINSKWVPPFQLLALRLRSCHL-G--PHFP 437
              + G I E     L +L+F   + NS N F+ +++      +  L L + +  G  P  P
Sbjct:   411 QIKGKIPE-WLWTLPQLSFVDISNNSFNGFQGSAEVFVNLSVRILMLDANNFEGALPTLP 469

Query:   438 SWL--HSQKHLS-----KLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN 490
               +   S  H S      L I N R S  +    +N+ +   IP C  N+     +NL  
Sbjct:   470 LSIIGFSAIHNSFTGEIPLSICN-RTSLTMVDLSYNN-FTGPIPQCLSNF---MFVNLRK 524

Query:   491 NKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMG 550
             N   GSIP +                  G +P    NCS L  L +  N      P W+ 
Sbjct:   525 NDLEGSIPDTFYTDSSLKSLDVGYNRLTGKLPRSLLNCSSLRFLSVDNNRVKDTFPFWL- 583

Query:   551 ERFSRLRILNLRSNKLHGIFPIQICH-----LSSLQILDVAYNRLSGSVPKCIN-NFTAM 604
             +    LR+L LRSNK +G  PI   H        L+I ++A N  +GS+P     N+ A 
Sbjct:   584 KALPNLRVLTLRSNKFYG--PISPPHQGPLGFPELRIFEIADNMFTGSLPPSFFVNWKAS 641

Query:   605 A-TIGSHHQVKAIYH----ASFENDYI-VEEISLVMKGFMVEYNSILNLVRSIDISMNNF 658
             A T      +  +Y     A+    Y   + I L  KG  +E   +L    +ID S N  
Sbjct:   642 ALTKNEDGGLYMVYEYDKAANSPVRYTYTDTIDLQYKGLHMEQERVLTSYAAIDFSGNRL 701

Query:   659 SGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQXXXXXX 718
              G+IP  +  LK L +LNLS+N+F G IP +  N+ ++ESLD+SGNQ+SG IP       
Sbjct:   702 QGQIPESIGLLKALIALNLSNNAFTGHIPLSFANLMNLESLDMSGNQLSGTIPNGLGSLS 761

Query:   719 XXXXXXXXXXKLVGKIPSSTQLQSFGASSITGN-DLCGAPLSN-CTEKNVLALCLSAGDG 776
                       KL G+IP  TQ+     SS  GN  LCG PL   C + +V  +     D 
Sbjct:   762 FLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGLCGLPLQETCFDSSVPPIQPKQEDE 821

Query:   777 GTSTVISWMALGRG 790
                 VI+W A+  G
Sbjct:   822 EKGEVINWKAVAIG 835

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	790
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-61
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-54
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-37
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-33
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  224 bits (572), Expect = 1e-61
 Identities = 195/616 (31%), Positives = 279/616 (45%), Gaps = 73/616 (11%)

Query: 2   GCLESERVALI-KLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELG 60
             L +E + L+   K    DP  +L++W    D C W G+ CNN +  V+ ++L    + 
Sbjct: 24  SMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSS-RVVSIDLSGKNIS 82

Query: 61  GKINPALVDLKHLNLLDLSGNDFQGIQIPEYI-GSMDNLRYLNLSGAGFAGWIPHQLGNL 119
           GKI+ A+  L ++  ++LS N   G  IP+ I  +  +LRYLNLS   F G IP   G++
Sbjct: 83  GKISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI 139

Query: 120 SNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKL 179
            NL  LDLS +           L+G    +                  I S  SLKVL L
Sbjct: 140 PNLETLDLSNNM----------LSGEIPND------------------IGSFSSLKVLDL 171

Query: 180 FSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPD 239
               L    P +  N +SL  L L+ N      IP  +  +  L ++ L  N   G IP 
Sbjct: 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQL-VGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230

Query: 240 GFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI--SSIGLENLTFIK 297
               LTSL +LDL YN     I     N  +L+YL L  N+L G I  S   L+ L    
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI--- 287

Query: 298 TLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDN 357
           +LDLS N L  +I E++  +       LE L L     +G++   L     L  L L  N
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQ-----NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342

Query: 358 SVSGPLPPASGELSSLTYLDLSNNNLNGMISE--IHFGNLTELAFFYANGNSVNFKINSK 415
             SG +P   G+ ++LT LDLS NNL G I E     GNL +L  F    NS+  +I   
Sbjct: 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF---SNSLEGEIPKS 399

Query: 416 WVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPD 475
                 L  +RL+        PS       +  LDISN  +   I    W+      +P 
Sbjct: 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD------MPS 453

Query: 476 CWM----------NWPD------LRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG 519
             M            PD      L  L+L  N+F+G++P  +G+L+ L  L L  N+LSG
Sbjct: 454 LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513

Query: 520 IIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSS 579
            IP    +C +LV+LD+  N+  G IP    E    L  L+L  N+L G  P  + ++ S
Sbjct: 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSE-MPVLSQLDLSQNQLSGEIPKNLGNVES 572

Query: 580 LQILDVAYNRLSGSVP 595
           L  +++++N L GS+P
Sbjct: 573 LVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  201 bits (512), Expect = 8e-54
 Identities = 173/566 (30%), Positives = 269/566 (47%), Gaps = 75/566 (13%)

Query: 194 NFSSLNALDLSG-NLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLD 251
           N S + ++DLSG N+ GK  I S +F L  +  ++LS+N   GPIPD  F   +SLRYL+
Sbjct: 67  NSSRVVSIDLSGKNISGK--ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 252 LSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI-SSIGLENLTFIKTLDLSFNELGQDI 310
           LS N F  +I        +LE L L  N L G I + IG    + +K LDL  N L   I
Sbjct: 125 LSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGS--FSSLKVLDLGGNVLVGKI 180

Query: 311 SEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGEL 370
              L  +++     LE L L   ++ GQ+  +LG  K+L  + L  N++SG +P   G L
Sbjct: 181 PNSLTNLTS-----LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
           +SL +LDL  NNL G I     GNL  L + +   N ++  I                  
Sbjct: 236 TSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPI------------------ 276

Query: 431 HLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN 490
                 P  + S + L  LD+S+  +S               IP+  +   +L +L+L +
Sbjct: 277 ------PPSIFSLQKLISLDLSDNSLSG-------------EIPELVIQLQNLEILHLFS 317

Query: 491 NKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMG 550
           N FTG IP+++ +L  L+ L L SN+ SG IP      + L  LD+  N   G IP  + 
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377

Query: 551 ERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSH 610
                L  L L SN L G  P  +    SL+ + +  N  SG +P     FT +  +   
Sbjct: 378 SS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS---EFTKLPLV--- 430

Query: 611 HQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLK 670
                         Y ++  +  ++G +      +  ++ + ++ N F G +P +    K
Sbjct: 431 --------------YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSK 475

Query: 671 GLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKL 730
            L++L+LS N F G +P  +G++  +  L LS N++SG+IP  +SS   L  L+LS N+L
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 731 VGKIPSS-TQLQSFGASSITGNDLCG 755
            G+IP+S +++       ++ N L G
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSG 561

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  151 bits (382), Expect = 2e-37
 Identities = 147/513 (28%), Positives = 213/513 (41%), Gaps = 112/513 (21%)

Query: 233 FRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCF------SNFDDLEYLSLGYNRLQGTIS 286
           F+  I D  K L++          +NS+   C       +N   +  + L    + G IS
Sbjct: 37  FKSSINDPLKYLSN----------WNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKIS 86

Query: 287 SIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF 346
           S     L +I+T++LS N+L   I +  DI +  ++  L  L L     +G +    G  
Sbjct: 87  SAIFR-LPYIQTINLSNNQLSGPIPD--DIFTTSSS--LRYLNLSNNNFTGSIPR--GSI 139

Query: 347 KNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGN 406
            NL TL LS+N +SG +P   G  SSL  LDL  N L G I      NLT L F      
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEF------ 192

Query: 407 SVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWN 466
                             L L S  L    P  L   K L  + +    +S  IP     
Sbjct: 193 ------------------LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP----Y 230

Query: 467 SIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFE 526
            I   T          L  L+L  N  TG IP S+G L +L+ L L  N+LSG IP    
Sbjct: 231 EIGGLT---------SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281

Query: 527 NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVA 586
           +  +L++LD+ +N   G IP  + +    L IL+L SN   G  P+ +  L  LQ+L + 
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340

Query: 587 YNRLSGSVPKCI---NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNS 643
            N+ SG +PK +   NN T +                                       
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVL--------------------------------------- 361

Query: 644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSG 703
                   D+S NN +GEIP  + +   L  L L  NS  G+IP+++G  RS+  + L  
Sbjct: 362 --------DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 704 NQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPS 736
           N  SG++P   + L  +  L++S+N L G+I S
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  136 bits (345), Expect = 5e-33
 Identities = 119/406 (29%), Positives = 182/406 (44%), Gaps = 65/406 (16%)

Query: 333 CKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHF 392
           C   G   N       + ++ LS  ++SG +  A   L  +  ++LSNN L+G I +  F
Sbjct: 58  CLWQGITCNN---SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIF 114

Query: 393 GNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDIS 452
              + L +   + N+    I    +P                          +L  LD+S
Sbjct: 115 TTSSSLRYLNLSNNNFTGSIPRGSIP--------------------------NLETLDLS 148

Query: 453 NTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNL 512
           N  +S          I  D       ++  L+VL+LG N   G IP S+  LTSL  L L
Sbjct: 149 NNMLS--------GEIPNDI-----GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195

Query: 513 RSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPI 572
            SN+L G IP        L  + +G N   G IP  +G   + L  L+L  N L G  P 
Sbjct: 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPS 254

Query: 573 QICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEI-S 631
            + +L +LQ L +  N+LSG +P  I +   + ++               ++ +  EI  
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL------------DLSDNSLSGEIPE 302

Query: 632 LVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIG 691
           LV++   +E   IL+L        NNF+G+IP+ +T+L  LQ L L  N F G+IP+ +G
Sbjct: 303 LVIQLQNLE---ILHLFS------NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353

Query: 692 NMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS 737
              ++  LDLS N ++G+IP+ + S   L  L L  N L G+IP S
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  136 bits (344), Expect = 7e-33
 Identities = 111/403 (27%), Positives = 168/403 (41%), Gaps = 86/403 (21%)

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
           S +  +DLS  N++G IS   F  L  +     + N ++  I                  
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPI------------------ 109

Query: 431 HLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN 490
              P       S   L  L++SN   +  IPR                  P+L  L+L N
Sbjct: 110 ---PDDIFTTSSS--LRYLNLSNNNFTGSIPRGSI---------------PNLETLDLSN 149

Query: 491 NKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMG 550
           N  +G IP  +G+ +SL+ L+L  N L G IP    N + L  L +  N+ VG IP  +G
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209

Query: 551 ERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSH 610
            +   L+ + L  N L G  P +I  L+SL  LD+ YN L+G +P  + N   +      
Sbjct: 210 -QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ----- 263

Query: 611 HQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLK 670
                                     ++  Y              N  SG IP  + +L+
Sbjct: 264 --------------------------YLFLYQ-------------NKLSGPIPPSIFSLQ 284

Query: 671 GLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKL 730
            L SL+LS NS  G+IPE +  ++++E L L  N  +GKIP +++SL  L  L L  NK 
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 731 VGKIPSSTQLQ-SFGASSITGNDLCGA-PLSNCTEKNVLALCL 771
            G+IP +     +     ++ N+L G  P   C+  N+  L L
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.9 bits (210), Expect = 6e-17
 Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 3/101 (2%)

Query: 660 GEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSF 719
           G IP +++ L+ LQS+NLS NS  G IP ++G++ S+E LDLS N  +G IP+S+  L+ 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 720 LNHLNLSDNKLVGKIPSSTQLQSFGASSITGND---LCGAP 757
           L  LNL+ N L G++P++   +    +S    D   LCG P
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.9 bits (184), Expect = 8e-14
 Identities = 38/105 (36%), Positives = 65/105 (61%), Gaps = 5/105 (4%)

Query: 634 MKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNM 693
           ++GF+    S L  ++SI++S N+  G IP  + ++  L+ L+LS+NSF G IPE++G +
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 694 RSIESLDLSGNQISGKIPQSMSSLSFLNH---LNLSDNKLVGKIP 735
            S+  L+L+GN +SG++P ++     L H    N +DN  +  IP
Sbjct: 490 TSLRILNLNGNSLSGRVPAALGGR--LLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 7e-11
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 9/144 (6%)

Query: 458 DIIPRWFWNSIYQDT------IPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLN 511
               +WF + +  D       IP+       L+ +NL  N   G+IP S+G++TSL  L+
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 512 LRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNK-LHGIF 570
           L  N  +G IP      + L  L++  N   G +P  +G R       N   N  L GI 
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Query: 571 PIQIC--HLSSLQILDVAYNRLSG 592
            ++ C  HLS    + +A+     
Sbjct: 533 GLRACGPHLSVGAKIGIAFGVSVA 556

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 5e-10
 Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 25/110 (22%)

Query: 486 LNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNI 545
           L L N    G IP  +  L  L+S+NL  N + G IP    + + L  LD+  N F G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 546 PTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP 595
           P  +G+                         L+SL+IL++  N LSG VP
Sbjct: 483 PESLGQ-------------------------LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 3e-09
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 337 GQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLT 396
           G + N +   ++L ++ LS NS+ G +PP+ G ++SL  LDLS N+ NG I E   G LT
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLT 490

Query: 397 ELAFFYANGNSVNFKI 412
            L     NGNS++ ++
Sbjct: 491 SLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 3e-09
 Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 17/112 (15%)

Query: 411 KINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQ 470
               KW     +  L L +  L    P+ +   +HL  +++S   I   IP    +    
Sbjct: 413 STKGKWF----IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI--- 465

Query: 471 DTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIP 522
                       L VL+L  N F GSIP S+G LTSLR LNL  N LSG +P
Sbjct: 466 ----------TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 5e-09
 Identities = 49/141 (34%), Positives = 67/141 (47%), Gaps = 12/141 (8%)

Query: 4   LESERVALIKLKQDFKDPSNHLASWIGDVDCCE----WGGVVC--NNITGH--VLELNLE 55
           L  E  AL  LK     P      W GD  C      W G  C  ++  G   +  L L+
Sbjct: 370 LLEEVSALQTLKSSLGLPLR--FGWNGD-PCVPQQHPWSGADCQFDSTKGKWFIDGLGLD 426

Query: 56  RSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQ 115
              L G I   +  L+HL  ++LSGN  +G  IP  +GS+ +L  L+LS   F G IP  
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 116 LGNLSNLMHLDLSGSYYELRV 136
           LG L++L  L+L+G+    RV
Sbjct: 486 LGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 29/75 (38%), Positives = 40/75 (53%)

Query: 213 IPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE 272
           IP+ +  L  L  ++LS N  RG IP    ++TSL  LDLSYN FN +I +       L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 273 YLSLGYNRLQGTISS 287
            L+L  N L G + +
Sbjct: 494 ILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.4 bits (128), Expect = 3e-07
 Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 29/251 (11%)

Query: 496 SIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555
               ++  L  L SL+L  NRL   I    E  + L +LD+  N  + +IP  +G   S 
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLEL-TNLTSLDLDNNN-ITDIPPLIGLLKSN 141

Query: 556 LRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKA 615
           L+ L+L  NK+    P  + +L +L+ LD+++N LS  +PK ++N + +  +       +
Sbjct: 142 LKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Query: 616 IYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSL 675
                 E    +EE+ L                       NN   E+   ++NLK L  L
Sbjct: 200 DLPPEIELLSALEELDLS----------------------NNSIIELLSSLSNLKNLSGL 237

Query: 676 NLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIP 735
            LS+N  +  +PE+IGN+ ++E+LDLS NQIS     S+ SL+ L  L+LS N L   +P
Sbjct: 238 ELSNN-KLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALP 294

Query: 736 SSTQLQSFGAS 746
               L      
Sbjct: 295 LIALLLLLLEL 305

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 4e-07
 Identities = 62/187 (33%), Positives = 88/187 (47%), Gaps = 13/187 (6%)

Query: 220 LSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
           L  L  LDL+ N  R  I      LT+L  LDL  N              +L+ L L  N
Sbjct: 92  LLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN 150

Query: 280 RLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQL 339
           +++       L NL  +K LDLSFN    D+S++  ++S  +   L +L L G KIS  L
Sbjct: 151 KIE--SLPSPLRNLPNLKNLDLSFN----DLSDLPKLLSNLS--NLNNLDLSGNKIS-DL 201

Query: 340 TNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
             ++ L   L  L LS+NS+   L  +   L +L+ L+LSNN L  +   I  GNL+ L 
Sbjct: 202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESI--GNLSNLE 258

Query: 400 FFYANGN 406
               + N
Sbjct: 259 TLDLSNN 265

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 533 ALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSG 592
            L +      G IP  +  +   L+ +NL  N + G  P  +  ++SL++LD++YN  +G
Sbjct: 422 GLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Query: 593 SVPKCINNFTAM 604
           S+P+ +   T++
Sbjct: 481 SIPESLGQLTSL 492

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 671 GLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKL 730
            L+SL+LS+N            + +++ LDLSGN ++   P++ S L  L  L+LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 13/73 (17%)

Query: 445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTL 504
           +L  LD+SN R++ I    F                P+L+VL+L  N  T   P +   L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAF-------------KGLPNLKVLDLSGNNLTSISPEAFSGL 47

Query: 505 TSLRSLNLRSNRL 517
            SLRSL+L  N L
Sbjct: 48  PSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 39  GVVCNNITG--HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMD 96
           G + N+I+   H+  +NL  + + G I P+L  +  L +LDLS N F G  IPE +G + 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLT 490

Query: 97  NLRYLNLSGAGFAGWIPHQLG 117
           +LR LNL+G   +G +P  LG
Sbjct: 491 SLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 4  LESERVALIKLKQDF-KDPSNHLASWIG-DVDCCEWGGVVCN 43
          L  +R AL+  K     DPS  L+SW     D C W GV C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 223 LVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRL 281
           L  LDLS+N     IPDG FK L +L+ LDLS N   S   + FS    L  L L  N L
Sbjct: 2   LKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 8e-05
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285
           L L +   RG IP+    L  L+ ++LS N     I     +   LE L L YN   G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 286 -SSIGLENLTFIKTLDLSFNEL 306
             S+G   LT ++ L+L+ N L
Sbjct: 483 PESLGQ--LTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 246 SLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNE 305
           +L+ LDLS N+        F    +L+ L L  N L  +IS      L  +++LDLS N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 306 L 306
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 63/296 (21%), Positives = 97/296 (32%), Gaps = 81/296 (27%)

Query: 270 DLEYLSLGYNRLQGTISSI-----GLENLTFIKTLDLSFNELGQDISEILDIISACAAFE 324
            L+ L L  N        +     GL     ++ LDLS N LG D   +L   S   +  
Sbjct: 52  SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL--ESLLRSSS 109

Query: 325 LESLFLRGCKISGQLTNQLG-----LFKNLHTLALSDNSVSG-PLPPASGELS---SLTY 375
           L+ L L    +  +    L      L   L  L L  N + G      +  L     L  
Sbjct: 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE 169

Query: 376 LDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPH 435
           L+L+NN +                                     + LA  L++      
Sbjct: 170 LNLANNGIGD--------------------------------AGIRALAEGLKA------ 191

Query: 436 FPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTG 495
                    +L  LD++N  ++D        S   +T+         L VLNLG+N  T 
Sbjct: 192 -------NCNLEVLDLNNNGLTDE-----GASALAETLAS----LKSLEVLNLGDNNLTD 235

Query: 496 SI-----PISMGTLTSLRSLNLRSNRLSG-----IIPVPFENCSQLVALDMGENEF 541
           +         +    SL +L+L  N ++      +  V  E  S L  LD+  N+F
Sbjct: 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE-LDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 184 LHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKN 243
           L  F P   +    L +++LSGN   + +IP  +  ++ L  LDLS N F G IP+    
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 244 LTSLRYLDLSYN 255
           LTSLR L+L+ N
Sbjct: 489 LTSLRILNLNGN 500

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 32/104 (30%), Positives = 62/104 (59%), Gaps = 3/104 (2%)

Query: 648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS 707
           ++ +D+S N     +P  + NL  L++L+LS N  +  +P+ + N+ ++ +LDLSGN+IS
Sbjct: 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKIS 199

Query: 708 GKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN 751
             +P  +  LS L  L+LS+N ++  + S + L++     ++ N
Sbjct: 200 -DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 25/85 (29%)

Query: 506 SLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNK 565
           +L+SL+L +NRL+ I    F+                             L++L+L  N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLP-------------------------NLKVLDLSGNN 35

Query: 566 LHGIFPIQICHLSSLQILDVAYNRL 590
           L  I P     L SL+ LD++ N L
Sbjct: 36  LTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 325 LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384
           L+S+ L G  I G +   LG   +L  L LS NS +G +P + G+L+SL  L+L+ N+L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 385 G 385
           G
Sbjct: 504 G 504

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 648 VRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQI 706
           ++S+D+S NN    IP      L  L+ L+LS N+     PE    + S+ SLDLSGN +
Sbjct: 2   LKSLDLS-NNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 66/256 (25%), Positives = 104/256 (40%), Gaps = 42/256 (16%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMD-NLRYLNLSGAGFA 109
            L+L  + L   I+  L++L +L  LDL  N+     IP  IG +  NL+ L+LS     
Sbjct: 97  SLDLNLNRLRSNISE-LLELTNLTSLDLDNNNI--TDIPPLIGLLKSNLKELDLSDNKIE 153

Query: 110 GWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAG-PSLLEHLDTSDVDLIKASDWLLVI 168
             +P  L NL NL +LDLS +     + D+  L    S L +LD S   +      + ++
Sbjct: 154 S-LPSPLRNLPNLKNLDLSFN----DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELL 208

Query: 169 NSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDL 228
           ++L  L +      +L      + +N  +L+ L+LS N                      
Sbjct: 209 SALEELDLSNNSIIEL----LSSLSNLKNLSGLELSNNKLED------------------ 246

Query: 229 SSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI 288
                   +P+   NL++L  LDLS NQ   +      +  +L  L L  N L   +  I
Sbjct: 247 --------LPESIGNLSNLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPLI 296

Query: 289 GLENLTFIKTLDLSFN 304
            L  L     L+L   
Sbjct: 297 ALLLLLLELLLNLLLT 312

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 9e-04
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 483 LRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
           L+ L+L NN+ T     +   L +L+ L+L  N L+ I P  F     L +LD+  N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	790
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.69
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
PLN03150	623	hypothetical protein; Provisional	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
PLN03150	623	hypothetical protein; Provisional	99.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.04
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.88
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.59
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.46
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.44
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.24
KOG4341	483	consensus F-box protein containing LRR [General fu	98.17
PRK15386	426	type III secretion protein GogB; Provisional	98.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.11
KOG4341	483	consensus F-box protein containing LRR [General fu	97.92
PRK15386	426	type III secretion protein GogB; Provisional	97.82
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.8
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.77
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.61
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.61
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.61
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.6
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.6
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.53
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.06
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.92
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.85
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.55
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.54
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.52
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.71
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.51
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.42
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.92
KOG4308	478	consensus LRR-containing protein [Function unknown	89.78
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.88
smart00370	26	LRR Leucine-rich repeats, outliers.	87.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.92
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.67
KOG4308	478	consensus LRR-containing protein [Function unknown	86.23
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	82.06
smart00370	26	LRR Leucine-rich repeats, outliers.	82.06

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.6e-63  Score=591.07  Aligned_cols=582  Identities=35%  Similarity=0.546  Sum_probs=417.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCC
Q 047929            5 ESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQ   84 (790)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~   84 (790)
                      .+|..||++||+++.||.+..++|...++||.|.|+.|.+ .++|+.|+|+++.+.+.++.++..+++|++|+|++|.+.
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~  106 (968)
T PLN00113         28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS  106 (968)
T ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence            4788999999999988999999997768999999999984 579999999999999999999999999999999999998


Q ss_pred             CCCcCcccc-CCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCch
Q 047929           85 GIQIPEYIG-SMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASD  163 (790)
Q Consensus        85 ~~~l~~~~~-~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  163 (790)
                      +. +|..+. .+++|++|++++|++++.+|.  +.+++|++|++++|.+....                           
T Consensus       107 ~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~---------------------------  156 (968)
T PLN00113        107 GP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEI---------------------------  156 (968)
T ss_pred             Cc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccC---------------------------
Confidence            65 776654 899999999999999886774  45778888888877532110                           


Q ss_pred             hHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCC
Q 047929          164 WLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKN  243 (790)
Q Consensus       164 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~  243 (790)
                       +..++++++|++|++++|.+....+..+.++++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|..+++
T Consensus       157 -p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        157 -PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             -ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence             1134455555555555555544444455555555555555555443 34555555555555555555555445555555


Q ss_pred             CCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccC
Q 047929          244 LTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAF  323 (790)
Q Consensus       244 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  323 (790)
                      +++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.. +.+                             ++
T Consensus       235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~-----------------------------l~  284 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFS-----------------------------LQ  284 (968)
T ss_pred             CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-Hhh-----------------------------cc
Confidence            555555555555544444444444444444444444444333322 223                             33


Q ss_pred             CCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeec
Q 047929          324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA  403 (790)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l  403 (790)
                      +|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+                  
T Consensus       285 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~------------------  346 (968)
T PLN00113        285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG------------------  346 (968)
T ss_pred             CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC------------------
Confidence            44444444444444445555555555556665555555555555555555555555554433                  


Q ss_pred             CCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCC
Q 047929          404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDL  483 (790)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L  483 (790)
                                                     ..|..+..+++|+.|++++|.+..             .+|..+..+++|
T Consensus       347 -------------------------------~~p~~l~~~~~L~~L~Ls~n~l~~-------------~~p~~~~~~~~L  382 (968)
T PLN00113        347 -------------------------------EIPKNLGKHNNLTVLDLSTNNLTG-------------EIPEGLCSSGNL  382 (968)
T ss_pred             -------------------------------cCChHHhCCCCCcEEECCCCeeEe-------------eCChhHhCcCCC
Confidence                                           233334445566666666666443             233344556677


Q ss_pred             cEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCC
Q 047929          484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS  563 (790)
Q Consensus       484 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~  563 (790)
                      +.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++
T Consensus       383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~  461 (968)
T PLN00113        383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLAR  461 (968)
T ss_pred             CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcC
Confidence            7777777777777777777778888888888887777777777788888888888888777776554 578888888888


Q ss_pred             CcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhh
Q 047929          564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNS  643 (790)
Q Consensus       564 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  643 (790)
                      |++.+..|..+ ..++|+.|++++|++.+..|..+.++++                                        
T Consensus       462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~----------------------------------------  500 (968)
T PLN00113        462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE----------------------------------------  500 (968)
T ss_pred             ceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhc----------------------------------------
Confidence            88877766654 4578899999999988888876665554                                        


Q ss_pred             cccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEE
Q 047929          644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHL  723 (790)
Q Consensus       644 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  723 (790)
                          |+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|++++|++.+.+|..+..+++|+.|
T Consensus       501 ----L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        501 ----LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             ----cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence                4579999999998999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECcCCcccccCCCCCcCCccCCccccCC-cccCCC
Q 047929          724 NLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAP  757 (790)
Q Consensus       724 ~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~  757 (790)
                      ++++|++.+.+|..+++.++....+.|| .+|+.+
T Consensus       577 ~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        577 NISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             eccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999 799864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-51  Score=493.44  Aligned_cols=516  Identities=32%  Similarity=0.487  Sum_probs=365.7

Q ss_pred             CCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccc-cCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcE
Q 047929          147 LLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH-FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVF  225 (790)
Q Consensus       147 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~  225 (790)
                      +++.|+++++.+.+..  ...+..+++|++|++++|.+.. ++...+..+++|++|++++|.+.+ .+|.  ..+++|++
T Consensus        70 ~v~~L~L~~~~i~~~~--~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p~--~~l~~L~~  144 (968)
T PLN00113         70 RVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPR--GSIPNLET  144 (968)
T ss_pred             cEEEEEecCCCccccC--ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc-ccCc--cccCCCCE
Confidence            4555555555444331  1244455555555555555442 222333355555555555555433 2332  23445555


Q ss_pred             EEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCC
Q 047929          226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNE  305 (790)
Q Consensus       226 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~  305 (790)
                      |++++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|+.|++++| 
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n-  222 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYN-  222 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCC-
Confidence            555555555445555555555555555555554444555555555555555555544444433 444455555555544 


Q ss_pred             CCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCC
Q 047929          306 LGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNG  385 (790)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~  385 (790)
                                                  .+.+..|..+..+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+
T Consensus       223 ----------------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        223 ----------------------------NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             ----------------------------ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence                                        4444444444555555555555555544455555555555555555555443


Q ss_pred             cCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccc
Q 047929          386 MISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW  465 (790)
Q Consensus       386 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~  465 (790)
                      ..+. .+..+++|+.++++.|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.      
T Consensus       275 ~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------  347 (968)
T PLN00113        275 PIPP-SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE------  347 (968)
T ss_pred             cCch-hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc------
Confidence            3332 344455555555555555444455555667777888888888888888889999999999999997643      


Q ss_pred             cccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccC
Q 047929          466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNI  545 (790)
Q Consensus       466 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~  545 (790)
                             +|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+
T Consensus       348 -------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~  420 (968)
T PLN00113        348 -------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL  420 (968)
T ss_pred             -------CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence                   4455677899999999999999888988888999999999999999999999999999999999999999888


Q ss_pred             chhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccc
Q 047929          546 PTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDY  625 (790)
Q Consensus       546 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~  625 (790)
                      |..+. .+++|+.|++++|++++..+..+..+++|+.|++++|.+.+.+|..+.                          
T Consensus       421 p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--------------------------  473 (968)
T PLN00113        421 PSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--------------------------  473 (968)
T ss_pred             ChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--------------------------
Confidence            88764 799999999999999988888888999999999999999877775432                          


Q ss_pred             eeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCcc
Q 047929          626 IVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQ  705 (790)
Q Consensus       626 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~  705 (790)
                                         ...|+.|++++|++.+.+|..+..+++|++|++++|.+.+.+|+.+..+++|++|++++|.
T Consensus       474 -------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        474 -------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             -------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence                               1346799999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCccccCCCCCCEEECcCCcccccCCCC-CcCCccCCccccCCcccC-CC
Q 047929          706 ISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDLCG-AP  757 (790)
Q Consensus       706 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l~~-~~  757 (790)
                      +++.+|..+..+++|+.|++++|++.+.+|.. ..+.+|+.+++++|.+.+ .|
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            99999999999999999999999999999976 457889999999997765 44

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-35  Score=295.61  Aligned_cols=373  Identities=22%  Similarity=0.287  Sum_probs=302.8

Q ss_pred             CCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeec
Q 047929          324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA  403 (790)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l  403 (790)
                      .-+.|++++|.+....+..|.++++|+++++..|.++ .+|...+....|+.|++.+|.++....+ .+..++.|+.+++
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHH-HHHhHhhhhhhhh
Confidence            3466888888888777888888999999999998887 6776555666699999999988765544 6888899999999


Q ss_pred             CCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCC
Q 047929          404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDL  483 (790)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L  483 (790)
                      +.|.+.......|..-.++++|++++|.++..-...|..+.+|..|.++.|.++.++++.             |.+++.|
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~-------------Fk~L~~L  223 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRS-------------FKRLPKL  223 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHH-------------hhhcchh
Confidence            999888877788888889999999999999888888999999999999999998876654             4678999


Q ss_pred             cEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCC
Q 047929          484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS  563 (790)
Q Consensus       484 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~  563 (790)
                      +.|++..|.|...-...|.++++|+.|.+..|+|.......|-.|.++++|++..|++...-..|++ ++++|+.|++++
T Consensus       224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~  302 (873)
T KOG4194|consen  224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSY  302 (873)
T ss_pred             hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccch
Confidence            9999999999855466789999999999999999999999999999999999999999877777777 799999999999


Q ss_pred             CcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhh
Q 047929          564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNS  643 (790)
Q Consensus       564 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  643 (790)
                      |.|..+.+.++..+++|++|++++|+++..-+..|..+..|                                       
T Consensus       303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L---------------------------------------  343 (873)
T KOG4194|consen  303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL---------------------------------------  343 (873)
T ss_pred             hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh---------------------------------------
Confidence            99999888999999999999999999996666666655554                                       


Q ss_pred             cccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCC---ccccCCCCCCEEeCcCccCccccCccccCCCCC
Q 047929          644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIP---ETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL  720 (790)
Q Consensus       644 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  720 (790)
                           ++|.|++|++...-...|..+++|++|+|++|.+...+.   ..|.++++|+.|++.+|++......+|..+.+|
T Consensus       344 -----e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L  418 (873)
T KOG4194|consen  344 -----EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL  418 (873)
T ss_pred             -----hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence                 467777777765555566777778888888877765544   356777788888888888776666677777788


Q ss_pred             CEEECcCCcccccCCCCCcCCccCCccccCC-cccCC
Q 047929          721 NHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGA  756 (790)
Q Consensus       721 ~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~  756 (790)
                      ++|++.+|.+...-|..+.+..|++|.+... .+|+.
T Consensus       419 E~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  419 EHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC  455 (873)
T ss_pred             ceecCCCCcceeecccccccchhhhhhhcccceEEec
Confidence            8888888877766666665556777665553 55643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4e-35  Score=295.01  Aligned_cols=370  Identities=23%  Similarity=0.264  Sum_probs=267.2

Q ss_pred             CCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEE
Q 047929           72 HLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHL  151 (790)
Q Consensus        72 ~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L  151 (790)
                      .-+.|++++|++..+ -+..|-++++|+.+++.+|.++. +|...+-..+|++|+|.+|.|.....              
T Consensus        79 ~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~s--------------  142 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTS--------------  142 (873)
T ss_pred             ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccH--------------
Confidence            456699999998877 56778889999999999998886 88877777788999988886543222              


Q ss_pred             ECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCC
Q 047929          152 DTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN  231 (790)
Q Consensus       152 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~  231 (790)
                                    ..++.++.|++|+|+.|.++.++...|..-.++++|+|++|.|+... ...+..+.+|.+|.|+.|
T Consensus       143 --------------e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrN  207 (873)
T KOG4194|consen  143 --------------EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRN  207 (873)
T ss_pred             --------------HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccc-cccccccchheeeecccC
Confidence                          15666777788888888888887777777778888888888876533 333556777888888888


Q ss_pred             cCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcc
Q 047929          232 IFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS  311 (790)
Q Consensus       232 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  311 (790)
                      +++...+..|.++++|+.|++..|.+.......|.++++|+.|.+..|++. .+....|..+.++++|+|..|.+.....
T Consensus       208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~  286 (873)
T KOG4194|consen  208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNE  286 (873)
T ss_pred             cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhc
Confidence            888666677777888888888888776555567778888888888888776 4555557777778888887777765544


Q ss_pred             hhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhh
Q 047929          312 EILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIH  391 (790)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  391 (790)
                      .     .+.++..|+.|++++|.|....++.+...++|++|+|+.|+++...+..|..+..|++|.++.|.+.... +..
T Consensus       287 g-----~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~-e~a  360 (873)
T KOG4194|consen  287 G-----WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA-EGA  360 (873)
T ss_pred             c-----cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH-hhH
Confidence            4     4456667777777777777777777777777888888888777767777777777777777777766433 335


Q ss_pred             hccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccc
Q 047929          392 FGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQD  471 (790)
Q Consensus       392 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~  471 (790)
                      |.++++|+.|+++.|.+.+.+...                     ...|.++++|+.|++.+|++..+..++        
T Consensus       361 f~~lssL~~LdLr~N~ls~~IEDa---------------------a~~f~gl~~LrkL~l~gNqlk~I~krA--------  411 (873)
T KOG4194|consen  361 FVGLSSLHKLDLRSNELSWCIEDA---------------------AVAFNGLPSLRKLRLTGNQLKSIPKRA--------  411 (873)
T ss_pred             HHHhhhhhhhcCcCCeEEEEEecc---------------------hhhhccchhhhheeecCceeeecchhh--------
Confidence            667777777777777666554432                     123556777777777777776654443        


Q ss_pred             cCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccC
Q 047929          472 TIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRS  514 (790)
Q Consensus       472 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  514 (790)
                           |.++++|++|++.+|.|..+.+..|..+ .|++|.+..
T Consensus       412 -----fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  412 -----FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             -----hccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence                 3566777777777777776777777766 777776654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.1e-38  Score=303.69  Aligned_cols=266  Identities=27%  Similarity=0.418  Sum_probs=171.8

Q ss_pred             cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEEC
Q 047929           48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDL  127 (790)
Q Consensus        48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l  127 (790)
                      .+..+.++.+.++ .+.+.+.++..+.+|++..|+..  .+|.+++.+..++.++.++|++.. +|..+..+..|+++++
T Consensus        46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhc
Confidence            3556777777765 55567788888888888888877  578888888888888888888876 8888888888888888


Q ss_pred             cCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCC
Q 047929          128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNL  207 (790)
Q Consensus       128 s~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  207 (790)
                      ++|.+...++                                                     .++.+..|+.++..+|.
T Consensus       122 s~n~~~el~~-----------------------------------------------------~i~~~~~l~dl~~~~N~  148 (565)
T KOG0472|consen  122 SSNELKELPD-----------------------------------------------------SIGRLLDLEDLDATNNQ  148 (565)
T ss_pred             cccceeecCc-----------------------------------------------------hHHHHhhhhhhhccccc
Confidence            8775433322                                                     22333444445555555


Q ss_pred             CCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCc
Q 047929          208 FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISS  287 (790)
Q Consensus       208 l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~  287 (790)
                      +  ..+|+.++.+.++..+++.+|++....|. .-+++.|++|+...|-+. .+|..++.+.+|+-|++..|++. .+|+
T Consensus       149 i--~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe  223 (565)
T KOG0472|consen  149 I--SSLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE  223 (565)
T ss_pred             c--ccCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC
Confidence            5  34555555555666666666655533333 333566666665555443 34455566666666666666655 4443


Q ss_pred             ccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCc
Q 047929          288 IGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS  367 (790)
Q Consensus       288 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~  367 (790)
                        |..+..|++++++.|.+...+.+     ....+.++..|++++|+++ +.|+.+..+.+|+.||+++|.++ .+|..+
T Consensus       224 --f~gcs~L~Elh~g~N~i~~lpae-----~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sL  294 (565)
T KOG0472|consen  224 --FPGCSLLKELHVGENQIEMLPAE-----HLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSL  294 (565)
T ss_pred             --CCccHHHHHHHhcccHHHhhHHH-----Hhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccc
Confidence              55666666666666655443333     3345566666777777666 46666677778888888888887 566777


Q ss_pred             CCCCCCCEEECcCCcCCC
Q 047929          368 GELSSLTYLDLSNNNLNG  385 (790)
Q Consensus       368 ~~l~~L~~L~l~~n~~~~  385 (790)
                      +++ .|+.|.+.+|++..
T Consensus       295 gnl-hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  295 GNL-HLKFLALEGNPLRT  311 (565)
T ss_pred             ccc-eeeehhhcCCchHH
Confidence            877 78888888887654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.98  E-value=1.1e-36  Score=292.95  Aligned_cols=478  Identities=25%  Similarity=0.338  Sum_probs=282.2

Q ss_pred             CCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeC
Q 047929          173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDL  252 (790)
Q Consensus       173 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  252 (790)
                      .++.+.+++|.+....+ .+.++..|.+|++.+|.+  ..+|++++.+..++.++.+.|++. .+|..+..+..++.+++
T Consensus        46 ~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l--~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKL--SQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchhhccH-hhhcccceeEEEeccchh--hhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            45555666665554432 344555666666666655  345666666666666666666655 45555666666666666


Q ss_pred             CCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccC
Q 047929          253 SYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRG  332 (790)
Q Consensus       253 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  332 (790)
                      ++|.+.. .++.++.+-.|+.++..+|++. ..|.. +..+.++..+++.+|.+...++                     
T Consensus       122 s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~-~~~~~~l~~l~~~~n~l~~l~~---------------------  177 (565)
T KOG0472|consen  122 SSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPED-MVNLSKLSKLDLEGNKLKALPE---------------------  177 (565)
T ss_pred             cccceee-cCchHHHHhhhhhhhccccccc-cCchH-HHHHHHHHHhhccccchhhCCH---------------------
Confidence            6665543 3344555555555555555554 33333 3444444444444444433333                     


Q ss_pred             CccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeec
Q 047929          333 CKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKI  412 (790)
Q Consensus       333 ~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  412 (790)
                              ..+. ++.|++++...|-+. .+|+.++.+.+|..|++..|++...+   .|+++..|+.+++..|.+..  
T Consensus       178 --------~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP---ef~gcs~L~Elh~g~N~i~~--  242 (565)
T KOG0472|consen  178 --------NHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP---EFPGCSLLKELHVGENQIEM--  242 (565)
T ss_pred             --------HHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCC---CCCccHHHHHHHhcccHHHh--
Confidence                    2222 555555555555444 45555555555555555555554332   34555555555555544321  


Q ss_pred             CCCCCCcccceEEEcCCCCCCCCCCc-ccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCC
Q 047929          413 NSKWVPPFQLLALRLRSCHLGPHFPS-WLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNN  491 (790)
Q Consensus       413 ~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n  491 (790)
                                             +|. ...+++++..||+.+|++.+              +|+.++-+.+|+.||+++|
T Consensus       243 -----------------------lpae~~~~L~~l~vLDLRdNklke--------------~Pde~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  243 -----------------------LPAEHLKHLNSLLVLDLRDNKLKE--------------VPDEICLLRSLERLDLSNN  285 (565)
T ss_pred             -----------------------hHHHHhcccccceeeecccccccc--------------CchHHHHhhhhhhhcccCC
Confidence                                   121 23355667777777777653              3455566677777777777


Q ss_pred             cccccCCcCCCCCCCCCEEEccCCcccccCCccccC-----CCCCcE----EECcCCc----ccccCchhhh---hcCCC
Q 047929          492 KFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFEN-----CSQLVA----LDMGENE----FVGNIPTWMG---ERFSR  555 (790)
Q Consensus       492 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~-----l~~L~~----L~l~~n~----~~~~~~~~~~---~~~~~  555 (790)
                      .++ ..|..++++ +|+.|.+.+|++..+-...+.+     ++-|+.    =-++.-+    -....+.+.+   ..+-+
T Consensus       286 ~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~  363 (565)
T KOG0472|consen  286 DIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT  363 (565)
T ss_pred             ccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhh
Confidence            777 456667777 7777777777764321111111     000000    0000000    0001111111   12345


Q ss_pred             CcEEEcCCCcccccCCccccCC--CCCcEEEccCCcccccCCcchhccccccccC-Cccccceeecccccccceeeeeee
Q 047929          556 LRILNLRSNKLHGIFPIQICHL--SSLQILDVAYNRLSGSVPKCINNFTAMATIG-SHHQVKAIYHASFENDYIVEEISL  632 (790)
Q Consensus       556 L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~-~~~~~~~~~~~~~~~~~~~~~~~~  632 (790)
                      .+.|++++-+++.+..+.|..-  .-...++++.|++. .+|..+..+..+.+.- ..+.                    
T Consensus       364 tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn--------------------  422 (565)
T KOG0472|consen  364 TKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNN--------------------  422 (565)
T ss_pred             hhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcC--------------------
Confidence            6666666666664332222221  12556777777765 5666655555543211 0000                    


Q ss_pred             eeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCc
Q 047929          633 VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQ  712 (790)
Q Consensus       633 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  712 (790)
                       ...+.....+.++.+..|+|++|.+. .+|..++.+..|++|+++.|++. .+|+.+..+..|+.+-.++|++....|+
T Consensus       423 -~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~  499 (565)
T KOG0472|consen  423 -KISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPS  499 (565)
T ss_pred             -ccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChH
Confidence             01111223345667789999999888 78999999999999999999987 8899888888899998899999988888


Q ss_pred             cccCCCCCCEEECcCCcccccCCCCCcCCccCCccccCCcccCC
Q 047929          713 SMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGA  756 (790)
Q Consensus       713 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n~l~~~  756 (790)
                      +++.|..|.+||+.+|.+...+|..|...+++++.+.||+|+.+
T Consensus       500 ~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~P  543 (565)
T KOG0472|consen  500 GLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQP  543 (565)
T ss_pred             HhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCC
Confidence            89999999999999999998888889999999999999999833

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=3.1e-33  Score=296.86  Aligned_cols=274  Identities=25%  Similarity=0.312  Sum_probs=151.5

Q ss_pred             EEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCc
Q 047929           52 LNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY  131 (790)
Q Consensus        52 L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~  131 (790)
                      +|.+++.++ .+|..+..-.+++.|+++.|.+.... .+++.+..+|+.||+++|.+.. +|..+..+.+|+.|+++.|.
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeecccccccc-CCchhhhHHHHhhcccchhh
Confidence            456666665 66767777777888888888776432 3555666679999999998876 88888889999999998887


Q ss_pred             ccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCC
Q 047929          132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKT  211 (790)
Q Consensus       132 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~  211 (790)
                      |...+.                             ...++.+|+.+.|.+|..... |..+..+++|++|++++|.+  .
T Consensus        80 i~~vp~-----------------------------s~~~~~~l~~lnL~~n~l~~l-P~~~~~lknl~~LdlS~N~f--~  127 (1081)
T KOG0618|consen   80 IRSVPS-----------------------------SCSNMRNLQYLNLKNNRLQSL-PASISELKNLQYLDLSFNHF--G  127 (1081)
T ss_pred             HhhCch-----------------------------hhhhhhcchhheeccchhhcC-chhHHhhhcccccccchhcc--C
Confidence            665542                             333444444444444333322 33455556666666666665  3


Q ss_pred             CcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCccccc
Q 047929          212 SIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLE  291 (790)
Q Consensus       212 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~  291 (790)
                      .+|.-+..+..+..+..++|.....    ++... ++.+++..+.+.+.++..+..+..  .|++.+|.+. ..   .+.
T Consensus       128 ~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls  196 (1081)
T KOG0618|consen  128 PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLS  196 (1081)
T ss_pred             CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhh
Confidence            4555555566666666666621111    22222 555555555555555544444443  4666666543 11   144


Q ss_pred             CCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCC
Q 047929          292 NLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELS  371 (790)
Q Consensus       292 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~  371 (790)
                      ++++|+.+....|.+.....         .-++++.|+...|.++...+.  ....+|+.++++++++. .+|.+++.+.
T Consensus       197 ~~~~l~~l~c~rn~ls~l~~---------~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~  264 (1081)
T KOG0618|consen  197 NLANLEVLHCERNQLSELEI---------SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACA  264 (1081)
T ss_pred             hccchhhhhhhhcccceEEe---------cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcc
Confidence            55555555555554432211         123445555555544422111  11234555555555554 3334555555


Q ss_pred             CCCEEECcCCcC
Q 047929          372 SLTYLDLSNNNL  383 (790)
Q Consensus       372 ~L~~L~l~~n~~  383 (790)
                      +|+.+++.+|.+
T Consensus       265 nle~l~~n~N~l  276 (1081)
T KOG0618|consen  265 NLEALNANHNRL  276 (1081)
T ss_pred             cceEecccchhH
Confidence            555555555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.9e-33  Score=297.10  Aligned_cols=464  Identities=26%  Similarity=0.370  Sum_probs=331.9

Q ss_pred             CCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCC
Q 047929          174 LKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLS  253 (790)
Q Consensus       174 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  253 (790)
                      ++.|+++.|.+...+.++..+.-+|+.|++++|.+.  .+|..+..+.+|+.|+++.|.|. ..|....++.+|++|.|.
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            666677777666655555555556888888888773  46777777778888888888777 456677777888888887


Q ss_pred             CCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCC
Q 047929          254 YNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGC  333 (790)
Q Consensus       254 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (790)
                      +|.+. ..|..+..+.+|+.|+++.|++. .+|.. +..++.+..+..++|....          ..+-..++.+++..+
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt~~~~~~~s~N~~~~----------~lg~~~ik~~~l~~n  166 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLV-IEVLTAEEELAASNNEKIQ----------RLGQTSIKKLDLRLN  166 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccchhccC-CCchh-HHhhhHHHHHhhhcchhhh----------hhccccchhhhhhhh
Confidence            77665 46677777788888888887765 45554 6667777777777762111          111112667777777


Q ss_pred             ccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecC
Q 047929          334 KISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKIN  413 (790)
Q Consensus       334 ~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  413 (790)
                      .+.+.++..+..+..  .++|++|.+. .  ..+..++.|+.|....|.+....     -..++++.++...|.+.  ..
T Consensus       167 ~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~--~~  234 (1081)
T KOG0618|consen  167 VLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLT--TL  234 (1081)
T ss_pred             hcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcce--ee
Confidence            766666666655555  5888887775 2  23456677777777777655321     23456777777777665  22


Q ss_pred             CCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcc
Q 047929          414 SKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKF  493 (790)
Q Consensus       414 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~  493 (790)
                      .....+.+++.++++.+.+... |+|+..+.+|+.+...+|.++.+              |..+....+|+.|.+..|.+
T Consensus       235 ~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~l--------------p~ri~~~~~L~~l~~~~nel  299 (1081)
T KOG0618|consen  235 DVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVAL--------------PLRISRITSLVSLSAAYNEL  299 (1081)
T ss_pred             ccccccccceeeecchhhhhcc-hHHHHhcccceEecccchhHHhh--------------HHHHhhhhhHHHHHhhhhhh
Confidence            2234466788888888887754 48999999999999999988543              34455667888999999988


Q ss_pred             cccCCcCCCCCCCCCEEEccCCcccccCCccccCCCC-CcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCc
Q 047929          494 TGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQ-LVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPI  572 (790)
Q Consensus       494 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~  572 (790)
                      . .+|.....+++|++|+|..|++....+..+..... |..|+.+.|++. ..|..-...++.|+.|++.+|.+++..-.
T Consensus       300 ~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p  377 (1081)
T KOG0618|consen  300 E-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFP  377 (1081)
T ss_pred             h-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchh
Confidence            8 56667777899999999999988655544444443 677777777765 55544334567889999999999876666


Q ss_pred             cccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEE
Q 047929          573 QICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSID  652 (790)
Q Consensus       573 ~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  652 (790)
                      .+.+.+.|+.|++++|++......++.++..                                            |++|+
T Consensus       378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~--------------------------------------------LeeL~  413 (1081)
T KOG0618|consen  378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEE--------------------------------------------LEELN  413 (1081)
T ss_pred             hhccccceeeeeecccccccCCHHHHhchHH--------------------------------------------hHHHh
Confidence            7788889999999999887333335555444                                            45899


Q ss_pred             ccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcccc-CccccCCCCCCEEECcCCcc
Q 047929          653 ISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI-PQSMSSLSFLNHLNLSDNKL  730 (790)
Q Consensus       653 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l  730 (790)
                      ||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++... |..... +.|++||++||.-
T Consensus       414 LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  414 LSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             cccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            9999998 78888899999999999999987 777 6888999999999999987543 433332 7899999999974

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.1e-31  Score=272.04  Aligned_cols=254  Identities=26%  Similarity=0.355  Sum_probs=135.3

Q ss_pred             cCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCC
Q 047929           68 VDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSL  147 (790)
Q Consensus        68 ~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~  147 (790)
                      +-++-+|-.|+++|.+++..+|..+..+++++-|.|..+++.. +|+.++.|.+|+||.+++|++.....          
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~vhG----------   72 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLISVHG----------   72 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHhhhh----------
Confidence            3455666677777777766677777777777777777777765 77777777777777777775432221          


Q ss_pred             CcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccc-cCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEE
Q 047929          148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH-FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL  226 (790)
Q Consensus       148 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L  226 (790)
                                         .+..+|.|+.+.++.|++.. -.|..+-++..|.+|||++|++  ...|..+..-+++-.|
T Consensus        73 -------------------ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL--~EvP~~LE~AKn~iVL  131 (1255)
T KOG0444|consen   73 -------------------ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL--REVPTNLEYAKNSIVL  131 (1255)
T ss_pred             -------------------hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh--hhcchhhhhhcCcEEE
Confidence                               33444444544444444322 1222333455555556666555  2355555555555555


Q ss_pred             EccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCC
Q 047929          227 DLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL  306 (790)
Q Consensus       227 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~  306 (790)
                      +|++|.|.++....|.+++.|-.|++++|++.. .|..+..+.+|++|.+++|++.. .....+..++.|+.|.+++..-
T Consensus       132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             EcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchhhhhhhcccccc
Confidence            555555554333334555555555555555542 33344455555555555554431 1111123333444444444322


Q ss_pred             CCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCC
Q 047929          307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN  384 (790)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~  384 (790)
                      +                            ...+|..+..+.+|..++++.|.+. .+|+.+..+++|+.|++++|+++
T Consensus       210 T----------------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  210 T----------------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             h----------------------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence            1                            1123444445555555555555554 44555555555555555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=8.7e-31  Score=265.59  Aligned_cols=368  Identities=24%  Similarity=0.288  Sum_probs=250.5

Q ss_pred             CCcEEEEEcCCCCCC-ccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcE
Q 047929           46 TGHVLELNLERSELG-GKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH  124 (790)
Q Consensus        46 ~~~v~~L~L~~~~~~-~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~  124 (790)
                      .+-||.+|+++|.+. +..|..+.+++.++.|.|...++.  .+|+.++++.+|++|.+++|++.. +-..+..|+.||.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence            456899999999997 568899999999999999999998  689999999999999999999887 6667899999999


Q ss_pred             EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECC
Q 047929          125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLS  204 (790)
Q Consensus       125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~  204 (790)
                      +++++|++... ..+..+-.+..|..||+++|.+...+.   .+..-+++-+|++++|+|..++...|.+++.|-.|||+
T Consensus        83 v~~R~N~LKns-GiP~diF~l~dLt~lDLShNqL~EvP~---~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   83 VIVRDNNLKNS-GIPTDIFRLKDLTILDLSHNQLREVPT---NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             HhhhccccccC-CCCchhcccccceeeecchhhhhhcch---hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence            99999986532 334556677888888888888887755   66677788888888888888888888888888888888


Q ss_pred             CCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCC-ccccccccCCCCCCEEEccCccccc
Q 047929          205 GNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFN-STISDCFSNFDDLEYLSLGYNRLQG  283 (790)
Q Consensus       205 ~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~l~~  283 (790)
                      +|++  ..+|+.+..+.+|++|+|++|.+...--..+..++.|++|.+++.+-+ .-+|..+..+.+|..++++.|.+. 
T Consensus       159 ~NrL--e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-  235 (1255)
T KOG0444|consen  159 NNRL--EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-  235 (1255)
T ss_pred             cchh--hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence            8887  567888888888888888888765332233455666777777766432 335666677777777777777765 


Q ss_pred             ccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCC
Q 047929          284 TISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL  363 (790)
Q Consensus       284 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~  363 (790)
                      .+|.. +.++++|+.|++++|.++....                              ..+...+|++|+++.|.++ .+
T Consensus       236 ~vPec-ly~l~~LrrLNLS~N~iteL~~------------------------------~~~~W~~lEtLNlSrNQLt-~L  283 (1255)
T KOG0444|consen  236 IVPEC-LYKLRNLRRLNLSGNKITELNM------------------------------TEGEWENLETLNLSRNQLT-VL  283 (1255)
T ss_pred             cchHH-HhhhhhhheeccCcCceeeeec------------------------------cHHHHhhhhhhccccchhc-cc
Confidence            44444 5666667777776666654322                              2233345566666666655 55


Q ss_pred             CcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccC
Q 047929          364 PPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQ  443 (790)
Q Consensus       364 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  443 (790)
                      |.++..++.|+.|.+.+|+++-......++++..|+.+...+|.+                         ...|+.+..|
T Consensus       284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-------------------------ElVPEglcRC  338 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-------------------------ELVPEGLCRC  338 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-------------------------ccCchhhhhh
Confidence            555556666666666555543221111233333333333333322                         1344455556


Q ss_pred             CCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCccc
Q 047929          444 KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT  494 (790)
Q Consensus       444 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~  494 (790)
                      ..|+.|.++.|.+..              +|+.+.-++.|+.|++..|.-.
T Consensus       339 ~kL~kL~L~~NrLiT--------------LPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  339 VKLQKLKLDHNRLIT--------------LPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             HHHHHhcccccceee--------------chhhhhhcCCcceeeccCCcCc
Confidence            666666666665532              3444455556666666665433

>PLN03210 Resistant to P

Probab=99.88  E-value=1.1e-20  Score=226.70  Aligned_cols=340  Identities=17%  Similarity=0.225  Sum_probs=167.1

Q ss_pred             ccccCCCCCCEEEccCccc------ccccCcccccCC-CCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCcc
Q 047929          263 DCFSNFDDLEYLSLGYNRL------QGTISSIGLENL-TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKI  335 (790)
Q Consensus       263 ~~l~~l~~L~~L~l~~~~l------~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (790)
                      .+|..+++|+.|.+..+..      ...+|.. +..+ ++|+.|++.++.+...+..       ..+.+|++|++.++.+
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~-------f~~~~L~~L~L~~s~l  623 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSN-------FRPENLVKLQMQGSKL  623 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCCCCCCCCc-------CCccCCcEEECcCccc
Confidence            3455555565555543321      1122222 3333 2466666666655444332       1234566666666665


Q ss_pred             ccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCC
Q 047929          336 SGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSK  415 (790)
Q Consensus       336 ~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~  415 (790)
                      . .++..+..+++|+.++++++.....+| .++.+++|++|++++|......+. .++.+++|+.+++.++.....++..
T Consensus       624 ~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        624 E-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             c-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCc
Confidence            5 344445556666666666655444454 355666666666666653332222 2334444444444332211111111


Q ss_pred             CCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccc
Q 047929          416 WVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTG  495 (790)
Q Consensus       416 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  495 (790)
                      . .+.+|+.|.+++|.....+|..   .                                     ++|+.|++++|.+. 
T Consensus       701 i-~l~sL~~L~Lsgc~~L~~~p~~---~-------------------------------------~nL~~L~L~~n~i~-  738 (1153)
T PLN03210        701 I-NLKSLYRLNLSGCSRLKSFPDI---S-------------------------------------TNISWLDLDETAIE-  738 (1153)
T ss_pred             C-CCCCCCEEeCCCCCCccccccc---c-------------------------------------CCcCeeecCCCccc-
Confidence            1 2333444444444333333221   1                                     34444444444443 


Q ss_pred             cCCcCCCCCCCCCEEEccCCcccc-------cCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccc
Q 047929          496 SIPISMGTLTSLRSLNLRSNRLSG-------IIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHG  568 (790)
Q Consensus       496 ~~~~~~~~l~~L~~L~L~~n~i~~-------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~  568 (790)
                      .+|..+ .+++|+.|.+.++....       ..+..+...++|+.|++++|.....+|..+. .+++|+.|++++|...+
T Consensus       739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~  816 (1153)
T PLN03210        739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLE  816 (1153)
T ss_pred             cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcC
Confidence            233222 24444444444432111       1111122335666666666655555666543 56666666666664433


Q ss_pred             cCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccce
Q 047929          569 IFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLV  648 (790)
Q Consensus       569 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  648 (790)
                      .+|..+ .+++|+.|++++|.....+|..                                               ..++
T Consensus       817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------------------------------------------~~nL  848 (1153)
T PLN03210        817 TLPTGI-NLESLESLDLSGCSRLRTFPDI-----------------------------------------------STNI  848 (1153)
T ss_pred             eeCCCC-CccccCEEECCCCCcccccccc-----------------------------------------------cccc
Confidence            445443 5666666666666543333321                                               1234


Q ss_pred             eEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccC
Q 047929          649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQI  706 (790)
Q Consensus       649 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  706 (790)
                      +.|+|++|.+. .+|..+..+++|+.|++++|+-...+|..+..+++|+.|++++|.-
T Consensus       849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            56666666665 4566666666777777766554445665666666677777666643

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=1.6e-20  Score=225.29  Aligned_cols=315  Identities=21%  Similarity=0.230  Sum_probs=220.5

Q ss_pred             CCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEc
Q 047929          348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRL  427 (790)
Q Consensus       348 ~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l  427 (790)
                      +|+.|++.++.+. .+|..+ ...+|+.|++.++.+.....  .+..+++|+.++++.+.....++ .+..+++|+.|++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~--~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWD--GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccccc--ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence            4666666666554 444444 34566666666665543322  23455666666665543222222 2455678888888


Q ss_pred             CCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047929          428 RSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSL  507 (790)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  507 (790)
                      .+|.....+|..+..+++|+.|++++|....             .+|..+ .+++|+.|++++|...+.+|..   .++|
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-------------~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL  727 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLE-------------ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNI  727 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcC-------------ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCc
Confidence            8888777888888888999999998876332             223322 5788999999998766555532   4678


Q ss_pred             CEEEccCCcccccCCccccCCCCCcEEECcCCcccc------cCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCc
Q 047929          508 RSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVG------NIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQ  581 (790)
Q Consensus       508 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~  581 (790)
                      +.|++++|.+... |..+ .+++|+.|.+.++....      .++......+++|+.|++++|.....+|..++++++|+
T Consensus       728 ~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~  805 (1153)
T PLN03210        728 SWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE  805 (1153)
T ss_pred             CeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence            8999999987643 4333 56788888887653210      11122222457899999999887777888888999999


Q ss_pred             EEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCC
Q 047929          582 ILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE  661 (790)
Q Consensus       582 ~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  661 (790)
                      .|++++|...+.+|..+ +                                            +++|+.|++++|.....
T Consensus       806 ~L~Ls~C~~L~~LP~~~-~--------------------------------------------L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        806 HLEIENCINLETLPTGI-N--------------------------------------------LESLESLDLSGCSRLRT  840 (1153)
T ss_pred             EEECCCCCCcCeeCCCC-C--------------------------------------------ccccCEEECCCCCcccc
Confidence            99999887655566433 2                                            33467899999876656


Q ss_pred             CCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCC
Q 047929          662 IPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIP  735 (790)
Q Consensus       662 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  735 (790)
                      +|..   .++|++|+|++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.-...++
T Consensus       841 ~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        841 FPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             cccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence            6653   468999999999997 688899999999999999987777888889999999999999997665444

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=2.2e-23  Score=201.55  Aligned_cols=290  Identities=22%  Similarity=0.210  Sum_probs=178.5

Q ss_pred             CCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccC-cccccccCcccccCCCCCCEE
Q 047929          221 SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY-NRLQGTISSIGLENLTFIKTL  299 (790)
Q Consensus       221 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~l~~l~~L~~L  299 (790)
                      +.-..++|..|+|+...|.+|+.+++|+.|++++|.|+.+.|.+|.++++|..|.+.+ |+|+ .++...|..+..++.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            3567788888888887788888888888888888888888888888888888777766 7776 6666667777777777


Q ss_pred             EccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECc
Q 047929          300 DLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLS  379 (790)
Q Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~  379 (790)
                      .+.-|.+.....+     .+..++++..|.+.+|.+.......+..+..++.+.+..|....     .-+++.+......
T Consensus       146 llNan~i~Cir~~-----al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a~  215 (498)
T KOG4237|consen  146 LLNANHINCIRQD-----ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLAM  215 (498)
T ss_pred             hcChhhhcchhHH-----HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHHhh
Confidence            7766666544443     23344455555555555553333345555556666555554210     0111111111000


Q ss_pred             CCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCc-ccceEEEcCCCCCCCCCC-cccccCCCCCEEEccCCccC
Q 047929          380 NNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPP-FQLLALRLRSCHLGPHFP-SWLHSQKHLSKLDISNTRIS  457 (790)
Q Consensus       380 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~  457 (790)
                      .        .+.+++..-..-..+....+.......+... ..+.+-....|......| ..|..+++|++|++++|+++
T Consensus       216 ~--------~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~  287 (498)
T KOG4237|consen  216 N--------PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT  287 (498)
T ss_pred             c--------hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence            0        0012222211111112222211111111111 111111122232222333 34788889999999999988


Q ss_pred             CCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECc
Q 047929          458 DIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMG  537 (790)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  537 (790)
                      .+.+.+             |.....+++|.+..|++.......|.++..|+.|+|++|+|+...|..|..+.+|..|++-
T Consensus       288 ~i~~~a-------------Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  288 RIEDGA-------------FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             hhhhhh-------------hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence            765544             4566788889999998886666678888889999999999988888889888899999888


Q ss_pred             CCccc
Q 047929          538 ENEFV  542 (790)
Q Consensus       538 ~n~~~  542 (790)
                      .|++.
T Consensus       355 ~Np~~  359 (498)
T KOG4237|consen  355 SNPFN  359 (498)
T ss_pred             cCccc
Confidence            87654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=7.4e-23  Score=197.91  Aligned_cols=292  Identities=23%  Similarity=0.247  Sum_probs=169.9

Q ss_pred             CCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCC-CcccccCCCCCCCCCCCcE
Q 047929           46 TGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSG-AGFAGWIPHQLGNLSNLMH  124 (790)
Q Consensus        46 ~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~-~~~~~~lp~~l~~l~~L~~  124 (790)
                      +...++|+|..|+|+...+.+|..+++||.||||+|.|+.+ -|++|.++..|-.|-+-+ |+|+...-..|+.|..|+-
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            45667777777777756667777777777777777777766 577777777665554433 6676633345666666666


Q ss_pred             EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECC
Q 047929          125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLS  204 (790)
Q Consensus       125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~  204 (790)
                      |.+.-|++.....                            ..+..++++..|.+..|.+..+...+|..+..++.+.+.
T Consensus       145 LllNan~i~Cir~----------------------------~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA  196 (498)
T KOG4237|consen  145 LLLNANHINCIRQ----------------------------DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA  196 (498)
T ss_pred             HhcChhhhcchhH----------------------------HHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence            6665554332211                            266777777777777777777777777777777777777


Q ss_pred             CCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccC-CCCCCEEEccCccccc
Q 047929          205 GNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSN-FDDLEYLSLGYNRLQG  283 (790)
Q Consensus       205 ~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~l~~  283 (790)
                      .|.+..      .++++.+..- +.      ..|-.++.........+.+.++..+.+..|.. +..+..=-.+.+...+
T Consensus       197 ~np~ic------dCnL~wla~~-~a------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~  263 (498)
T KOG4237|consen  197 QNPFIC------DCNLPWLADD-LA------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDS  263 (498)
T ss_pred             cCcccc------ccccchhhhH-Hh------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCC
Confidence            765311      1111111110 00      11112222222222233333333222222211 1111111112222222


Q ss_pred             ccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCC
Q 047929          284 TISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL  363 (790)
Q Consensus       284 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~  363 (790)
                      ..|...|..+++|++|++++|.++.....     .+.+...+++|.+..|++.......|.++..|+.|+|++|+|+...
T Consensus       264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~-----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~  338 (498)
T KOG4237|consen  264 ICPAKCFKKLPNLRKLNLSNNKITRIEDG-----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA  338 (498)
T ss_pred             cChHHHHhhcccceEeccCCCccchhhhh-----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence            34444466666666666666666655554     3344556677777777666555566777888888888888888788


Q ss_pred             CcCcCCCCCCCEEECcCCcCC
Q 047929          364 PPASGELSSLTYLDLSNNNLN  384 (790)
Q Consensus       364 ~~~~~~l~~L~~L~l~~n~~~  384 (790)
                      |.+|..+.+|.+|++-.|++.
T Consensus       339 ~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  339 PGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cccccccceeeeeehccCccc
Confidence            888888888888888777654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=2.3e-18  Score=190.95  Aligned_cols=80  Identities=25%  Similarity=0.376  Sum_probs=51.0

Q ss_pred             eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929          648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD  727 (790)
Q Consensus       648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  727 (790)
                      |+.|++++|.+. .+|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++
T Consensus       384 L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        384 LKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             cceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence            446666677666 34432   246777777777766 34532   245667777777776 5677777777777777777


Q ss_pred             CcccccCCC
Q 047929          728 NKLVGKIPS  736 (790)
Q Consensus       728 n~l~~~~p~  736 (790)
                      |++.+.+|.
T Consensus       455 N~Ls~~~~~  463 (788)
T PRK15387        455 NPLSERTLQ  463 (788)
T ss_pred             CCCCchHHH
Confidence            777765544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.74  E-value=3e-17  Score=182.18  Aligned_cols=260  Identities=25%  Similarity=0.271  Sum_probs=152.6

Q ss_pred             cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEEC
Q 047929           48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDL  127 (790)
Q Consensus        48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l  127 (790)
                      .-..|+++++.++ .+|+.+.  ++|+.|++++|.++  .+|.   .+++|++|++++|+++. +|..   .++|++|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt--~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC--CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence            3445777777776 5666554  37788888887777  4554   24677888888877775 5542   356777777


Q ss_pred             cCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCC
Q 047929          128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNL  207 (790)
Q Consensus       128 s~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  207 (790)
                      ++|.+...+.                                ..++|+.|++++|.+..++.    ..++|+.|++++|.
T Consensus       270 s~N~L~~Lp~--------------------------------lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~  313 (788)
T PRK15387        270 FSNPLTHLPA--------------------------------LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQ  313 (788)
T ss_pred             cCCchhhhhh--------------------------------chhhcCEEECcCCccccccc----cccccceeECCCCc
Confidence            7765442221                                11334455555555554432    12456666666665


Q ss_pred             CCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCc
Q 047929          208 FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISS  287 (790)
Q Consensus       208 l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~  287 (790)
                      +..  +|..   ..+|+.|++++|.+.+ +|. +  ..+|++|++++|++... |..   ..+|+.|++++|.+. .+|.
T Consensus       314 L~~--Lp~l---p~~L~~L~Ls~N~L~~-LP~-l--p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~LP~  379 (788)
T PRK15387        314 LAS--LPAL---PSELCKLWAYNNQLTS-LPT-L--PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPA  379 (788)
T ss_pred             ccc--CCCC---cccccccccccCcccc-ccc-c--ccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cCcc
Confidence            532  3432   2345556666666553 332 1  13566666666666542 221   245566666666665 3433


Q ss_pred             ccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCc
Q 047929          288 IGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS  367 (790)
Q Consensus       288 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~  367 (790)
                      .    ..+|+.|++++|.+...+.         ..++|+.|++++|.+.. +|..   ..+|+.|++++|.++ .+|..+
T Consensus       380 l----~~~L~~LdLs~N~Lt~LP~---------l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl  441 (788)
T PRK15387        380 L----PSGLKELIVSGNRLTSLPV---------LPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESL  441 (788)
T ss_pred             c----ccccceEEecCCcccCCCC---------cccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHH
Confidence            2    2456677777776654322         12457777777777764 3432   245677888888876 567777


Q ss_pred             CCCCCCCEEECcCCcCCCcC
Q 047929          368 GELSSLTYLDLSNNNLNGMI  387 (790)
Q Consensus       368 ~~l~~L~~L~l~~n~~~~~~  387 (790)
                      ..+++|+.|++++|++++..
T Consensus       442 ~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        442 IHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             hhccCCCeEECCCCCCCchH
Confidence            77888888888888877543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.69  E-value=3.7e-16  Score=174.84  Aligned_cols=309  Identities=18%  Similarity=0.219  Sum_probs=169.2

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCC----CCCCCCCcccCc----------------eeecCCCCcEEEEEcCCCCCCccc--
Q 047929            6 SERVALIKLKQDFKDPSNHLAS----WIGDVDCCEWGG----------------VVCNNITGHVLELNLERSELGGKI--   63 (790)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~----w~~~~~~~~~~~----------------~~c~~~~~~v~~L~L~~~~~~~~~--   63 (790)
                      ++...++++.+-+..|. +..+    |..+++.|.-+.                |.|.  .+.|+++...+.......  
T Consensus        63 ~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~~~~~~  139 (754)
T PRK15370         63 EEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQASSASG  139 (754)
T ss_pred             HHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCcccccccccccccccCCC
Confidence            57778899998886554 4444    977788885443                5665  568888887764322110  


Q ss_pred             cccC-------------------------------cCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccC
Q 047929           64 NPAL-------------------------------VDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWI  112 (790)
Q Consensus        64 ~~~l-------------------------------~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~l  112 (790)
                      +...                               +-..+...|+++++.++  .+|..+.  ++|+.|++++|+++. +
T Consensus       140 ~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt--sLP~~Ip--~~L~~L~Ls~N~Lts-L  214 (754)
T PRK15370        140 SKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT--TIPACIP--EQITTLILDNNELKS-L  214 (754)
T ss_pred             CCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC--cCCcccc--cCCcEEEecCCCCCc-C
Confidence            0000                               00123444555555444  2344332  345555555555553 4


Q ss_pred             CCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccC
Q 047929          113 PHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLAS  192 (790)
Q Consensus       113 p~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  192 (790)
                      |..+.  .+|++|++++|.                          +...+.   .+  .+.|+.|++++|.+..++.. +
T Consensus       215 P~~l~--~nL~~L~Ls~N~--------------------------LtsLP~---~l--~~~L~~L~Ls~N~L~~LP~~-l  260 (754)
T PRK15370        215 PENLQ--GNIKTLYANSNQ--------------------------LTSIPA---TL--PDTIQEMELSINRITELPER-L  260 (754)
T ss_pred             Chhhc--cCCCEEECCCCc--------------------------cccCCh---hh--hccccEEECcCCccCcCChh-H
Confidence            44332  345555555544                          433321   11  13466666666666554332 2


Q ss_pred             cCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCC
Q 047929          193 ANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE  272 (790)
Q Consensus       193 ~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  272 (790)
                      .  .+|+.|++++|.+.  .+|..+.  ++|+.|++++|.+.. +|..+.  +.|+.|++++|.+... |..+  .++|+
T Consensus       261 ~--s~L~~L~Ls~N~L~--~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~  328 (754)
T PRK15370        261 P--SALQSLDLFHNKIS--CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-PETL--PPGLK  328 (754)
T ss_pred             h--CCCCEEECcCCccC--ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-Cccc--cccce
Confidence            1  35666666666663  3555442  366677777766663 443332  3566667777666543 3222  24667


Q ss_pred             EEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEE
Q 047929          273 YLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTL  352 (790)
Q Consensus       273 ~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  352 (790)
                      .|++++|.+++ +|.. +  .++|+.|++++|.+...+..      +  .++|+.|++++|.++. +|..+.  ..|+.|
T Consensus       329 ~L~Ls~N~Lt~-LP~~-l--~~sL~~L~Ls~N~L~~LP~~------l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~L  393 (754)
T PRK15370        329 TLEAGENALTS-LPAS-L--PPELQVLDVSKNQITVLPET------L--PPTITTLDVSRNALTN-LPENLP--AALQIM  393 (754)
T ss_pred             eccccCCcccc-CChh-h--cCcccEEECCCCCCCcCChh------h--cCCcCEEECCCCcCCC-CCHhHH--HHHHHH
Confidence            77777776653 4432 2  25677777777766543221      1  2467777777777763 444333  357777


Q ss_pred             EccCcccCCCCCcCc----CCCCCCCEEECcCCcCC
Q 047929          353 ALSDNSVSGPLPPAS----GELSSLTYLDLSNNNLN  384 (790)
Q Consensus       353 ~L~~~~i~~~~~~~~----~~l~~L~~L~l~~n~~~  384 (790)
                      ++++|++. .+|..+    ..++.+..|++.+|++.
T Consensus       394 dLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        394 QASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            77777776 444433    34467778888888765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.68  E-value=1.7e-16  Score=177.57  Aligned_cols=77  Identities=18%  Similarity=0.399  Sum_probs=41.5

Q ss_pred             eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCcccc----CCCCCCEE
Q 047929          648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS----SLSFLNHL  723 (790)
Q Consensus       648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~----~l~~L~~L  723 (790)
                      |+.|++++|++. .+|..+  .++|++|+|++|.++ .+|..+.  .+|+.|++++|++. .+|..+.    .++.+..|
T Consensus       348 L~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L  420 (754)
T PRK15370        348 LQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRI  420 (754)
T ss_pred             ccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEE
Confidence            345555555554 344433  245666666666665 3444443  35666666666665 3444332    23556666


Q ss_pred             ECcCCccc
Q 047929          724 NLSDNKLV  731 (790)
Q Consensus       724 ~l~~n~l~  731 (790)
                      ++.+|++.
T Consensus       421 ~L~~Npls  428 (754)
T PRK15370        421 IVEYNPFS  428 (754)
T ss_pred             EeeCCCcc
Confidence            66666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.63  E-value=3.1e-17  Score=171.56  Aligned_cols=284  Identities=25%  Similarity=0.228  Sum_probs=125.9

Q ss_pred             EEcCCCCCC-ccccccCcCCCCCCEEeCCCCCCCCC---CcCccccCCCCCCEEeCCCCcccc------cCCCCCCCCCC
Q 047929           52 LNLERSELG-GKINPALVDLKHLNLLDLSGNDFQGI---QIPEYIGSMDNLRYLNLSGAGFAG------WIPHQLGNLSN  121 (790)
Q Consensus        52 L~L~~~~~~-~~~~~~l~~l~~L~~L~Ls~~~~~~~---~l~~~~~~l~~L~~L~Ls~~~~~~------~lp~~l~~l~~  121 (790)
                      |+|.++.+. ......+..+.+|++|+++++.+.+.   .+++.+...+.|++|+++++.+.+      .++..+.++++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            455555554 23334455556677777776665321   234445555666666666665541      12334455666


Q ss_pred             CcEEECcCCccccc-ccCcccc-CCCCCCcEEECCCCCCCCC--chhHHhhCCC-CCCCEEEccCccccccCcccCcCCC
Q 047929          122 LMHLDLSGSYYELR-VEDISWL-AGPSLLEHLDTSDVDLIKA--SDWLLVINSL-PSLKVLKLFSCKLHHFAPLASANFS  196 (790)
Q Consensus       122 L~~L~ls~~~~~~~-~~~~~~l-~~l~~L~~L~l~~~~~~~~--~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~  196 (790)
                      |++|++++|.+... ...+..+ .. ++|++|+++++.+...  ..+...+..+ ++|++|++++|.+......      
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------  155 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------  155 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------
Confidence            66666666554311 1111111 11 3344444444444322  1112233333 4444444444444311100      


Q ss_pred             CCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCC----CCccCCCCCCCcEEeCCCCcCCccc----cccccCC
Q 047929          197 SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGP----IPDGFKNLTSLRYLDLSYNQFNSTI----SDCFSNF  268 (790)
Q Consensus       197 ~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l  268 (790)
                                     .++..+..+.+|++|++++|.+.+.    ++..+..+++|++|++++|.+.+..    ...+..+
T Consensus       156 ---------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~  220 (319)
T cd00116         156 ---------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL  220 (319)
T ss_pred             ---------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence                           1122233344455555555544321    1122333345555555555443221    2233445


Q ss_pred             CCCCEEEccCcccccccCccc----ccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccc----cc
Q 047929          269 DDLEYLSLGYNRLQGTISSIG----LENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQ----LT  340 (790)
Q Consensus       269 ~~L~~L~l~~~~l~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~  340 (790)
                      ++|++|++++|.+.+......    ....+.|++|++++|.++........ ......++|+.+++++|.+...    ..
T Consensus       221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~~~~~~~~L~~l~l~~N~l~~~~~~~~~  299 (319)
T cd00116         221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA-EVLAEKESLLELDLRGNKFGEEGAQLLA  299 (319)
T ss_pred             CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH-HHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence            555555555555442111110    11235566666666655422111110 0223345666677777666643    22


Q ss_pred             hhhccC-CCCcEEEccCcc
Q 047929          341 NQLGLF-KNLHTLALSDNS  358 (790)
Q Consensus       341 ~~l~~l-~~L~~L~L~~~~  358 (790)
                      ..+... +.++.+++.++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         300 ESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHhhcCCchhhcccCCCC
Confidence            233333 567777776654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.62  E-value=1e-16  Score=167.70  Aligned_cols=264  Identities=22%  Similarity=0.205  Sum_probs=142.3

Q ss_pred             EEeCCCCCCCCCCcCccccCCCCCCEEeCCCCccccc----CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcE
Q 047929           75 LLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGW----IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEH  150 (790)
Q Consensus        75 ~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~  150 (790)
                      .|+|.++.+.+......+..+.+|+.|+++++.++..    ++..+...++|++++++++.+.......           
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~-----------   70 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL-----------   70 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHH-----------
Confidence            4677777777555667777788899999999887442    4555667777888888776533100000           


Q ss_pred             EECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCC---CCCCEEECCCCCCCCCCc---chhccCC-CCC
Q 047929          151 LDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANF---SSLNALDLSGNLFGKTSI---PSWVFGL-SDL  223 (790)
Q Consensus       151 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~L~~~~l~~~~l---p~~l~~l-~~L  223 (790)
                                 ......+..+++|+.|++++|.+....+..+..+   ++|++|++++|.+.+...   ...+..+ ++|
T Consensus        71 -----------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L  139 (319)
T cd00116          71 -----------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL  139 (319)
T ss_pred             -----------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCc
Confidence                       1122345556666666666666654333333333   337777777776643111   2233445 677


Q ss_pred             cEEEccCCcCCCC----CCccCCCCCCCcEEeCCCCcCCcc----ccccccCCCCCCEEEccCcccccccCc---ccccC
Q 047929          224 VFLDLSSNIFRGP----IPDGFKNLTSLRYLDLSYNQFNST----ISDCFSNFDDLEYLSLGYNRLQGTISS---IGLEN  292 (790)
Q Consensus       224 ~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~---~~l~~  292 (790)
                      +.|++++|.+.+.    ++..+..+++|++|++++|.+.+.    .+..+..+++|++|++++|.+.+....   ..+..
T Consensus       140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~  219 (319)
T cd00116         140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS  219 (319)
T ss_pred             eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence            7777777776631    233455666777777777776632    222344456777777777765422111   11445


Q ss_pred             CCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCcccc----ccchhhccCCCCcEEEccCcccC
Q 047929          293 LTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISG----QLTNQLGLFKNLHTLALSDNSVS  360 (790)
Q Consensus       293 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~~~i~  360 (790)
                      +++|++|++++|.+................+.|++|++++|.++.    .+...+..+++|+.+++++|.+.
T Consensus       220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            566666666666554311110000000012455555555555541    11222333445555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=9e-18  Score=143.83  Aligned_cols=184  Identities=27%  Similarity=0.541  Sum_probs=142.8

Q ss_pred             CCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCc
Q 047929          502 GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQ  581 (790)
Q Consensus       502 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~  581 (790)
                      ..+.++++|.+++|+++. .|..+..+.+|+.|++++|++. .+|..+. .++.|+.|+++-|++. ..|.+|+.+|.|+
T Consensus        30 f~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             cchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhh
Confidence            346778888888888884 4456778888888888888887 7888775 7899999999999887 7899999999999


Q ss_pred             EEEccCCcccc-cCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC
Q 047929          582 ILDVAYNRLSG-SVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG  660 (790)
Q Consensus       582 ~L~ls~n~l~~-~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  660 (790)
                      .||+.+|++.+ .+|..|-.++.                                            |+.|+|+.|.+. 
T Consensus       106 vldltynnl~e~~lpgnff~m~t--------------------------------------------lralyl~dndfe-  140 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTT--------------------------------------------LRALYLGDNDFE-  140 (264)
T ss_pred             hhhccccccccccCCcchhHHHH--------------------------------------------HHHHHhcCCCcc-
Confidence            99999998864 45554443333                                            346778888887 


Q ss_pred             CCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCC---CCCEEECcCCcccccCCC
Q 047929          661 EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS---FLNHLNLSDNKLVGKIPS  736 (790)
Q Consensus       661 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~---~L~~L~l~~n~l~~~~p~  736 (790)
                      .+|..++++++|+.|.+++|.+. .+|..++.++.|++|++.+|+++ .+|..++.+.   +=+.+.+.+||....|.+
T Consensus       141 ~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  141 ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            78888889999999999999887 78888888999999999999988 5666666553   234566777877655543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=3.9e-16  Score=133.88  Aligned_cols=166  Identities=27%  Similarity=0.529  Sum_probs=141.2

Q ss_pred             ccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccc
Q 047929          525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAM  604 (790)
Q Consensus       525 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L  604 (790)
                      +-.+..++.|.+++|+++ .+|..+. .+.+|+.|++++|+++ ..|..+..++.|+.|+++-|++. .+|..|++++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            334567788899999988 6676675 6889999999999998 56788899999999999988876 778888777665


Q ss_pred             cccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC-CCCcccccCCCCCEEeCCCCcCC
Q 047929          605 ATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG-EIPMEVTNLKGLQSLNLSHNSFI  683 (790)
Q Consensus       605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~  683 (790)
                                                                  +.|||++|++.. .+|..|..++.|+.|++++|.+.
T Consensus       105 --------------------------------------------evldltynnl~e~~lpgnff~m~tlralyl~dndfe  140 (264)
T KOG0617|consen  105 --------------------------------------------EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE  140 (264)
T ss_pred             --------------------------------------------hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence                                                        478999998864 67888889999999999999997


Q ss_pred             cCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcC
Q 047929          684 GKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQL  740 (790)
Q Consensus       684 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~  740 (790)
                       .+|...+.+++||.|.+.+|.+. .+|..++.++.|++|.+.+|++.-.+|+.+++
T Consensus       141 -~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l  195 (264)
T KOG0617|consen  141 -ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL  195 (264)
T ss_pred             -cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence             88888999999999999999998 78999999999999999999998777766554

>PLN03150 hypothetical protein; Provisional

Probab=99.27  E-value=2.2e-11  Score=136.49  Aligned_cols=126  Identities=36%  Similarity=0.582  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCc----ccCceeecC--CC--CcEEEEEcCCCCCCccccccCcCCCCCCE
Q 047929            4 LESERVALIKLKQDFKDPSNHLASWIGDVDCC----EWGGVVCNN--IT--GHVLELNLERSELGGKINPALVDLKHLNL   75 (790)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~----~~~~~~c~~--~~--~~v~~L~L~~~~~~~~~~~~l~~l~~L~~   75 (790)
                      ...|..||.++|+++.++..  .+|.. ..|+    .|.|+.|..  ..  .+|+.|+|+++.+.+.+|..+.++++|+.
T Consensus       370 ~~~~~~aL~~~k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~  446 (623)
T PLN03150        370 LLEEVSALQTLKSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS  446 (623)
T ss_pred             CchHHHHHHHHHHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence            34688999999999976542  48954 3342    799999952  11  35999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCccc
Q 047929           76 LDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYE  133 (790)
Q Consensus        76 L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~  133 (790)
                      |+|++|.+.+. +|..++.+++|++|+|++|++++.+|..++++++|++|++++|.+.
T Consensus       447 L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        447 INLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             EECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence            99999999886 8999999999999999999999999999999999999999999754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=5.9e-13  Score=135.96  Aligned_cols=192  Identities=29%  Similarity=0.437  Sum_probs=159.9

Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEE
Q 047929          504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQIL  583 (790)
Q Consensus       504 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  583 (790)
                      +.--...+++.|++. ..|..+..+-.|+.+.++.|.+. .+|..+. .+..|++||++.|+++ ..|..+|.|| |+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            455567889999988 56777777888999999999887 7888876 7899999999999998 6788888887 9999


Q ss_pred             EccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCC
Q 047929          584 DVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIP  663 (790)
Q Consensus       584 ~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  663 (790)
                      -+++|+++ .+|+.++.+..                                            |..||.++|.+. .+|
T Consensus       149 i~sNNkl~-~lp~~ig~~~t--------------------------------------------l~~ld~s~nei~-slp  182 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPT--------------------------------------------LAHLDVSKNEIQ-SLP  182 (722)
T ss_pred             EEecCccc-cCCcccccchh--------------------------------------------HHHhhhhhhhhh-hch
Confidence            99999987 77776664333                                            357899999998 788


Q ss_pred             cccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCC----Cc
Q 047929          664 MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS----TQ  739 (790)
Q Consensus       664 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~----~~  739 (790)
                      ..++++.+|+.|.++.|.+. .+|+.+..| .|..||+++|++. .+|-.|..|..|++|.|.+||+. ++|..    |.
T Consensus       183 sql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGk  258 (722)
T KOG0532|consen  183 SQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGK  258 (722)
T ss_pred             HHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccc
Confidence            88999999999999999998 667777755 8999999999999 79999999999999999999997 45532    55


Q ss_pred             CCccCCccccC
Q 047929          740 LQSFGASSITG  750 (790)
Q Consensus       740 ~~sl~~l~~~~  750 (790)
                      ..-|+.|++.-
T Consensus       259 VHIFKyL~~qA  269 (722)
T KOG0532|consen  259 VHIFKYLSTQA  269 (722)
T ss_pred             eeeeeeecchh
Confidence            66677887776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=8.2e-13  Score=134.93  Aligned_cols=196  Identities=27%  Similarity=0.438  Sum_probs=163.6

Q ss_pred             CCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcE
Q 047929          479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRI  558 (790)
Q Consensus       479 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  558 (790)
                      .+..-...+++.|++. .+|..+..+..|+.+.++.|.+. ..|..+..+..|+.++++.|++. .+|..++  .--|+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence            4556677899999998 68888888999999999999988 56778889999999999999998 7888775  345999


Q ss_pred             EEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccch
Q 047929          559 LNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFM  638 (790)
Q Consensus       559 L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  638 (790)
                      |-+++|+++ ..|+.++..+.|..||.++|.+. .+|..+..+.+|                                  
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl----------------------------------  191 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL----------------------------------  191 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH----------------------------------
Confidence            999999998 67888888999999999999987 677777776665                                  


Q ss_pred             hhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCcccc---
Q 047929          639 VEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS---  715 (790)
Q Consensus       639 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~---  715 (790)
                                +.|.+..|.+. .+|+.+..| .|..||++.|+++ .+|-.|..++.|++|-|.+|.+. +.|..+.   
T Consensus       192 ----------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kG  257 (722)
T KOG0532|consen  192 ----------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKG  257 (722)
T ss_pred             ----------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhcc
Confidence                      45777788887 677777754 5899999999998 89999999999999999999998 6776553   


Q ss_pred             CCCCCCEEECcCCc
Q 047929          716 SLSFLNHLNLSDNK  729 (790)
Q Consensus       716 ~l~~L~~L~l~~n~  729 (790)
                      ..+=-|+|++.-|+
T Consensus       258 kVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  258 KVHIFKYLSTQACQ  271 (722)
T ss_pred             ceeeeeeecchhcc
Confidence            34446889998885

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=2.8e-12  Score=123.71  Aligned_cols=240  Identities=20%  Similarity=0.204  Sum_probs=125.8

Q ss_pred             CCcEEEEEcCCCCCCc----cccccCcCCCCCCEEeCCCCC---CCCCCcC-------ccccCCCCCCEEeCCCCccccc
Q 047929           46 TGHVLELNLERSELGG----KINPALVDLKHLNLLDLSGND---FQGIQIP-------EYIGSMDNLRYLNLSGAGFAGW  111 (790)
Q Consensus        46 ~~~v~~L~L~~~~~~~----~~~~~l~~l~~L~~L~Ls~~~---~~~~~l~-------~~~~~l~~L~~L~Ls~~~~~~~  111 (790)
                      ...+++|+|+|+.+..    .+...+.+.+.|+..++|.--   ... .+|       +++-.+++|++||||.|-+...
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~-Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKD-EIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHH-HHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            3567888888887642    234566677788888777531   111 123       3334556788888887766544


Q ss_pred             CCCC----CCCCCCCcEEECcCCccccccc-----------CccccCCCCCCcEEECCCCCCCCC--chhHHhhCCCCCC
Q 047929          112 IPHQ----LGNLSNLMHLDLSGSYYELRVE-----------DISWLAGPSLLEHLDTSDVDLIKA--SDWLLVINSLPSL  174 (790)
Q Consensus       112 lp~~----l~~l~~L~~L~ls~~~~~~~~~-----------~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~l~~L  174 (790)
                      .+..    +.++..|++|.+.+|.+.....           .-...+.-+.|+.+...+|+....  ..+...++..+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            4433    2456777777777775432111           112234455566666666665554  4445555555666


Q ss_pred             CEEEccCcccccc----CcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEE
Q 047929          175 KVLKLFSCKLHHF----APLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYL  250 (790)
Q Consensus       175 ~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  250 (790)
                      +++.+..|.|...    ...++.++++|++|||..|.++... .                    ..+...+..+++|+.|
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg-s--------------------~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG-S--------------------VALAKALSSWPHLREL  246 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH-H--------------------HHHHHHhcccchheee
Confidence            6666555554432    1233445555555555555442200 0                    0122334444555555


Q ss_pred             eCCCCcCCccccccc-----cCCCCCCEEEccCcccccccC---cccccCCCCCCEEEccCCCCC
Q 047929          251 DLSYNQFNSTISDCF-----SNFDDLEYLSLGYNRLQGTIS---SIGLENLTFIKTLDLSFNELG  307 (790)
Q Consensus       251 ~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~l~~~~~---~~~l~~l~~L~~L~l~~~~~~  307 (790)
                      ++++|.+......++     ...|.|++|.+.+|.++..-.   ...+...+.|+.|++++|.+.
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            555555543322211     234566666666665542111   112344666777777777764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.1e-11  Score=122.97  Aligned_cols=164  Identities=27%  Similarity=0.270  Sum_probs=73.7

Q ss_pred             CCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCC--CCCCCCCCCcEEECcCCcccccccCccccCCCC
Q 047929           69 DLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIP--HQLGNLSNLMHLDLSGSYYELRVEDISWLAGPS  146 (790)
Q Consensus        69 ~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp--~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~  146 (790)
                      +++.|+.+.|.++.......-+....|++++.||||.|-+..+.|  .-...|++|+.|+++.|.+......... ..++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLLS  197 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhhh
Confidence            455666666665555422111344556666666666665544322  2235566666666666654332221111 1344


Q ss_pred             CCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEE
Q 047929          147 LLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL  226 (790)
Q Consensus       147 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L  226 (790)
                      .|+.|.++.|.++ -.++...+..+|.|+.|.+..|....+......-+..|+.|||++|.+.+...-...+.++.|+.|
T Consensus       198 ~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            4555555555544 222233444455555555555542222222333334444555555444221111223344444444


Q ss_pred             EccCCcCC
Q 047929          227 DLSSNIFR  234 (790)
Q Consensus       227 ~l~~~~~~  234 (790)
                      +++.+.+.
T Consensus       277 nls~tgi~  284 (505)
T KOG3207|consen  277 NLSSTGIA  284 (505)
T ss_pred             hccccCcc
Confidence            44444443

>PLN03150 hypothetical protein; Provisional

Probab=99.11  E-value=1.4e-10  Score=130.03  Aligned_cols=116  Identities=38%  Similarity=0.669  Sum_probs=105.1

Q ss_pred             ceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECc
Q 047929          647 LVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLS  726 (790)
Q Consensus       647 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~  726 (790)
                      .++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|++.+.+|+.++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCC--cCCccCCccccCC-cccCCCC-CCCC
Q 047929          727 DNKLVGKIPSST--QLQSFGASSITGN-DLCGAPL-SNCT  762 (790)
Q Consensus       727 ~n~l~~~~p~~~--~~~sl~~l~~~~n-~l~~~~~-~~c~  762 (790)
                      +|++.+.+|...  .+..+..+.+.+| .+|+.|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999763  2345667889999 8999764 4675

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.04  E-value=3.6e-11  Score=116.23  Aligned_cols=260  Identities=24%  Similarity=0.237  Sum_probs=122.3

Q ss_pred             cccCcCCCCCCEEeCCCCCCCCC---CcCccccCCCCCCEEeCCCCc---ccccCCC-------CCCCCCCCcEEECcCC
Q 047929           64 NPALVDLKHLNLLDLSGNDFQGI---QIPEYIGSMDNLRYLNLSGAG---FAGWIPH-------QLGNLSNLMHLDLSGS  130 (790)
Q Consensus        64 ~~~l~~l~~L~~L~Ls~~~~~~~---~l~~~~~~l~~L~~L~Ls~~~---~~~~lp~-------~l~~l~~L~~L~ls~~  130 (790)
                      -+.+-....++.++||+|.+...   .+...+.+.++|+..++|+--   ....+|.       ++-.+++|++||||.|
T Consensus        23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            35566777888888888876422   133445566677777777642   1112332       3345566666666666


Q ss_pred             cccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCC
Q 047929          131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGK  210 (790)
Q Consensus       131 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~  210 (790)
                      .+....                        .+.+...+.++..|++|.+.+|.+.......++.  .|..|.        
T Consensus       103 A~G~~g------------------------~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--------  148 (382)
T KOG1909|consen  103 AFGPKG------------------------IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--------  148 (382)
T ss_pred             ccCccc------------------------hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--------
Confidence            432111                        1333445566667777777776665443332211  000000        


Q ss_pred             CCcchhccCCCCCcEEEccCCcCCCC----CCccCCCCCCCcEEeCCCCcCCcc----ccccccCCCCCCEEEccCcccc
Q 047929          211 TSIPSWVFGLSDLVFLDLSSNIFRGP----IPDGFKNLTSLRYLDLSYNQFNST----ISDCFSNFDDLEYLSLGYNRLQ  282 (790)
Q Consensus       211 ~~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~  282 (790)
                        ....+..-++|+++....|++...    +...|...+.|+.+.+..|.|...    ....+..+++|++|+|.+|.++
T Consensus       149 --~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  149 --VNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             --HHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence              000011223444444444443321    122234445555555555544321    1234455555555555555443


Q ss_pred             cccC---cccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccc----cchhhccCCCCcEEEcc
Q 047929          283 GTIS---SIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQ----LTNQLGLFKNLHTLALS  355 (790)
Q Consensus       283 ~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~  355 (790)
                      ....   ...+..+++|+++++++|.+.......+.-......+.|+++.+.+|.++..    +...+...+.|.+|+|+
T Consensus       227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn  306 (382)
T KOG1909|consen  227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN  306 (382)
T ss_pred             hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence            1110   1124445566666666665554443222111112245666666666655432    12223334556666666


Q ss_pred             Cccc
Q 047929          356 DNSV  359 (790)
Q Consensus       356 ~~~i  359 (790)
                      +|++
T Consensus       307 gN~l  310 (382)
T KOG1909|consen  307 GNRL  310 (382)
T ss_pred             cccc
Confidence            6655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=1.1e-10  Score=133.34  Aligned_cols=180  Identities=25%  Similarity=0.272  Sum_probs=115.1

Q ss_pred             CcEEEEEcCCCC--CCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcE
Q 047929           47 GHVLELNLERSE--LGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH  124 (790)
Q Consensus        47 ~~v~~L~L~~~~--~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~  124 (790)
                      +.++.|-+.++.  +....++.|..+++|++|||++|.--+ .+|+.++.|.+||+|+++++.+.. +|..+++|+.|.|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIY  622 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhhe
Confidence            467888887775  443334557889999999999865333 599999999999999999999986 9999999999999


Q ss_pred             EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCC----E
Q 047929          125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLN----A  200 (790)
Q Consensus       125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~  200 (790)
                      |++..+......  ......+++|++|.+.......+......+.++.+|+.+....... .+ ...+..+..|+    .
T Consensus       623 Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~-~e~l~~~~~L~~~~~~  698 (889)
T KOG4658|consen  623 LNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LL-LEDLLGMTRLRSLLQS  698 (889)
T ss_pred             eccccccccccc--cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-Hh-HhhhhhhHHHHHHhHh
Confidence            999876522222  3334458888888888777555555455566666666666644443 11 11112222222    2


Q ss_pred             EECCCCCCCCCCcchhccCCCCCcEEEccCCcCC
Q 047929          201 LDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFR  234 (790)
Q Consensus       201 L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~  234 (790)
                      +.+.++..  ...+..+..+.+|+.|.+.+|.+.
T Consensus       699 l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  699 LSIEGCSK--RTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hhhccccc--ceeecccccccCcceEEEEcCCCc
Confidence            22222221  233444555666666666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=5e-11  Score=118.43  Aligned_cols=221  Identities=22%  Similarity=0.171  Sum_probs=124.7

Q ss_pred             CCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcc-cCcCC
Q 047929          117 GNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPL-ASANF  195 (790)
Q Consensus       117 ~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l  195 (790)
                      .++.+|+.+.|.++.+...+.. +....+++++.||++.|-+..-..+...+..+|+|+.|+++.|.+...... .-..+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            3566666666666654433332 455566666666666666666666666777888888888888876544322 22356


Q ss_pred             CCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccc-cccccCCCCCCEE
Q 047929          196 SSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTI-SDCFSNFDDLEYL  274 (790)
Q Consensus       196 ~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L  274 (790)
                      ++|+.|.+++|.++-..+-..+..+++|+.|++..|...........-+..|+.|+|++|.+.... ....+.++.|+.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            777778888877754333333445677777777777432222233344566777777777654321 1234455666666


Q ss_pred             EccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccc-cchhhccCCCCcEEE
Q 047929          275 SLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQ-LTNQLGLFKNLHTLA  353 (790)
Q Consensus       275 ~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~  353 (790)
                      +++.+.+.. +..                       ++.....-...+++|+.|++..|++... ....+..+++|+.|.
T Consensus       277 nls~tgi~s-i~~-----------------------~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  277 NLSSTGIAS-IAE-----------------------PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             hccccCcch-hcC-----------------------CCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence            666555441 110                       0000000123455677777777766421 112344567777777


Q ss_pred             ccCcccCCC
Q 047929          354 LSDNSVSGP  362 (790)
Q Consensus       354 L~~~~i~~~  362 (790)
                      +..|.+...
T Consensus       333 ~~~n~ln~e  341 (505)
T KOG3207|consen  333 ITLNYLNKE  341 (505)
T ss_pred             ccccccccc
Confidence            777776643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.98  E-value=2.9e-10  Score=103.57  Aligned_cols=125  Identities=31%  Similarity=0.378  Sum_probs=41.8

Q ss_pred             cEEEEEcCCCCCCccccccCc-CCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCC-CCCCCCcEE
Q 047929           48 HVLELNLERSELGGKINPALV-DLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQL-GNLSNLMHL  125 (790)
Q Consensus        48 ~v~~L~L~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l-~~l~~L~~L  125 (790)
                      ++++|+|.++.|+..  +.++ .+.+|++|+|++|.+...   +.+..+++|+.|++++|.++. +...+ ..+++|++|
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence            567777777776532  3344 467777777777777733   346667777777777777776 43333 356777777


Q ss_pred             ECcCCcccccccCccccCCCCCCcEEECCCCCCCCCch-hHHhhCCCCCCCEEEc
Q 047929          126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASD-WLLVINSLPSLKVLKL  179 (790)
Q Consensus       126 ~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~l  179 (790)
                      ++++|++... .++..++.+++|+.|++.+|++..... ....+..+|+|+.|+-
T Consensus        94 ~L~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   94 YLSNNKISDL-NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TTS---SC-CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             ECcCCcCCCh-HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            7777766543 234555556666666666666554422 2334455555555553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=1.1e-10  Score=109.99  Aligned_cols=131  Identities=24%  Similarity=0.288  Sum_probs=95.2

Q ss_pred             CCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeee
Q 047929          554 SRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLV  633 (790)
Q Consensus       554 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  633 (790)
                      +.|+++|+++|.++ .+.+.+.-.|.++.|++|+|.+...-  .++.                                 
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~---------------------------------  327 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAE---------------------------------  327 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhh---------------------------------
Confidence            46888888888887 45566777888888888888876211  1222                                 


Q ss_pred             eccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcccc-Cc
Q 047929          634 MKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI-PQ  712 (790)
Q Consensus       634 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~  712 (790)
                                 +.+|+.|||++|.++ .+...=..+.+.++|.|++|.+...  .+++.+-+|..||+++|+|.... -.
T Consensus       328 -----------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~  393 (490)
T KOG1259|consen  328 -----------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVN  393 (490)
T ss_pred             -----------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhc
Confidence                       334568888888876 3333335678888899999988633  45778889999999999887532 35


Q ss_pred             cccCCCCCCEEECcCCcccccC
Q 047929          713 SMSSLSFLNHLNLSDNKLVGKI  734 (790)
Q Consensus       713 ~l~~l~~L~~L~l~~n~l~~~~  734 (790)
                      .+++++.|+.+.+.+||+.+.+
T Consensus       394 ~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  394 HIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             ccccccHHHHHhhcCCCccccc
Confidence            6788899999999999887543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.93  E-value=1.3e-09  Score=117.28  Aligned_cols=103  Identities=35%  Similarity=0.610  Sum_probs=46.8

Q ss_pred             CCCcEEEccCCcccccCCcCCCCCC-CCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEE
Q 047929          481 PDLRVLNLGNNKFTGSIPISMGTLT-SLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRIL  559 (790)
Q Consensus       481 ~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  559 (790)
                      +.++.|++.+|.++. ++....... +|+.|++++|.+..+ +..+..+++|+.|++++|++. .+|.... ..+.|+.|
T Consensus       116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNNL  191 (394)
T ss_pred             cceeEEecCCccccc-Cccccccchhhcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhh-hhhhhhhe
Confidence            455566666665552 332333332 555555555555532 133444555555555555554 3332221 24445555


Q ss_pred             EcCCCcccccCCccccCCCCCcEEEccCC
Q 047929          560 NLRSNKLHGIFPIQICHLSSLQILDVAYN  588 (790)
Q Consensus       560 ~L~~n~~~~~~~~~~~~l~~L~~L~ls~n  588 (790)
                      ++++|++.. +|.....+..|+++.+++|
T Consensus       192 ~ls~N~i~~-l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         192 DLSGNKISD-LPPEIELLSALEELDLSNN  219 (394)
T ss_pred             eccCCcccc-CchhhhhhhhhhhhhhcCC
Confidence            555555542 2222222333444444444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=8.6e-10  Score=126.22  Aligned_cols=228  Identities=21%  Similarity=0.204  Sum_probs=139.4

Q ss_pred             CCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEE
Q 047929           46 TGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL  125 (790)
Q Consensus        46 ~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L  125 (790)
                      .+++|+|||++|.--+.+|..++++-|||+|+++++.+.  .+|..+.++..|.+|++..+.....+|..+..|++||+|
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence            478999999998656799999999999999999999999  689999999999999999988666567767779999999


Q ss_pred             ECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCC----EEEccCccccccCcccCcCCCCCCEE
Q 047929          126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLK----VLKLFSCKLHHFAPLASANFSSLNAL  201 (790)
Q Consensus       126 ~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L  201 (790)
                      .+...........+..+.++.+|+.+.+.....    .+...+.....|+    .+.+.++ ........+..+.+|+.|
T Consensus       648 ~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~----~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L  722 (889)
T KOG4658|consen  648 RLPRSALSNDKLLLKELENLEHLENLSITISSV----LLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEEL  722 (889)
T ss_pred             EeeccccccchhhHHhhhcccchhhheeecchh----HhHhhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceE
Confidence            998765444455556666677777666643333    1111223333333    2222221 112223455667777777


Q ss_pred             ECCCCCCCCCCcchhccC------CCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEE
Q 047929          202 DLSGNLFGKTSIPSWVFG------LSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLS  275 (790)
Q Consensus       202 ~L~~~~l~~~~lp~~l~~------l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  275 (790)
                      .+.++.+.+.. ..+...      ++++..+...+|... ..+.+....++|+.|.+..+.....+......+..+..+.
T Consensus       723 ~i~~~~~~e~~-~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i  800 (889)
T KOG4658|consen  723 SILDCGISEIV-IEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELI  800 (889)
T ss_pred             EEEcCCCchhh-cccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEE
Confidence            77777653211 111110      122222222233211 1222233456777777777665544444444444444444


Q ss_pred             ccCcccc
Q 047929          276 LGYNRLQ  282 (790)
Q Consensus       276 l~~~~l~  282 (790)
                      +..+.+.
T Consensus       801 ~~f~~~~  807 (889)
T KOG4658|consen  801 LPFNKLE  807 (889)
T ss_pred             ecccccc
Confidence            4444433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.89  E-value=1.5e-09  Score=98.81  Aligned_cols=106  Identities=30%  Similarity=0.353  Sum_probs=25.4

Q ss_pred             CCCEEECCCCCCCCCCcchhcc-CCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEE
Q 047929          197 SLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLS  275 (790)
Q Consensus       197 ~L~~L~L~~~~l~~~~lp~~l~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  275 (790)
                      +++.|+|+++.++.  +. .+. .+.+|+.|++++|.+.. +. .+..+++|++|++++|.++...+.....+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~--Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST--IE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc--cc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            44555555555422  11 232 34555555555555553 22 255555566666666655543221112355566666


Q ss_pred             ccCcccccccCcccccCCCCCCEEEccCCCCC
Q 047929          276 LGYNRLQGTISSIGLENLTFIKTLDLSFNELG  307 (790)
Q Consensus       276 l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~  307 (790)
                      +++|++...-.-..+..+++|+.|++.+|++.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            66555542222222444555555555555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=4.1e-10  Score=106.18  Aligned_cols=132  Identities=23%  Similarity=0.245  Sum_probs=65.4

Q ss_pred             CCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEe
Q 047929          172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD  251 (790)
Q Consensus       172 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  251 (790)
                      ..|+++++++|.|+.+.. +..-.+.++.|++++|.+..  +- .+..+++|+.||+++|.+.. +..+-.++-++++|.
T Consensus       284 q~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~--v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRT--VQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchhhhhh-hhhhccceeEEeccccceee--eh-hhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence            345555555555554422 23334555555555555522  11 24445555555555555442 222334455555555


Q ss_pred             CCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCc
Q 047929          252 LSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDI  310 (790)
Q Consensus       252 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  310 (790)
                      +++|.+...  ..+.++-+|..|++++|++...-....++++|.|+.+.+.+|++...+
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            555555432  334455555555666555543222233556666666666666654433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.83  E-value=4.5e-09  Score=113.04  Aligned_cols=196  Identities=36%  Similarity=0.432  Sum_probs=110.1

Q ss_pred             EEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCC-CCcEEECcCCcccccccCccccCCCCCCcEEEC
Q 047929           75 LLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLS-NLMHLDLSGSYYELRVEDISWLAGPSLLEHLDT  153 (790)
Q Consensus        75 ~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~-~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l  153 (790)
                      .++++.+.+..  ....+..++.++.|++.++.++. +|.....+. +|+.|++++|.+...+   ..++.++       
T Consensus        97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~---~~~~~l~-------  163 (394)
T COG4886          97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLP---SPLRNLP-------  163 (394)
T ss_pred             eeecccccccc--CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhhh---hhhhccc-------
Confidence            57777777642  23445567889999999999887 777777774 8999999988755332   2234444       


Q ss_pred             CCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcC
Q 047929          154 SDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIF  233 (790)
Q Consensus       154 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~  233 (790)
                                         +|+.|+++.|.+.+++... ...+.|+.|++++|.+  ..+|..+..+..|++|.+++|.+
T Consensus       164 -------------------~L~~L~l~~N~l~~l~~~~-~~~~~L~~L~ls~N~i--~~l~~~~~~~~~L~~l~~~~N~~  221 (394)
T COG4886         164 -------------------NLKNLDLSFNDLSDLPKLL-SNLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSI  221 (394)
T ss_pred             -------------------cccccccCCchhhhhhhhh-hhhhhhhheeccCCcc--ccCchhhhhhhhhhhhhhcCCcc
Confidence                               4444444444444443321 1345555555555555  23444433444455555555543


Q ss_pred             CCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCc
Q 047929          234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDI  310 (790)
Q Consensus       234 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  310 (790)
                      . ..+..+.++.++..+.+.+|++... +..++.+++++.|++++|.+. .++.  +..+.+++.|+++++.+....
T Consensus       222 ~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         222 I-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             e-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccc-cccc--ccccCccCEEeccCccccccc
Confidence            3 2333455555555555555554321 344555555666666666554 3333  455556666666665554433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=5.2e-09  Score=78.11  Aligned_cols=61  Identities=38%  Similarity=0.599  Sum_probs=46.1

Q ss_pred             CCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcc
Q 047929          670 KGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKL  730 (790)
Q Consensus       670 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  730 (790)
                      ++|++|++++|+++...++.|.++++|++|++++|.+....|..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4567777777777766666777778888888888888777777778888888888887764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.59  E-value=6.2e-08  Score=72.25  Aligned_cols=60  Identities=40%  Similarity=0.603  Sum_probs=38.6

Q ss_pred             CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCc
Q 047929          481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE  540 (790)
Q Consensus       481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~  540 (790)
                      |+|++|++++|+++...+..|..+++|++|++++|++..+.+..|.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            355666666666665555566666666666666666666666666666666666666664

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.52  E-value=1e-08  Score=110.18  Aligned_cols=197  Identities=29%  Similarity=0.305  Sum_probs=112.5

Q ss_pred             cCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCC
Q 047929           68 VDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSL  147 (790)
Q Consensus        68 ~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~  147 (790)
                      ..+..++.+++..|.+..  .-..++.+.+|.+|++.+|.+.. +...+..+++|++|++++|.|.    .+..+..++.
T Consensus        69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~----~i~~l~~l~~  141 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT----KLEGLSTLTL  141 (414)
T ss_pred             HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc----cccchhhccc
Confidence            355666666677776663  23446677778888888887776 3333667777888888777644    2233444555


Q ss_pred             CcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCc-ccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEE
Q 047929          148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAP-LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL  226 (790)
Q Consensus       148 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L  226 (790)
                      |+.|++.+|.+....    .+..++.|+.+++++|.+..+.. . ...+.+++.+.+.+|.+..   ..++..+..+..+
T Consensus       142 L~~L~l~~N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~---i~~~~~~~~l~~~  213 (414)
T KOG0531|consen  142 LKELNLSGNLISDIS----GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE---IEGLDLLKKLVLL  213 (414)
T ss_pred             hhhheeccCcchhcc----CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc---ccchHHHHHHHHh
Confidence            666666666666554    23346666666666666666554 2 4555666666666666532   2233334444445


Q ss_pred             EccCCcCCCCCCccCCCCCC--CcEEeCCCCcCCccccccccCCCCCCEEEccCcccc
Q 047929          227 DLSSNIFRGPIPDGFKNLTS--LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ  282 (790)
Q Consensus       227 ~l~~~~~~~~~p~~~~~l~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  282 (790)
                      ++..|.+...-+  +..+..  |+.+++.+|.+... +..+..+..+..|++.++.+.
T Consensus       214 ~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  214 SLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             hcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccc
Confidence            666665553221  222232  66666666665532 134445555666666655543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=2.4e-09  Score=101.19  Aligned_cols=253  Identities=23%  Similarity=0.219  Sum_probs=164.8

Q ss_pred             ccCceeecCCCCcEEEEEcCCCCCCccccccCcCC--CCCCEEeCCCCCCCCCCcCccccCC-CCCCEEeCCCCccccc-
Q 047929           36 EWGGVVCNNITGHVLELNLERSELGGKINPALVDL--KHLNLLDLSGNDFQGIQIPEYIGSM-DNLRYLNLSGAGFAGW-  111 (790)
Q Consensus        36 ~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l--~~L~~L~Ls~~~~~~~~l~~~~~~l-~~L~~L~Ls~~~~~~~-  111 (790)
                      +|++...+  ..-=+.+|+.+-.+.   |.++.++  +.+.++.+......+..+.+.+.-. +.|++||||+..++.. 
T Consensus       127 Rfyr~~~d--e~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~st  201 (419)
T KOG2120|consen  127 RFYRLASD--ESLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVST  201 (419)
T ss_pred             HHhhcccc--ccceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHH
Confidence            56666554  334467788777654   3333333  3455566655444433344444333 3588999988887642 


Q ss_pred             CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccC-cc
Q 047929          112 IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFA-PL  190 (790)
Q Consensus       112 lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~  190 (790)
                      +-.-+..|.+|+.|.+.+++  ..++....+++-.+|+.|+++.+.-....+....+.+|+.|.+|++++|...... ..
T Consensus       202 l~~iLs~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv  279 (419)
T KOG2120|consen  202 LHGILSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV  279 (419)
T ss_pred             HHHHHHHHHhhhhccccccc--cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH
Confidence            33345778888888888775  4455556678888899999988887777777778999999999999999865432 22


Q ss_pred             cCcC-CCCCCEEECCCCCC--CCCCcchhccCCCCCcEEEccCCc-CCCCCCccCCCCCCCcEEeCCCCcCCccccc---
Q 047929          191 ASAN-FSSLNALDLSGNLF--GKTSIPSWVFGLSDLVFLDLSSNI-FRGPIPDGFKNLTSLRYLDLSYNQFNSTISD---  263 (790)
Q Consensus       191 ~l~~-l~~L~~L~L~~~~l--~~~~lp~~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~---  263 (790)
                      +..+ -++|+.|+++|+.-  ....+..-...+++|.+|||++|. ++......|-+++.|++|.++.|..  ++|.   
T Consensus       280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~  357 (419)
T KOG2120|consen  280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLL  357 (419)
T ss_pred             HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHee
Confidence            3332 26889999999752  122233344578999999999884 4433344577889999999999864  3444   


Q ss_pred             cccCCCCCCEEEccCcccccccCcccccCCCCCCE
Q 047929          264 CFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKT  298 (790)
Q Consensus       264 ~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~  298 (790)
                      .+...|.|.+|++.++--.+..... ...+++|+.
T Consensus       358 ~l~s~psl~yLdv~g~vsdt~mel~-~e~~~~lki  391 (419)
T KOG2120|consen  358 ELNSKPSLVYLDVFGCVSDTTMELL-KEMLSHLKI  391 (419)
T ss_pred             eeccCcceEEEEeccccCchHHHHH-HHhCccccc
Confidence            4566788999998776432222221 344555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=2.4e-09  Score=101.12  Aligned_cols=224  Identities=22%  Similarity=0.169  Sum_probs=122.9

Q ss_pred             CcEEEEEcCCCCCCcc-ccccCcCC-CCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcE
Q 047929           47 GHVLELNLERSELGGK-INPALVDL-KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH  124 (790)
Q Consensus        47 ~~v~~L~L~~~~~~~~-~~~~l~~l-~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~  124 (790)
                      ..|.++.+........ +.+.+.-+ ..|++||||+..++...+-..+..+.+|+.|.+.+.++.+.+...+.+-.+|+.
T Consensus       159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~  238 (419)
T KOG2120|consen  159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR  238 (419)
T ss_pred             CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence            3455555554433322 22222222 246667777666654444444556666777777666666655556666666777


Q ss_pred             EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccc--c-CcccCcCCCCCCEE
Q 047929          125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH--F-APLASANFSSLNAL  201 (790)
Q Consensus       125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~-~~~~l~~l~~L~~L  201 (790)
                      |+++.+.=......--.+.+++.|..|+++-+......--...-.--++|..|+++++.-.-  - .......+++|..|
T Consensus       239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            77766531111111123456666667776666655542111111223567777777764211  1 11223467888888


Q ss_pred             ECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCcc---CCCCCCCcEEeCCCCcCCccccccccCCCCCC
Q 047929          202 DLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDG---FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE  272 (790)
Q Consensus       202 ~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~---~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  272 (790)
                      ||+.+..-....-..+.+++.|++|.++.|..  .+|..   +...|.|.+|++.++--.+...-....+++|+
T Consensus       319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK  390 (419)
T ss_pred             ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence            88877532224445566788888888888853  23433   46678899999887754433222333445544

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.44  E-value=3.3e-07  Score=62.13  Aligned_cols=40  Identities=40%  Similarity=0.871  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHhhcCC-CCCCCCCCCCCC--CCCcccCceeec
Q 047929            4 LESERVALIKLKQDFK-DPSNHLASWIGD--VDCCEWGGVVCN   43 (790)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~~~w~~~--~~~~~~~~~~c~   43 (790)
                      +.+|..||++||+++. +|.+.+.+|...  .++|.|.||.|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            4689999999999997 678999999654  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.43  E-value=3.8e-08  Score=105.88  Aligned_cols=85  Identities=26%  Similarity=0.276  Sum_probs=53.2

Q ss_pred             eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccc---cCcc-ccCCCCCCEE
Q 047929          648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGK---IPQS-MSSLSFLNHL  723 (790)
Q Consensus       648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~---~p~~-l~~l~~L~~L  723 (790)
                      |+.+++++|.+. ..+..+..+..+..|++.+|.+...  ..+...+.+..+....+.+...   .... ......++..
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            566777777776 3334556677777788877777643  2345556777777777766522   1111 4456677777


Q ss_pred             ECcCCcccccCC
Q 047929          724 NLSDNKLVGKIP  735 (790)
Q Consensus       724 ~l~~n~l~~~~p  735 (790)
                      .+.+|+.....+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            788777765444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=1.2e-07  Score=89.96  Aligned_cols=90  Identities=21%  Similarity=0.178  Sum_probs=58.7

Q ss_pred             CCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCC
Q 047929          144 GPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL  223 (790)
Q Consensus       144 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L  223 (790)
                      ..+.++.+|+.+|.++.=.++...+.++|.|++|+++.|.+...+...-....+|++|-|.+..+.=......+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            44556666666666666566667778888888888888776654332224567788888877766444444555567777


Q ss_pred             cEEEccCCcC
Q 047929          224 VFLDLSSNIF  233 (790)
Q Consensus       224 ~~L~l~~~~~  233 (790)
                      +.|+++.|.+
T Consensus       149 telHmS~N~~  158 (418)
T KOG2982|consen  149 TELHMSDNSL  158 (418)
T ss_pred             hhhhhccchh
Confidence            7777777643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=5.8e-08  Score=91.98  Aligned_cols=211  Identities=22%  Similarity=0.227  Sum_probs=116.3

Q ss_pred             CCCEEECCCCCCCCCCcchhcc-CCCCCcEEEccCCcCCC--CCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCE
Q 047929          197 SLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRG--PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEY  273 (790)
Q Consensus       197 ~L~~L~L~~~~l~~~~lp~~l~-~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  273 (790)
                      .++.|.+.++.+........++ ..+.++.+||.+|.+..  .+...+.++|.|+.|+++.|.+...+...-....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            3445555555553322222232 35677888888887652  33344577888888888888776543322245677888


Q ss_pred             EEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCcccccc--chhhccCCCCcE
Q 047929          274 LSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQL--TNQLGLFKNLHT  351 (790)
Q Consensus       274 L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~  351 (790)
                      |-+.+..+...-....+..+|.+++|.++.|.+.....+...  .-..-+.++++....|......  -.--.-++++..
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c--~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNC--IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS  203 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccc--ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence            888877765444444467788888888887744322111100  0001123445555444322110  001123567777


Q ss_pred             EEccCcccCCC-CCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcce
Q 047929          352 LALSDNSVSGP-LPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVN  409 (790)
Q Consensus       352 L~L~~~~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  409 (790)
                      +-+..|.+... ....+..+|.+..|+++.+++..+.....+.++++|..+.+..+.+.
T Consensus       204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            77777765432 22345556667777777777766655555555555555555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.30  E-value=8.9e-09  Score=108.81  Aligned_cols=126  Identities=29%  Similarity=0.368  Sum_probs=75.8

Q ss_pred             CCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeee
Q 047929          555 RLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVM  634 (790)
Q Consensus       555 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  634 (790)
                      .|.+.+.++|.+. ....++.-++.|+.|+|++|+++..-  .+..                                  
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~----------------------------------  207 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRR----------------------------------  207 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHh----------------------------------
Confidence            4555666666665 33455566667777777777665211  1111                                  


Q ss_pred             ccchhhhhhcccceeEEEccCccCCCCCCc-ccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcccc-Cc
Q 047929          635 KGFMVEYNSILNLVRSIDISMNNFSGEIPM-EVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI-PQ  712 (790)
Q Consensus       635 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~  712 (790)
                                ++.|++|||++|.+. .+|. ....++ |+.|.|++|.++..  .++.+|.+|+.||+++|-+.+-. -.
T Consensus       208 ----------l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~  273 (1096)
T KOG1859|consen  208 ----------LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELE  273 (1096)
T ss_pred             ----------cccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhh
Confidence                      233456777777766 3333 223334 77888888877643  34677788888888888776421 12


Q ss_pred             cccCCCCCCEEECcCCccc
Q 047929          713 SMSSLSFLNHLNLSDNKLV  731 (790)
Q Consensus       713 ~l~~l~~L~~L~l~~n~l~  731 (790)
                      -+..|.+|+.|++.|||+.
T Consensus       274 pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  274 PLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHHHHHHHHHHhhcCCccc
Confidence            2455677777777777765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.25  E-value=2.7e-08  Score=105.28  Aligned_cols=110  Identities=27%  Similarity=0.387  Sum_probs=86.4

Q ss_pred             cccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCc-cccCCCCCCEEeCcCccCccccCccccCCCCCCE
Q 047929          644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNH  722 (790)
Q Consensus       644 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  722 (790)
                      .++.++.|+|++|++....  .+..++.|++|||+.|.+. .+|. ...+. .|+.|.+++|.++..  .++.+|.+|+.
T Consensus       185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~  258 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYG  258 (1096)
T ss_pred             HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhc
Confidence            3555789999999998533  6788999999999999998 4443 22333 499999999999854  57899999999


Q ss_pred             EECcCCcccccCC--CCCcCCccCCccccCCcccCCCCC
Q 047929          723 LNLSDNKLVGKIP--SSTQLQSFGASSITGNDLCGAPLS  759 (790)
Q Consensus       723 L~l~~n~l~~~~p--~~~~~~sl~~l~~~~n~l~~~~~~  759 (790)
                      ||+++|-+.+.-.  ....+.+|+.|++.||++|=.|-.
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~h  297 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWH  297 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHH
Confidence            9999998876432  224467889999999999966654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.24  E-value=5.2e-07  Score=84.53  Aligned_cols=252  Identities=23%  Similarity=0.222  Sum_probs=109.9

Q ss_pred             CCCCcEEECCCCCCCCC--chhHHhhCCCCCCCEEEccCccccc----------cCcccCcCCCCCCEEECCCCCCCCCC
Q 047929          145 PSLLEHLDTSDVDLIKA--SDWLLVINSLPSLKVLKLFSCKLHH----------FAPLASANFSSLNALDLSGNLFGKTS  212 (790)
Q Consensus       145 l~~L~~L~l~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~----------~~~~~l~~l~~L~~L~L~~~~l~~~~  212 (790)
                      +..+..+++++|.+...  ..+...+.+-.+|++.+++.--...          +...++.+|++|+..+|+.|.+.. .
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~-~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS-E  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc-c
Confidence            44444455554444443  3344455666666666665432211          112344455666666666665544 2


Q ss_pred             cchh----ccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccc---c
Q 047929          213 IPSW----VFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGT---I  285 (790)
Q Consensus       213 lp~~----l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~---~  285 (790)
                      .|+.    +.+-..|++|.+++|.+...-..-+++  .|.+|  .+|       ...+.-|.|++.....|++...   .
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~n-------KKaa~kp~Le~vicgrNRlengs~~~  176 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYN-------KKAADKPKLEVVICGRNRLENGSKEL  176 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHH-------hhhccCCCceEEEeccchhccCcHHH
Confidence            2322    233445566666655443211111110  00000  000       0011224444444444443310   0


Q ss_pred             CcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCcccc----ccchhhccCCCCcEEEccCcccCC
Q 047929          286 SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISG----QLTNQLGLFKNLHTLALSDNSVSG  361 (790)
Q Consensus       286 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~~~i~~  361 (790)
                      ....+..-..|+++.+..|.|............+..+.+|+.|++.+|.++.    .+...+..++.|++|.+.+|-+..
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            0111223345556666665554433333333344455566666666665542    223334445566777776665543


Q ss_pred             CCCcC----c--CCCCCCCEEECcCCcCCCcCC------hhhhccccccceeecCCCcc
Q 047929          362 PLPPA----S--GELSSLTYLDLSNNNLNGMIS------EIHFGNLTELAFFYANGNSV  408 (790)
Q Consensus       362 ~~~~~----~--~~l~~L~~L~l~~n~~~~~~~------~~~~~~l~~L~~l~l~~~~~  408 (790)
                      .-...    |  ...|+|+.|...+|.+.+...      ...-..++.|..+...+|.+
T Consensus       257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence            22111    1  124566666666665443221      11123445555555555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.17  E-value=6.2e-08  Score=96.32  Aligned_cols=85  Identities=20%  Similarity=0.170  Sum_probs=41.0

Q ss_pred             CcEEEEEcCCCCCCcccc--ccCcCCCCCCEEeCCCCC-CCCCCcCccccCCCCCCEEeCCCC-cccccCCC-CCCCCCC
Q 047929           47 GHVLELNLERSELGGKIN--PALVDLKHLNLLDLSGND-FQGIQIPEYIGSMDNLRYLNLSGA-GFAGWIPH-QLGNLSN  121 (790)
Q Consensus        47 ~~v~~L~L~~~~~~~~~~--~~l~~l~~L~~L~Ls~~~-~~~~~l~~~~~~l~~L~~L~Ls~~-~~~~~lp~-~l~~l~~  121 (790)
                      +++++|++.|+.-.+.-+  .....++++++|++.++. +++..+-..-..+++|++|++..| .++...-+ -...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            456666666664322222  333456666666666654 222212222234566666666663 23332222 1244566


Q ss_pred             CcEEECcCCc
Q 047929          122 LMHLDLSGSY  131 (790)
Q Consensus       122 L~~L~ls~~~  131 (790)
                      |++++++.|.
T Consensus       218 L~~lNlSwc~  227 (483)
T KOG4341|consen  218 LKYLNLSWCP  227 (483)
T ss_pred             HHHhhhccCc
Confidence            6666666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.13  E-value=1.1e-05  Score=82.99  Aligned_cols=74  Identities=12%  Similarity=0.200  Sum_probs=45.4

Q ss_pred             CCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCC-cccccCCccccCCCCC
Q 047929          502 GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN-KLHGIFPIQICHLSSL  580 (790)
Q Consensus       502 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~l~~L  580 (790)
                      ..+.+++.|++++|.++.. | .  -.++|+.|.+++|.-...+|..+   .++|++|++++| .+. .+|      ++|
T Consensus        49 ~~~~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~sL  114 (426)
T PRK15386         49 EEARASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ESV  114 (426)
T ss_pred             HHhcCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------ccc
Confidence            3457788888888877643 3 1  22468888888765544566543   256777777777 332 222      356


Q ss_pred             cEEEccCCc
Q 047929          581 QILDVAYNR  589 (790)
Q Consensus       581 ~~L~ls~n~  589 (790)
                      +.|+++++.
T Consensus       115 e~L~L~~n~  123 (426)
T PRK15386        115 RSLEIKGSA  123 (426)
T ss_pred             ceEEeCCCC
Confidence            666665544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.11  E-value=4.5e-07  Score=84.93  Aligned_cols=236  Identities=18%  Similarity=0.237  Sum_probs=111.8

Q ss_pred             CcEEEEEcCCCCCCcc----ccccCcCCCCCCEEeCCCCCCCC--CCc-------CccccCCCCCCEEeCCCCcccccCC
Q 047929           47 GHVLELNLERSELGGK----INPALVDLKHLNLLDLSGNDFQG--IQI-------PEYIGSMDNLRYLNLSGAGFAGWIP  113 (790)
Q Consensus        47 ~~v~~L~L~~~~~~~~----~~~~l~~l~~L~~L~Ls~~~~~~--~~l-------~~~~~~l~~L~~L~Ls~~~~~~~lp  113 (790)
                      ..++.++|+||.+...    +...+++-++|++.+++.-....  ..+       ..++-+|++|+..+||.|-+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4567777777766432    23444555666666665431110  011       1233455666666666665554444


Q ss_pred             CC----CCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCC--chh---------HHhhCCCCCCCEEE
Q 047929          114 HQ----LGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKA--SDW---------LLVINSLPSLKVLK  178 (790)
Q Consensus       114 ~~----l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~---------~~~l~~l~~L~~L~  178 (790)
                      ..    +++-..|+||.+++|.                          +...  ..+         .+...+-|.|++..
T Consensus       110 e~L~d~is~~t~l~HL~l~NnG--------------------------lGp~aG~rigkal~~la~nKKaa~kp~Le~vi  163 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNG--------------------------LGPIAGGRIGKALFHLAYNKKAADKPKLEVVI  163 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCC--------------------------CCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence            32    3444556666666554                          3222  111         11223345555555


Q ss_pred             ccCccccccCc----ccCcCCCCCCEEECCCCCCCCCCcch----hccCCCCCcEEEccCCcCCCC----CCccCCCCCC
Q 047929          179 LFSCKLHHFAP----LASANFSSLNALDLSGNLFGKTSIPS----WVFGLSDLVFLDLSSNIFRGP----IPDGFKNLTS  246 (790)
Q Consensus       179 l~~~~~~~~~~----~~l~~l~~L~~L~L~~~~l~~~~lp~----~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~  246 (790)
                      ...|++...+.    ..+.....|+++.+.+|.|....+..    .++.+.+|+.||+.+|.++-.    +..++...+.
T Consensus       164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            55554433322    12222345555555555543211111    122355566666666654421    2223334455


Q ss_pred             CcEEeCCCCcCCcccccc----c--cCCCCCCEEEccCccccccc------CcccccCCCCCCEEEccCCCCCC
Q 047929          247 LRYLDLSYNQFNSTISDC----F--SNFDDLEYLSLGYNRLQGTI------SSIGLENLTFIKTLDLSFNELGQ  308 (790)
Q Consensus       247 L~~L~l~~~~~~~~~~~~----l--~~l~~L~~L~l~~~~l~~~~------~~~~l~~l~~L~~L~l~~~~~~~  308 (790)
                      |+.|.+..|-++......    |  ...|+|+.|...+|.+.+.+      +...-.++|-|..|.+.+|.+..
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            666666666554332221    1  13466666666666544322      11112445667777777777754

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.92  E-value=4.4e-07  Score=90.47  Aligned_cols=66  Identities=24%  Similarity=0.208  Sum_probs=25.6

Q ss_pred             CCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCc
Q 047929          117 GNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC  182 (790)
Q Consensus       117 ~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  182 (790)
                      .+++++++|++.++.......-...-..+++|++|++..+.......+.....+|++|++|++++|
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc  226 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWC  226 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccC
Confidence            445555555555543111111111222344444444444333333222223334444444444444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=8.5e-05  Score=76.60  Aligned_cols=91  Identities=14%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             CCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcE
Q 047929          479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRI  558 (790)
Q Consensus       479 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  558 (790)
                      .+..++.|++++|.++ .+| .+  .++|+.|.+++|.-....|..+  .++|+.|++++|.....+|       ++|+.
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccce
Confidence            4578899999999877 455 22  3579999998876544555544  3689999999884332343       45788


Q ss_pred             EEcCCCcccccCCccccCC-CCCcEEEccC
Q 047929          559 LNLRSNKLHGIFPIQICHL-SSLQILDVAY  587 (790)
Q Consensus       559 L~L~~n~~~~~~~~~~~~l-~~L~~L~ls~  587 (790)
                      |+++++....     +..+ ++|+.|.+.+
T Consensus       117 L~L~~n~~~~-----L~~LPssLk~L~I~~  141 (426)
T PRK15386        117 LEIKGSATDS-----IKNVPNGLTSLSINS  141 (426)
T ss_pred             EEeCCCCCcc-----cccCcchHhheeccc
Confidence            8887665432     1222 3677777644

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.80  E-value=1e-05  Score=90.80  Aligned_cols=112  Identities=21%  Similarity=0.224  Sum_probs=53.2

Q ss_pred             CCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCc
Q 047929          145 PSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLV  224 (790)
Q Consensus       145 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~  224 (790)
                      +|+|+.|.+.+.....++ ......++|+|..|++++++++.+  ..++++++|++|.+.+-.+.....-..++.+++|+
T Consensus       147 LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             CcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            344444444444333332 233455566666666666655555  44555566666665555443222222345566666


Q ss_pred             EEEccCCcCCCCC--C----ccCCCCCCCcEEeCCCCcCCc
Q 047929          225 FLDLSSNIFRGPI--P----DGFKNLTSLRYLDLSYNQFNS  259 (790)
Q Consensus       225 ~L~l~~~~~~~~~--p----~~~~~l~~L~~L~l~~~~~~~  259 (790)
                      .||+|........  .    +.-..+|+||.||.+++.+..
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            6666554332110  0    011224555555555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.78  E-value=8.9e-07  Score=74.16  Aligned_cols=103  Identities=23%  Similarity=0.301  Sum_probs=51.7

Q ss_pred             EEEccCccCCCCCCc---ccccCCCCCEEeCCCCcCCcCCCccccC-CCCCCEEeCcCccCccccCccccCCCCCCEEEC
Q 047929          650 SIDISMNNFSGEIPM---EVTNLKGLQSLNLSHNSFIGKIPETIGN-MRSIESLDLSGNQISGKIPQSMSSLSFLNHLNL  725 (790)
Q Consensus       650 ~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l  725 (790)
                      .+||++|.+. .++.   .+.....|+..+|++|.+. ..|+.|.. ++..+.|++++|.+. .+|..++.++.|+.|++
T Consensus        31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL  107 (177)
T ss_pred             hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence            4555555554 2222   2233444555566666555 33333322 345566666666665 34455666666666666


Q ss_pred             cCCcccccCCCCCcCCccCCccccCCcccC
Q 047929          726 SDNKLVGKIPSSTQLQSFGASSITGNDLCG  755 (790)
Q Consensus       726 ~~n~l~~~~p~~~~~~sl~~l~~~~n~l~~  755 (790)
                      +.|++...+-...++.+|..|+..+|..-.
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCCCcccc
Confidence            666655444444445555555555554433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.77  E-value=9.4e-06  Score=91.10  Aligned_cols=112  Identities=25%  Similarity=0.315  Sum_probs=72.2

Q ss_pred             CcEEEEEcCCCCC-CccccccC-cCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcE
Q 047929           47 GHVLELNLERSEL-GGKINPAL-VDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH  124 (790)
Q Consensus        47 ~~v~~L~L~~~~~-~~~~~~~l-~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~  124 (790)
                      ..+++|+++|... ...+|..+ ..||+|+.|.+++-.+....+.....++++|++||+|+++++. + ..+++|++||+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence            4678888887643 33344444 3578888888887766544444555678888888888888876 3 66788888888


Q ss_pred             EECcCCcccccccCccccCCCCCCcEEECCCCCCCCC
Q 047929          125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKA  161 (790)
Q Consensus       125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  161 (790)
                      |.+.+=.+. ...++..+-++++|+.||++.......
T Consensus       200 L~mrnLe~e-~~~~l~~LF~L~~L~vLDIS~~~~~~~  235 (699)
T KOG3665|consen  200 LSMRNLEFE-SYQDLIDLFNLKKLRVLDISRDKNNDD  235 (699)
T ss_pred             HhccCCCCC-chhhHHHHhcccCCCeeeccccccccc
Confidence            877654332 223444555666666666665544443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.61  E-value=8.2e-05  Score=67.24  Aligned_cols=125  Identities=22%  Similarity=0.275  Sum_probs=80.4

Q ss_pred             EEEEEcCCCCCCccccccCcCC----CCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcE
Q 047929           49 VLELNLERSELGGKINPALVDL----KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH  124 (790)
Q Consensus        49 v~~L~L~~~~~~~~~~~~l~~l----~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~  124 (790)
                      -++++|.+..+.     .+.++    .....+||++|.+...   +.|..++.|..|.+.+|+|+.+-|.--..+++|.+
T Consensus        21 e~e~~LR~lkip-----~ienlg~~~d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~   92 (233)
T KOG1644|consen   21 ERELDLRGLKIP-----VIENLGATLDQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKT   92 (233)
T ss_pred             cccccccccccc-----chhhccccccccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccce
Confidence            455666665542     12222    3445688999888733   45778889999999999999866655567788999


Q ss_pred             EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccC---cccCcCCCCCCEE
Q 047929          125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFA---PLASANFSSLNAL  201 (790)
Q Consensus       125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L  201 (790)
                      |.+.+|.+.... ++.                          -+..||+|+.|.+-+|.+....   ...+..+++|++|
T Consensus        93 L~LtnNsi~~l~-dl~--------------------------pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~L  145 (233)
T KOG1644|consen   93 LILTNNSIQELG-DLD--------------------------PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTL  145 (233)
T ss_pred             EEecCcchhhhh-hcc--------------------------hhccCCccceeeecCCchhcccCceeEEEEecCcceEe
Confidence            999888754322 222                          3455666666666666554432   2345567777777


Q ss_pred             ECCCCCC
Q 047929          202 DLSGNLF  208 (790)
Q Consensus       202 ~L~~~~l  208 (790)
                      |..+...
T Consensus       146 DF~kVt~  152 (233)
T KOG1644|consen  146 DFQKVTR  152 (233)
T ss_pred             ehhhhhH
Confidence            7776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.61  E-value=4e-05  Score=51.96  Aligned_cols=36  Identities=39%  Similarity=0.694  Sum_probs=15.8

Q ss_pred             CCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCc
Q 047929          671 GLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS  707 (790)
Q Consensus       671 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  707 (790)
                      +|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444555555444 23333444445555555544444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.61  E-value=4.2e-05  Score=51.84  Aligned_cols=37  Identities=46%  Similarity=0.733  Sum_probs=22.6

Q ss_pred             CCCCEEeCcCccCccccCccccCCCCCCEEECcCCccc
Q 047929          694 RSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLV  731 (790)
Q Consensus       694 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  731 (790)
                      ++|++|++++|+++ .+|..++.|++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35667777777766 34445666777777777777665

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.60  E-value=3.9e-05  Score=72.57  Aligned_cols=127  Identities=25%  Similarity=0.269  Sum_probs=80.8

Q ss_pred             cEEEEEcCCC-CCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCC--cccccCCCCCCCCCCCcE
Q 047929           48 HVLELNLERS-ELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGA--GFAGWIPHQLGNLSNLMH  124 (790)
Q Consensus        48 ~v~~L~L~~~-~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~--~~~~~lp~~l~~l~~L~~  124 (790)
                      .++.+.+..+ ...+.+..-.-.+..|+.|++.+..++..   ..+..|++|+.|.+|.|  .+.+.++-...++++|++
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~   95 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKV   95 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeE
Confidence            4455555544 22334555555667777777777666532   34557889999999999  666667777778899999


Q ss_pred             EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCch-hHHhhCCCCCCCEEE
Q 047929          125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASD-WLLVINSLPSLKVLK  178 (790)
Q Consensus       125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~  178 (790)
                      |++++|++.. ...+..++.+.+|..|++.++....... --..+.-+++|+.|+
T Consensus        96 l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen   96 LNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             EeecCCcccc-ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            9999998765 4555566666667777777666555421 122334444444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.60  E-value=0.00012  Score=66.23  Aligned_cols=85  Identities=22%  Similarity=0.180  Sum_probs=49.9

Q ss_pred             CCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEE
Q 047929          221 SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLD  300 (790)
Q Consensus       221 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~  300 (790)
                      .+...+||++|.+.. ++ .|..++.|.+|.+.+|.|+.+.|.--..+++|+.|.+.+|.+........+..+|+|+.|.
T Consensus        42 d~~d~iDLtdNdl~~-l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK-LD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhh-cc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            345566666666552 22 3666667777777777776665554455566777777776665322222355566666666


Q ss_pred             ccCCCCC
Q 047929          301 LSFNELG  307 (790)
Q Consensus       301 l~~~~~~  307 (790)
                      +-+|.+.
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            6666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.53  E-value=1e-05  Score=67.96  Aligned_cols=116  Identities=28%  Similarity=0.394  Sum_probs=85.9

Q ss_pred             ceeEEEccCccCCCCCCccc-ccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEEC
Q 047929          647 LVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNL  725 (790)
Q Consensus       647 ~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l  725 (790)
                      .|+..+|++|.+. ..|+.| ...+.+++|++++|.+. .+|+.+..+++|+.|+++.|.+. ..|..+..|.++-.|+.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            3677899999998 456555 45679999999999998 67888999999999999999999 67888888999999999


Q ss_pred             cCCcccccCCCCCcCCccCCccccCCcccCCCCCCCCcccccccc
Q 047929          726 SDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLALC  770 (790)
Q Consensus       726 ~~n~l~~~~p~~~~~~sl~~l~~~~n~l~~~~~~~c~~~~~~~~~  770 (790)
                      .+|.+. .+|......++..+.-.||    -|+..-+.++.+++.
T Consensus       131 ~~na~~-eid~dl~~s~~~al~~lgn----epl~~~~~~klqa~k  170 (177)
T KOG4579|consen  131 PENARA-EIDVDLFYSSLPALIKLGN----EPLGDETKKKLQALK  170 (177)
T ss_pred             CCCccc-cCcHHHhccccHHHHHhcC----CcccccCcccccccC
Confidence            999876 5665533344444433343    233333444555555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.06  E-value=0.0027  Score=55.88  Aligned_cols=120  Identities=19%  Similarity=0.285  Sum_probs=50.3

Q ss_pred             cCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCC
Q 047929          477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRL  556 (790)
Q Consensus       477 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  556 (790)
                      |..+++|+.+.+.. .+.......|..+++|+.+.+.++ +..+....|.++++++.+.+.+ .+. .++...+..+++|
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccc
Confidence            44455566666553 344344455666666666666653 5555555666666666666654 222 3334444456666


Q ss_pred             cEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhcccc
Q 047929          557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTA  603 (790)
Q Consensus       557 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~  603 (790)
                      +.+++..+ +.......|.++ .|+.+.+.. .+.......|.++++
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~  127 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK  127 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence            66666554 443444555565 667666654 333233334444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=2.9e-05  Score=73.43  Aligned_cols=103  Identities=22%  Similarity=0.240  Sum_probs=73.2

Q ss_pred             CCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCc
Q 047929           70 LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLE  149 (790)
Q Consensus        70 l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~  149 (790)
                      +.+++.|++-++.+.+++   ...+++.|++|.||-|+|+.  -..+..|++|+.|.|+.|.|. ..+++.++.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHHH---HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence            556777888888888663   24478888888888888876  334778888888888888654 344567778888888


Q ss_pred             EEECCCCCCCCC---chhHHhhCCCCCCCEEE
Q 047929          150 HLDTSDVDLIKA---SDWLLVINSLPSLKVLK  178 (790)
Q Consensus       150 ~L~l~~~~~~~~---~~~~~~l~~l~~L~~L~  178 (790)
                      .|.+..|.....   .--...+..+|+|+.|+
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888887776654   22234566667776665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.85  E-value=0.0032  Score=55.36  Aligned_cols=99  Identities=23%  Similarity=0.313  Sum_probs=41.9

Q ss_pred             cCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCC
Q 047929          477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRL  556 (790)
Q Consensus       477 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  556 (790)
                      |..+++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|+.+++..+ +. .++...+..+ .|
T Consensus        31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l  105 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NL  105 (129)
T ss_dssp             TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--T-
T ss_pred             ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-Cc
Confidence            455556666666654 4434444566666667776654 444444556666677777776554 32 3444444444 66


Q ss_pred             cEEEcCCCcccccCCccccCCCCCc
Q 047929          557 RILNLRSNKLHGIFPIQICHLSSLQ  581 (790)
Q Consensus       557 ~~L~L~~n~~~~~~~~~~~~l~~L~  581 (790)
                      +.+.+.. .+..+....|.++++|+
T Consensus       106 ~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen  106 KEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             -EEE-TT-B-SS----GGG------
T ss_pred             eEEEECC-CccEECCccccccccCC
Confidence            6666654 33334445566665553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.85  E-value=0.00062  Score=64.59  Aligned_cols=86  Identities=23%  Similarity=0.291  Sum_probs=38.2

Q ss_pred             CCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCC--cccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCc
Q 047929          480 WPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSN--RLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLR  557 (790)
Q Consensus       480 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  557 (790)
                      +..|+.+++.++.++..  ..|..+++|++|.++.|  .+.+........+|+|+++++++|++...-...-...+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            34444455555444411  12344555555555555  344333333444455555555555543200000112344555


Q ss_pred             EEEcCCCccc
Q 047929          558 ILNLRSNKLH  567 (790)
Q Consensus       558 ~L~L~~n~~~  567 (790)
                      .|++.+|..+
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            5555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=8.3e-05  Score=70.43  Aligned_cols=101  Identities=25%  Similarity=0.289  Sum_probs=68.9

Q ss_pred             CCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCC
Q 047929          443 QKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIP  522 (790)
Q Consensus       443 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  522 (790)
                      +.+.++|+..+|.+.++               .....++.|+.|.|+-|+|+..-  .+..|++|++|+|+.|.|..+.-
T Consensus        18 l~~vkKLNcwg~~L~DI---------------sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldE   80 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---------------SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDE   80 (388)
T ss_pred             HHHhhhhcccCCCccHH---------------HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHH
Confidence            34566777777777665               22346678888888888887433  36678888888888888765432


Q ss_pred             -ccccCCCCCcEEECcCCcccccCchh----hhhcCCCCcEEE
Q 047929          523 -VPFENCSQLVALDMGENEFVGNIPTW----MGERFSRLRILN  560 (790)
Q Consensus       523 -~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~~L~~L~  560 (790)
                       ..+.++|+|+.|.|.+|+-.+..+..    ....+|+|+.||
T Consensus        81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence             45677888888888888766655532    234577888776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.54  E-value=0.00017  Score=80.29  Aligned_cols=192  Identities=23%  Similarity=0.156  Sum_probs=111.8

Q ss_pred             cCCCCCCEEeCCCCC-CCCCCcCccccCCCCCCEEeCCCC-cccccC----CCCCCCCCCCcEEECcCCcccccccCccc
Q 047929           68 VDLKHLNLLDLSGND-FQGIQIPEYIGSMDNLRYLNLSGA-GFAGWI----PHQLGNLSNLMHLDLSGSYYELRVEDISW  141 (790)
Q Consensus        68 ~~l~~L~~L~Ls~~~-~~~~~l~~~~~~l~~L~~L~Ls~~-~~~~~l----p~~l~~l~~L~~L~ls~~~~~~~~~~~~~  141 (790)
                      ..++.|+.|.+.++. +....+-.....+++|+.|+++++ ......    ......+++|++|+++++.. .....+..
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-isd~~l~~  263 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL-VTDIGLSA  263 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc-cCchhHHH
Confidence            347888888888774 433223455667889999999873 221111    22345678889999988752 23333344


Q ss_pred             cC-CCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCcccc-cc-CcccCcCCCCCCEEECCCCCCCCCCcchhcc
Q 047929          142 LA-GPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLH-HF-APLASANFSSLNALDLSGNLFGKTSIPSWVF  218 (790)
Q Consensus       142 l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~-~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~  218 (790)
                      ++ .+++|++|.+.++....+.++......++.|++|++++|... +. ......++++|+.|.+.....          
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------  333 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------  333 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------
Confidence            44 378899999777776666777778888999999999988653 11 112233466666655443321          


Q ss_pred             CCCCCcEEEccCCcCC---CCCCccCCCCCCCcEEeCCCCcCCccc-cccccCCCCC
Q 047929          219 GLSDLVFLDLSSNIFR---GPIPDGFKNLTSLRYLDLSYNQFNSTI-SDCFSNFDDL  271 (790)
Q Consensus       219 ~l~~L~~L~l~~~~~~---~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L  271 (790)
                       +..++.+.+..+...   .........+++++.+.+.++...... ...+.+++.|
T Consensus       334 -c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  334 -CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             -CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence             333444444333211   112223456677777777766633222 2334445554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.52  E-value=0.00028  Score=78.46  Aligned_cols=177  Identities=25%  Similarity=0.142  Sum_probs=85.7

Q ss_pred             CCCCcEEECcCCcccccccCccccCCCCCCcEEECCCC-CCCCC--chhHHhhCCCCCCCEEEccCcc-ccccCcccCcC
Q 047929          119 LSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDV-DLIKA--SDWLLVINSLPSLKVLKLFSCK-LHHFAPLASAN  194 (790)
Q Consensus       119 l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~--~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~  194 (790)
                      +++|+.|.+.++.-............++.|+.|+++++ .....  .........+++|+.|+++++. +++..-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555555432111112233445566666666542 11111  1122244556777777777766 55544444433


Q ss_pred             -CCCCCEEECCCCC-CCCCCcchhccCCCCCcEEEccCCcCCCC--CCccCCCCCCCcEEeCCCCcCCccccccccCCCC
Q 047929          195 -FSSLNALDLSGNL-FGKTSIPSWVFGLSDLVFLDLSSNIFRGP--IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD  270 (790)
Q Consensus       195 -l~~L~~L~L~~~~-l~~~~lp~~l~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  270 (790)
                       +++|++|.+.++. +++..+-.....++.|++|++++|...+.  +.....++++|+.|.+.....          ++.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~  336 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPS  336 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Ccc
Confidence             6677777766665 45544555455677777777777754311  112233455555544332221          223


Q ss_pred             CCEEEccCccccc--ccCcccccCCCCCCEEEccCCC
Q 047929          271 LEYLSLGYNRLQG--TISSIGLENLTFIKTLDLSFNE  305 (790)
Q Consensus       271 L~~L~l~~~~l~~--~~~~~~l~~l~~L~~L~l~~~~  305 (790)
                      ++.+.+.......  .........+++++.+.+..+.
T Consensus       337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            3333333221110  1222235566666666666655

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.71  E-value=0.012  Score=32.88  Aligned_cols=12  Identities=58%  Similarity=0.966  Sum_probs=5.7

Q ss_pred             CCEEeCcCccCc
Q 047929          696 IESLDLSGNQIS  707 (790)
Q Consensus       696 L~~L~l~~n~l~  707 (790)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.51  E-value=0.016  Score=32.47  Aligned_cols=21  Identities=48%  Similarity=0.828  Sum_probs=13.2

Q ss_pred             CCCEEeCCCCcccccCCCCCCC
Q 047929           97 NLRYLNLSGAGFAGWIPHQLGN  118 (790)
Q Consensus        97 ~L~~L~Ls~~~~~~~lp~~l~~  118 (790)
                      +|++||+++|+++ .+|.+|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4667777777766 36655554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.42  E-value=0.0053  Score=57.01  Aligned_cols=83  Identities=16%  Similarity=0.127  Sum_probs=68.0

Q ss_pred             CCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEE
Q 047929           46 TGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL  125 (790)
Q Consensus        46 ~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L  125 (790)
                      ..+++.||++.+.+. .+..-+..++.+..|+++.|.+.  .+|+.++....++++++..|+.+. .|.++++.++++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKN  116 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchh
Confidence            568899999988754 34456677788888999988887  578888888899999988887775 89999999999999


Q ss_pred             ECcCCcc
Q 047929          126 DLSGSYY  132 (790)
Q Consensus       126 ~ls~~~~  132 (790)
                      ++.++.+
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            9988764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.92  E-value=0.13  Score=26.59  Aligned_cols=10  Identities=50%  Similarity=0.843  Sum_probs=3.2

Q ss_pred             CCEEeCcCcc
Q 047929          696 IESLDLSGNQ  705 (790)
Q Consensus       696 L~~L~l~~n~  705 (790)
                      |+.|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.78  E-value=0.0019  Score=69.60  Aligned_cols=39  Identities=26%  Similarity=0.386  Sum_probs=24.0

Q ss_pred             CCCCEEEccCCcccccCC----ccccCCCCCcEEECcCCcccc
Q 047929          505 TSLRSLNLRSNRLSGIIP----VPFENCSQLVALDMGENEFVG  543 (790)
Q Consensus       505 ~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~l~~n~~~~  543 (790)
                      ..++.++++.|.++....    ..+..++.++.+.++.|.+.+
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            556667777776654433    334456677777777776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.88  E-value=0.061  Score=49.29  Aligned_cols=82  Identities=10%  Similarity=0.097  Sum_probs=40.9

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCc-hhhhhcCCCCcEEEcCCC-cccccCCccccCCCCCcEE
Q 047929          506 SLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIP-TWMGERFSRLRILNLRSN-KLHGIFPIQICHLSSLQIL  583 (790)
Q Consensus       506 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~L  583 (790)
                      .++.++-+++.|..+.-..+..++.++.|.+.+|...+..- ..+..-.++|+.|+|++| +|++..-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            34455555555554444455555555555555554332111 112223456666666665 3443333345556666666


Q ss_pred             EccC
Q 047929          584 DVAY  587 (790)
Q Consensus       584 ~ls~  587 (790)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.92  E-value=0.4  Score=28.03  Aligned_cols=15  Identities=47%  Similarity=0.680  Sum_probs=8.1

Q ss_pred             CCCCEEeCcCccCcc
Q 047929          694 RSIESLDLSGNQISG  708 (790)
Q Consensus       694 ~~L~~L~l~~n~l~~  708 (790)
                      ++|+.|++++|++..
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            455555555555553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.92  E-value=0.4  Score=28.03  Aligned_cols=15  Identities=47%  Similarity=0.680  Sum_probs=8.1

Q ss_pred             CCCCEEeCcCccCcc
Q 047929          694 RSIESLDLSGNQISG  708 (790)
Q Consensus       694 ~~L~~L~l~~n~l~~  708 (790)
                      ++|+.|++++|++..
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            455555555555553

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.83  E-value=0.024  Score=52.86  Aligned_cols=85  Identities=19%  Similarity=0.222  Sum_probs=70.5

Q ss_pred             ccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEE
Q 047929          645 LNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLN  724 (790)
Q Consensus       645 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  724 (790)
                      ....+.||++.|.+- .+-..|.-++.|..|+++.|.+. ..|+.++.+..+..++...|..+ ..|.++..++.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            345678999988875 44556677888899999999886 78888898899999998888887 6889999999999999


Q ss_pred             CcCCcccc
Q 047929          725 LSDNKLVG  732 (790)
Q Consensus       725 l~~n~l~~  732 (790)
                      ..+|++..
T Consensus       118 ~k~~~~~~  125 (326)
T KOG0473|consen  118 QKKTEFFR  125 (326)
T ss_pred             hccCcchH
Confidence            99998764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.67  E-value=0.068  Score=48.99  Aligned_cols=81  Identities=23%  Similarity=0.185  Sum_probs=37.8

Q ss_pred             cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCcccc-CCCCCCEEeCCCCc-ccccCCCCCCCCCCCcEE
Q 047929           48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIG-SMDNLRYLNLSGAG-FAGWIPHQLGNLSNLMHL  125 (790)
Q Consensus        48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~-~l~~L~~L~Ls~~~-~~~~lp~~l~~l~~L~~L  125 (790)
                      .|..++-+++.|..+--+-+.+++.++.|.+.+|...+.---+.++ -.++|+.|++++|. |++.--..+.++++|+-|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3566666666665555555666666666666555432210011111 23455555555542 333222233444444444


Q ss_pred             ECc
Q 047929          126 DLS  128 (790)
Q Consensus       126 ~ls  128 (790)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=86.23  E-value=0.012  Score=63.70  Aligned_cols=38  Identities=26%  Similarity=0.250  Sum_probs=22.3

Q ss_pred             CCCCEEEccCCcccccc----chhhccCCCCcEEEccCcccC
Q 047929          323 FELESLFLRGCKISGQL----TNQLGLFKNLHTLALSDNSVS  360 (790)
Q Consensus       323 ~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~~~i~  360 (790)
                      ..+++++++.|.++...    ...+..++.++.+.++.|.+.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            34566666666655432    223444567777777777665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=82.06  E-value=1.2  Score=25.91  Aligned_cols=20  Identities=35%  Similarity=0.497  Sum_probs=12.8

Q ss_pred             CCCCCEEeCCCCcCCcCCCc
Q 047929          669 LKGLQSLNLSHNSFIGKIPE  688 (790)
Q Consensus       669 l~~L~~L~L~~n~l~~~~p~  688 (790)
                      +++|+.|+|++|.+....+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777744333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=82.06  E-value=1.2  Score=25.91  Aligned_cols=20  Identities=35%  Similarity=0.497  Sum_probs=12.8

Q ss_pred             CCCCCEEeCCCCcCCcCCCc
Q 047929          669 LKGLQSLNLSHNSFIGKIPE  688 (790)
Q Consensus       669 l~~L~~L~L~~n~l~~~~p~  688 (790)
                      +++|+.|+|++|.+....+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777744333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	790
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-28
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-28
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-05
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		5e-08
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-07
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-07
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		9e-07
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-06
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		5e-06
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		6e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		4e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		6e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		8e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		1e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		4e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		9e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  123 bits (309), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 155/533 (29%), Positives = 224/533 (42%), Gaps = 94/533 (17%)
Query: 196 SSLNALDLSGN-LFGKTSIPSWVFGLSDLVFLDLSSNI--FRGPIPDGFKNLTSLRYLDL 252
           +SL +LDLS N L G  +  + +   S L FL++SSN   F G +  G K L SL  LDL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 158
Query: 253 SYNQFNST------ISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
           S N  +        +SD      +L++L++  N++ G +      NL F   LD+S N  
Sbjct: 159 SANSISGANVVGWVLSD---GCGELKHLAISGNKISGDVDVSRCVNLEF---LDVSSNNF 212
Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA 366
              I  + D    C+A  L+ L + G K+SG  +  +     L  L +S N   GP+PP 
Sbjct: 213 STGIPFLGD----CSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266
Query: 367 SGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPF-----Q 421
              L SL YL L+ N   G I +   G    L     +GN          VPPF      
Sbjct: 267 --PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-----YGAVPPFFGSCSL 319
Query: 422 LLALRLRSCHLGPHFP-SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNW 480
           L +L L S +     P   L   + L  LD+S    S  +P    N              
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS---------- 369
Query: 481 PDLRVLNLGNNKFTGSI--PISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGE 538
             L  L+L +N F+G I   +                   G IP    NCS+LV+L +  
Sbjct: 370 --LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 539 NEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598
           N   G IP+ +G   S+LR L L  N L G  P ++ ++ +L+ L + +N L+G +P  +
Sbjct: 428 NYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 599 NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNF 658
           +N T +                                              I +S N  
Sbjct: 487 SNCTNL--------------------------------------------NWISLSNNRL 502
Query: 659 SGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIP 711
           +GEIP  +  L+ L  L LS+NSF G IP  +G+ RS+  LDL+ N  +G IP
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 178/690 (25%), Positives = 263/690 (38%), Gaps = 109/690 (15%)
Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASA-NFSSLNALDLSGN 206
           L  LD S   L      L  + S   LK L + S  L     ++     +SL  LDLS N
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 207 LFGKTSIPSWVFGLSD--------------------------LVFLDLSSNIFRGPIPDG 240
                ++  WV  LSD                          L FLD+SSN F   IP  
Sbjct: 159 SISGANVVGWV--LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-F 215
Query: 241 FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLD 300
             + ++L++LD+S N+ +   S   S   +L+ L++  N+  G I  + L++L ++   +
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 275
Query: 301 LSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS 360
             F        EI D +S  A   L  L L G    G +    G    L +LALS N+ S
Sbjct: 276 NKF------TGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 361 GPLPPASG-ELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPP 419
           G LP  +  ++  L  LDLS N  +G + E    +LT L+                    
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPE----SLTNLSA------------------- 365
Query: 420 FQLLALRLRSCHL-GPHFPSWLHSQKH-LSKLDISNTRISDIIPRWFWN----------- 466
             LL L L S +  GP  P+   + K+ L +L + N   +  IP    N           
Sbjct: 366 -SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 467 SIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPVPFE 526
           +    TIP    +   LR L L  N   G IP  +                 G IP    
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 527 NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVA 586
           NC+ L  + +  N   G IP W+G R   L IL L +N   G  P ++    SL  LD+ 
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 587 YNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEIS-----LVMKGFMVEY 641
            N  +G++P  +  F     I ++  +    +   +ND + +E       L  +G   E 
Sbjct: 544 TNLFNGTIPAAM--FKQSGKIAANF-IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 600
Query: 642 NSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDL 701
            + L+     +I+   + G       N   +  L++S+N   G IP+ IG+M  +  L+L
Sbjct: 601 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 702 SGNQIS------------------------GKIPQXXXXXXXXXXXXXXXXKLVGKIPSS 737
             N IS                        G+IPQ                 L G IP  
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Query: 738 TQLQSFGASSITGND-LCGAPLSNCTEKNV 766
            Q ++F  +    N  LCG PL  C   N 
Sbjct: 721 GQFETFPPAKFLNNPGLCGYPLPRCDPSNA 750

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 89/229 (38%), Gaps = 6/229 (2%)
Query: 473 IPDCWMNWPDLRVLNLGN-NKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQL 531
           IP    N P L  L +G  N   G IP ++                 G IP        L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 532 VALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSL-QILDVAYNRL 590
           V LD   N   G +P  +      L  +    N++ G  P      S L   + ++ NRL
Sbjct: 128 VTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 591 SGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSI--LNLV 648
           +G +P    N        S + ++      F +D   ++I L       +   +     +
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIE 697
             +D+  N   G +P  +T LK L SLN+S N+  G+IP+  GN++  +
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 653 ISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQ 712
           I+  N SG IP  ++ +K L +L+ S+N+  G +P +I ++ ++  +   GN+ISG IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 713 XX-XXXXXXXXXXXXXXKLVGKIPSS 737
                            +L GKIP +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPT 193

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 6/216 (2%)
Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
           L +LK L L + K  +   ++++NF SL  L + GN          +  L +L  LDLS 
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 231 NIFRGP--IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI 288
           +            +NL+ L+ L+LSYN+  S  ++ F     LE L L + RL+   +  
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 289 GLENLTFIKTLDLSFNELGQDISEILDIISACAAFELE-SLFLRGCKISGQLTNQLGLFK 347
             +NL  +K L+LS + L     ++ D + A     L+ + F +G   + Q TN L    
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG---NIQKTNSLQTLG 476
Query: 348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
            L  L LS   +S     A   L  + ++DLS+N L
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 153/379 (40%), Gaps = 39/379 (10%)
Query: 126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPS-------LKVLK 178
           D+S     L+    S L+  +        ++DL  A      +N LPS       LK L 
Sbjct: 252 DMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAH-----LNGLPSGIEGMNSLKKLV 306
Query: 179 LFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLS-SNIFRGPI 237
           L +        + +A+F SL  L + GN+         +  L +L  LDLS S+I     
Sbjct: 307 LNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDC 366
Query: 238 PD-GFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
            +   KNL  L+YL+LSYN+        F     LE L + +  L         +NL  +
Sbjct: 367 CNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLL 426
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
           + L+LS   L      +L  +       L+    +   IS   TN L +  +L  L LS 
Sbjct: 427 RVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISK--TNLLQMVGSLEILILSS 484
Query: 357 NSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKW 416
            ++      A   L ++ +LDLS+N+L G   +     L+ L   Y N  S N +I    
Sbjct: 485 CNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA----LSHLKGLYLNMASNNIRI---- 536
Query: 417 VPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIY--QDTIP 474
           +PP  L AL  +S     H P           LD + + I  I   W+  +++  +D+  
Sbjct: 537 IPPHLLPALSQQSIINLSHNP-----------LDCTCSNIHFIT--WYKENLHKLEDSEE 583
Query: 475 DCWMNWPDLRVLNLGNNKF 493
               N P LR + L + K 
Sbjct: 584 TTCANPPSLRGVKLSDVKL 602

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 31/230 (13%)
Query: 80  GNDFQGIQIPEYIGSMDNLRYLNLS--GAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVE 137
           GN F  + +P       +L +L+LS  G  F G         ++L +LDLS   +   + 
Sbjct: 338 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVIT 387
Query: 138 DISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASAN--- 194
             S   G   LEHLD    +L + S++ +       L +  L    + H     + N   
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFNGIF 441
Query: 195 --FSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDL 252
              SSL  L ++GN F +  +P     L +L FLDLS        P  F +L+SL+ L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 253 SYNQFNSTIS---DCFSNFDDLEY-----LSLGYNRLQGTISSIGLENLT 294
           S+N F S  +    C ++   L+Y     ++     LQ   SS+   NLT
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 99/230 (43%), Gaps = 31/230 (13%)
Query: 80  GNDFQGIQIPEYIGSMDNLRYLNLS--GAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVE 137
           GN F  + +P       +L +L+LS  G  F G          +L +LDLS   +   + 
Sbjct: 362 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS---FNGVIT 411
Query: 138 DISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASAN--- 194
             S   G   LEHLD    +L + S++ +       L +  L    + H     + N   
Sbjct: 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFNGIF 465
Query: 195 --FSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDL 252
              SSL  L ++GN F +  +P     L +L FLDLS        P  F +L+SL+ L++
Sbjct: 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 253 SYNQFNSTIS---DCFSNFDDLEY-----LSLGYNRLQGTISSIGLENLT 294
           S+N F S  +    C ++   L+Y     ++     LQ   SS+   NLT
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 80  GNDFQGIQIPEYIGSMDNLRYLNLS--GAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVE 137
           GN F  + +P       +L +L+LS  G  F G         ++L +LDLS   +   + 
Sbjct: 338 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVIT 387
Query: 138 DISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANF-- 195
             S   G   LEHLD    +L + S++ + +    SL+ L        H     +  F  
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL----SLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 196 -SSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY 254
            SSL  L ++GN F +  +P     L +L FLDLS        P  F +L+SL+ L+++ 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 255 NQFNSTISDCFSNFDDLEYLSLGYN 279
           NQ  S     F     L+ + L  N
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTN 528

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 7/218 (3%)
Query: 171 LPSLKVLKLFSCKLHHFAPL---ASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD 227
           +  L +LK     ++HF  L   ++ANF SL  L + GN+         +  L +L  LD
Sbjct: 294 MKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLD 353
Query: 228 LSSNIFRGP--IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285
           LS N            KNL+ L+ L+LS+N+     S  F     LE L L + RL    
Sbjct: 354 LSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINA 413
Query: 286 SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGL 345
                +NL F++ L+L++  L      +L  +       L+    +   I+   TN L  
Sbjct: 414 PQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITK--TNLLQT 471
Query: 346 FKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
             +L  L LS   +      A   L  ++++DLS+N+L
Sbjct: 472 VGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 93/215 (43%), Gaps = 24/215 (11%)
Query: 95  MDNLRYLNLS--GAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLD 152
           +  L  L+LS  G  F G         ++L +LDLS   +   +   S   G   LEHLD
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLD 107
Query: 153 TSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASAN-----FSSLNALDLSGNL 207
               +L + S++ +       L +  L    + H     + N      SSL  L ++GN 
Sbjct: 108 FQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 208 FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTIS---DC 264
           F +  +P     L +L FLDLS        P  F +L+SL+ L++S+N F S  +    C
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221
Query: 265 FSNFDDLEY-----LSLGYNRLQGTISSIGLENLT 294
            ++   L+Y     ++     LQ   SS+   NLT
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 77/166 (46%), Gaps = 24/166 (14%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
           D  KNLT+L  L+LS N    TISD    S    L+ LS   N++        L NLT +
Sbjct: 123 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLSFSSNQVTDLKP---LANLTTL 175
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
           + LD+S N++        DI        LESL     +IS      LG+  NL  L+L+ 
Sbjct: 176 ERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNG 226
Query: 357 NSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
           N +   G L      L++LT LDL+NN ++ +        LTEL  
Sbjct: 227 NQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 77/166 (46%), Gaps = 24/166 (14%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
           D  KNLT+L  L+LS N    TISD    S    L+ LS   N++        L NLT +
Sbjct: 123 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLSFSSNQVTDLKP---LANLTTL 175
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
           + LD+S N++        DI        LESL     +IS      LG+  NL  L+L+ 
Sbjct: 176 ERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNG 226
Query: 357 NSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
           N +   G L      L++LT LDL+NN ++ +        LTEL  
Sbjct: 227 NQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 220 LSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY 278
           L++L +L L+ N  +  +P+G F  LT+L+ L L  NQ  S     F    +L YL+L +
Sbjct: 84  LTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 279 NRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFEL 325
           N+LQ     +  + LT +  LDLS+N+L      + D ++      L
Sbjct: 143 NQLQSLPKGV-FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIG-LENLTF 295
           D  KNLT+L  L+LS N    TISD    S    L+ LS G       ++ +  L NLT 
Sbjct: 127 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLSFG-----NQVTDLKPLANLTT 177
Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
           ++ LD+S N++        DI        LESL     +IS      LG+  NL  L+L+
Sbjct: 178 LERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 228
Query: 356 DNSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
            N +   G L      L++LT LDL+NN ++ +        LTEL  
Sbjct: 229 GNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIG-LENLTF 295
           D  KNLT+L  L+LS N    TISD    S    L+ LS G       ++ +  L NLT 
Sbjct: 128 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLSFG-----NQVTDLKPLANLTT 178
Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
           ++ LD+S N++        DI        LESL     +IS      LG+  NL  L+L+
Sbjct: 179 LERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 229
Query: 356 DNSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
            N +   G L      L++LT LDL+NN ++ +        LTEL  
Sbjct: 230 GNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 24/166 (14%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
           D  KNLT+L  L+LS N    TISD    S    L+ L+   N++        L NLT +
Sbjct: 123 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLNFSSNQVTDLKP---LANLTTL 175
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
           + LD+S N++        DI        LESL     +IS      LG+  NL  L+L+ 
Sbjct: 176 ERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNG 226
Query: 357 NSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
           N +   G L      L++LT LDL+NN ++ +        LTEL  
Sbjct: 227 NQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 201 LDLSGNLFGKTSIPSWVFG-LSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFN 258
           LDL  N     S+P+ VF  L+ L  L L  N  +  +P+G F  LTSL YL+LS NQ  
Sbjct: 33  LDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 259 STISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIIS 318
           S  +  F     L+ L+L  N+LQ     +  + LT +K L L  N+L      + D ++
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGV-FDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 319 A 319
           +
Sbjct: 149 S 149

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIG-LENLTF 295
           D  KNLT+L  L+LS N    TISD    S    L+ L+ G       ++ +  L NLT 
Sbjct: 123 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLNFG-----NQVTDLKPLANLTT 173
Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
           ++ LD+S N++        DI        LESL     +IS      LG+  NL  L+L+
Sbjct: 174 LERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 224
Query: 356 DNSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
            N +   G L      L++LT LDL+NN ++ +        LTEL  
Sbjct: 225 GNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIG-LENLTF 295
           D  KNLT+L  L+LS N    TISD    S    L+ L+ G       ++ +  L NLT 
Sbjct: 123 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLNFG-----NQVTDLKPLANLTT 173
Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
           ++ LD+S N++        DI        LESL     +IS      LG+  NL  L+L+
Sbjct: 174 LERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 224
Query: 356 DNSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
            N +   G L      L++LT LDL+NN ++ +        LTEL  
Sbjct: 225 GNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 212 SIPSWVFG-LSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270
           ++P  VF  L +L  L L  N  +   P  F +LT L YL L YN+  S     F     
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 271 LEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELES 327
           L+ L L  N+L+  +     + LT +KTL L  N+L +      D +      +L+ 
Sbjct: 159 LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKT 298
           D F +L SL +LDLS N  +S  S  F     L+YL+L  N  Q    +    NLT ++T
Sbjct: 94  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 153
Query: 299 LDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNS 358
           L +   E   +I  I D     +  ELE   ++   +    +  L   +++H L L  + 
Sbjct: 154 LRIGNVETFSEIRRI-DFAGLTSLNELE---IKALSLRNYQSQSLKSIRDIHHLTLHLSE 209
Query: 359 VSGPLPPASGELSSLTYLDLSNNNL 383
            +  L   +  LSS+ YL+L + NL
Sbjct: 210 SAFLLEIFADILSSVRYLELRDTNL 234

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKT 298
           D F +L SL +LDLS N  +S  S  F     L+YL+L  N  Q    +    NLT ++T
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127
Query: 299 LDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNS 358
           L +   E   +I  I D     +  ELE   ++   +    +  L   +++H L L  + 
Sbjct: 128 LRIGNVETFSEIRRI-DFAGLTSLNELE---IKALSLRNYQSQSLKSIRDIHHLTLHLSE 183
Query: 359 VSGPLPPASGELSSLTYLDLSNNNL 383
            +  L   +  LSS+ YL+L + NL
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNL 208

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 145 PSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLS 204
           P+  E LD     L   SD       L  L  L L   +L   +     + + L  L L+
Sbjct: 34  PADTEKLDLQSTGLATLSD--ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 205 GNLFGKTSIPSWVFG-LSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTIS 262
            N     S+P  VF  L+ L  L L  N  +  +P G F  LT L+ L L+ NQ  S  +
Sbjct: 92  NNQLA--SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPA 148
Query: 263 DCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
             F    +L+ LSL  N+LQ ++     + L  ++T+ L  N+ 
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	790
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-138
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-38
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-78
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-76
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-70
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-70
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-64
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-32
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  427 bits (1099), Expect = e-138
 Identities = 177/747 (23%), Positives = 275/747 (36%), Gaps = 138/747 (18%)

Query: 2   GCLESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSEL-- 59
             L  E   LI  K    D  N L  W  + + C + GV C +    V  ++L    L  
Sbjct: 8   QSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSSKPLNV 64

Query: 60  -GGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIP--HQL 116
               ++ +L+ L  L  L LS +   G  +        +L  L+LS    +G +     L
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSHING-SVSG-FKCSASLTSLDLSRNSLSGPVTTLTSL 122

Query: 117 GNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKA-SDWLLVINSLPSLK 175
           G+ S L  L++S +  +   + +S     + LE LD S   +  A     ++ +    LK
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGK-VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 176 VLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRG 235
            L +   K+     +  +   +L  LD+S N F  T IP  +   S L  LD+S N   G
Sbjct: 182 HLAISGNKISGDVDV--SRCVNLEFLDVSSNNFS-TGIPF-LGDCSALQHLDISGNKLSG 237

Query: 236 PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTF 295
                    T L+ L++S NQF   I         L+YLSL  N+  G I          
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT 295

Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
           +  LDLS N                                G +    G    L +LALS
Sbjct: 296 LTGLDLSGNHF-----------------------------YGAVPPFFGSCSLLESLALS 326

Query: 356 DNSVSGPLPPAS-GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINS 414
            N+ SG LP  +  ++  L  LDLS N  +G + E    NL+                  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSA----------------- 368

Query: 415 KWVPPFQLLALRLRSCHLGPHFPSWL--HSQKHLSKLDISNTRISDIIPRWFWNSIYQDT 472
                  LL L L S +        L  + +  L +L + N   +  IP           
Sbjct: 369 ------SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS------- 415

Query: 473 IPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLV 532
                 N  +L  L+L  N  +G+IP S+G+L+ LR L L  N L G IP        L 
Sbjct: 416 ------NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469

Query: 533 ALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSG 592
            L +  N+  G IP+ +    + L  ++L +N+L G  P  I  L +L IL ++ N  SG
Sbjct: 470 TLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 593 SVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSID 652
           ++P  + +                                             +L+  +D
Sbjct: 529 NIPAELGDCR-------------------------------------------SLIW-LD 544

Query: 653 ISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGN--QISGKI 710
           ++ N F+G IP  +       S  ++ N   GK    I N    +    +GN  +  G  
Sbjct: 545 LNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600

Query: 711 PQSMSSLSFLNHLNLSDNKLVGKIPSS 737
            + ++ LS  N  N++     G    +
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPT 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  295 bits (757), Expect = 2e-89
 Identities = 128/676 (18%), Positives = 218/676 (32%), Gaps = 89/676 (13%)

Query: 73  LNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYY 132
             + D S       Q+P+ + +  N+  LNL+               S L  LD+  +  
Sbjct: 6   HEVADCSHLKLT--QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-- 59

Query: 133 ELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLAS 192
                 IS L                            LP LKVL L   +L   +    
Sbjct: 60  -----TISKLEPELC---------------------QKLPMLKVLNLQHNELSQLSDKTF 93

Query: 193 ANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDL 252
           A  ++L  L L  N   +    +      +L+ LDLS N            L +L+ L L
Sbjct: 94  AFCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152

Query: 253 SYNQFNSTISDCFSNFDD--LEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDI 310
           S N+  +  S+    F +  L+ L L  N+++          +  +  L L+  +LG  +
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSL 211

Query: 311 SEILDIISACAAFELESLFLRGCKISGQLTNQLGLFK--NLHTLALSDNSVSGPLPPASG 368
           +E   +    A   + +L L   ++S          K  NL  L LS N+++     +  
Sbjct: 212 TE--KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 369 ELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLR 428
            L  L Y  L  NN+   +       L  + +     +                    + 
Sbjct: 270 WLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRS---------------FTKQSIS 313

Query: 429 SCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNL 488
              L           K L  L++ +  I  I    F                 +L+ L+L
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-------------INLKYLSL 360

Query: 489 GNNKFTGSIPISMG----TLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGN 544
            N+  +     +        + L  LNL  N++S I    F     L  LD+G NE    
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 545 IPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSG--SVPKCINNFT 602
           +          +  + L  NK   +       + SLQ L +    L    S P       
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 603 AMATIG-SHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE 661
            +  +  S++ +  I     E    +E + L       ++N++  L        +   G 
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDL-------QHNNLARL------WKHANPGG 527

Query: 662 IPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLN 721
               +  L  L  LNL  N F     E   ++  ++ +DL  N ++       ++   L 
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 722 HLNLSDNKLVGKIPSS 737
            LNL  N +       
Sbjct: 588 SLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  289 bits (742), Expect = 2e-87
 Identities = 127/720 (17%), Positives = 233/720 (32%), Gaps = 127/720 (17%)

Query: 44  NITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNL 103
           ++  ++  LNL  ++L             L  LD+  N    +  PE    +  L+ LNL
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNL 80

Query: 104 SGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASD 163
                +          +NL  L L  +                 ++ +  +         
Sbjct: 81  QHNELSQLSDKTFAFCTNLTELHLMSNS----------------IQKIKNN--------- 115

Query: 164 WLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF---GL 220
                    +L  L L    L            +L  L LS N     ++ S        
Sbjct: 116 ---PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI--QALKSEELDIFAN 170

Query: 221 SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD---LEYLSLG 277
           S L  L+LSSN  +   P  F  +  L  L L+  Q   ++++          +  LSL 
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 278 YNRLQGTI-SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKIS 336
            ++L  T  ++      T +  LDLS+N L    ++    +      +LE  FL    I 
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP-----QLEYFFLEYNNIQ 285

Query: 337 G-------QLTN--QLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMI 387
                    L N   L L ++    ++S  S+      +   L  L +L++ +N++ G+ 
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345

Query: 388 SEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLS 447
           S + F  L  L +   + +  + +     +     ++L                    L 
Sbjct: 346 SNM-FTGLINLKYLSLSNSFTSLRT----LTNETFVSLAHSP----------------LH 384

Query: 448 KLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-GTLTS 506
            L+++  +IS I    F                  L VL+LG N+    +       L +
Sbjct: 385 ILNLTKNKISKIESDAF-------------SWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431

Query: 507 LRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF--VGNIPTWMGERFSRLRILNLRSN 564
           +  + L  N+   +    F     L  L +       V + P+        L IL+L +N
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNN 490

Query: 565 KLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFEND 624
            +  I    +  L  L+ILD+ +N L+                                 
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLA----------------------------RLWKH 522

Query: 625 YIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIG 684
                    +KG        L+ +  +++  N F         +L  L+ ++L  N+   
Sbjct: 523 ANPGGPIYFLKG--------LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 685 KIPETIGNMRSIESLDLSGNQISGKIPQSMS-SLSFLNHLNLSDNKLVGKIPSSTQLQSF 743
                  N  S++SL+L  N I+    +    +   L  L++  N       S     ++
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  246 bits (631), Expect = 1e-71
 Identities = 115/564 (20%), Positives = 197/564 (34%), Gaps = 35/564 (6%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
           EL+L  + +    N   V  K+L  LDLS N             ++NL+ L LS      
Sbjct: 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQA 159

Query: 111 WIPH--QLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIK-ASDWLLV 167
                  +   S+L  L+LS +  +++            L  L  ++V L    ++ L +
Sbjct: 160 LKSEELDIFANSSLKKLELSSN--QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 168 INSLPSLKVLKLFSCKLHHFAPLASAN--FSSLNALDLSGNLFGKTSIPSWVFG-LSDLV 224
             +  S++ L L + +L   +        +++L  LDLS N      + +  F  L  L 
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQLE 275

Query: 225 FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDC---------FSNFDDLEYLS 275
           +  L  N  +         L ++RYL+L  +    +IS           F     LE+L+
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 276 LGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKI 335
           +  N + G  S++    L  +K L LS +      +   +   + A   L  L L   KI
Sbjct: 336 MEDNDIPGIKSNM-FTGLINLKYLSLSNSFT-SLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 336 SGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS-GELSSLTYLDLSNNNLNGMISEIHFGN 394
           S   ++      +L  L L  N +   L       L ++  + LS N    +     F  
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FAL 452

Query: 395 LTELAFFYANGNSVNFKINSKWVPPFQ----LLALRLRSCHLGPHFPSWLHSQKHLSKLD 450
           +  L            K       PFQ    L  L L + ++       L   + L  LD
Sbjct: 453 VPSLQRLMLRRV--ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510

Query: 451 ISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSL 510
           + +  ++ +     W                 L +LNL +N F          L  L+ +
Sbjct: 511 LQHNNLARL-----WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 511 NLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIF 570
           +L  N L+ +    F N   L +L++ +N          G  F  L  L++R N      
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 571 PIQICHLSSLQILDVAYNRLSGSV 594
                 ++ +         LS   
Sbjct: 626 ESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  204 bits (521), Expect = 2e-56
 Identities = 98/513 (19%), Positives = 178/513 (34%), Gaps = 87/513 (16%)

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
            S    D S+ +      D  +N   +  L+L +N+L+   ++      + + +LD+ FN
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTN---ITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFN 59

Query: 305 ELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLP 364
            + +   E+   +       L+ L L+  ++S           NL  L L  NS+     
Sbjct: 60  TISKLEPELCQKLP-----MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 365 PASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLA 424
               +  +L  LDLS+N L+          L  L     + N    KI +  +   +L  
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNN----KIQA--LKSEELDI 167

Query: 425 LRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLR 484
               S                L KL++S+ +I +  P  F                  L 
Sbjct: 168 FANSS----------------LKKLELSSNQIKEFSPGCFHAI-------------GRLF 198

Query: 485 VLNLGNNKFTGSIPISMG---TLTSLRSLNLRSNRLSGIIPVPFENC--SQLVALDMGEN 539
            L L N +   S+   +      TS+R+L+L +++LS      F     + L  LD+  N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 540 EFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCIN 599
                          +L    L  N +  +F   +  L +++ L++  +    S+     
Sbjct: 259 NLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI----- 312

Query: 600 NFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSI----------LNLVR 649
                    S   +  I   SF+    +E +++       E N I          L  ++
Sbjct: 313 ---------SLASLPKIDDFSFQWLKCLEHLNM-------EDNDIPGIKSNMFTGLINLK 356

Query: 650 SIDISMNNFSGEIPMEVT----NLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQ 705
            + +S +  S       T        L  LNL+ N       +    +  +E LDL  N+
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 706 ISGKIPQSM-SSLSFLNHLNLSDNKLVGKIPSS 737
           I  ++       L  +  + LS NK +    +S
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  150 bits (381), Expect = 5e-38
 Identities = 65/382 (17%), Positives = 116/382 (30%), Gaps = 62/382 (16%)

Query: 372 SLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCH 431
           S    D S+  L  +  ++   N+T L       N +     + +    QL +L +    
Sbjct: 5   SHEVADCSHLKLTQVPDDL-PTNITVL---NLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 432 LGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNN 491
           +    P        L  L++ +  +S +  + F                 +L  L+L +N
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-------------TNLTELHLMSN 107

Query: 492 KFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGE 551
                         +L +L+L  N LS            L  L +  N+        +  
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

Query: 552 RF-SRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSH 610
              S L+ L L SN++    P     +  L  L +   +L  S+ + +    A  +I   
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI--- 224

Query: 611 HQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLK 670
                                                 R++ +S +  S         LK
Sbjct: 225 --------------------------------------RNLSLSNSQLSTTSNTTFLGLK 246

Query: 671 G--LQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDN 728
              L  L+LS+N+      ++   +  +E   L  N I      S+  L  + +LNL  +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 729 KLVGKIPSSTQLQSFGASSITG 750
                I S   L      S   
Sbjct: 307 FTKQSI-SLASLPKIDDFSFQW 327

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  263 bits (673), Expect = 4e-78
 Identities = 117/588 (19%), Positives = 181/588 (30%), Gaps = 69/588 (11%)

Query: 169 NSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDL 228
           N   S K L L    L H    +  +F  L  LDLS     +T        LS L  L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLIL 83

Query: 229 SSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI 288
           + N  +      F  L+SL+ L        S  +    +   L+ L++ +N +Q      
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 289 GLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKN 348
              NLT ++ LDLS N++       L ++       L SL L    ++            
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-SLDLSLNPMNFIQPGAFKEI-R 201

Query: 349 LHTLALSDNSVSGPLPPAS-GELSSLTYLDLSNNNLNGM-----ISEIHFGNLTELAFFY 402
           LH L L +N  S  +       L+ L    L               +     L  L    
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 403 ANGNSVNFKINSKWVPPFQLL----ALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISD 458
                +++ ++   +  F  L    +  L S  +                L++ N +   
Sbjct: 262 FRLAYLDYYLDD-IIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ 318

Query: 459 IIPRWFWNSIYQD------TIPDCWMNWPDLRVLNLGNNK--FTGSIPISMGTLTSLRSL 510
                  +                 ++ P L  L+L  N   F G    S    TSL+ L
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 511 NLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIF 570
           +L  N +  +    F    QL  LD   +         +      L  L++        F
Sbjct: 379 DLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 571 PIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEI 630
                 LSSL++L +A N    +    I                      F         
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDI----------------------FTE------- 468

Query: 631 SLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETI 690
                         L  +  +D+S        P    +L  LQ LN+SHN+F        
Sbjct: 469 --------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 691 GNMRSIESLDLSGNQISGKIPQSMSSL-SFLNHLNLSDNKLVGKIPSS 737
             + S++ LD S N I     Q +    S L  LNL+ N         
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  257 bits (659), Expect = 3e-76
 Identities = 112/669 (16%), Positives = 201/669 (30%), Gaps = 111/669 (16%)

Query: 72  HLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY 131
               LDLS N  + +       S   L+ L+LS             +LS+L  L L+G+ 
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN- 86

Query: 132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLA 191
             ++   +   +G                          L SL+ L      L       
Sbjct: 87  -PIQSLALGAFSG--------------------------LSSLQKLVAVETNLASLENFP 119

Query: 192 SANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRY-- 249
             +  +L  L+++ NL     +P +   L++L  LDLSSN  +       + L  +    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 250 --LDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL- 306
             LDLS N  N      F     L  L+L  N     +    ++ L  ++   L   E  
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 307 --GQDISEILDIISACAAFELESLFLRGCKIS-GQLTNQLGLFKNLHTLALSDNSVSGPL 363
             G         +       +E   L         + +      N+ + +L   ++    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 364 PPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLL 423
                      +L+L N         +   +L  L F    G +   +++        L 
Sbjct: 299 D--FSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSEVDLP-----SLE 350

Query: 424 ALRLRSCHLG--PHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWP 481
            L L    L               L  LD+S   +               T+   ++   
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--------------TMSSNFLGLE 396

Query: 482 DLRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
            L  L+  ++        S+  +L +L  L++            F   S L  L M  N 
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
           F  N    +      L  L+L   +L  + P     LSSLQ+L++++N            
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
             +                                            ++ +D S+N+   
Sbjct: 517 LNS--------------------------------------------LQVLDYSLNHIMT 532

Query: 661 EIPMEVTNL-KGLQSLNLSHNSFIGKIPET--IGNMRSIESLDLSGNQISGKIPQSMSSL 717
               E+ +    L  LNL+ N F         +  ++    L +   ++    P     +
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

Query: 718 SFLNHLNLS 726
             L+ LN++
Sbjct: 593 PVLS-LNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  214 bits (547), Expect = 2e-60
 Identities = 104/557 (18%), Positives = 178/557 (31%), Gaps = 86/557 (15%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
           +L    + L    N  +  LK L  L+++ N  Q  ++PEY  ++ NL +L+LS      
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 111 WIPHQLGNLSNL--MHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVI 168
                L  L  +  ++L L  S   +            L   L   +      +     I
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL-HKLTLRNN-FDSLNVMKTCI 221

Query: 169 NSLPSLKVLKLFSCKLHHFAPLASANFSSLNAL--------DLSGNLFGKTSIPSWVFGL 220
             L  L+V +L   +  +   L   + S+L  L         L+   +    I      L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 221 SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNR 280
           +++    L S          F      ++L+L   +F    +    +   L+ L+   N+
Sbjct: 282 TNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNK 336

Query: 281 LQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLT 340
                S + L +L     LDLS N L                              G  +
Sbjct: 337 GGNAFSEVDLPSLE---FLDLSRNGL---------------------------SFKGCCS 366

Query: 341 NQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
                  +L  L LS N V   +      L  L +LD  ++NL  M     F +L     
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---- 421

Query: 401 FYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDII 460
                                L+ L +   H    F    +    L  L ++     +  
Sbjct: 422 --------------------NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 461 PRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGI 520
                        PD +    +L  L+L   +     P +  +L+SL+ LN+  N    +
Sbjct: 462 L------------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 521 IPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQ--ICHLS 578
              P++  + L  LD   N  + +    +    S L  LNL  N        Q  +  + 
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569

Query: 579 SLQILDVAYNRLSGSVP 595
             + L V   R+  + P
Sbjct: 570 DQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (284), Expect = 4e-26
 Identities = 52/324 (16%), Positives = 104/324 (32%), Gaps = 72/324 (22%)

Query: 435 HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT 494
             P  L        LD+S   +  +    F++              P+L+VL+L   +  
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSF-------------PELQVLDLSRCEIQ 65

Query: 495 GSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFS 554
                +  +L+ L +L L  N +  +    F   S L  L   E          +G    
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LK 124

Query: 555 RLRILNLRSNKLHGI-FPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQV 613
            L+ LN+  N +     P    +L++L+ LD++ N++       +               
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH----------- 173

Query: 614 KAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQ 673
                                         +  L  S+D+S+N  +   P     ++ L 
Sbjct: 174 -----------------------------QMPLLNLSLDLSLNPMNFIQPGAFKEIR-LH 203

Query: 674 SLNLSHNSFIGKIPET-IGNMRSIESLDLSGNQISGKIP---------QSMSSLSF---- 719
            L L +N     + +T I  +  +E   L   +   +           + + +L+     
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 720 LNHLNLSDNKLVGKIPSSTQLQSF 743
           L +L+   + ++      T + SF
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSF 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  261 bits (669), Expect = 2e-77
 Identities = 106/718 (14%), Positives = 197/718 (27%), Gaps = 157/718 (21%)

Query: 22  SNHLASWIGDVDCCEWG---GVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDL 78
           +   A+W  + +   WG   GV  N+  G V  L+LE     G++  A+  L  L +L L
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112

Query: 79  SGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVED 138
             +  +  +                         P  +    +                 
Sbjct: 113 GSHGEKVNERLF---------------------GPKGISANMSDEQKQKMRM-------- 143

Query: 139 ISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSL 198
                                K             L    + S         +S      
Sbjct: 144 ------------------HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 199 NALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFN 258
             +    N    T +   V  L+ L    + ++ F            +    +  Y Q  
Sbjct: 186 TQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQY 238

Query: 259 STISDCFSNFDDLEYLSLGYNRLQGTI-SSIGLENLTFIKTLDLSFNEL---GQDISEIL 314
            T    + N  DL  + +        + + +    L  ++ ++++ N      Q   +  
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--ALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 315 DIISACAAFELESLFLRGCKI-SGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSL 373
            +  A    +++ +++    + +  +   L   K L  L    N + G   PA G    L
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKL 355

Query: 374 TYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLG 433
             L+L+ N +  + +    G   ++       N    K+    +P         +S    
Sbjct: 356 ASLNLAYNQITEIPANF-CGFTEQVENLSFAHN----KLKY--IPNI----FDAKSV--- 401

Query: 434 PHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKF 493
                       +S +D S   I  +  + F        +        ++  +NL NN+ 
Sbjct: 402 ----------SVMSAIDFSYNEIGSVDGKNFDP------LDPTPFKGINVSSINLSNNQI 445

Query: 494 TGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERF 553
           +        T + L S+NL  N L+ I                     + +         
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPK-----------------NSLKDENENFK-NT 487

Query: 554 SRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQ 612
             L  ++LR NKL  +    +   L  L  +D++YN  S   P    N + +        
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL-------- 538

Query: 613 VKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGL 672
                                             +    D   N    E P  +T    L
Sbjct: 539 ------------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 673 QSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKL 730
             L +  N  I K+ E I    +I  LD+  N         +          L  +K 
Sbjct: 569 TQLQIGSND-IRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  228 bits (584), Expect = 2e-65
 Identities = 79/588 (13%), Positives = 170/588 (28%), Gaps = 83/588 (14%)

Query: 194 NFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGP----IPDGFKNLTSLRY 249
           +   +  L L G       +P  +  L++L  L L S+  +       P G     S   
Sbjct: 79  SNGRVTGLSLEGFGA-SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 250 LDLSYNQFNSTI--SDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELG 307
                  +  T    D   +F DL    +  +  Q +I             +    N + 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLKDTQIGQLSNNIT 196

Query: 308 QDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS 367
                ++ +        L   ++              + +                    
Sbjct: 197 FVSKAVMRLTK------LRQFYMGNSPFVA-----ENICEAWENENSEYAQQYKTEDLKW 245

Query: 368 GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRL 427
             L  LT +++ N      +       L E+       N              + ++   
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACN--------------RGISGE- 289

Query: 428 RSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLN 487
                     +     + +  + I    +                +         L +L 
Sbjct: 290 -QLKDDWQALADAPVGEKIQIIYIGYNNLKTF------------PVETSLQKMKKLGMLE 336

Query: 488 LGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPT 547
              N+  G +P + G+   L SLNL  N+++ I         Q+  L    N+       
Sbjct: 337 CLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395

Query: 548 WMGERFSRLRILNLRSNKLHGI-------FPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
           +  +  S +  ++   N++  +                ++  ++++ N++S    +  + 
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
            + +++I            +   + + E     +K     + +   L  SID+  N  + 
Sbjct: 456 GSPLSSI------------NLMGNMLTEIPKNSLKDENENFKNTYLL-TSIDLRFNKLTK 502

Query: 661 EIP-MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESL------DLSGNQISGKIPQS 713
                  T L  L  ++LS+NSF  K P    N  +++        D  GN+   + P+ 
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 714 MSSLSFLNHLNLSDNKLVGKIPSS--TQLQSFGASSITGNDLCGAPLS 759
           ++    L  L +  N +   +       +       I  N      LS
Sbjct: 562 ITLCPSLTQLQIGSNDIRK-VNEKITPNISVL---DIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  214 bits (548), Expect = 2e-60
 Identities = 72/558 (12%), Positives = 168/558 (30%), Gaps = 85/558 (15%)

Query: 50  LELNLERSELGGKINPALVDLKHLNLLDLS-GNDFQGIQIPEYIGSMDNLRYLNLSGAGF 108
            +    R                 +L+     +D Q   I +          +       
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 109 AGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWL-LV 167
              +   +  L+ L    +  S               ++ E  +  + +  +      L 
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSP----------FVAENICEAWENENSEYAQQYKTEDLK 244

Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGN-------LFGKTSIPSWVFGL 220
            ++L  L  +++++C      P        +  ++++ N       L       +     
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 221 SDLVFLDLSSN-IFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
             +  + +  N +   P+    + +  L  L+  YNQ    +   F +   L  L+L YN
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYN 363

Query: 280 RLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQL 339
           ++    ++        ++ L  + N+L      I +I  A +   + ++     +I    
Sbjct: 364 QITEIPANF-CGFTEQVENLSFAHNKL----KYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 340 TNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
                                 PL P   +  +++ ++LSNN ++    E+ F   + L+
Sbjct: 419 GKNFD-----------------PLDPTPFKGINVSSINLSNNQISKFPKEL-FSTGSPLS 460

Query: 400 FFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
                GN                  L     +          +   L+ +D+   +++ +
Sbjct: 461 SINLMGNM-----------------LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503

Query: 460 IPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLR------ 513
              +                 P L  ++L  N F+   P      ++L+   +R      
Sbjct: 504 SDDFRAT------------TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 514 SNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQ 573
            NR     P     C  L  L +G N+    +   +      + +L+++ N    I    
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI---TPNISVLDIKDNPNISIDLSY 606

Query: 574 ICHLSSLQILDVAYNRLS 591
           +C      +  + Y++  
Sbjct: 607 VCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  159 bits (403), Expect = 6e-41
 Identities = 64/452 (14%), Positives = 124/452 (27%), Gaps = 89/452 (19%)

Query: 333 CKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHF 392
                Q    L     +  L+L     SG +P A G+L+ L  L L ++           
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 393 GNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDIS 452
             ++                             +    H    F  +   +     +   
Sbjct: 127 KGISANMS---------------------DEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165

Query: 453 NTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNL 512
                               I            +   +N  T  +  ++  LT LR   +
Sbjct: 166 INSDPQQKS-----------IKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYM 213

Query: 513 RSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPI 572
            ++                        +               L  + + +       P 
Sbjct: 214 GNSPFVAENICEAWENENS-----EYAQQYKTEDLKWD-NLKDLTDVEVYNCPNLTKLPT 267

Query: 573 QICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISL 632
            +  L  +Q+++VA NR   S  +  +++ A+A      ++                   
Sbjct: 268 FLKALPEMQLINVACNRGI-SGEQLKDDWQALADAPVGEKI------------------- 307

Query: 633 VMKGFMVEYNSILNLVRSIDISMNNF-SGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIG 691
                           + I I  NN  +  +   +  +K L  L   +N   GK+P   G
Sbjct: 308 ----------------QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FG 350

Query: 692 NMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGA------ 745
           +   + SL+L+ NQI+            + +L+ + NKL   IP+    +S         
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDF 409

Query: 746 -----SSITGNDLCGAPLSNCTEKNVLALCLS 772
                 S+ G +      +     NV ++ LS
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  122 bits (309), Expect = 3e-29
 Identities = 36/355 (10%), Positives = 85/355 (23%), Gaps = 79/355 (22%)

Query: 398 LAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRIS 457
           L   +   N  N+        P             G      L+S   ++ L +     S
Sbjct: 35  LKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGAS 94

Query: 458 DIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTG----SIPISMGTLTSLRSLNLR 513
             +P                    +L VL LG++          P  +    S       
Sbjct: 95  GRVPDAIGQL-------------TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 514 SNRLSGIIP--VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFP 571
                       P E+ S L+   +  +    +I         +   +   SN +  +  
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNITFV-S 199

Query: 572 IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEIS 631
             +  L+ L+   +  +                                           
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENI------------------------------------ 223

Query: 632 LVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIG 691
                             + +           ++  NLK L  + + +   + K+P  + 
Sbjct: 224 -------------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 692 NMRSIESLDLSGNQI--------SGKIPQSMSSLSFLNHLNLSDNKL-VGKIPSS 737
            +  ++ ++++ N+           +          +  + +  N L    + +S
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.8 bits (244), Expect = 3e-21
 Identities = 30/284 (10%), Positives = 81/284 (28%), Gaps = 63/284 (22%)

Query: 479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGE 538
           NW   + L++    +     +S+ +   +  L+L     SG +P      ++L  L +G 
Sbjct: 59  NWNFNKELDM----WGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGS 114

Query: 539 NEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598
           +    N   +  +  S       +           + +       D+  + ++       
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS------ 168

Query: 599 NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNF 658
           +                                      + + + I      I    NN 
Sbjct: 169 DPQQ---------------------------------KSIKKSSRITLKDTQIGQLSNNI 195

Query: 659 SGEIPMEVTNLKGLQSLNLSHNSFIGK-------------------IPETIGNMRSIESL 699
           +  +   V  L  L+   + ++ F+ +                         N++ +  +
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 700 DLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSF 743
           ++       K+P  + +L  +  +N++ N+ +         Q+ 
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 16/140 (11%), Positives = 44/140 (31%), Gaps = 9/140 (6%)

Query: 635 KGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMR 694
             ++ +Y ++  +  +++    +  G       N     + N   + +  +   ++ +  
Sbjct: 26  AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANW----NFNKELDMWGAQPGVSLNSNG 81

Query: 695 SIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-----TQLQSFGASSIT 749
            +  L L G   SG++P ++  L+ L  L L  +              +   S       
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 750 GNDLCGAPLSNCTEKNVLAL 769
                   +     ++   L
Sbjct: 142 RMHYQKTFVDYDPREDFSDL 161

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  233 bits (598), Expect = 1e-70
 Identities = 86/329 (26%), Positives = 128/329 (38%), Gaps = 61/329 (18%)

Query: 437 PSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN-NKFTG 495
                    ++ LD+S   +    P           IP    N P L  L +G  N   G
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYP-----------IPSSLANLPYLNFLYIGGINNLVG 91

Query: 496 SIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555
            IP ++  LT L  L +    +SG IP        LV LD   N   G +P  +      
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPN 150

Query: 556 LRILNLRSNKLHGIFPIQICHLSSL-QILDVAYNRLSGSVPKCINNFTAMATIGSHHQVK 614
           L  +    N++ G  P      S L   + ++ NRL+G +P    N              
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------------- 196

Query: 615 AIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQS 674
                                         LNL   +D+S N   G+  +   + K  Q 
Sbjct: 197 ------------------------------LNLAF-VDLSRNMLEGDASVLFGSDKNTQK 225

Query: 675 LNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKI 734
           ++L+ NS    + + +G  +++  LDL  N+I G +PQ ++ L FL+ LN+S N L G+I
Sbjct: 226 IHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 735 PSSTQLQSFGASSITGND-LCGAPLSNCT 762
           P    LQ F  S+   N  LCG+PL  CT
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (390), Expect = 1e-41
 Identities = 70/354 (19%), Positives = 123/354 (34%), Gaps = 76/354 (21%)

Query: 226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNST--ISDCFSNFDDLEYLSL-GYNRLQ 282
            D  +  + G + D       +  LDLS         I    +N   L +L + G N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 283 GTI-SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTN 341
           G I  +I    LT +  L ++   +                             SG + +
Sbjct: 91  GPIPPAIA--KLTQLHYLYITHTNV-----------------------------SGAIPD 119

Query: 342 QLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFF 401
            L   K L TL  S N++SG LPP+   L +L  +    N ++G I +  +G+ ++L   
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKL--- 175

Query: 402 YANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIP 461
                                 ++ +    L    P    +  +L+ +D+S   +     
Sbjct: 176 --------------------FTSMTISRNRLTGKIPPTF-ANLNLAFVDLSRNMLEGDAS 214

Query: 462 RWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGII 521
             F +               + + ++L  N     +   +G   +L  L+LR+NR+ G +
Sbjct: 215 VLFGSDK-------------NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL 260

Query: 522 PVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQIC 575
           P        L +L++  N   G IP   G    R  +    +NK     P+  C
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (390), Expect = 1e-41
 Identities = 60/277 (21%), Positives = 113/277 (40%), Gaps = 47/277 (16%)

Query: 325 LESLFLRGCKISGQLT--NQLGLFKNLHTLALSD-NSVSGPLPPASGELSSLTYLDLSNN 381
           + +L L G  +       + L     L+ L +   N++ GP+PPA  +L+ L YL +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 382 NLNGMI-SEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWL 440
           N++G I   +    +  L     + N+++  +                        P  +
Sbjct: 112 NVSGAIPDFL--SQIKTLVTLDFSYNALSGTL------------------------PPSI 145

Query: 441 HSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDL-RVLNLGNNKFTGSIPI 499
            S  +L  +     RIS               IPD + ++  L   + +  N+ TG IP 
Sbjct: 146 SSLPNLVGITFDGNRISG-------------AIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 500 SMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRIL 559
           +   L +L  ++L  N L G   V F +      + + +N    ++          L  L
Sbjct: 193 TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGL 249

Query: 560 NLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK 596
           +LR+N+++G  P  +  L  L  L+V++N L G +P+
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  147 bits (373), Expect = 2e-39
 Identities = 69/329 (20%), Positives = 119/329 (36%), Gaps = 80/329 (24%)

Query: 3   CLESERVALIKLKQDFKDPSNHLASWIGDVDCCE--WGGVVCNNIT--GHVLELNLERSE 58
           C   ++ AL+++K+D  +P+  L+SW+   DCC   W GV+C+  T    V  L+L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 59  LG---------------------------GKINPALVDLKHLNLLDLSGNDFQGIQIPEY 91
           L                            G I PA+  L  L+ L ++  +  G  IP++
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDF 120

Query: 92  IGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGP------ 145
           +  +  L  L+ S    +G +P  + +L NL+ +   G+           ++G       
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR----------ISGAIPDSYG 170

Query: 146 ---SLLEHLDTSDVDLIKASDWLLVINSL----P------SLKVLKLFSCKLHHFAPLAS 192
               L   +  S              N L    P      +L  + L    L   A +  
Sbjct: 171 SFSKLFTSMTISR-------------NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF 217

Query: 193 ANFSSLNALDLSGNLF-GKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD 251
            +  +   + L+ N       +   V    +L  LDL +N   G +P G   L  L  L+
Sbjct: 218 GSDKNTQKIHLAKNSLAF--DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 252 LSYNQFNSTISDCFSNFDDLEYLSLGYNR 280
           +S+N     I     N    +  +   N+
Sbjct: 275 VSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  139 bits (352), Expect = 1e-36
 Identities = 63/245 (25%), Positives = 98/245 (40%), Gaps = 18/245 (7%)

Query: 168 INSLPSLKVLKLFSCKLHHFAPLASA--NFSSLNALDLSG--NLFGKTSIPSWVFGLSDL 223
                 +  L L    L    P+ S+  N   LN L + G  NL G   IP  +  L+ L
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG--PIPPAIAKLTQL 103

Query: 224 VFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQG 283
            +L ++     G IPD    + +L  LD SYN  + T+    S+  +L  ++   NR+ G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 284 TI-SSIG-LENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTN 341
            I  S G    L    ++ +S N L     +I    +      L  + L    + G  + 
Sbjct: 164 AIPDSYGSFSKL--FTSMTISRNRL---TGKIPPTFANL---NLAFVDLSRNMLEGDASV 215

Query: 342 QLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFF 401
             G  KN   + L+ NS++  L    G   +L  LDL NN + G + +     L  L   
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSL 273

Query: 402 YANGN 406
             + N
Sbjct: 274 NVSFN 278

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  124 bits (315), Expect = 1e-31
 Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 49/208 (23%)

Query: 534 LDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPI--QICHLSSLQILDVA-YNRL 590
            D     ++G +      +  R+  L+L    L   +PI   + +L  L  L +   N L
Sbjct: 31  TDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 591 SGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRS 650
            G +P  I   T                                            L   
Sbjct: 90  VGPIPPAIAKLT-------------------------------------------QL-HY 105

Query: 651 IDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI 710
           + I+  N SG IP  ++ +K L +L+ S+N+  G +P +I ++ ++  +   GN+ISG I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 711 PQSMSSLSFL-NHLNLSDNKLVGKIPSS 737
           P S  S S L   + +S N+L GKIP +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.5 bits (210), Expect = 6e-18
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 650 SIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIG--KIPETIGNMRSIESLDLSG-NQI 706
           + D     + G +    T    + +L+LS  +      IP ++ N+  +  L + G N +
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 707 SGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS----TQLQSFGASSITGNDLCG---APLS 759
            G IP +++ L+ L++L ++   + G IP        L +      + N L G     +S
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL---DFSYNALSGTLPPSIS 146

Query: 760 NCTEKNVLAL 769
           +      +  
Sbjct: 147 SLPNLVGITF 156

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  240 bits (614), Expect = 9e-70
 Identities = 103/569 (18%), Positives = 182/569 (31%), Gaps = 74/569 (13%)

Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
           L +L  L L  C+++        +   L+ L L+ N        + + G   L  L    
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL-IFMAETALSGPKALKHLFFIQ 114

Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI-- 288
                       N  +L  L L  N  +S         + L+ L    N +         
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 289 GLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGL--F 346
            L+  T + +L+L+ N++        D          +SL   G +    +   L     
Sbjct: 175 SLQQATNL-SLNLNGNDIAGIEPGAFDSAV------FQSLNFGGTQNLLVIFKGLKNSTI 227

Query: 347 KNLHTLALSDNSVSG--PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYAN 404
           ++L      D       P         S+  ++L  +    + S   F   + L      
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLT 286

Query: 405 GNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDIS-NTRISDIIPRW 463
              ++ ++ S  V    L  L L +            +   L+ L I  NT+  ++    
Sbjct: 287 ATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 464 FWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGS--IPISMGTLTSLRSLNLRSNRLSGII 521
             N               +LR L+L ++    S    + +  L+ L+SLNL  N    + 
Sbjct: 346 LENL-------------ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 522 PVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQ 581
              F+ C QL  LD+              +    L++LNL  + L          L +LQ
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452

Query: 582 ILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEY 641
            L++  N       +  N+                                         
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQT-------------------------------------- 474

Query: 642 NSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDL 701
              L  +  + +S  + S       T+LK +  ++LSHN       E + +++ I  L+L
Sbjct: 475 ---LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNL 530

Query: 702 SGNQISGKIPQSMSSLSFLNHLNLSDNKL 730
           + N IS  +P  +  LS    +NL  N L
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  227 bits (580), Expect = 5e-65
 Identities = 96/554 (17%), Positives = 188/554 (33%), Gaps = 77/554 (13%)

Query: 195 FSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLS 253
            +S   L+ S N+    +I +  F  L +L FLDL+         D F++   L  L L+
Sbjct: 32  PNSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 254 YNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEI 313
            N          S    L++L      +   I  I L N   +++L L  N +       
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 314 LDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLH--TLALSDNSVSGPLPPASGELS 371
                      L+ L  +   I       +   +     +L L+ N ++G + P + + +
Sbjct: 149 GFPTEK-----LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSA 202

Query: 372 SLTYLDLSNNNLNGM-ISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
               L+        +    +    +  L                                
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE--------------------- 241

Query: 431 HLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN 490
            + P     L  +  +  +++      +I    F               +  L+ L+L  
Sbjct: 242 DISPAVFEGL-CEMSVESINLQKHYFFNISSNTFHC-------------FSGLQELDLTA 287

Query: 491 NKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMG 550
              +  +P  +  L++L+ L L +N+   +  +   N   L  L +  N     + T   
Sbjct: 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 551 ERFSRLRILNLRSNKLHGI--FPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIG 608
           E    LR L+L  + +       +Q+ +LS LQ L+++YN       +       +  + 
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 609 -SHHQVKAI-YHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV 666
            +  ++K     + F+N                     L+L++ +++S +          
Sbjct: 407 LAFTRLKVKDAQSPFQN---------------------LHLLKVLNLSHSLLDISSEQLF 445

Query: 667 TNLKGLQSLNLSHNSF---IGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHL 723
             L  LQ LNL  N F     +   ++  +  +E L LS   +S     + +SL  +NH+
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 724 NLSDNKLVGKIPSS 737
           +LS N+L      +
Sbjct: 506 DLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  222 bits (568), Expect = 2e-63
 Identities = 106/562 (18%), Positives = 178/562 (31%), Gaps = 41/562 (7%)

Query: 44  NITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNL 103
            +      L    + L    N     L +L  LDL+      I   +   S   L  L L
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVL 88

Query: 104 SGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASD 163
           +           L     L HL    +   +   D   L     LE L      +     
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTG--ISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 164 WLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLN--ALDLSGNLFGKTSIPSWVFGLS 221
                     LKVL   +  +H+ +    ++       +L+L+GN      I    F  +
Sbjct: 147 P--KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI--AGIEPGAFDSA 202

Query: 222 DLVFLDLSSNIFRGPIPDGFKN--LTSLRYLDLSYNQFNSTISDCFSNFDD--LEYLSLG 277
               L+         I  G KN  + SL                 F    +  +E ++L 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 278 YNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISG 337
            +      S+      + ++ LDL+       +SE+   +   +   L+ L L   K   
Sbjct: 263 KHYFFNISSNT-FHCFSGLQELDLTAT----HLSELPSGLVGLST--LKKLVLSANKFEN 315

Query: 338 QLTNQLGLFKNLHTLALSDNSVSGPLPPAS-GELSSLTYLDLSNNNLNGM-ISEIHFGNL 395
                   F +L  L++  N+    L       L +L  LDLS++++       +   NL
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 396 TELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHL-GPHFPSWLHSQKHLSKLDISNT 454
           + L     + N         +    QL  L L    L      S   +   L  L++S++
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 455 RISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT---LTSLRSLN 511
            +     + F                P L+ LNL  N F         +   L  L  L 
Sbjct: 436 LLDISSEQLFDGL-------------PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

Query: 512 LRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFP 571
           L    LS I    F +   +  +D+  N    +    +     +   LNL SN +  I P
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH--LKGIYLNLASNHISIILP 540

Query: 572 IQICHLSSLQILDVAYNRLSGS 593
             +  LS  + +++  N L  +
Sbjct: 541 SLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  182 bits (465), Expect = 2e-49
 Identities = 89/543 (16%), Positives = 155/543 (28%), Gaps = 144/543 (26%)

Query: 201 LDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNST 260
            +          IP  +   +    L+ S N+        F  L +L +LDL+  Q    
Sbjct: 17  YNCENLGL--NEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 261 ISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISAC 320
             D F +   L+ L L  N L   ++   L     +K L      +              
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGIS------------- 118

Query: 321 AAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSN 380
               ++ + L   K              L +L L  N +S    P       L  LD  N
Sbjct: 119 ---SIDFIPLHNQK-------------TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162

Query: 381 NNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWL 440
           N ++  +S+    +L +                         L+L L    +        
Sbjct: 163 NAIHY-LSKEDMSSLQQA----------------------TNLSLNLNGNDIA-GIEPGA 198

Query: 441 HSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPIS 500
                   L+   T+   +I +   NS               L +    +       P  
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNS-----------TIQSLWLGTFEDMDDEDISPAV 247

Query: 501 MGTL--TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRI 558
              L   S+ S+NL+ +    I    F   S                          L+ 
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFS-------------------------GLQE 282

Query: 559 LNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYH 618
           L+L +  L  + P  +  LS+L+ L ++ N+                          +  
Sbjct: 283 LDLTATHLSEL-PSGLVGLSTLKKLVLSANKFEN-----------------------LCQ 318

Query: 619 ASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNL 677
            S  N                        +  + I  N    E+      NL+ L+ L+L
Sbjct: 319 ISASN---------------------FPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

Query: 678 SHN--SFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIP 735
           SH+           + N+  ++SL+LS N+      ++      L  L+L+  +L  K  
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 736 SST 738
            S 
Sbjct: 418 QSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  143 bits (362), Expect = 6e-36
 Identities = 69/407 (16%), Positives = 128/407 (31%), Gaps = 70/407 (17%)

Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
            L  +   L  S N +          L +LT+LDL+   +  +  +  F +         
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQH------- 81

Query: 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRW 463
                            +L  L L +  L     + L   K L  L    T IS I    
Sbjct: 82  -----------------RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124

Query: 464 FWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPV 523
             N                L  L LG+N  +            L+ L+ ++N +  +   
Sbjct: 125 LHNQ-------------KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

Query: 524 PFENCSQL--VALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFP--IQICHLSS 579
              +  Q   ++L++  N+  G  P       +  + LN    +   +    ++   + S
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 580 LQILDVAYNRLSGSVPKCINNFTAMATIG---SHHQVKAIYHASFENDYIVEEISLVMKG 636
           L +            P        M+        H    I   +F               
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC------------- 276

Query: 637 FMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSI 696
                    + ++ +D++  + S E+P  +  L  L+ L LS N F      +  N  S+
Sbjct: 277 --------FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 697 ESLDLSGNQISGKI-PQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQS 742
             L + GN    ++    + +L  L  L+LS + +      + QL++
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (257), Expect = 8e-23
 Identities = 46/212 (21%), Positives = 73/212 (34%), Gaps = 27/212 (12%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
            LNL  +E       A  +   L LLDL+    +         ++  L+ LNLS +    
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 111 WIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINS 170
                   L  L HL+L G++                                    + +
Sbjct: 440 SSEQLFDGLPALQHLNLQGNH-------FPKGNIQK------------------TNSLQT 474

Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
           L  L++L L  C L      A  +   +N +DLS N    TS           ++L+L+S
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL--TSSSIEALSHLKGIYLNLAS 532

Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTIS 262
           N     +P     L+  R ++L  N  + T S
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDCTCS 564

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 95.5 bits (238), Expect = 2e-20
 Identities = 47/297 (15%), Positives = 85/297 (28%), Gaps = 57/297 (19%)

Query: 484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVG 543
           +  N  N      IP ++    S   L    N L  I    F     L  LD+   +   
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 544 NIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTA 603
                      RL  L L +N L  +    +    +L+ L      +S      ++N   
Sbjct: 72  IHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 604 MATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIP 663
                                                       + S+ +  N+ S    
Sbjct: 131 --------------------------------------------LESLYLGSNHISSIKL 146

Query: 664 MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIE--SLDLSGNQISGKIPQSMSSLSFLN 721
            +    + L+ L+  +N+      E + +++     SL+L+GN I+G I       +   
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQ 205

Query: 722 HLNLSDNKLVGKIPSS------TQLQSFGASSITGNDLCGAPLSNCTEKNVLALCLS 772
            LN    + +  I           L       +   D+  A      E +V ++ L 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  236 bits (603), Expect = 2e-66
 Identities = 93/603 (15%), Positives = 182/603 (30%), Gaps = 73/603 (12%)

Query: 13  KLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNIT--GHVLELNLERSELGGKINPALVDL 70
           +      + + H  +W  + +   WG     ++   G V  L+L      G++  A+  L
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL 346

Query: 71  KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGS 130
             L +L    +             +               +    L     L   DL   
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL-- 404

Query: 131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVI----NSLPSLKVLKLFSCKLHH 186
             +  +     +        +   D  +   ++ +  I      L  L+++   +    +
Sbjct: 405 --QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462

Query: 187 FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTS 246
                    ++ +      N             L DL  ++L +      +PD   +L  
Sbjct: 463 DNIAVDWEDANSDYAKQYEN------EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 247 LRYLDLSYNQFNS---------TISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIK 297
           L+ L+++ N+  S          ++D       ++   +GYN L+   +S  L+ +  + 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 298 TLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDN 357
            LD   N++       L+         L  L L   +I     +       +  L  S N
Sbjct: 577 LLDCVHNKV-----RHLEAFGTNVK--LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629

Query: 358 SVSG-PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKW 416
            +   P    +  +  +  +D S N +      I   ++ +                   
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI-SCSMDDYKG---------------- 672

Query: 417 VPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDC 476
                   + L    +         +   +S + +SN  ++ I                 
Sbjct: 673 ---INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP------KDGN 723

Query: 477 WMNWPDLRVLNLGNNKFTGSIP--ISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVAL 534
           + N   L  ++L  NK T S+       TL  L ++++  N  S   P    N SQL A 
Sbjct: 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781

Query: 535 ------DMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYN 588
                 D   N  +   PT +      L  L + SN +  +          L ILD+A N
Sbjct: 782 GIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGSNDIRKVDE---KLTPQLYILDIADN 837

Query: 589 RLS 591
              
Sbjct: 838 PNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  219 bits (560), Expect = 1e-60
 Identities = 81/644 (12%), Positives = 175/644 (27%), Gaps = 106/644 (16%)

Query: 82  DFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISW 141
           D  G Q    + +   +  L+L+G G  G +P  +G L+ L  L        +       
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 142 LAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNAL 201
                 +       + +     +L     L    +L+    +     P+   +  SL   
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 202 DLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTI 261
            +       T I   +  L+ L  +  +++ F                 +  Y +     
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENE 483

Query: 262 SDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACA 321
              +SN  DL  + L        +    L +L  +++L+++ N          D      
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 322 AF----ELESLFLRGCKISG-QLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYL 376
                 +++  ++    +     +  L     L  L    N V      A G    LT L
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDL 600

Query: 377 DLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHF 436
            L  N +  +  +       ++     + N    K+    +P                  
Sbjct: 601 KLDYNQIEEIPEDF-CAFTDQVEGLGFSHN----KLKY--IPN----------------- 636

Query: 437 PSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGS 496
                S   +  +D S  +I                         +   + L  N+    
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNIS--------CSMDDYKGINASTVTLSYNEIQKF 688

Query: 497 IPISMGTLTSLRSLNLRSNRLSGI-------IPVPFENCSQLVALDMGENEFVGNIPTWM 549
                 T + + ++ L +N ++ I           ++N   L  +D+  N+       + 
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748

Query: 550 GERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAY------NRLSGSVPKCINNFTA 603
                 L  +++  N      P Q  + S L+   + +      NR+    P  I    +
Sbjct: 749 ATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 604 MATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIP 663
           +                                              + I  N+   ++ 
Sbjct: 808 L--------------------------------------------IQLQIGSNDIR-KVD 822

Query: 664 MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS 707
            ++     L  L+++ N  I     ++          L  ++  
Sbjct: 823 EKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  205 bits (524), Expect = 7e-56
 Identities = 77/564 (13%), Positives = 167/564 (29%), Gaps = 53/564 (9%)

Query: 226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285
            +   +++         N   +  L L+       + D      +L+ LS G +    + 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 286 SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGL 345
              G E LT   + +             LD        +L    +        +     +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 346 FKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG 405
                 +    N ++  +  A   L+ L  +  +N+        + + +         + 
Sbjct: 424 SLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS------DY 476

Query: 406 NSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW 465
                     W     L  + L +C      P +L+    L  L+I+  R          
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

Query: 466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFTG-SIPISMGTLTSLRSLNLRSNRLSGIIPVP 524
            +     + D     P +++  +G N         S+  +  L  L+   N++   +   
Sbjct: 537 WT----RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590

Query: 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGI-FPIQICHLSSLQIL 583
           F    +L  L +  N+    IP        ++  L    NKL  I        +  +  +
Sbjct: 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649

Query: 584 DVAYNRLSGSVPKCINNFTAMATIG------SHHQVKAIYHASFENDYIVEEISLVMKGF 637
           D +YN++         +      I       S+++++      F     +  I L     
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL----- 704

Query: 638 MVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETI--GNMRS 695
               N + ++         N          N   L +++L  N  +  + +      +  
Sbjct: 705 --SNNLMTSI-------PENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPY 754

Query: 696 IESLDLSGNQISGKIPQSMSSLSFLNHLNL------SDNKLVGKIPSS----TQLQSFGA 745
           + ++D+S N  S   P    + S L    +        N+++ + P+       L     
Sbjct: 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL-- 811

Query: 746 SSITGNDLCGAPLSNCTEKNVLAL 769
             I  ND+         +  +L +
Sbjct: 812 -QIGSNDIRKVDEKLTPQLYILDI 834

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  193 bits (493), Expect = 8e-52
 Identities = 81/572 (14%), Positives = 160/572 (27%), Gaps = 160/572 (27%)

Query: 51  ELNLERSELGGKIN------PALVDLKHLNLLDLSGNDFQGI------------------ 86
            ++L+ +++G   N       A+  L  L ++  + + F                     
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 87  QIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPS 146
                  ++ +L  + L        +P  L +L  L  L+++                  
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC----------------- 524

Query: 147 LLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGN 206
                                 N   S   LK    +L             +    +  N
Sbjct: 525 ----------------------NRGISAAQLKADWTRL----ADDEDTGPKIQIFYMGYN 558

Query: 207 LFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFS 266
              +    + +  +  L  LD   N  R    + F     L  L L YNQ      D  +
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCA 616

Query: 267 NFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELE 326
             D +E L   +N+L+   +    +++  + ++D S+N++G +   I   +         
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 327 SLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS-------GPLPPASGELSSLTYLDLS 379
           ++ L   +I    T        + T+ LS+N ++        P          LT +DL 
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 380 NNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSW 439
            N L  +  +     L                                            
Sbjct: 737 FNKLTSLSDDFRATTLP------------------------------------------- 753

Query: 440 LHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPI 499
                +LS +D+S    S              + P   +N   L+   + +         
Sbjct: 754 -----YLSNMDVSYNCFS--------------SFPTQPLNSSQLKAFGIRHQ-------- 786

Query: 500 SMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRIL 559
                      +   NR+    P     C  L+ L +G N+    +   +     +L IL
Sbjct: 787 ----------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL---TPQLYIL 832

Query: 560 NLRSNKLHGIFPIQICHLSSLQILDVAYNRLS 591
           ++  N    I    +C      +  + Y++  
Sbjct: 833 DIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  114 bits (287), Expect = 3e-26
 Identities = 36/295 (12%), Positives = 86/295 (29%), Gaps = 30/295 (10%)

Query: 461 PRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGI 520
             W + S   +      +NW      N   + +     + +     +  L+L      G 
Sbjct: 284 KNWRYYSGTINNTIHS-LNWN----FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338

Query: 521 IPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSL 580
           +P      ++L  L  G +    +   +  E  +       +         + + +   L
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 581 QILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVE 640
            + D+  + ++       N         S   +K     +  N   +  IS         
Sbjct: 399 NLSDLLQDAINR------NPEMKPIKKDSRISLKDTQIGNLTNR--ITFIS--------- 441

Query: 641 YNSILNLV--RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIES 698
             +I  L   + I  + + F+ +           +  N  +         +  N++ +  
Sbjct: 442 -KAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 699 LDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDL 753
           ++L       ++P  +  L  L  LN++ N+ +                 TG  +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.2 bits (221), Expect = 2e-18
 Identities = 39/238 (16%), Positives = 65/238 (27%), Gaps = 20/238 (8%)

Query: 70  LKHLNLLDLSGNDFQGIQ----IPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL 125
           +  +  +D S N                   N   + LS      +        S +  +
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 126 DLSG-----SYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLF 180
            LS                       LL  +D     L   SD      +LP L  + + 
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR-ATTLPYLSNMDVS 761

Query: 181 SCKLHHFAPLASANFSSLNALDLSGNLFGK-----TSIPSWVFGLSDLVFLDLSSNIFRG 235
                 F P    N S L A  +      +        P+ +     L+ L + SN  R 
Sbjct: 762 YNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

Query: 236 PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL 293
            + +       L  LD++ N   S        + +     L Y++ Q  I       +
Sbjct: 821 -VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ-DIRGCDALGI 874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  225 bits (576), Expect = 2e-64
 Identities = 105/665 (15%), Positives = 186/665 (27%), Gaps = 146/665 (21%)

Query: 72  HLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY 131
               +DLS N  + ++      +   L++L+LS              L +L +L L+G+ 
Sbjct: 33  STKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLA 191
                           ++                   + L SL+ L     KL       
Sbjct: 92  ----------------IQSFSPG------------SFSGLTSLENLVAVETKLASLESFP 123

Query: 192 SANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR--- 248
                +L  L+++ N      +P++   L++LV +DLS N  +    +  + L       
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 249 -YLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELG 307
             LD+S N  +      F     L  L+L  N     I    L+NL  +    L   E  
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 308 QDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS 367
            + +  L+I        L  +                    +    L+  +         
Sbjct: 243 DERN--LEIFEPSIMEGLCDV-------------------TIDEFRLTYTNDFSDDIVKF 281

Query: 368 GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRL 427
             L++++ + L+  ++  +           L+                            
Sbjct: 282 HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL---------------- 325

Query: 428 RSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLN 487
                             L  L ++  + S    +                  P L  L+
Sbjct: 326 --------------DLPFLKSLTLTMNKGSISFKKV---------------ALPSLSYLD 356

Query: 488 LGNNKFTGSIPIS--MGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNI 545
           L  N  + S   S       SLR L+L  N    I+   F    +L  LD   +      
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVT 415

Query: 546 PTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMA 605
                    +L  L++        F      L+SL  L +A N    +    +       
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV------- 468

Query: 606 TIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPME 665
                          F N                        +  +D+S           
Sbjct: 469 ---------------FAN---------------------TTNLTFLDLSKCQLEQISWGV 492

Query: 666 VTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNL 725
              L  LQ LN+SHN+ +         + S+ +LD S N+I             L   NL
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552

Query: 726 SDNKL 730
           ++N +
Sbjct: 553 TNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  221 bits (564), Expect = 8e-63
 Identities = 106/566 (18%), Positives = 178/566 (31%), Gaps = 79/566 (13%)

Query: 195 FSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLS 253
            SS   +DLS N      + S+ F   S+L +LDLS           +  L  L  L L+
Sbjct: 31  PSSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 254 YNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEI 313
            N   S     FS    LE L     +L   + S  +  L  +K L+++ N +     ++
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHS--CKL 145

Query: 314 LDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLH----TLALSDNSVSGPLPPASGE 369
               S      L  + L    I     N L   +       +L +S N +   +   + +
Sbjct: 146 PAYFSNLTN--LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQ 202

Query: 370 LSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPP--------FQ 421
              L  L L  N  +  I +    NL  L            + N +   P          
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 422 LLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMN-- 479
           +   RL   +         H   ++S + ++   I  +            +I  C +   
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 480 ----WPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFEN--CSQLVA 533
                P L+ L L  NK  GSI      L SL  L+L  N LS      + +   + L  
Sbjct: 323 PTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 534 LDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQ-ICHLSSLQILDVAYNRLSG 592
           LD+  N  +     +MG     L+ L+ + + L  +        L  L  LD++Y     
Sbjct: 381 LDLSFNGAIIMSANFMG--LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 593 SVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSID 652
                    T                                           +L  ++ 
Sbjct: 439 DFDGIFLGLT-------------------------------------------SL-NTLK 454

Query: 653 ISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIP 711
           ++ N+F       V  N   L  L+LS              +  ++ L++S N +     
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 712 QSMSSLSFLNHLNLSDNKLVGKIPSS 737
              + L  L+ L+ S N++       
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  208 bits (532), Expect = 2e-58
 Identities = 101/570 (17%), Positives = 169/570 (29%), Gaps = 92/570 (16%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
            L+L R E+    + A   L HL+ L L+GN  Q    P     + +L  L       A 
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLAS 118

Query: 111 WIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINS 170
                +G L  L  L+++ ++       I     P+   +                    
Sbjct: 119 LESFPIGQLITLKKLNVAHNF-------IHSCKLPAYFSN-------------------- 151

Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNA----LDLSGNLFGKTSIPSWVFGLSDLVFL 226
           L +L  + L    +                    LD+S N      I    F    L  L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI--DFIQDQAFQGIKLHEL 209

Query: 227 DLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTIS------DCFSNFDDLEYLSLGYN 279
            L  N     I     +NL  L    L   +F    +             D+        
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 280 RLQGT-ISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQ 338
                    +    L  +  + L+   +         +      F+ +SL +  C++   
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKY-------LEDVPKHFKWQSLSIIRCQLKQF 322

Query: 339 LTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTEL 398
            T  L     L +L L+ N  S  +      L SL+YLDLS N L+       + +L   
Sbjct: 323 PTLDL---PFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSF-SGCCSYSDLGTN 376

Query: 399 AFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISD 458
                                  L  L L          +     + L  LD  ++ +  
Sbjct: 377 ----------------------SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKR 413

Query: 459 IIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLS 518
           +                 +++   L  L++               LTSL +L +  N   
Sbjct: 414 VTE------------FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 519 GIIPVP-FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHL 577
                  F N + L  LD+ + +              RL++LN+  N L  +       L
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 578 SSLQILDVAYNRLSGSVPKCINNFTAMATI 607
            SL  LD ++NR+  S     +   ++A  
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  183 bits (467), Expect = 1e-49
 Identities = 85/527 (16%), Positives = 149/527 (28%), Gaps = 86/527 (16%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
            L    ++L    +  +  L  L  L+++ N     ++P Y  ++ NL +++LS      
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 111 WIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINS 170
              + L  L                         P +   LD S   +    D       
Sbjct: 168 ITVNDLQFLREN----------------------PQVNLSLDMSLNPIDFIQDQAF---Q 202

Query: 171 LPSLKVLKLFSCKL-HHFAPLASANFSSLNALDLSGNLFG-----KTSIPSWVFGLSDLV 224
              L  L L       +       N + L+   L    F      +   PS + GL D+ 
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 225 F--LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ 282
                L+           F  L ++  + L+                  + LS+   +  
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQ-- 318

Query: 283 GTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKIS--GQLT 340
             +      +L F+K+L L+ N       +        A   L  L L    +S  G  +
Sbjct: 319 --LKQFPTLDLPFLKSLTLTMN-------KGSISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 341 NQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
                  +L  L LS N     +      L  L +LD  ++ L  +     F +L +L +
Sbjct: 370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 401 FYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDII 460
                                   L +   +    F         L+ L ++     D  
Sbjct: 429 ------------------------LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 461 PRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGI 520
               + +               L  L+L   +          TL  L+ LN+  N L  +
Sbjct: 465 LSNVFANTTN------------LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 521 IPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLH 567
               +     L  LD   N         +      L   NL +N + 
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 9e-12
 Identities = 24/95 (25%), Positives = 38/95 (40%)

Query: 643 SILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLS 702
            I +  ++ID+S N          +N   LQ L+LS         +    +  + +L L+
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 703 GNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS 737
           GN I    P S S L+ L +L   + KL       
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 9e-12
 Identities = 16/94 (17%), Positives = 35/94 (37%)

Query: 645 LNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGN 704
            + ++ +D+S              L  L +L L+ N      P +   + S+E+L     
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 705 QISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSST 738
           +++      +  L  L  LN++ N +      + 
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  190 bits (485), Expect = 6e-51
 Identities = 137/721 (19%), Positives = 240/721 (33%), Gaps = 115/721 (15%)

Query: 91  YIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEH 150
           + G +   R+ NL+       +P     L+    L LS +Y  +R    S       L+ 
Sbjct: 4   FDGRIAFYRFCNLT------QVPQ---VLNTTERLLLSFNY--IRTVTASSFPFLEQLQL 52

Query: 151 LDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGK 210
           L+         +       +LP+L++L L S K++   P A      L  L L       
Sbjct: 53  LELGS-QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111

Query: 211 TSIPSWVF-GLSDLVFLDLSSN-IFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNF 268
             +    F  L  L  LDLS N I    +   F  L SL+ +D S NQ            
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171

Query: 269 D--DLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELE 326
               L + SL  N L   +S    + +   + + L          EILD+       ++ 
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL----------EILDVSGNGWTVDIT 221

Query: 327 SLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGEL--SSLTYLDLSNNNLN 384
             F     IS      L L  ++       +++  P       L  SS+ +LDLS+  + 
Sbjct: 222 GNFSNA--ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 385 GMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQK 444
             ++   F  L +L       N +N   +  +     L  L L    LG  + S  +   
Sbjct: 280 -SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTL 504
            ++ +D+    I+ I  + F                  L+ L+L +N  T     ++  +
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFK-------------FLEKLQTLDLRDNALT-----TIHFI 380

Query: 505 TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN 564
            S+  + L  N+L  +  +          + + EN        +   R   L+IL L  N
Sbjct: 381 PSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436

Query: 565 KLHGIFPIQICH-LSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFEN 623
           +       Q      SL+ L +  N L  +    +                      FE 
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV------------------FEG 478

Query: 624 DYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFI 683
                                L+ ++ + ++ N  +   P   ++L  L+ L+L+ N  +
Sbjct: 479 ---------------------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-L 516

Query: 684 GKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS-----------------FLNHLNLS 726
             +        ++E LD+S NQ+    P    SLS                 F+N LN +
Sbjct: 517 TVLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHT 575

Query: 727 DNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLALCLSAGDGGTSTVISWMA 786
           +  + G       +      S +G  L       C E+ VL     +     +  ++   
Sbjct: 576 NVTIAG---PPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFL 632

Query: 787 L 787
           +
Sbjct: 633 M 633

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  169 bits (431), Expect = 6e-44
 Identities = 103/553 (18%), Positives = 180/553 (32%), Gaps = 62/553 (11%)

Query: 66  ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL 125
           +   L+ L LL+L           E   ++ NLR L+L  +      P     L +L  L
Sbjct: 43  SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102

Query: 126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLH 185
            L        V    +      L  LD S    I++         L SLK +   S ++ 
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 186 HFAP--LASANFSSLNALDLSGNLFGKTSIPSW-----VFGLSDLVFLDLSSNIFRGPIP 238
                 L      +L+   L+ N         W      F    L  LD+S N +   I 
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 239 DGFKN------------LTSLRYLDLSYNQFNSTISDCFSNFDD--LEYLSLGYNRLQGT 284
             F N               +      ++       + F+      + +L L +  +  +
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-S 280

Query: 285 ISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLG 344
           ++S   E L  +K L+L++N++ +   E    +       L+ L L    +    ++   
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-----NLQVLNLSYNLLGELYSSNFY 335

Query: 345 LFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYAN 404
               +  + L  N ++         L  L  LDL +N L           +  +   + +
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT------TIHFIPSIPDIFLS 389

Query: 405 GNSVNFKINSKWVPPFQLLALRLRSCHL-GPHFPSWLHSQKHLSKLDISNTRISDIIPRW 463
           GN    K+ +          + L    L       +L    HL  L ++  R S      
Sbjct: 390 GN----KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 464 FWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-----GTLTSLRSLNLRSNRLS 518
             +              P L  L LG N    +    +       L+ L+ L L  N L+
Sbjct: 446 TPS------------ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

Query: 519 GIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLS 578
            + P  F + + L  L +  N     +        + L IL++  N+L    P       
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLT-VLSHND--LPANLEILDISRNQLLAPNP---DVFV 547

Query: 579 SLQILDVAYNRLS 591
           SL +LD+ +N+  
Sbjct: 548 SLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  164 bits (417), Expect = 3e-42
 Identities = 101/523 (19%), Positives = 178/523 (34%), Gaps = 69/523 (13%)

Query: 51  ELNLERSELGGKINP--ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGF 108
           EL L    L   +       +LK L  LDLS N  + + +    G +++L+ ++ S    
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 109 AGWIPHQLGNLSNLMHLDLSGSYYELR-VEDISWLAGPSLLEHLDTSDVDLIKASDWLLV 167
                H+L  L        S +   L     + W    +   ++    +D+         
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV--------- 211

Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFG---LSDLV 224
             +  ++ +   FS  +      +      +       +           F     S + 
Sbjct: 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI--KDPDQNTFAGLARSSVR 269

Query: 225 FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGT 284
            LDLS           F+ L  L+ L+L+YN+ N    + F   D+L+ L+L YN L   
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-E 328

Query: 285 ISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLG 344
           + S     L  +  +DL  N +     +    +      +L++L LR   ++      + 
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-----KLQTLDLRDNALT-----TIH 378

Query: 345 LFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYAN 404
              ++  + LS N +   LP  +    +   + LS N L  +        +  L     N
Sbjct: 379 FIPSIPDIFLSGNKLVT-LPKIN---LTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 405 GNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWF 464
            N                   R  SC  G   PS   S   L +L +    +        
Sbjct: 435 QN-------------------RFSSCS-GDQTPSENPS---LEQLFLGENMLQLAWETEL 471

Query: 465 WNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVP 524
              +++            L+VL L +N      P     LT+LR L+L SNRL+ +    
Sbjct: 472 CWDVFEGL--------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523

Query: 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLH 567
               + L  LD+  N     +     + F  L +L++  NK  
Sbjct: 524 L--PANLEILDISRN----QLLAPNPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  103 bits (258), Expect = 8e-23
 Identities = 68/286 (23%), Positives = 101/286 (35%), Gaps = 41/286 (14%)

Query: 48  HVLELNLERSELGGKINP-ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGA 106
            V  L+L    +   +N      LK L +L+L+ N    I   E    +DNL+ LNLS  
Sbjct: 267 SVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYN 324

Query: 107 GFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLL 166
                       L  + ++DL  +   + +           L+ LD  D  L        
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKN--HIAIIQDQTFKFLEKLQTLDLRDNALTT------ 376

Query: 167 VINSLPSLKVLKLFSCKLHHFAPLAS---------------------ANFSSLNALDLSG 205
            I+ +PS+  + L   KL     +                            L  L L+ 
Sbjct: 377 -IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 206 NLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPI-----PDGFKNLTSLRYLDLSYNQFNST 260
           N F   S          L  L L  N+ +         D F+ L+ L+ L L++N  NS 
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 261 ISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
               FS+   L  LSL  NRL     +    NL   + LD+S N+L
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL---EILDISRNQL 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  182 bits (463), Expect = 2e-49
 Identities = 104/553 (18%), Positives = 180/553 (32%), Gaps = 90/553 (16%)

Query: 195 FSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLS 253
             S   LDLS N      + S+ F    +L  LDLS    +      +++L+ L  L L+
Sbjct: 27  PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 254 YNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQ-DISE 312
            N   S     FS    L+ L      L  ++ +  + +L  +K L+++ N +    + E
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 313 ILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLH----TLALSDNSVSGPLPPASG 368
               ++      LE L L   KI       L +   +     +L LS N ++  + P + 
Sbjct: 144 YFSNLTN-----LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAF 197

Query: 369 ELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPP--------F 420
           +   L  L L NN  +  + +     L  L            + N +             
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 421 QLLALRLRSCHL-GPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMN 479
            +   RL              +   ++S   + +  I  +    +               
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG------------ 305

Query: 480 WPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGEN 539
               + L L N KF          L SL+ L   SN+          +   L  LD+  N
Sbjct: 306 ---WQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRN 357

Query: 540 EF-VGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598
                   +      + L+ L+L  N +  +       L  L+ LD  ++ L       +
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 599 NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNF 658
                                 F +                     L  +  +DIS  + 
Sbjct: 417 ----------------------FLS---------------------LRNLIYLDISHTHT 433

Query: 659 SGEIPMEVTNLKGLQSLNLSHNSFIGKI-PETIGNMRSIESLDLSGNQISGKIPQSMSSL 717
                     L  L+ L ++ NSF     P+    +R++  LDLS  Q+    P + +SL
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 718 SFLNHLNLSDNKL 730
           S L  LN++ N+L
Sbjct: 494 SSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  176 bits (448), Expect = 2e-47
 Identities = 103/555 (18%), Positives = 174/555 (31%), Gaps = 70/555 (12%)

Query: 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSS 230
            S K L L    L H    +  +F  L  LDLS       +I    +  LS L  L L+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTG 85

Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGL 290
           N  +      F  L+SL+ L        S  +    +   L+ L++ +N +Q        
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 291 ENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFK--N 348
            NLT ++ LDLS N++       L ++         SL L    ++     Q G FK   
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSLNPMNFI---QPGAFKEIR 201

Query: 349 LHTLALSDNSVSGPLPP-ASGELSSLTYLDLSNNNLNG-----MISEIHFGNLTELAFFY 402
           LH L L +N  S  +       L+ L    L               +     L  L    
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 403 ANGNSVNFKINSKWVPPFQLLALR---LRSCHLGPHFP-SWLHSQKHLSKLDISNTRISD 458
                +++ ++        L  +    L S  +      S+    +HL  ++    +   
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 459 IIPRWFWN---SIYQDTIPDCWMNWPDLRVLNLGNNKFT--GSIPISMGTLTSLRSLNLR 513
           +  +       +  +       ++ P L  L+L  N  +  G    S    TSL+ L+L 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 514 SNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQ 573
            N +   +   F    QL  LD   +         +      L  L++        F   
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 574 ICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLV 633
              LSSL++L +A N    +                           F            
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLP----------------------DIFTE---------- 468

Query: 634 MKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGN 692
                      L  +  +D+S      ++      +L  LQ LN++ N            
Sbjct: 469 -----------LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 693 MRSIESLDLSGNQIS 707
           + S++ + L  N   
Sbjct: 517 LTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  176 bits (448), Expect = 3e-47
 Identities = 109/537 (20%), Positives = 183/537 (34%), Gaps = 47/537 (8%)

Query: 72  HLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY 131
               LDLS N  + +       S   L+ L+LS             +LS+L  L L+G+ 
Sbjct: 29  STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN- 86

Query: 132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFA-PL 190
             ++   +   +G S L+ L   + +L    +    I  L +LK L +    +  F  P 
Sbjct: 87  -PIQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 191 ASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDL----VFLDLSSNIFRGPIPDGFKNLT 245
             +N ++L  LDLS N     SI       L  +    + LDLS N      P  FK + 
Sbjct: 144 YFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200

Query: 246 SLRYLDLSYNQFNSTI-SDCFSNFDDLEYLSLGYNRLQG-----TISSIGLENLTFIKTL 299
            L  L L  N  +  +   C      LE   L     +            LE L  +   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 300 DLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSV 359
           +     L   + +I+D+ +      + S  L    I                L L +   
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCL--TNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKF 316

Query: 360 SGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFK--INSKWV 417
                  + +L SL  L  ++N      SE+   +L  L     + N ++FK   +    
Sbjct: 317 GQF---PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL---DLSRNGLSFKGCCSQSDF 370

Query: 418 PPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW 477
               L  L L    +     S     + L  LD  ++ +  +     +            
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL----------- 418

Query: 478 MNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGII-PVPFENCSQLVALDM 536
            +  +L  L++ +     +       L+SL  L +  N       P  F     L  LD+
Sbjct: 419 -SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 537 GENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGS 593
            + +    +        S L++LN+ SN+L  +       L+SLQ + +  N    S
Sbjct: 478 SQCQL-EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (296), Expect = 1e-27
 Identities = 70/377 (18%), Positives = 122/377 (32%), Gaps = 37/377 (9%)

Query: 43  NNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLN 102
           + +    L L+L  + +   I P       L+ L L  N      +   I  +  L    
Sbjct: 173 HQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 103 LSGAGFAGWI------PHQLGNLSNLMHLDLSGSYYELRVEDIS-WLAGPSLLEHLDTSD 155
           L    F             L  L NL   +   +Y +  ++DI       + +       
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 156 VDLIKASDWL-----------------LVINSLPSLKVLKLFSCKLHHFAPLASANFSSL 198
           V + +  D+                       L SLK L   S K  +    +  +  SL
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSL 349

Query: 199 NALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQF 257
             LDLS N        S    G + L +LDLS N     +   F  L  L +LD  ++  
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 258 NSTISDC-FSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDI-SEILD 315
                   F +  +L YL + +   +    +     L+ ++ L ++ N   ++   +I  
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 316 IISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTY 375
            +       L  L L  C++            +L  L ++ N +          L+SL  
Sbjct: 468 ELRN-----LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522

Query: 376 LDLSNNNLNGMISEIHF 392
           + L  N  +     I +
Sbjct: 523 IWLHTNPWDCSCPRIDY 539

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  171 bits (436), Expect = 8e-46
 Identities = 108/571 (18%), Positives = 186/571 (32%), Gaps = 72/571 (12%)

Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDL 228
           S  +  V    S       P  S   +++ +LDLS N    T I        ++L  L L
Sbjct: 3   SCDASGVCDGRSRSFTSI-P--SGLTAAMKSLDLSFNKI--TYIGHGDLRACANLQVLIL 57

Query: 229 SSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI 288
            S+       D F +L SL +LDLS N  +S  S  F     L+YL+L  N  Q    + 
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 289 GLENLTFIKTLDLSFNELGQDISEILDIISACAAFE----LESLFLRGCKISGQLTNQLG 344
              NLT ++TL +   E   +I            F     L  L ++   +    +  L 
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRR--------IDFAGLTSLNELEIKALSLRNYQSQSLK 169

Query: 345 LFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYAN 404
             +++H L L  +  +  L   +  LSS+ YL+L + NL        F  L         
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA----RFQFSPLPVDEVSSPM 225

Query: 405 GNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWF 464
                           +LL L      L             +   D +   + D  P   
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILEL-----------SEVEFDDCTLNGLGDFNPSES 274

Query: 465 WNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVP 524
                   +         +R L++        +      L  ++ + + ++++  +    
Sbjct: 275 DVVSELGKV-----ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329

Query: 525 FENCSQLVALDMGENEFVGNIPTWMG--ERFSRLRILNLRSNKLHGI--FPIQICHLSSL 580
            ++   L  LD+ EN  V            +  L+ L L  N L  +      +  L +L
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 581 QILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVE 640
             LD++ N          ++      +                      ++L   G  V 
Sbjct: 390 TSLDISRNTFH----PMPDSCQWPEKM--------------------RFLNLSSTGIRVV 425

Query: 641 YNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLD 700
              I   +  +D+S NN      +    L  LQ L +S N  +  +P+       +  + 
Sbjct: 426 KTCIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNK-LKTLPDA-SLFPVLLVMK 479

Query: 701 LSGNQISGKIPQSMSSLSFLNHLNLSDNKLV 731
           +S NQ+          L+ L  + L  N   
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  159 bits (405), Expect = 8e-42
 Identities = 98/535 (18%), Positives = 176/535 (32%), Gaps = 68/535 (12%)

Query: 72  HLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY 131
            +  LDLS N    I     + +  NL+ L L  +           +L +L HLDLS + 
Sbjct: 27  AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN- 84

Query: 132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC-KLHHFAPL 190
             L     SW    S L++L+              +  +L +L+ L++ +         +
Sbjct: 85  -HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 191 ASANFSSLNALDLSGNLFGKTSIPSWVFG-LSDLVFLDLSSNIFRGPIPDGFKNLTSLRY 249
             A  +SLN L++        +  S     + D+  L L  +     +      L+S+RY
Sbjct: 143 DFAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 250 LDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQG---------TISSIGLENLTFIKTLD 300
           L+L                +    +     R                  +  L+ ++  D
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 301 LSFNELGQDISEILDIISACAAFE---LESLFLRGCKISGQLTNQLGLFKNLHTLALSDN 357
            + N LG       D++S     E   +  L +    +   L+    L + +  + + ++
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 358 SVSGPLPPASGELSSLTYLDLSNNNL--NGMISEIHFGNLTELAFFYANGNSVNFKINSK 415
            V       S  L SL +LDLS N +    + +    G    L     + N     + S 
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN----HLRSM 376

Query: 416 WVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPD 475
                 LL L+                  +L+ LDIS                    +PD
Sbjct: 377 QKTGEILLTLK------------------NLTSLDISRNTFH--------------PMPD 404

Query: 476 CWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALD 535
                  +R LNL +        +      +L  L++ +N L            +L  L 
Sbjct: 405 SCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQELY 457

Query: 536 MGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRL 590
           +  N+    +P      F  L ++ +  N+L  +       L+SLQ + +  N  
Sbjct: 458 ISRNKLK-TLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  158 bits (401), Expect = 3e-41
 Identities = 105/641 (16%), Positives = 189/641 (29%), Gaps = 149/641 (23%)

Query: 73  LNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYY 132
             + D     F    IP  +     ++ L+LS           L   +NL  L L  S  
Sbjct: 7   SGVCDGRSRSFT--SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR- 61

Query: 133 ELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLAS 192
                          +  ++                 SL SL+ L L    L   +    
Sbjct: 62  ---------------INTIEGD------------AFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 193 ANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDL 252
              SSL  L+L GN +   ++                       +   F NLT+L+ L +
Sbjct: 95  GPLSSLKYLNLMGNPY--QTL----------------------GVTSLFPNLTNLQTLRI 130

Query: 253 SYNQFNSTIS-DCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS 311
              +  S I    F+    L  L +    L+    S  L+++  I  L L  +E    + 
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 312 EILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELS 371
              DI+S+     +  L LR   ++    + L + +    +       S     +  EL 
Sbjct: 190 IFADILSS-----VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 372 SLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCH 431
            L    L  + +        F + T       N +  +       V    +  L +   +
Sbjct: 245 KLLRYILELSEV-------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 432 LGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNN 491
           L     +     + + ++ + N+++  +                   +   L  L+L  N
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLV-------------PCSFSQHLKSLEFLDLSEN 344

Query: 492 KFTGSI---PISMGTLTSLRSLNLRSNRLSGI--IPVPFENCSQLVALDMGENEFVGNIP 546
                        G   SL++L L  N L  +            L +LD+  N F     
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF----- 399

Query: 547 TWMGERFS---RLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTA 603
             M +      ++R LNL S  +  +     C   +L++LDV+ N L  S          
Sbjct: 400 HPMPDSCQWPEKMRFLNLSSTGIRVVKT---CIPQTLEVLDVSNNNLD-SFS-------- 447

Query: 604 MATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIP 663
                                                    L  ++ + IS N     +P
Sbjct: 448 ---------------------------------------LFLPRLQELYISRNKLK-TLP 467

Query: 664 MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGN 704
            + +    L  + +S N            + S++ + L  N
Sbjct: 468 -DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (387), Expect = 2e-39
 Identities = 89/550 (16%), Positives = 173/550 (31%), Gaps = 102/550 (18%)

Query: 196 SSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYN 255
            +    D     F  TSIPS +   + +  LDLS N          +   +L+ L L  +
Sbjct: 5   DASGVCDGRSRSF--TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 256 QFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILD 315
           + N+   D F +   LE+L L  N L  ++SS     L+ +K L+L  N           
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPY--------Q 111

Query: 316 IISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS-GELSSLT 374
            +   + F               LTN       L TL + +      +       L+SL 
Sbjct: 112 TLGVTSLF-------------PNLTN-------LQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 375 YLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGP 434
            L++   +L          ++ ++     + +   F +         +  L LR  +L  
Sbjct: 152 ELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

Query: 435 HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT 494
              S L   +  S +     R S +    F      + +        +L  +   +    
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESF------NELLKLLRYILELSEVEFDDCTLN 264

Query: 495 GSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFS 554
           G    +      +  L                    +  L + +        + +     
Sbjct: 265 GLGDFNPSESDVVSEL-------------GKVETVTIRRLHIPQFYL-FYDLSTVYSLLE 310

Query: 555 RLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVK 614
           +++ + + ++K+  +      HL SL+ LD++ N +                        
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV----------------------- 347

Query: 615 AIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFS--GEIPMEVTNLKGL 672
                         E  L               ++++ +S N+     +    +  LK L
Sbjct: 348 --------------EEYLKNSAC----KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 673 QSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG 732
            SL++S N+    +P++      +  L+LS   I   +         L  L++S+N L  
Sbjct: 390 TSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLDS 445

Query: 733 KIPSSTQLQS 742
                 +LQ 
Sbjct: 446 FSLFLPRLQE 455

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.2 bits (224), Expect = 6e-19
 Identities = 53/290 (18%), Positives = 97/290 (33%), Gaps = 49/290 (16%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
               V +  +  FT SIP   G   +++SL+L  N+++ I       C+ L  L +  + 
Sbjct: 5   DASGVCDGRSRSFT-SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
               I          L  L+L  N L  +       LSSL+ L++  N    ++      
Sbjct: 62  I-NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVT--- 116

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
                             + F N                     L  ++++ I       
Sbjct: 117 ------------------SLFPN---------------------LTNLQTLRIGNVETFS 137

Query: 661 EIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSF 719
           EI       L  L  L +   S      +++ ++R I  L L  ++ +  +      LS 
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 720 LNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLAL 769
           + +L L D  L  +   S       +S +      G+ L++ +   +L L
Sbjct: 198 VRYLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 42/244 (17%), Positives = 77/244 (31%), Gaps = 17/244 (6%)

Query: 48  HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAG 107
            +  L++ +  L   ++     L+ +  + +  +    +    +   + +L +L+LS   
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP-CSFSQHLKSLEFLDLSENL 345

Query: 108 FAGWIPHQ---LGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDW 164
                       G   +L  L LS ++     +    L     L  LD S        D 
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD- 404

Query: 165 LLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLV 224
                    ++ L L S  +     + +    +L  LD+S N     S       L  L 
Sbjct: 405 --SCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNL--DSFSL---FLPRLQ 454

Query: 225 FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGT 284
            L +S N  +            L  + +S NQ  S     F     L+ + L  N    +
Sbjct: 455 ELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512

Query: 285 ISSI 288
              I
Sbjct: 513 CPRI 516

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.9 bits (187), Expect = 2e-14
 Identities = 46/316 (14%), Positives = 93/316 (29%), Gaps = 60/316 (18%)

Query: 435 HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT 494
             PS L +   +  LD+S  +I+ I                      +L+VL L +++  
Sbjct: 19  SIPSGLTA--AMKSLDLSFNKITYIGHGDLRA-------------CANLQVLILKSSRIN 63

Query: 495 GSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFS 554
                +  +L SL  L+L  N LS +    F   S L  L++  N +     T +    +
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 555 RLRILNL-RSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQV 613
            L+ L +        I  I    L+SL  L++    L     + + +   +         
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI--------- 174

Query: 614 KAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQ 673
                                                + + ++  +  + +    L  ++
Sbjct: 175 -----------------------------------HHLTLHLSESAFLLEIFADILSSVR 199

Query: 674 SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGK 733
            L L   +        +        +     + S    +S + L  L    L  +++   
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 734 IPSSTQLQSFGASSIT 749
             +   L  F  S   
Sbjct: 260 DCTLNGLGDFNPSESD 275

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  168 bits (428), Expect = 2e-45
 Identities = 114/499 (22%), Positives = 189/499 (37%), Gaps = 72/499 (14%)

Query: 116 LGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLK 175
              L+  M   L  +     V D         +  L    + +         +  L +L 
Sbjct: 20  DTALAEKMKTVLGKT----NVTDTVSQTDLDQVTTLQADRLGIKSIDG----VEYLNNLT 71

Query: 176 VLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRG 235
            +   + +L    PL   N + L  + ++ N      I   +  L++L  L L +N    
Sbjct: 72  QINFSNNQLTDITPLK--NLTKLVDILMNNNQI--ADITP-LANLTNLTGLTLFNNQITD 126

Query: 236 PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTF 295
             P   KNLT+L  L+LS N  +   +   S    L+ LS G            L NLT 
Sbjct: 127 IDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV----TDLKPLANLTT 178

Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
           ++ LD+S N++  DIS +  + +      LESL     +IS  +T  LG+  NL  L+L+
Sbjct: 179 LERLDISSNKV-SDISVLAKLTN------LESLIATNNQISD-ITP-LGILTNLDELSLN 229

Query: 356 DNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSK 415
            N +          L++LT LDL+NN ++ +        LT+L       N    +I++ 
Sbjct: 230 GNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGAN----QISN- 279

Query: 416 WVPPF----QLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQD 471
            + P      L  L L    L     S + + K+L+ L +    ISDI P          
Sbjct: 280 -ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP---------- 326

Query: 472 TIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQL 531
                  +   L+ L   NNK +    +    LT++  L+   N++S + P    N +++
Sbjct: 327 -----VSSLTKLQRLFFYNNKVSDVSSL--ANLTNINWLSAGHNQISDLTP--LANLTRI 377

Query: 532 VALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHG-IFPIQICHLSSLQILDVAYNRL 590
             L + +  +            + + I N   N     I P  I    S    D+ +N  
Sbjct: 378 TQLGLNDQAWTNAPV----NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433

Query: 591 SGSVPKCINNFTAMATIGS 609
           S    +    F+   TIG 
Sbjct: 434 S-YTNEVSYTFSQPVTIGK 451

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  161 bits (410), Expect = 5e-43
 Identities = 104/546 (19%), Positives = 190/546 (34%), Gaps = 102/546 (18%)

Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD 227
             +L       L    +         +   +  L          SI   V  L++L  ++
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDG-VEYLNNLTQIN 74

Query: 228 LSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISS 287
            S+N      P   KNLT L  + ++ NQ         +N  +L  L+L  N++      
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DI 127

Query: 288 IGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFK 347
             L+NLT +  L+LS N +  DIS +  + S      L+ L   G +++      L    
Sbjct: 128 DPLKNLTNLNRLELSSNTI-SDISALSGLTS------LQQLSF-GNQVTDLKP--LANLT 177

Query: 348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS 407
            L  L +S N VS        +L++L  L  +NN ++ +      G LT L     NGN 
Sbjct: 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGN- 231

Query: 408 VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNS 467
              ++    +     L                     +L+ LD++N +IS++ P      
Sbjct: 232 ---QLKD--IGTLASL--------------------TNLTDLDLANNQISNLAP------ 260

Query: 468 IYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFEN 527
                          L  L LG N+ +   P++   LT+L +L L  N+L  I P    N
Sbjct: 261 ---------LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP--ISN 307

Query: 528 CSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAY 587
              L  L +  N      P       ++L+ L   +NK+  +  +   +L+++  L   +
Sbjct: 308 LKNLTYLTLYFNNISDISPV---SSLTKLQRLFFYNNKVSDVSSL--ANLTNINWLSAGH 362

Query: 588 NRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNL 647
           N++S   P  + N T +  +               +               V Y + +++
Sbjct: 363 NQISDLTP--LANLTRITQL------------GLNDQAWTNAP--------VNYKANVSI 400

Query: 648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS 707
             ++           P  +++       +++ N       E         ++       S
Sbjct: 401 PNTVKNVTGALI--APATISDGGSYTEPDITWNL-PSYTNEVSYTFSQPVTIGKGTTTFS 457

Query: 708 GKIPQS 713
           G + Q 
Sbjct: 458 GTVTQP 463

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  156 bits (396), Expect = 4e-41
 Identities = 100/513 (19%), Positives = 182/513 (35%), Gaps = 101/513 (19%)

Query: 240 GFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTFIKT 298
               L       L       T+S   ++ D +  L          I SI G+E L  +  
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG----IKSIDGVEYLNNLTQ 72

Query: 299 LDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNS 358
           ++ S N+L  DI+ + ++        L  + +   +I+      L    NL  L L +N 
Sbjct: 73  INFSNNQL-TDITPLKNLTK------LVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQ 123

Query: 359 VSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVP 418
           ++         L++L  L+LS+N ++ + +     +L +L          +F      + 
Sbjct: 124 ITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQL----------SFGNQVTDLK 171

Query: 419 PFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWM 478
           P   L                      L +LDIS+ ++SDI             +     
Sbjct: 172 PLANL--------------------TTLERLDISSNKVSDI-----------SVLAKL-- 198

Query: 479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGE 538
              +L  L   NN+ +   P+  G LT+L  L+L  N+L  I      + + L  LD+  
Sbjct: 199 --TNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN 252

Query: 539 NEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598
           N+     P       ++L  L L +N++  I P+    L++L  L++  N+L    P  I
Sbjct: 253 NQISNLAPL---SGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP--I 305

Query: 599 NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNF 658
           +N   +  +            +   + I +   +          S L  ++ +    N  
Sbjct: 306 SNLKNLTYL------------TLYFNNISDISPV----------SSLTKLQRLFFYNNKV 343

Query: 659 SGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS 718
           S      + NL  +  L+  HN      P  + N+  I  L L+    +       +++S
Sbjct: 344 SD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVS 399

Query: 719 FLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN 751
             N +      L+     S    S+    IT N
Sbjct: 400 IPNTVKNVTGALIAPATIS-DGGSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (359), Expect = 3e-36
 Identities = 105/499 (21%), Positives = 186/499 (37%), Gaps = 84/499 (16%)

Query: 48  HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAG 107
            V  L  +R  +  K    +  L +L  ++ S N    I     + ++  L  + ++   
Sbjct: 47  QVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQ 101

Query: 108 FAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLV 167
            A   P  L NL+NL  L L  +    ++ DI  L   + L  L+ S   +   S     
Sbjct: 102 IADITP--LANLTNLTGLTLFNN----QITDIDPLKNLTNLNRLELSSNTISDISA---- 151

Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD 227
           ++ L SL+ L     ++    PL  AN ++L  LD+S N   K S  S +  L++L  L 
Sbjct: 152 LSGLTSLQQLSF-GNQVTDLKPL--ANLTTLERLDISSN---KVSDISVLAKLTNLESLI 205

Query: 228 LSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISS 287
            ++N      P     LT+L  L L+ NQ     +   ++  +L  L L  N++    + 
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQIS---NL 258

Query: 288 IGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFK 347
             L  LT +  L L  N++  +IS +  + +      L +L L   ++     + +   K
Sbjct: 259 APLSGLTKLTELKLGANQI-SNISPLAGLTA------LTNLELNENQLED--ISPISNLK 309

Query: 348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS 407
           NL  L L  N++S   P     L+ L  L   NN ++ + S     NLT + +  A  N 
Sbjct: 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQ 364

Query: 408 VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNS 467
           +        + P   L                      +++L +++   ++    +  N 
Sbjct: 365 I------SDLTPLANL--------------------TRITQLGLNDQAWTNAPVNYKANV 398

Query: 468 IYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFEN 527
              +T+                N       P ++    S    ++  N  S    V +  
Sbjct: 399 SIPNTV---------------KNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTF 443

Query: 528 CSQLVALDMGENEFVGNIP 546
            SQ V +  G   F G + 
Sbjct: 444 -SQPVTIGKGTTTFSGTVT 461

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (375), Expect = 3e-39
 Identities = 84/424 (19%), Positives = 140/424 (33%), Gaps = 95/424 (22%)

Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD 227
              L       L    +            S+  L ++G      SI   +  L++L +L+
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKV--ASIQG-IEYLTNLEYLN 72

Query: 228 LSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISS 287
           L+ N      P    NL  L  L +  N+   T      N  +L  L L  + +      
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNIS---DI 125

Query: 288 IGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFK 347
             L NLT + +L+L  N    D+S + ++        L  L +   K+       +    
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLSPLSNMTG------LNYLTVTESKVKD--VTPIANLT 177

Query: 348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS 407
           +L++L+L+ N +          L+SL Y     N +  +       N+T           
Sbjct: 178 DLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP---VANMT----------- 221

Query: 408 VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNS 467
                                                 L+ L I N +I+D+ P      
Sbjct: 222 -------------------------------------RLNSLKIGNNKITDLSP------ 238

Query: 468 IYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFEN 527
                      N   L  L +G N+ +    +    LT L+ LN+ SN++S I      N
Sbjct: 239 ---------LANLSQLTWLEIGTNQISDINAV--KDLTKLKMLNVGSNQISDIS--VLNN 285

Query: 528 CSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAY 587
            SQL +L +  N+        +G   + L  L L  N +  I P+    LS +   D A 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITDIRPLA--SLSKMDSADFAN 342

Query: 588 NRLS 591
             + 
Sbjct: 343 QVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (370), Expect = 1e-38
 Identities = 74/403 (18%), Positives = 151/403 (37%), Gaps = 74/403 (18%)

Query: 116 LGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLK 175
             +L+  +   L  +     V D+        +  L  +   +         I  L +L+
Sbjct: 18  DADLAEGIRAVLQKA----SVTDVVTQEELESITKLVVAGEKVASIQG----IEYLTNLE 69

Query: 176 VLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRG 235
            L L   ++   +PL  +N   L  L +  N     +  S +  L++L  L L+ +    
Sbjct: 70  YLNLNGNQITDISPL--SNLVKLTNLYIGTNKI---TDISALQNLTNLRELYLNEDNISD 124

Query: 236 PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTF 295
             P    NLT +  L+L  N   S +S   SN   L YL++  ++++       + NLT 
Sbjct: 125 ISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK---DVTPIANLTD 178

Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
           + +L L++N++ +DIS +  + S      L        +I+  +T  +     L++L + 
Sbjct: 179 LYSLSLNYNQI-EDISPLASLTS------LHYFTAYVNQITD-ITP-VANMTRLNSLKIG 229

Query: 356 DNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSK 415
           +N ++         LS LT+L++  N ++ + +     +LT+L       N    +I+  
Sbjct: 230 NNKITD--LSPLANLSQLTWLEIGTNQISDINA---VKDLTKLKMLNVGSN----QISD- 279

Query: 416 WVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPD 475
            +     L                      L+ L ++N ++ +                 
Sbjct: 280 -ISVLNNL--------------------SQLNSLFLNNNQLGNEDMEVIG---------- 308

Query: 476 CWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLS 518
                 +L  L L  N  T   P++  +L+ + S +  +  + 
Sbjct: 309 ---GLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (370), Expect = 1e-38
 Identities = 82/458 (17%), Positives = 157/458 (34%), Gaps = 116/458 (25%)

Query: 250 LDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQD 309
           L       N    D  ++  +     L    +   ++    E L  I  L ++  ++   
Sbjct: 5   LATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV-AS 58

Query: 310 ISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGE 369
           I  I  + +      LE L L G +I+    + L     L  L +  N ++     A   
Sbjct: 59  IQGIEYLTN------LEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITDI--SALQN 108

Query: 370 LSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRS 429
           L++L  L L+ +N++ +       NLT++       N      N   + P   +      
Sbjct: 109 LTNLRELYLNEDNISDISP---LANLTKMYSLNLGANH-----NLSDLSPLSNM------ 154

Query: 430 CHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLG 489
                           L+ L ++ +++ D+ P                 N  DL  L+L 
Sbjct: 155 --------------TGLNYLTVTESKVKDVTP---------------IANLTDLYSLSLN 185

Query: 490 NNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWM 549
            N+     P+   +LTSL       N+++ I P    N ++L +L +G N+     P   
Sbjct: 186 YNQIEDISPL--ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL-- 239

Query: 550 GERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGS 609
               S+L  L + +N++  I  ++   L+ L++L+V  N++S      +NN + +     
Sbjct: 240 -ANLSQLTWLEIGTNQISDINAVK--DLTKLKMLNVGSNQISD--ISVLNNLSQL----- 289

Query: 610 HHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNL 669
                                                   S+ ++ N    E    +  L
Sbjct: 290 ---------------------------------------NSLFLNNNQLGNEDMEVIGGL 310

Query: 670 KGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS 707
             L +L LS N      P  + ++  ++S D +   I 
Sbjct: 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  132 bits (334), Expect = 8e-34
 Identities = 76/320 (23%), Positives = 131/320 (40%), Gaps = 35/320 (10%)

Query: 65  PALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH 124
             +  L +L  L+L+GN    I     + ++  L  L +            L NL+NL  
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRE 114

Query: 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL 184
           L L+       + DIS LA  + +  L+      +     L  ++++  L  L +   K+
Sbjct: 115 LYLNED----NISDISPLANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKV 167

Query: 185 HHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNL 244
               P+  AN + L +L L+ N      I   +  L+ L +     N      P    N+
Sbjct: 168 KDVTPI--ANLTDLYSLSLNYNQI--EDISP-LASLTSLHYFTAYVNQITDITP--VANM 220

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTFIKTLDLSF 303
           T L  L +  N+         +N   L +L +G N+    IS I  +++LT +K L++  
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ----ISDINAVKDLTKLKMLNVGS 274

Query: 304 NELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL 363
           N++  DIS + ++        L SLFL   ++  +    +G   NL TL LS N ++   
Sbjct: 275 NQI-SDISVLNNLSQ------LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-- 325

Query: 364 PPASGELSSLTYLDLSNNNL 383
                 LS +   D +N  +
Sbjct: 326 IRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (300), Expect = 2e-29
 Identities = 84/413 (20%), Positives = 139/413 (33%), Gaps = 108/413 (26%)

Query: 325 LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384
             +L      I+ Q+              L   SV+  +     EL S+T L ++   + 
Sbjct: 2   AATLATLPAPIN-QIFP-DADLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKVA 57

Query: 385 GMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQK 444
             I  I    LT L +   NGN    +I    + P   L                     
Sbjct: 58  S-IQGI--EYLTNLEYLNLNGN----QITD--ISPLSNL--------------------V 88

Query: 445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTL 504
            L+ L I   +I+DI                   N  +LR L L  +  +   P+    L
Sbjct: 89  KLTNLYIGTNKITDISA---------------LQNLTNLRELYLNEDNISDISPL--ANL 131

Query: 505 TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN 564
           T + SLNL +N     +  P  N + L  L + E++     P       + L  L+L  N
Sbjct: 132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPI---ANLTDLYSLSLNYN 187

Query: 565 KLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFEND 624
           ++  I P+    L+SL       N+++   P  + N T +                    
Sbjct: 188 QIEDISPL--ASLTSLHYFTAYVNQITDITP--VANMTRL-------------------- 223

Query: 625 YIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIG 684
                                    S+ I  N  +   P  + NL  L  L +  N  I 
Sbjct: 224 ------------------------NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ-IS 256

Query: 685 KIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS 737
            I   + ++  ++ L++  NQIS      +++LS LN L L++N+L  +    
Sbjct: 257 DINA-VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEV 306

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.5 bits (236), Expect = 5e-21
 Identities = 56/320 (17%), Positives = 114/320 (35%), Gaps = 81/320 (25%)

Query: 446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLT 505
            + L      I+ I P                 +  +     L     T  +      L 
Sbjct: 2   AATLATLPAPINQIFPD---------------ADLAEGIRAVLQKASVTDVVTQEE--LE 44

Query: 506 SLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNK 565
           S+  L +   +++ I     E  + L  L++  N+     P        +L  L + +NK
Sbjct: 45  SITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISPL---SNLVKLTNLYIGTNK 99

Query: 566 LHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDY 625
           +  I  +Q  +L++L+ L +  + +S   P  + N T                       
Sbjct: 100 ITDISALQ--NLTNLRELYLNEDNISDISP--LANLT----------------------- 132

Query: 626 IVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGK 685
                                +  S+++  N+   ++   ++N+ GL  L ++ +  +  
Sbjct: 133 --------------------KM-YSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKD 169

Query: 686 IPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS--TQLQSF 743
           +   I N+  + SL L+ NQI    P  ++SL+ L++     N++    P +  T+L S 
Sbjct: 170 VTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSL 226

Query: 744 GASSITGNDLCG-APLSNCT 762
               I  N +   +PL+N +
Sbjct: 227 ---KIGNNKITDLSPLANLS 243

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 671 GLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKL 730
           G  +L       I +I     ++       L    ++  + Q    L  +  L ++  K+
Sbjct: 1   GAATLATLPAP-INQI-FPDADLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKV 56

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  140 bits (356), Expect = 2e-36
 Identities = 63/401 (15%), Positives = 126/401 (31%), Gaps = 66/401 (16%)

Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFL 226
           +        + +       +        ++   +    +      +P+ +      +  L
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELL 74

Query: 227 DLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTIS 286
           +L+           F    +++ L + +N         F N   L  L L  N L  ++ 
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 287 SIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF 346
                N   + TL +S N L +   +     ++     L++L L   +++      L L 
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-----LQNLQLSSNRLT---HVDLSLI 185

Query: 347 KNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGN 406
            +L    +S N +S  L        ++  LD S+N+    I+ +      EL       N
Sbjct: 186 PSLFHANVSYNLLST-LAI----PIAVEELDASHNS----INVVRGPVNVELTILKLQHN 236

Query: 407 SVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWN 466
                               L          +WL +   L ++D+S   +  I+   F  
Sbjct: 237 -------------------NLTD-------TAWLLNYPGLVEVDLSYNELEKIMYHPF-- 268

Query: 467 SIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFE 526
                      +    L  L + NN+   ++ +    + +L+ L+L  N L   +     
Sbjct: 269 -----------VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 315

Query: 527 NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLH 567
              +L  L +  N    +I T        L+ L L  N   
Sbjct: 316 QFDRLENLYLDHN----SIVTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (317), Expect = 2e-31
 Identities = 74/513 (14%), Positives = 139/513 (27%), Gaps = 166/513 (32%)

Query: 50  LELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFA 109
            +++++            + L +  ++    +  + +                       
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP---------------------- 61

Query: 110 GWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVIN 169
                 L +   +  L+L+                   +E +DT                
Sbjct: 62  ---AALLDSFRQVELLNLND----------------LQIEEIDTY------------AFA 90

Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDL 228
              +++ L +    + +  P    N   L  L L  N    +S+P  +F     L  L +
Sbjct: 91  YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSM 148

Query: 229 SSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI 288
           S+N       D F+  TSL+ L LS N+  + +    S    L + ++ YN L       
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLS------ 199

Query: 289 GLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKN 348
            L     ++ LD S N     I+ +                               +   
Sbjct: 200 TLAIPIAVEELDASHNS----INVVRG----------------------------PVNVE 227

Query: 349 LHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSV 408
           L  L L  N+++            L  +DLS N L   I    F  +             
Sbjct: 228 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQ------------ 272

Query: 409 NFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSI 468
                                                L +L ISN R+  +         
Sbjct: 273 ------------------------------------RLERLYISNNRLVAL--------- 287

Query: 469 YQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENC 528
                       P L+VL+L +N     +  +      L +L L  N +  +        
Sbjct: 288 -----NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTH 338

Query: 529 SQLVALDMGENEFVGNIPTWMGERFSRLRILNL 561
             L  L +  N++  N    +    +R  + + 
Sbjct: 339 HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (316), Expect = 3e-31
 Identities = 62/374 (16%), Positives = 131/374 (35%), Gaps = 41/374 (10%)

Query: 220 LSDLVFLDLSSNIFRGPIPDGFK--NLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLG 277
             D VF D+  ++    +  GF+   L + + +    +      +    +F  +E L+L 
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 278 YNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISG 337
             +++  I +        I+ L + FN +      +   +       L  L L    +S 
Sbjct: 78  DLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL-----LTVLVLERNDLSS 131

Query: 338 QLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTE 397
                      L TL++S+N++           +SL  L LS+N     ++ +    +  
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPS 187

Query: 398 LAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRIS 457
           L     + N +     S    P  +  L      +             L+ L + +  ++
Sbjct: 188 LFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT 239

Query: 458 DIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRL 517
           D                   +N+P L  ++L  N+    +      +  L  L + +NRL
Sbjct: 240 DT---------------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 518 SGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHL 577
              + +  +    L  LD+  N  + ++     + F RL  L L  N +     +++   
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIV---TLKLSTH 338

Query: 578 SSLQILDVAYNRLS 591
            +L+ L +++N   
Sbjct: 339 HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (299), Expect = 6e-29
 Identities = 74/446 (16%), Positives = 132/446 (29%), Gaps = 104/446 (23%)

Query: 285 ISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLG 344
              I           D+  +   QD+    + I+       + +  +   +       L 
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL---NNQKIVTFKNSTMRKLPAALLD 66

Query: 345 LFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYAN 404
            F+ +  L L+D  +      A     ++  L +  N +   +    F N+  L      
Sbjct: 67  SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLE 125

Query: 405 GNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWF 464
            N     ++S  +P                           L+ L +SN  +  I    F
Sbjct: 126 RN----DLSS--LPRGIFHNTP------------------KLTTLSMSNNNLERIEDDTF 161

Query: 465 WNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVP 524
             +               L+ L L +N+ T    + +  + SL   N+  N LS +    
Sbjct: 162 QAT-------------TSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTL---- 201

Query: 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584
                 +  LD   N    +I    G     L IL L+ N L     +   +   L  +D
Sbjct: 202 -AIPIAVEELDASHN----SINVVRGPVNVELTILKLQHNNLTDTAWLL--NYPGLVEVD 254

Query: 585 VAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSI 644
           ++YN L                         I +  F                       
Sbjct: 255 LSYNELE-----------------------KIMYHPFVK--------------------- 270

Query: 645 LNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGN 704
           +  +  + IS N     + +    +  L+ L+LSHN  +  +         +E+L L  N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN 328

Query: 705 QISGKIPQSMSSLSFLNHLNLSDNKL 730
            I   +    S+   L +L LS N  
Sbjct: 329 SIV-TLKL--STHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (297), Expect = 9e-29
 Identities = 61/355 (17%), Positives = 123/355 (34%), Gaps = 36/355 (10%)

Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
           I    +       + +     +          ++ + ++   + ++  + +  L++   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
           + L+L+  ++     E +D  +   A  ++ L++    I     +       L  L L  
Sbjct: 72  ELLNLNDLQI-----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 357 NSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKW 416
           N +S            LT L +SNNNL   I +  F   T L     + N +   ++   
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL 184

Query: 417 VPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDC 476
           +P   L    +    L     S L     + +LD S+  I+ +                 
Sbjct: 185 IP--SLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVN------------ 225

Query: 477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDM 536
                +L +L L +N  T      +     L  ++L  N L  I+  PF    +L  L +
Sbjct: 226 ----VELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 537 GENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS 591
             N  V  +    G+    L++L+L  N L  +          L+ L + +N + 
Sbjct: 280 SNNRLV-ALNL-YGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.2 bits (180), Expect = 7e-14
 Identities = 31/243 (12%), Positives = 79/243 (32%), Gaps = 33/243 (13%)

Query: 490 NNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWM 549
                  I  ++        +++                +    +    +     +P  +
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL 64

Query: 550 GERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIG- 608
            + F ++ +LNL   ++  I      +  ++Q L + +N +    P    N   +  +  
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124

Query: 609 SHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-T 667
             + + ++    F N                        + ++ +S NN    I  +   
Sbjct: 125 ERNDLSSLPRGIFHN---------------------TPKLTTLSMSNNNLE-RIEDDTFQ 162

Query: 668 NLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD 727
               LQ+L LS N  +  +   +  + S+   ++S N +S     +++    +  L+ S 
Sbjct: 163 ATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASH 214

Query: 728 NKL 730
           N +
Sbjct: 215 NSI 217

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  144 bits (364), Expect = 3e-36
 Identities = 89/598 (14%), Positives = 180/598 (30%), Gaps = 81/598 (13%)

Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFL 226
           +        + +       +        ++   +    +      +P+ +      +  L
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELL 80

Query: 227 DLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTIS 286
           +L+           F    +++ L + +N         F N   L  L L  N L  ++ 
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139

Query: 287 SIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF 346
                N   + TL +S N L + I +  D   A  +  L++L L   +++      L L 
Sbjct: 140 RGIFHNTPKLTTLSMSNNNL-ERIED--DTFQATTS--LQNLQLSSNRLT---HVDLSLI 191

Query: 347 KNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGN 406
            +L    +S N +S  L        ++  LD S+N+    I+ +      EL       N
Sbjct: 192 PSLFHANVSYNLLST-LAI----PIAVEELDASHNS----INVVRGPVNVELTILKLQHN 242

Query: 407 SVNFKINSKWVPPF----QLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPR 462
                +             L+ + L    L           + L +L ISN R+      
Sbjct: 243 ----NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA---- 292

Query: 463 WFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIP 522
                     +       P L+VL+L +N     +  +      L +L L  N +  +  
Sbjct: 293 ----------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-- 339

Query: 523 VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHG-IFPIQICHLSS-- 579
                   L  L +  N++  N    +    +R  + +   +          +C   S  
Sbjct: 340 -KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDK 398

Query: 580 ----LQILDVAYNRLSGSVPKCINNFTAMATIGS----HHQVKAIYHASFENDYIVE--- 628
                 +  +A   +   V +     +A  TI S     H +        + +  +E   
Sbjct: 399 PYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEV 458

Query: 629 ---------------EISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQ 673
                          +   +++G   E ++ L   R     +   S  +    T+LK  Q
Sbjct: 459 NELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQ 518

Query: 674 SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQ-SMSSLSFLNHLNLSDNKL 730
           +  L       +  E     +  E L+     +  ++              +L   K+
Sbjct: 519 AFKLRETQA--RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (291), Expect = 4e-27
 Identities = 75/506 (14%), Positives = 171/506 (33%), Gaps = 53/506 (10%)

Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
           I    +       + +     +          ++ + ++   + ++  + +  L++   +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
           + L+L+  ++     E +D  +   A  ++ L++    I     +       L  L L  
Sbjct: 78  ELLNLNDLQI-----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132

Query: 357 NSVSGPLPPAS-GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSK 415
           N +S  LP         LT L +SNNNL   I +  F   T L     + N +   ++  
Sbjct: 133 NDLSS-LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLS 189

Query: 416 WVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPD 475
            +P   L    +    L     S L     + +LD S+  I+ +                
Sbjct: 190 LIP--SLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVN----------- 231

Query: 476 CWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALD 535
                 +L +L L +N  T      +     L  ++L  N L  I+  PF    +L  L 
Sbjct: 232 -----VELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 536 MGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP 595
           +  N  V  +  +       L++L+L  N L  +          L+ L + +N +  ++ 
Sbjct: 285 ISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIV-TLK 340

Query: 596 KCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISM 655
             ++    +  +        + H  ++ + +      V +  + + +    +   ++  +
Sbjct: 341 --LSTHHTLKNL-------TLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGL 391

Query: 656 NNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS 715
                + P     L+ +   ++       K+    G   + ++++   +       Q   
Sbjct: 392 CCKESDKPYLDRLLQYIALTSVVE-----KVQRAQGRCSATDTINSVQSLSHYITQQGGV 446

Query: 716 SLSFLNHLNLSDNKLVGKIPSSTQLQ 741
            L     L    N+L  ++   T  Q
Sbjct: 447 PLQGNEQLEAEVNELRAEVQQLTNEQ 472

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 37/256 (14%), Positives = 74/256 (28%), Gaps = 42/256 (16%)

Query: 65  PALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH 124
             L++   L  +DLS N+ + I        M  L  L +S       +      +  L  
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 305

Query: 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL 184
           LDLS                 + L H++ +                   L+ L L    +
Sbjct: 306 LDLSH----------------NHLLHVERN-------------QPQFDRLENLYLDHNSI 336

Query: 185 HHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPI------- 237
                L  +   +L  L LS N +   S+ +    ++     D   +             
Sbjct: 337 VT---LKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCC 393

Query: 238 PDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIK 297
            +  K         ++       +          + ++   +     I+  G   L   +
Sbjct: 394 KESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSH-YITQQGGVPLQGNE 452

Query: 298 TLDLSFNELGQDISEI 313
            L+   NEL  ++ ++
Sbjct: 453 QLEAEVNELRAEVQQL 468

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  139 bits (351), Expect = 4e-35
 Identities = 76/512 (14%), Positives = 159/512 (31%), Gaps = 76/512 (14%)

Query: 88  IPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSL 147
           I E   + +  +   ++ +     +     +  N+  LDLSG+   L     + LA  + 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN--PLSQISAADLAPFTK 59

Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNL 207
           LE L+ S   L +  D    + SL +L+ L L +  +            S+  L  + N 
Sbjct: 60  LELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNN 110

Query: 208 FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNS-TISDCFS 266
              + +            + L++N             + ++YLDL  N+ ++   ++  +
Sbjct: 111 I--SRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 267 NFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELE 326
           + D LE+L+L YN +      +    L   KTLDLS N+L                    
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVVFAKL---KTLDLSSNKL-------------------- 203

Query: 327 SLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGM 386
                       +  +      +  ++L +N +   +  A     +L + DL  N  +  
Sbjct: 204 ----------AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252

Query: 387 ISEIHFGNLTELAFFYANGNS-VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQK- 444
                F     +          +  +   +   P            L   F   L + K 
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR 312

Query: 445 -HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT 503
              + L    +    +                   N    R ++    ++   I      
Sbjct: 313 KEHALLSGQGSETERLECERE--------------NQARQREIDALKEQYRTVIDQVTLR 358

Query: 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVAL---DMGENEFVGNIPTWMGERFSRLRILN 560
             +  +L  +   L   +       ++L       +G+ E          E  S L++L 
Sbjct: 359 KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHAT-----EEQSPLQLLR 413

Query: 561 LRSNKL-HGIFPIQICHLSSLQILDVAYNRLS 591
               +        Q    ++++  D+  ++ +
Sbjct: 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  138 bits (348), Expect = 9e-35
 Identities = 65/532 (12%), Positives = 150/532 (28%), Gaps = 123/532 (23%)

Query: 212 SIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDL 271
           +I       +      ++ +  +  +    ++  +++ LDLS N  +   +   + F  L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 272 EYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLR 331
           E L+L  N L  T+    L  L   +TLDL+ N     + E+L   S      +E+L   
Sbjct: 61  ELLNLSSNVLYETLDLESLSTL---RTLDLNNNY----VQELLVGPS------IETLHAA 107

Query: 332 GCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIH 391
              IS          +    + L++N ++       G  S + YLDL  N ++ +     
Sbjct: 108 NNNIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 392 FGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDI 451
             +                                                   L  L++
Sbjct: 165 AASSD------------------------------------------------TLEHLNL 176

Query: 452 SNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLN 511
               I D+  +                 +  L+ L+L +NK    +     +   +  ++
Sbjct: 177 QYNFIYDVKGQVV---------------FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 512 LRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFP 571
           LR+N+L  +I         L   D+  N F               R+  +    +  +  
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAKQTVKKLTG 277

Query: 572 IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEIS 631
                 +   +                                          +    I+
Sbjct: 278 QNEEECTVPTLGHYGAYCCE----------------------------DLPAPFADRLIA 309

Query: 632 LVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIG 691
           L  K      +++L+          + +  +  E  N    + ++     +   I +   
Sbjct: 310 LKRKE-----HALLSG-------QGSETERLECERENQARQREIDALKEQYRTVIDQVTL 357

Query: 692 NMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSF 743
             ++  +L+     +  ++     + + L+         +    ++ +    
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (297), Expect = 3e-28
 Identities = 73/516 (14%), Positives = 131/516 (25%), Gaps = 85/516 (16%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
              +  S L   +        ++  LDLSGN    I     +     L  LNLS      
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYE 72

Query: 111 WIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINS 170
                L +LS L  LDL+ +Y       +  L     +E L  ++ ++ +     +  + 
Sbjct: 73  --TLDLESLSTLRTLDLNNNY-------VQELLVGPSIETLHAANNNISR-----VSCSR 118

Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
               K + L + K+     L     S +  LDL  N     +          L  L+L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGL 290
           N     +         L+ LDLS N+  + +   F +   + ++SL  N+L   I    L
Sbjct: 179 NFIYD-VKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEK-AL 233

Query: 291 ENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLH 350
                ++  DL  N                                          KN  
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDF------------------------------FSKNQR 263

Query: 351 TLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNF 410
              ++  +V         E +  T            +       L  L        S   
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQG 322

Query: 411 KINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQ 470
               +                          +Q    ++D    +   +I +        
Sbjct: 323 SETER--------------------LECERENQARQREIDALKEQYRTVIDQVTL----- 357

Query: 471 DTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQ 530
                          L          +         L     ++      +    E  S 
Sbjct: 358 --------RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSP 408

Query: 531 LVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKL 566
           L  L      +          + + +R  ++  +K 
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  111 bits (278), Expect = 7e-26
 Identities = 50/349 (14%), Positives = 109/349 (31%), Gaps = 71/349 (20%)

Query: 421 QLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNW 480
           +    ++    L     S   S  ++ +LD+S   +S I                    +
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL-------------APF 57

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
             L +LNL +N    ++ +   +L++LR+L+L +N +  +          +  L    N 
Sbjct: 58  TKLELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANN- 109

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
              NI      R    + + L +NK+  +  +     S +Q LD+  N +          
Sbjct: 110 ---NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID--------T 158

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
                   S                                    + +  +++  N    
Sbjct: 159 VNFAELAAS-----------------------------------SDTLEHLNLQYNFIY- 182

Query: 661 EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL 720
           ++  +      L++L+LS N  +  +     +   +  + L  N++   I +++     L
Sbjct: 183 DVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239

Query: 721 NHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLAL 769
            H +L  N            ++    ++    +      N  E  V  L
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (277), Expect = 1e-25
 Identities = 56/414 (13%), Positives = 114/414 (27%), Gaps = 75/414 (18%)

Query: 348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS 407
                 ++D+S+   L        ++  LDLS N L+  IS       T+L     + N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSN- 68

Query: 408 VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNS 467
               +        + L+  LR+  L  ++   L     +  L  +N  IS +        
Sbjct: 69  ---VLYE--TLDLESLS-TLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG- 121

Query: 468 IYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGI-IPVPFE 526
                           + + L NNK T    +  G  + ++ L+L+ N +  +       
Sbjct: 122 ---------------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 527 NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVA 586
           +   L  L++  N    ++   +   F++L+ L+L SNKL  +   +    + +  + + 
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLR 222

Query: 587 YNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILN 646
            N+L   + K +                                               N
Sbjct: 223 NNKLV-LIEKALRFSQ-------------------------------------------N 238

Query: 647 LVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQI 706
           L    D+  N F      +    K  +   ++  +      +                  
Sbjct: 239 L-EHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 707 SGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSN 760
                     L  L     +     G      + +    +     D        
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  137 bits (347), Expect = 1e-34
 Identities = 79/398 (19%), Positives = 138/398 (34%), Gaps = 75/398 (18%)

Query: 195 FSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY 254
            +   A+      F   ++P  +   ++   LDL  N  +    D F +   L  L+L+ 
Sbjct: 10  SAQDRAVLCHRKRF--VAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 255 NQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEIL 314
           N  ++     F+N  +L  L L  NRL+  I       L+ +  LD+S N+    I  +L
Sbjct: 66  NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENK----IVILL 120

Query: 315 DIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLT 374
           D       F+                    L  NL +L + DN +      A   L+SL 
Sbjct: 121 D-----YMFQ-------------------DL-YNLKSLEVGDNDLVYISHRAFSGLNSLE 155

Query: 375 YLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGP 434
            L L   NL   I      +L  L        ++N                      +  
Sbjct: 156 QLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN---------------------AIRD 193

Query: 435 HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT 494
           +    L+    L  L+IS+    D +                     +L  L++ +   T
Sbjct: 194 YSFKRLYR---LKVLEISHWPYLDTMTPNCLYG-------------LNLTSLSITHCNLT 237

Query: 495 GSIPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERF 553
            ++P      L  LR LNL  N +S I         +L  + +   + +  +  +     
Sbjct: 238 -AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGL 295

Query: 554 SRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS 591
           + LR+LN+  N+L  +       + +L+ L +  N L+
Sbjct: 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (314), Expect = 2e-30
 Identities = 73/380 (19%), Positives = 121/380 (31%), Gaps = 51/380 (13%)

Query: 74  NLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYE 133
             +      F    +PE I +    R L+L           +  +  +L  L+L+ +   
Sbjct: 14  RAVLCHRKRFV--AVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN--- 66

Query: 134 LRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASA 193
                +S +   +                      N+L +L+ L L S +L         
Sbjct: 67  ----IVSAVEPGAF---------------------NNLFNLRTLGLRSNRLKLIPLGVFT 101

Query: 194 NFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLD 251
             S+L  LD+S N      +  ++F  L +L  L++  N     I    F  L SL  L 
Sbjct: 102 GLSNLTKLDISENKI--VILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLT 158

Query: 252 LSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS 311
           L      S  ++  S+   L  L L +  +   I     + L  +K L++S       ++
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 312 EILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELS 371
                 +      L SL +  C ++      +     L  L LS N +S        EL 
Sbjct: 218 P-----NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 372 SLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRS-- 429
            L  + L    L  ++    F  L  L     +GN +     S +     L  L L S  
Sbjct: 273 RLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

Query: 430 ----CHLGPHFPSWLHSQKH 445
               C L             
Sbjct: 332 LACDCRLLW-VFRRRWRLNF 350

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (297), Expect = 3e-28
 Identities = 67/391 (17%), Positives = 119/391 (30%), Gaps = 89/391 (22%)

Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
           G+      L L  N +             L  L+L+ N +   +    F NL  L     
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGL 87

Query: 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRW 463
             N    ++    +P      L                   +L+KLDIS  +I  ++   
Sbjct: 88  RSN----RLKL--IPLGVFTGLS------------------NLTKLDISENKIVILLDYM 123

Query: 464 FWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSNRLSGIIP 522
           F              +  +L+ L +G+N     I       L SL  L L    L+ I  
Sbjct: 124 F-------------QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPT 169

Query: 523 VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQI 582
               +   L+ L +        I  +  +R  RL++L +              +  +L  
Sbjct: 170 EALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

Query: 583 LDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYN 642
           L + +  L+                       A+ + +  +                   
Sbjct: 229 LSITHCNLT-----------------------AVPYLAVRH------------------- 246

Query: 643 SILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLD 700
             L  +R +++S N  S  I   +   L  LQ + L     +  +       +  +  L+
Sbjct: 247 --LVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLN 302

Query: 701 LSGNQISGKIPQSMSSLSFLNHLNLSDNKLV 731
           +SGNQ++        S+  L  L L  N L 
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (281), Expect = 3e-26
 Identities = 69/340 (20%), Positives = 117/340 (34%), Gaps = 72/340 (21%)

Query: 51  ELNLERSELGGKINP-ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFA 109
           EL L  + +   + P A  +L +L  L L  N  + I                       
Sbjct: 60  ELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIP---------------------- 96

Query: 110 GWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVIN 169
                    LSNL  LD+S +        I  L                           
Sbjct: 97  ---LGVFTGLSNLTKLDISEN-------KIVILLDYMF---------------------Q 125

Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDL 228
            L +LK L++    L + +  A +  +SL  L L       TSIP+     L  L+ L L
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRL 183

Query: 229 SSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI 288
                       FK L  L+ L++S+  +  T++       +L  LS+ +  L   +  +
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL 242

Query: 289 GLENLTFIKTLDLSFNELGQDISEILDIISACAAFE----LESLFLRGCKISGQLTNQLG 344
            + +L +++ L+LS+N     IS I       +       L+ + L G +++        
Sbjct: 243 AVRHLVYLRFLNLSYNP----ISTIEG-----SMLHELLRLQEIQLVGGQLAVVEPYAFR 293

Query: 345 LFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384
               L  L +S N ++         + +L  L L +N L 
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 50/260 (19%), Positives = 90/260 (34%), Gaps = 52/260 (20%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
              R +     +F  ++P  +   T  R L+L  NR+  +    F +   L  L++ EN 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
            V  +          LR L LRSN+L  I       LS+L  LD++ N++          
Sbjct: 68  -VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV--------- 117

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
                          +    F++                     L  ++S+++  N+   
Sbjct: 118 --------------ILLDYMFQD---------------------LYNLKSLEVGDNDLV- 141

Query: 661 EIPMEV-TNLKGLQSLNLSHNSFIGKIP-ETIGNMRSIESLDLSGNQISGKIPQSMSSLS 718
            I     + L  L+ L L   + +  IP E + ++  +  L L    I+     S   L 
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 719 FLNHLNLSDNKLVGKIPSST 738
            L  L +S    +  +  + 
Sbjct: 201 RLKVLEISHWPYLDTMTPNC 220

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  129 bits (327), Expect = 3e-32
 Identities = 90/536 (16%), Positives = 164/536 (30%), Gaps = 92/536 (17%)

Query: 63  INPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNL 122
           INP  V    L       ++    ++P    ++ +      + + +    P   G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 123 MHLDLSGSYY-ELRVEDISWL------AGPSLLEHLDTSDVDLIKASDWLLVINSLPSLK 175
               L      +    +++ L        P  LE L  S   L +  +      SL SL 
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPEL---PQSLKSLL 117

Query: 176 VLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRG 235
           V       L       S     L  L +S N      +P  +   S L  +D+ +N    
Sbjct: 118 VDNNNLKAL-------SDLPPLLEYLGVSNNQL--EKLPE-LQNSSFLKIIDVDNN---- 163

Query: 236 PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTF 295
            +        SL ++    NQ    + +   N   L  +    N L+         +L  
Sbjct: 164 SLKKLPDLPPSLEFIAAGNNQL-EELPE-LQNLPFLTAIYADNNSLKKLPDLPL--SL-- 217

Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
            +++    N L     E L  +       L +++     +   L +      +L  L + 
Sbjct: 218 -ESIVAGNNIL-----EELPELQNLP--FLTTIYADNNLLK-TLPDLPP---SLEALNVR 265

Query: 356 DNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSK 415
           DN ++  LP       SLT+LD+S N  +G+       NL  L        S+     S 
Sbjct: 266 DNYLTD-LPE---LPQSLTFLDVSENIFSGLSELP--PNLYYLNASSNEIRSLCDLPPS- 318

Query: 416 WVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPD 475
                 L  L + +  L    P+       L +L  S   ++++ P    N         
Sbjct: 319 ------LEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEV-PELPQN--------- 358

Query: 476 CWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALD 535
                  L+ L++  N      P    ++  LR  +  +      +P   E    L  L 
Sbjct: 359 -------LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAE-----VP---ELPQNLKQLH 402

Query: 536 MGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS 591
           +  N      P         +  L + S ++   +         L+     ++   
Sbjct: 403 VETNPLR-EFPDIPES----VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  128 bits (325), Expect = 6e-32
 Identities = 97/562 (17%), Positives = 176/562 (31%), Gaps = 129/562 (22%)

Query: 187 FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNL-- 244
           F    + + + L       +    T +P     +        + + +    P G      
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE 59

Query: 245 -----------TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL 293
                           L+L+     S++ +   +   LE L    N L   +     ++L
Sbjct: 60  MAVSRLRDCLDRQAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPE-LPQSL 113

Query: 294 TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLA 353
             +   + +   L                  LE L +   ++  +L   L     L  + 
Sbjct: 114 KSLLVDNNNLKALSDLPP------------LLEYLGVSNNQLE-KLPE-LQNSSFLKIID 159

Query: 354 LSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIH-FGNLTELAFFYANGNSVNFKI 412
           + +NS+   LP       SL ++   NN L     E+    NL  L   YA+ NS+    
Sbjct: 160 VDNNSLKK-LPD---LPPSLEFIAAGNNQL----EELPELQNLPFLTAIYADNNSLKKLP 211

Query: 413 NSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDT 472
           +     P  L ++   +  L       L +   L+ +   N  +               T
Sbjct: 212 DL----PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK--------------T 251

Query: 473 IPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLV 532
           +PD     P L  LN+ +N  T  +P    +LT L       + LS + P        L 
Sbjct: 252 LPD---LPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLY 300

Query: 533 ALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSG 592
            L+   NE   ++          L  LN+ +NKL  +          L+ L  ++N L+ 
Sbjct: 301 YLNASSNEIR-SLCDLP----PSLEELNVSNNKLIELPA----LPPRLERLIASFNHLA- 350

Query: 593 SVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSI- 651
            VP+   N                                 +K   VEYN +        
Sbjct: 351 EVPELPQN---------------------------------LKQLHVEYNPLREFPDIPE 377

Query: 652 ---DISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISG 708
              D+ MN+   E+P    NLK    L++  N  + + P+   +   +E L ++  ++  
Sbjct: 378 SVEDLRMNSHLAEVPELPQNLK---QLHVETNP-LREFPDIPES---VEDLRMNSERVVD 430

Query: 709 KIPQSMSSLSFLNHLNLSDNKL 730
               +  +   L       +  
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  119 bits (301), Expect = 7e-29
 Identities = 83/560 (14%), Positives = 169/560 (30%), Gaps = 129/560 (23%)

Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNL 207
           L  +     ++   +++    +             +    + L        + L+L+   
Sbjct: 23  LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82

Query: 208 FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSN 267
              +S+P        L  L  S N     +P+  ++L SL   + +    +         
Sbjct: 83  L--SSLPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL---- 132

Query: 268 FDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELES 327
              LEYL +  N+L+  +  +   N +F+K +D+  N L     ++ D+  +     LE 
Sbjct: 133 ---LEYLGVSNNQLE-KLPELQ--NSSFLKIIDVDNNSL----KKLPDLPPS-----LEF 177

Query: 328 LFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMI 387
           +     ++      +L     L  +   +NS+   LP       SL  +   NN L   +
Sbjct: 178 IAAGNNQLEE--LPELQNLPFLTAIYADNNSLKK-LPD---LPLSLESIVAGNNILE-EL 230

Query: 388 SEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLS 447
            E+   NL  L   YA+ N                    L++       P        L 
Sbjct: 231 PEL--QNLPFLTTIYADNN-------------------LLKT------LPDLP---PSLE 260

Query: 448 KLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSL 507
            L++ +  ++               +P+   +   L V     +  +   P       +L
Sbjct: 261 ALNVRDNYLT--------------DLPELPQSLTFLDVSENIFSGLSELPP-------NL 299

Query: 508 RSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLH 567
             LN  SN +  +     +    L  L++  N+ +  +P        RL  L    N L 
Sbjct: 300 YYLNASSNEIRSLC----DLPPSLEELNVSNNKLI-ELPALPP----RLERLIASFNHLA 350

Query: 568 GIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIV 627
            +  +      +L+ L V YN L    P    +      +  +  +  +           
Sbjct: 351 EVPEL----PQNLKQLHVEYNPLR-EFPDIPESVE---DLRMNSHLAEVP---------- 392

Query: 628 EEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIP 687
                             NL + + +  N    E P    ++   + L ++    +    
Sbjct: 393 --------------ELPQNL-KQLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPYE 433

Query: 688 ETIGNMRSIESLDLSGNQIS 707
                   +E      +   
Sbjct: 434 FAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (298), Expect = 2e-28
 Identities = 78/489 (15%), Positives = 145/489 (29%), Gaps = 92/489 (18%)

Query: 43  NNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLN 102
           +    +    N E+ E+        +  +  + L+L+        +PE      +L  L 
Sbjct: 44  SEWERNAPPGNGEQREMAVSRLRDCL-DRQAHELELNNLGLS--SLPELPP---HLESLV 97

Query: 103 LSGAGFAGWIPHQLGNLSNLMHLDLSGSY-------------YELRVEDISWLAGPSLLE 149
            S       +P    +L +L+  + +                   ++E +  L   S L+
Sbjct: 98  ASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLK 156

Query: 150 HLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFG 209
            +D  +  L K      + +  PSL+ +   + +L     L   N   L A+    N   
Sbjct: 157 IIDVDNNSLKK------LPDLPPSLEFIAAGNNQLEELPELQ--NLPFLTAIYADNNSL- 207

Query: 210 KTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFD 269
              +P        L  +   +NI         +NL  L  +    N    T+ D   +  
Sbjct: 208 -KKLPD---LPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLL-KTLPDLPPS-- 258

Query: 270 DLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLF 329
            LE L++  N L          +LTF+   +  F+ L +                L  L 
Sbjct: 259 -LEALNVRDNYLTDLPELPQ--SLTFLDVSENIFSGLSELPPN------------LYYLN 303

Query: 330 LRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISE 389
                   ++ +   L  +L  L +S+N +   LP        L  L  S N+L  +   
Sbjct: 304 ASSN----EIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLAEVPEL 355

Query: 390 IHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKL 449
               NL +L   +   N     +     P        LR        P    +   L +L
Sbjct: 356 P--QNLKQL---HVEYN----PLRE--FPDIPESVEDLRMNSHLAEVPELPQN---LKQL 401

Query: 450 DISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRS 509
            +    +                 PD   +   +  L + + +       +  T   L  
Sbjct: 402 HVETNPLR--------------EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLED 444

Query: 510 LNLRSNRLS 518
                +   
Sbjct: 445 DVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.4 bits (238), Expect = 6e-21
 Identities = 78/472 (16%), Positives = 138/472 (29%), Gaps = 123/472 (26%)

Query: 271 LEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFL 330
           L+      + L          N+        +++E  ++           A   L     
Sbjct: 13  LQEPLRHSSNLTEMPVEAE--NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-- 68

Query: 331 RGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEI 390
                         L +  H L L++  +S  LP        L  L  S N+L  +    
Sbjct: 69  --------------LDRQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLTELPELP 110

Query: 391 HFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLD 450
              +L  L     N  +++            L  L + +  L    P  L +   L  +D
Sbjct: 111 --QSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQL-EKLPE-LQNSSFLKIID 159

Query: 451 ISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSL 510
           + N  +  + P                   P L  +  GNN+    +P  +  L  L ++
Sbjct: 160 VDNNSLKKL-PDLP----------------PSLEFIAAGNNQLE-ELP-ELQNLPFLTAI 200

Query: 511 NLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIF 570
              +N L  +     +    L ++  G N     +P    +    L  +   +N L  + 
Sbjct: 201 YADNNSLKKL----PDLPLSLESIVAGNNILE-ELPEL--QNLPFLTTIYADNNLLKTLP 253

Query: 571 PIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEI 630
                   SL+ L+V  N L+  +P+   +                              
Sbjct: 254 D----LPPSLEALNVRDNYLT-DLPELPQS------------------------------ 278

Query: 631 SLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETI 690
                            +  +D+S N FS  +     NL     LN S N    +I    
Sbjct: 279 -----------------LTFLDVSENIFS-GLSELPPNLY---YLNASSN----EIRSLC 313

Query: 691 GNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQS 742
               S+E L++S N++  ++P     L     L  S N L         L+ 
Sbjct: 314 DLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEVPELPQNLKQ 361

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.9 bits (234), Expect = 2e-20
 Identities = 66/391 (16%), Positives = 124/391 (31%), Gaps = 101/391 (25%)

Query: 363 LPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQL 422
           + P +   + L      ++NL  M  E    N+     +Y   +              ++
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEA--ENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 423 LALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPD 482
              RLR C             +   +L+++N  +S              ++P+     P 
Sbjct: 61  AVSRLRDCLD-----------RQAHELELNNLGLS--------------SLPE---LPPH 92

Query: 483 LRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFV 542
           L  L    N  T  +P    +L SL   N     LS + P        L  L +  N+  
Sbjct: 93  LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE 144

Query: 543 GNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFT 602
             +P    +  S L+I+++ +N L  +         SL+ +    N+L   +P+  N   
Sbjct: 145 -KLPEL--QNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE-ELPELQN--- 193

Query: 603 AMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEI 662
                                                     L  + +I    N+   ++
Sbjct: 194 ------------------------------------------LPFLTAIYADNNSLK-KL 210

Query: 663 PMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNH 722
           P    +L   +S+   +N  + ++PE + N+  + ++    N +   +P    SL     
Sbjct: 211 PDLPLSL---ESIVAGNNI-LEELPE-LQNLPFLTTIYADNNLLK-TLPDLPPSLE---A 261

Query: 723 LNLSDNKLVGKIPSSTQLQSFGASSITGNDL 753
           LN+ DN L         L     S    + L
Sbjct: 262 LNVRDNYLTDLPELPQSLTFLDVSENIFSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 20/135 (14%)

Query: 637 FMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGN---- 692
           F+   N     ++      +N + E+P+E  N+K       + + +    P   G     
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 693 ---------MRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQS 742
                     R    L+L+   +S  +P+       L  L  S N L  ++P     L+S
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKS 115

Query: 743 FGASSITGNDLCGAP 757
               +     L   P
Sbjct: 116 LLVDNNNLKALSDLP 130

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  129 bits (326), Expect = 4e-32
 Identities = 89/412 (21%), Positives = 147/412 (35%), Gaps = 55/412 (13%)

Query: 196 SSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLS 253
           + +N +DLS N      +    F  L DL FL +        I +  F+ L+SL  L L 
Sbjct: 30  AHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 254 YNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGL-ENLTFIKTLDLSFNELGQDISE 312
           YNQF    +  F+   +LE L+L    L G + S    + LT ++ L L  N + +    
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK---- 143

Query: 313 ILDIISACAAF----ELESLFLRGCKIS-----------GQLTNQLGLFKNLHTLALSDN 357
               I   + F        L L   K+            G+    L L        +++ 
Sbjct: 144 ----IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI-TLQDMNEY 198

Query: 358 SVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWV 417
            +         + +S+T LDLS N     +++  F  +          ++     +S   
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

Query: 418 PPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW 477
             F+             +F         +   D+S ++I  +            ++    
Sbjct: 259 TNFKDP----------DNFTFKGLEASGVKTCDLSKSKIFAL----------LKSVFS-- 296

Query: 478 MNWPDLRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDM 536
            ++ DL  L L  N+    I  +    LT L  LNL  N L  I    FEN  +L  LD+
Sbjct: 297 -HFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354

Query: 537 GENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYN 588
             N     +          L+ L L +N+L  +       L+SLQ + +  N
Sbjct: 355 SYNHI-RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  115 bits (291), Expect = 1e-27
 Identities = 72/354 (20%), Positives = 131/354 (37%), Gaps = 30/354 (8%)

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
             + Y+DLS N         FS   DL++L +        I +     L+ +  L L +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 305 ELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLH---TLALSDNSVSG 361
           +  Q  +   + ++      LE L L  C + G        FK L     L L DN++  
Sbjct: 90  QFLQLETGAFNGLA-----NLEVLTLTQCNLDG-AVLSGNFFKPLTSLEMLVLRDNNIKK 143

Query: 362 PLPPAS--GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPP 419
            + PAS    +     LDL+ N +   I E    N     F     +S+           
Sbjct: 144 -IQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITL--------- 192

Query: 420 FQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMN 479
                  +    LG            ++ LD+S     + + + F+++I    I    ++
Sbjct: 193 -----QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 480 WPDLRVLNLGNNKFTGSIPISMGTL--TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMG 537
                  + G+  F      +   L  + +++ +L  +++  ++   F + + L  L + 
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 538 ENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS 591
           +NE    I        + L  LNL  N L  I      +L  L++LD++YN + 
Sbjct: 308 QNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (275), Expect = 1e-25
 Identities = 83/389 (21%), Positives = 129/389 (33%), Gaps = 69/389 (17%)

Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVF 225
               L SL +LKL   +       A    ++L  L L+        +    F  L+ L  
Sbjct: 74  TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133

Query: 226 LDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFD--DLEYLSLGYNRLQ 282
           L L  N  +   P   F N+     LDL++N+  S   +   NF       L L    LQ
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193

Query: 283 -------GTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKI 335
                  G          T I TLDLS N   + +++      A A  +++SL L     
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF--DAIAGTKIQSLILSNSYN 251

Query: 336 SGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNL 395
            G        FK+                    E S +   DLS + +   + +  F + 
Sbjct: 252 MGSSFGH-TNFKDPDNFTFKGL-----------EASGVKTCDLSKSKIF-ALLKSVFSHF 298

Query: 396 TELAFFYANGNSVNFKINSKWVPP--FQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISN 453
           T+L       N    +IN   +    F  L                     HL KL++S 
Sbjct: 299 TDLEQLTLAQN----EINK--IDDNAFWGL--------------------THLLKLNLSQ 332

Query: 454 TRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-GTLTSLRSLNL 512
             +  I  R F N                L VL+L  N    ++       L +L+ L L
Sbjct: 333 NFLGSIDSRMFENL-------------DKLEVLDLSYNHIR-ALGDQSFLGLPNLKELAL 378

Query: 513 RSNRLSGIIPVPFENCSQLVALDMGENEF 541
            +N+L  +    F+  + L  + +  N +
Sbjct: 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.4 bits (248), Expect = 4e-22
 Identities = 88/525 (16%), Positives = 160/525 (30%), Gaps = 149/525 (28%)

Query: 211 TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTIS-DCFSNFD 269
             +P      + + ++DLS N         F  L  L++L +        I  + F    
Sbjct: 23  HQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 270 DLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLF 329
            L  L L YN+    + +     L  ++ L L+   L                   +   
Sbjct: 80  SLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNL-------------------DGAV 119

Query: 330 LRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISE 389
           L G             FK L                     +SL  L L +NN+  +   
Sbjct: 120 LSG-----------NFFKPL---------------------TSLEMLVLRDNNIKKIQPA 147

Query: 390 IHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKL 449
             F N+          N    K+ S  +    LL                    KH + L
Sbjct: 148 SFFLNMRRFHVLDLTFN----KVKS--ICEEDLLNF----------------QGKHFTLL 185

Query: 450 DISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIP---ISMGTLTS 506
            +S+  + D+    +W    +   P    +   +  L+L  N F  S+          T 
Sbjct: 186 RLSSITLQDM--NEYWLGWEKCGNPFKNTS---ITTLDLSGNGFKESMAKRFFDAIAGTK 240

Query: 507 LRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKL 566
           ++SL L ++             +     D           T+ G   S ++  +L  +K+
Sbjct: 241 IQSLILSNSY----NMGSSFGHTNFKDPDNF---------TFKGLEASGVKTCDLSKSKI 287

Query: 567 HGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYI 626
             +      H + L+ L +A N ++                        I   +F     
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEIN-----------------------KIDDNAFWG--- 321

Query: 627 VEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGK 685
                             L  +  +++S N     I   +  NL  L+ L+LS+N  I  
Sbjct: 322 ------------------LTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNH-IRA 361

Query: 686 IPE-TIGNMRSIESLDLSGNQISGKIPQSM-SSLSFLNHLNLSDN 728
           + + +   + +++ L L  NQ+   +P  +   L+ L  + L  N
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 84/363 (23%), Positives = 130/363 (35%), Gaps = 41/363 (11%)

Query: 51  ELNLERSELGGKINP-ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGF- 108
            L +E+   G  I       L  L +L L  N F  ++       + NL  L L+     
Sbjct: 58  FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE-TGAFNGLANLEVLTLTQCNLD 116

Query: 109 AGWIPHQL-GNLSNLMHLDLSGSYYELR-VEDISWLAGPSLLEHLDTSD--VDLIKASDW 164
              +       L++L  L L  +   ++ ++  S+         LD +   V  I   D 
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDN--NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174

Query: 165 L------LVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGN------------ 206
           L        +  L S+ +  +    L           +S+  LDLSGN            
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234

Query: 207 LFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNL--TSLRYLDLSYNQFNSTISDC 264
               T I S +   S  +        F+ P    FK L  + ++  DLS ++  + +   
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294

Query: 265 FSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFE 324
           FS+F DLE L+L  N +   I       LT +  L+LS N LG   S + + +       
Sbjct: 295 FSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK----- 348

Query: 325 LESLFLRGCKISGQLTNQLGLFK---NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNN 381
           LE L L    I   L +    F    NL  LAL  N +          L+SL  + L  N
Sbjct: 349 LEVLDLSYNHIR-ALGD--QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

Query: 382 NLN 384
             +
Sbjct: 406 PWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 81/400 (20%), Positives = 132/400 (33%), Gaps = 86/400 (21%)

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
           + + Y+DLS N++   ++E  F  L +L F      +    I +     F+ L       
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNN---TFRGL------- 78

Query: 431 HLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN 490
                          L  L +   +   +    F                 +L VL L  
Sbjct: 79  -------------SSLIILKLDYNQFLQLETGAFNGL-------------ANLEVLTLTQ 112

Query: 491 NKFTGSIPISMGT---LTSLRSLNLRSNRLSGIIPVP-FENCSQLVALDMGENEFVGNIP 546
                   +S      LTSL  L LR N +  I P   F N  +   LD+  N+   +I 
Sbjct: 113 CNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SIC 170

Query: 547 --TWMGERFSRLRILNLRSNKLHGIFPIQIC--------HLSSLQILDVAYNRLSGSVPK 596
               +  +     +L L S  L  +    +           +S+  LD++ N    S+ K
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 597 --------------CINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYN 642
                          ++N   M +   H   K   + +F+        +  +       +
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL-----SKS 285

Query: 643 SI----------LNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETI- 690
            I             +  + ++ N  + +I       L  L  LNLS N F+G I   + 
Sbjct: 286 KIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMF 343

Query: 691 GNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKL 730
            N+  +E LDLS N I     QS   L  L  L L  N+L
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 40/247 (16%), Positives = 81/247 (32%), Gaps = 22/247 (8%)

Query: 505 TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN 564
             +  ++L  N ++ +    F     L  L + +      I        S L IL L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 565 KLHGIFPIQICHLSSLQILDVAYNRLSGSV--PKCINNFTAMATIG-SHHQVKAIY-HAS 620
           +   +       L++L++L +    L G+V         T++  +    + +K I   + 
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 621 FENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVT--NLKGLQSLNLS 678
           F N      + L        +N + ++                   T   L  +   +++
Sbjct: 150 FLNMRRFHVLDL-------TFNKVKSICEED------LLNFQGKHFTLLRLSSITLQDMN 196

Query: 679 HNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSL---SFLNHLNLSDNKLVGKIP 735
                 +         SI +LDLSGN     + +        + +  L LS++  +G   
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 736 SSTQLQS 742
             T  + 
Sbjct: 257 GHTNFKD 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  126 bits (318), Expect = 5e-32
 Identities = 48/372 (12%), Positives = 100/372 (26%), Gaps = 80/372 (21%)

Query: 370 LSSLTYLDLSN-NNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLR 428
            S    L       L      +             N     ++             +  R
Sbjct: 11  SSGRENLYFQGSTALRPYHDVL--SQWQRHYNADRNRWHSAWRQ-----ANSNNPQIETR 63

Query: 429 SCHLGPHFPSWLH--SQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVL 486
           +          L   +Q     L++ +  +                 PD       L+ +
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLP--------------QFPDQAFRLSHLQHM 109

Query: 487 NLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIP 546
            +        +P +M     L +L L  N L   +P    + ++L  L +     +  +P
Sbjct: 110 TIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167

Query: 547 TWMG--------ERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598
             +         +    L+ L L    +  + P  I +L +L+ L +  + LS ++   I
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 599 NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNF 658
           ++   +                                              +D+     
Sbjct: 226 HHLPKL--------------------------------------------EELDLRGCTA 241

Query: 659 SGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS 718
               P        L+ L L   S +  +P  I  +  +E LDL G     ++P  ++ L 
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 719 FLNHLNLSDNKL 730
               + +  +  
Sbjct: 302 ANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (293), Expect = 1e-28
 Identities = 60/372 (16%), Positives = 112/372 (30%), Gaps = 68/372 (18%)

Query: 220 LSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
            S    L    +    P  D           D +        +    N ++ +  +    
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGR 66

Query: 280 RLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQL 339
            L+ T   +          L+L    L     +  D     +   L+ + +    +  +L
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPL----PQFPDQAFRLSH--LQHMTIDAAGLM-EL 119

Query: 340 TNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
            + +  F  L TL L+ N +   LP +   L+ L  L +                LTEL 
Sbjct: 120 PDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACP-----------ELTEL- 166

Query: 400 FFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
                              P  L +                    +L  L +  T I   
Sbjct: 167 -------------------PEPLASTDA---------SGEHQGLVNLQSLRLEWTGIR-- 196

Query: 460 IPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG 519
                       ++P    N  +L+ L + N+  + ++  ++  L  L  L+LR      
Sbjct: 197 ------------SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 520 IIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSS 579
             P  F   + L  L + +   +  +P  +  R ++L  L+LR        P  I  L +
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 580 LQILDVAYNRLS 591
             I+ V  +  +
Sbjct: 303 NCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  114 bits (288), Expect = 5e-28
 Identities = 54/392 (13%), Positives = 116/392 (29%), Gaps = 100/392 (25%)

Query: 325 LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384
            E+L+ +G        + L  ++  +    +    +          ++      +   L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALK 69

Query: 385 GMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQK 444
                +   + T+                         +AL LRS  L P FP       
Sbjct: 70  ATADLL--EDATQP----------------------GRVALELRSVPL-PQFPDQAFRLS 104

Query: 445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTL 504
           HL  + I    +                +PD    +  L  L L  N    ++P S+ +L
Sbjct: 105 HLQHMTIDAAGLM--------------ELPDTMQQFAGLETLTLARNPLR-ALPASIASL 149

Query: 505 TSLRSLNLRS-NRLSGI--------IPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555
             LR L++R+   L+ +             +    L +L +       ++P  +      
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQN 207

Query: 556 LRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKA 615
           L+ L +R++ L  +    I HL  L+ LD+       + P                    
Sbjct: 208 LKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRA------------- 253

Query: 616 IYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSL 675
                                          L + + +   +    +P+++  L  L+ L
Sbjct: 254 ------------------------------PL-KRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 676 NLSHNSFIGKIPETIGNMRSIESLDLSGNQIS 707
           +L     + ++P  I  + +   + +  +  +
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (281), Expect = 4e-27
 Identities = 50/327 (15%), Positives = 101/327 (30%), Gaps = 55/327 (16%)

Query: 422 LLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWP 481
              L  +       +   L   +     D +    +                     N  
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----------------NSN 56

Query: 482 DLRVLNLGNNKFTGSIP-ISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
           + ++          +   +   T     +L LRS  L    P      S L  + +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
            +  +P  M  +F+ L  L L  N L  + P  I  L+ L+ L +        +P+ + +
Sbjct: 116 LM-ELPDTMQ-QFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSI--------- 651
             A         ++++                      +E+  I +L  SI         
Sbjct: 173 TDASGEHQGLVNLQSLR---------------------LEWTGIRSLPASIANLQNLKSL 211

Query: 652 DISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSG-NQISGKI 710
            I  +  S  +   + +L  L+ L+L   + +   P   G    ++ L L   + +   +
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TL 269

Query: 711 PQSMSSLSFLNHLNLSDNKLVGKIPSS 737
           P  +  L+ L  L+L     + ++PS 
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSL 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (280), Expect = 5e-27
 Identities = 50/330 (15%), Positives = 101/330 (30%), Gaps = 31/330 (9%)

Query: 70  LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG 129
                 L   G+        + +         + +          +  N +N      +G
Sbjct: 11  SSGRENLYFQGS-TALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65

Query: 130 SYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAP 189
              +   + +     P     L+   V L +  D       L  L+ + + +  L    P
Sbjct: 66  RALKATADLLEDATQPGR-VALELRSVPLPQFPD---QAFRLSHLQHMTIDAAGLMEL-P 120

Query: 190 LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN---------IFRGPIPDG 240
                F+ L  L L+ N     ++P+ +  L+ L  L + +          +        
Sbjct: 121 DTMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 241 FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLD 300
            + L +L+ L L +     ++    +N  +L+ L +  + L     +I   +L  ++ LD
Sbjct: 179 HQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELD 235

Query: 301 LS-FNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSV 359
           L     L         I    A   L+ L L+ C     L   +     L  L L     
Sbjct: 236 LRGCTAL----RNYPPIFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 360 SGPLPPASGELSSLTYLDLSNNNLNGMISE 389
              LP    +L +   + +  +    +   
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (276), Expect = 2e-26
 Identities = 56/371 (15%), Positives = 107/371 (28%), Gaps = 70/371 (18%)

Query: 238 PDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIK 297
                + +    L    +   + +          +           +       N    +
Sbjct: 5   HHHHHHSSGRENLYFQGS---TALRPYHDVLSQWQRHYNADRNRWHSAWR--QANSNNPQ 59

Query: 298 TLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDN 357
               +   L        D++         +L LR   +  Q  +Q     +L  + +   
Sbjct: 60  IETRTGRAL----KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 358 SVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWV 417
            +   LP    + + L  L L+ N L  + + I   +L                      
Sbjct: 115 GLME-LPDTMQQFAGLETLTLARNPLRALPASI--ASLN--------------------- 150

Query: 418 PPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW 477
                                       L +L I        +P      +         
Sbjct: 151 ---------------------------RLRELSIRACPELTELP----EPLASTDASGEH 179

Query: 478 MNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMG 537
               +L+ L L       S+P S+  L +L+SL +R++ LS +      +  +L  LD+ 
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLR 237

Query: 538 ENEFVGNIPTWMGERFSRLRILNLRS-NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK 596
               + N P   G   + L+ L L+  + L  + P+ I  L+ L+ LD+        +P 
Sbjct: 238 GCTALRNYPPIFGG-RAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 597 CINNFTAMATI 607
            I    A   I
Sbjct: 296 LIAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (261), Expect = 2e-24
 Identities = 56/377 (14%), Positives = 120/377 (31%), Gaps = 74/377 (19%)

Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNL 207
            E+L       ++        + L   +          H      AN ++      +G  
Sbjct: 14  RENLYFQGSTALRP-----YHDVLSQWQRHYNADRNRWHS-AWRQANSNNPQIETRTGRA 67

Query: 208 FGKTSIPSWVFGLSD--LVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCF 265
               +    +   +    V L+L S       PD    L+ L+++ +        + D  
Sbjct: 68  L--KATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLME-LPDTM 123

Query: 266 SNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFEL 325
             F  LE L+L  N L+   +SI   +L  ++ L +       +++E+ + +++      
Sbjct: 124 QQFAGLETLTLARNPLRALPASIA--SLNRLRELSIRAC---PELTELPEPLAST----- 173

Query: 326 ESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNG 385
                         + +     NL +L L    +   LP +   L +L  L + N+ L+ 
Sbjct: 174 ------------DASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA 220

Query: 386 MISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKH 445
           +   I   +L                         +L  L LR C    ++P     +  
Sbjct: 221 LGPAI--HHLP------------------------KLEELDLRGCTALRNYPPIFGGRAP 254

Query: 446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLT 505
           L +L + +            +++   T+P        L  L+L        +P  +  L 
Sbjct: 255 LKRLILKD-----------CSNL--LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 506 SLRSLNLRSNRLSGIIP 522
           +   + +  +  + +  
Sbjct: 302 ANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (261), Expect = 2e-24
 Identities = 63/375 (16%), Positives = 109/375 (29%), Gaps = 61/375 (16%)

Query: 89  PEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLL 148
             +         L   G+         L       + D +      R       A  +  
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN------RWHSAWRQANSNNP 58

Query: 149 EHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLF 208
           +    +   L   +D L      P    L+L S  L  F P  +   S L  + +     
Sbjct: 59  QIETRTGRALKATADLLEDATQ-PGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGL 116

Query: 209 GKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNF 268
               +P  +   + L  L L+ N  R  +P    +L  LR L +      + + +  ++ 
Sbjct: 117 --MELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 269 DDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESL 328
           D                   GL NL    +L L +  +    + I ++ +      L+SL
Sbjct: 174 DASGEHQ-------------GLVNLQ---SLRLEWTGIRSLPASIANLQN------LKSL 211

Query: 329 FLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMI- 387
            +R   +S  L   +     L  L L   +     PP  G  + L  L L + +    + 
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 388 SEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLS 447
            +I    LT                        QL  L LR C      PS +       
Sbjct: 271 LDI--HRLT------------------------QLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 448 KLDISNTRISDIIPR 462
            + +     + +   
Sbjct: 305 IILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 8e-22
 Identities = 49/290 (16%), Positives = 90/290 (31%), Gaps = 31/290 (10%)

Query: 42  CNNITGHVLELNLERSELGGKINPALVD----LKHLNL--LDLSGNDFQGIQIPEYIGSM 95
            ++        N +     G+   A  D            L+L        Q P+    +
Sbjct: 46  WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP--QFPDQAFRL 103

Query: 96  DNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRV--EDIS--------WLAGP 145
            +L+++ +  AG    +P  +   + L  L L+ +   LR     I+         +   
Sbjct: 104 SHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARN--PLRALPASIASLNRLRELSIRAC 160

Query: 146 SLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSG 205
             L  L       + ++D       L +L+ L+L    +    P + AN  +L +L +  
Sbjct: 161 PELTELPEP----LASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRN 215

Query: 206 NLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCF 265
           +    +++   +  L  L  LDL         P  F     L+ L L       T+    
Sbjct: 216 SPL--SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273

Query: 266 SNFDDLEYLSLGYNRLQGTI-SSIGLENLTFIKTLDLSFNELGQDISEIL 314
                LE L L        + S I    L     + +  +   Q      
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIA--QLPANCIILVPPHLQAQLDQHRP 321

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  129 bits (325), Expect = 1e-31
 Identities = 90/452 (19%), Positives = 149/452 (32%), Gaps = 48/452 (10%)

Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL 226
            I SL  L++L +   ++ +           L  LDLS N      I        +L  L
Sbjct: 40  DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL--VKISCH--PTVNLKHL 95

Query: 227 DLSSNIFRG-PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285
           DLS N F   PI   F N++ L++L LS      +          L    +     +   
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS---VLPIAHLNISKVLLVLGETYG 152

Query: 286 SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGC-----------K 334
                E L    T  L            +  +S      LE   ++              
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 335 ISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFG- 393
           ++   TN       L+ +  + NS    L       +++ Y  +SN  L G +    F  
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW--HTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 394 ---NLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLD 450
              +L  L+      +   F  +  +     +                          LD
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 451 ISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMG---TLTSL 507
            SN  ++D +                  +  +L  L L  N+    +         + SL
Sbjct: 331 FSNNLLTDTVFENC-------------GHLTELETLILQMNQLK-ELSKIAEMTTQMKSL 376

Query: 508 RSLNLRSNRLSGIIP-VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKL 566
           + L++  N +S             L++L+M  N     I   +     R+++L+L SNK+
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKI 433

Query: 567 HGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598
             I P Q+  L +LQ L+VA N+L  SVP  I
Sbjct: 434 KSI-PKQVVKLEALQELNVASNQLK-SVPDGI 463

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  126 bits (319), Expect = 7e-31
 Identities = 88/537 (16%), Positives = 160/537 (29%), Gaps = 103/537 (19%)

Query: 196 SSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY 254
                L++S N    + + +     LS L  L +S N  +      FK    L YLDLS+
Sbjct: 21  QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 255 NQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEIL 314
           N+          N   L++L L +N            N++ +K L LS   L +     +
Sbjct: 79  NKLVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 315 DIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLT 374
             ++      +                     ++ +T +L     +        ++S  T
Sbjct: 136 AHLNISKVLLVLGETYG-------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 375 YLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGP 434
             +L  +N+                    N  S    I +K     +L  L L +     
Sbjct: 189 VANLELSNIKC--------------VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET-- 232

Query: 435 HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT 494
              +W    + L  +  +      I        +          +   L +  + ++ F 
Sbjct: 233 ---TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 495 GSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFS 554
                     +++   N   +    +  +     S                         
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF----------------------- 326

Query: 555 RLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVK 614
               L+  +N L         HL+ L+ L +  N+L   + K     T M ++       
Sbjct: 327 --LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSL------- 376

Query: 615 AIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQ 673
                                             + +DIS N+ S +      +  K L 
Sbjct: 377 ----------------------------------QQLDISQNSVSYDEKKGDCSWTKSLL 402

Query: 674 SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKL 730
           SLN+S N     I   +     I+ LDL  N+I   IP+ +  L  L  LN++ N+L
Sbjct: 403 SLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (291), Expect = 2e-27
 Identities = 95/490 (19%), Positives = 168/490 (34%), Gaps = 49/490 (10%)

Query: 71  KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGS 130
           +   +L++S N    +     I S+  LR L +S                 L +LDLS +
Sbjct: 21  QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPL 190
             +L             L+HLD S  +   A        ++  LK L L +  L   + L
Sbjct: 80  --KLVKISCHPTVN---LKHLDLSF-NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 191 ASANFSSLNALDLSGNLFGKTSIPSW--VFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR 248
             A+ +    L + G  +G+   P     F    L  +  ++  F   +    K + +L 
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 249 YLDLSYNQFNSTISDCFSNF------DDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLS 302
             ++     ++  S   S          L  L+L             L+ +        S
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 303 FNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF---KNLHTLALSDNSV 359
            + +              +   L++L +           Q  ++    N++    + +  
Sbjct: 254 ISNVKLQGQLDFRDFD-YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 360 SGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPP 419
                    ++S   +LD SNN L   + E   G+LTEL       N    K  SK    
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMN--QLKELSKIAEM 369

Query: 420 F----QLLALRLRSCHLGPHFP----SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQD 471
                 L  L +    +         SW  S   L  L++S+  ++D I R         
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKS---LLSLNMSSNILTDTIFRCLP------ 420

Query: 472 TIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQL 531
                    P ++VL+L +NK   SIP  +  L +L+ LN+ SN+L  +    F+  + L
Sbjct: 421 ---------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470

Query: 532 VALDMGENEF 541
             + +  N +
Sbjct: 471 QKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (265), Expect = 4e-24
 Identities = 60/329 (18%), Positives = 117/329 (35%), Gaps = 26/329 (7%)

Query: 70  LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG 129
            + L+++  +  +F  I     + ++ NL   N+          + L  L+ L       
Sbjct: 165 TESLHIVFPTNKEFHFIL-DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP-KL 222

Query: 130 SYYELRVEDISW--------LAGPSLLEHLDTSDVDLIKASDWL---LVINSLPSLKVLK 178
           S   L   + +W        L   + + +   S+V L    D+        SL +L + +
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282

Query: 179 LFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFG-LSDLVFLDLSSNIFRGPI 237
           + S             FS++N  + + +  G   +       +S  + LD S+N+    +
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVS--GTRMVHMLCPSKISPFLHLDFSNNLLTDTV 340

Query: 238 PDGFKNLTSLRYLDLSYNQFNS--TISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTF 295
            +   +LT L  L L  NQ      I++  +    L+ L +  N +              
Sbjct: 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400

Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
           + +L++S N L   I   L          ++ L L   KI   +  Q+   + L  L ++
Sbjct: 401 LLSLNMSSNILTDTIFRCLPP-------RIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452

Query: 356 DNSVSGPLPPASGELSSLTYLDLSNNNLN 384
            N +          L+SL  + L  N  +
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  100 bits (251), Expect = 3e-22
 Identities = 76/462 (16%), Positives = 161/462 (34%), Gaps = 88/462 (19%)

Query: 70  LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG 129
             +L  LDLS N F  + I +  G+M  L++L LS           + +L+    L + G
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 130 SYYELRVEDIS----WLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLH 185
             Y  + +             ++   +     ++  S   +    L ++K +   +   +
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 186 HFAPLASANFS------SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPD 239
             + LA    +      +LN ++ + N F +     W    + + +  +S+   +G +  
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW---HTTVWYFSISNVKLQGQLDF 265

Query: 240 G-----FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLT 294
                   +L +L    +  + F    S  +  F ++   +   +  +  +  +    ++
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKIS 324

Query: 295 FIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLAL 354
               LD S N L   + E    ++     ELE+L L+  ++  +L+    +         
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLT-----ELETLILQMNQLK-ELSKIAEMTTQ------ 372

Query: 355 SDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINS 414
                          + SL  LD+S N+++    +                         
Sbjct: 373 ---------------MKSLQQLDISQNSVSYDEKKGDCSWTK------------------ 399

Query: 415 KWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIP 474
                  LL+L + S  L       L  +  +  LD+ + +I               +IP
Sbjct: 400 ------SLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIK--------------SIP 437

Query: 475 DCWMNWPDLRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSN 515
              +    L+ LN+ +N+   S+P  +   LTSL+ + L +N
Sbjct: 438 KQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 74/484 (15%), Positives = 151/484 (31%), Gaps = 105/484 (21%)

Query: 250 LDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQD 309
           +D S N       D          L++  N +   + +  + +L+ ++ L +S N + Q 
Sbjct: 5   VDRSKNGLIHVPKDLSQK---TTILNISQNYIS-ELWTSDILSLSKLRILIISHNRI-QY 59

Query: 310 ISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGE 369
           +          + F+                        L  L LS N +   +      
Sbjct: 60  LDI--------SVFK-------------FNQE-------LEYLDLSHNKLVK-IS--CHP 88

Query: 370 LSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRS 429
             +L +LDLS N  + +     FGN+++L F   +       +    V P   L      
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT----HLEKSSVLPIAHL------ 138

Query: 430 CHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLG 489
                              L +  T      P                 N   L ++   
Sbjct: 139 -------------NISKVLLVLGETYGEKEDPEGL-----------QDFNTESLHIVFPT 174

Query: 490 NNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWM 549
           N +F   + +S+ T+ +L   N++               ++L       N          
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN---------- 224

Query: 550 GERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGS 609
                 L  +    N    I   Q+   +++    ++  +L G +     ++       S
Sbjct: 225 ----LTLNNIETTWNSFIRIL--QLVWHTTVWYFSISNVKLQGQLDFRDFDY-------S 271

Query: 610 HHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TN 668
              +KA+      +D      S + + F          +++  +S       + M   + 
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIF------SNMNIKNFTVSGTRM---VHMLCPSK 322

Query: 669 LKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS--GKIPQSMSSLSFLNHLNLS 726
           +     L+ S+N     + E  G++  +E+L L  NQ+    KI +  + +  L  L++S
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 727 DNKL 730
            N +
Sbjct: 383 QNSV 386

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 47/238 (19%), Positives = 84/238 (35%), Gaps = 12/238 (5%)

Query: 48  HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAG 107
            +  + L+        + +   LK L++  +  + F   Q   Y     N+   N + +G
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI-FSNMNIKNFTVSG 311

Query: 108 FAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLV 167
                      +S  +HLD S     L           + LE L      L + S    +
Sbjct: 312 TRMVHMLCPSKISPFLHLDFS--NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 168 INSLPSLKVLKLFSCKLHHFAPLAS-ANFSSLNALDLSGNLFGKTSIPSWVFG--LSDLV 224
              + SL+ L +    + +       +   SL +L++S N      +   +F      + 
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-----ILTDTIFRCLPPRIK 424

Query: 225 FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ 282
            LDL SN  +  IP     L +L+ L+++ NQ  S     F     L+ + L  N   
Sbjct: 425 VLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 4e-07
 Identities = 46/237 (19%), Positives = 76/237 (32%), Gaps = 63/237 (26%)

Query: 40  VVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLR 99
           ++C +     L L+   + L   +      L  L  L L  N  +  ++ +         
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK--ELSKIAEMTT--- 371

Query: 100 YLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLI 159
                              + +L  LD+S +                            +
Sbjct: 372 ------------------QMKSLQQLDISQN---------------------------SV 386

Query: 160 KASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFG 219
              +     +   SL  L + S  L             +  LDL  N     SIP  V  
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIF--RCLPPRIKVLDLHSNKI--KSIPKQVVK 442

Query: 220 LSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLS 275
           L  L  L+++SN  +  +PDG F  LTSL+ + L  N +     DC  +   ++YLS
Sbjct: 443 LEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPW-----DC--SCPRIDYLS 491

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (311), Expect = 4e-31
 Identities = 59/370 (15%), Positives = 119/370 (32%), Gaps = 81/370 (21%)

Query: 212 SIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDL 271
           +I       +      ++ +  +  +    ++  +++ LDLS N  +   +   + F  L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 272 EYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLR 331
           E L+L  N L  T+    L  L   +TLDL+ N     + E+L   S      +E+L   
Sbjct: 61  ELLNLSSNVLYETLDLESLSTL---RTLDLNNNY----VQELLVGPS------IETLHAA 107

Query: 332 GCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIH 391
              IS          +    + L++N ++       G  S + YLDL  N ++ +     
Sbjct: 108 NNNIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 392 FGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDI 451
             +                                                   L  L++
Sbjct: 165 AASSD------------------------------------------------TLEHLNL 176

Query: 452 SNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLN 511
               I D+  +  +                 L+ L+L +NK    +     +   +  ++
Sbjct: 177 QYNFIYDVKGQVVFAK---------------LKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 512 LRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFP 571
           LR+N+L  +I         L   D+  N F          +  R++ +  ++ K      
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 572 IQICHLSSLQ 581
            + C + +L 
Sbjct: 280 EEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  116 bits (293), Expect = 8e-29
 Identities = 45/320 (14%), Positives = 101/320 (31%), Gaps = 48/320 (15%)

Query: 88  IPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSL 147
           I E   + +  +   ++ +     +     +  N+  LDLSG                + 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG----------------NP 45

Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNL 207
           L  +  +             +     L++L L S  L+    L   + S+L  LDL+ N 
Sbjct: 46  LSQISAA------------DLAPFTKLELLNLSSNVLYETLDL--ESLSTLRTLDLNNNY 91

Query: 208 FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSN 267
                +         +  L  ++N     +          + + L+ N+           
Sbjct: 92  V--QELLV----GPSIETLHAANNNISR-VSCS--RGQGKKNIYLANNKITMLRDLDEGC 142

Query: 268 FDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELES 327
              ++YL L  N +     +    +   ++ L+L +N +  D+   +          L++
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQVVFAK------LKT 195

Query: 328 LFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMI 387
           L L   K++  +  +      +  ++L +N +   +  A     +L + DL  N  +   
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 388 SEIHFGNLTELAFFYANGNS 407
               F     +         
Sbjct: 254 LRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  111 bits (280), Expect = 5e-27
 Identities = 46/333 (13%), Positives = 104/333 (31%), Gaps = 71/333 (21%)

Query: 421 QLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNW 480
           +    ++    L     S   S  ++ +LD+S   +S I                     
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF------------- 57

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
             L +LNL +N    ++ +   +L++LR+L+L +N +  +          +  L    N 
Sbjct: 58  TKLELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANN- 109

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
              NI      R    + + L +NK+  +  +     S +Q LD+  N +          
Sbjct: 110 ---NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID--------T 158

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
                   S                                    + +  +++  N    
Sbjct: 159 VNFAELAAS-----------------------------------SDTLEHLNLQYNFIY- 182

Query: 661 EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL 720
           ++  +      L++L+LS N  +  +     +   +  + L  N++   I +++     L
Sbjct: 183 DVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239

Query: 721 NHLNLSDNKLVGKIPSSTQLQSFGASSITGNDL 753
            H +L  N            ++    ++    +
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (270), Expect = 1e-25
 Identities = 54/264 (20%), Positives = 89/264 (33%), Gaps = 20/264 (7%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
              +  S L   +        ++  LDLSGN    I     +     L  LNLS      
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYE 72

Query: 111 WIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINS 170
                L +LS L  LDL+ +Y       +  L     +E L  ++ ++ +     +  + 
Sbjct: 73  --TLDLESLSTLRTLDLNNNY-------VQELLVGPSIETLHAANNNISR-----VSCSR 118

Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
               K + L + K+     L     S +  LDL  N     +          L  L+L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGL 290
           N     +         L+ LDLS N+  + +   F +   + ++SL  N+L   I    L
Sbjct: 179 NFIYD-VKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEK-AL 233

Query: 291 ENLTFIKTLDLSFNELGQDISEIL 314
                ++  DL  N          
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 1e-23
 Identities = 51/379 (13%), Positives = 114/379 (30%), Gaps = 97/379 (25%)

Query: 347 KNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGN 406
                  ++D+S+   L        ++  LDLS N L+  IS       T+L     + N
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSN 68

Query: 407 SVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWN 466
                +        + L                      L  LD++N  + +++      
Sbjct: 69  ----VLYE--TLDLESL--------------------STLRTLDLNNNYVQELLVG---- 98

Query: 467 SIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFE 526
                         P +  L+  NN  +    +S       +++ L +N+++ +  +   
Sbjct: 99  --------------PSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEG 141

Query: 527 NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVA 586
             S++  LD+  NE        +      L  LNL+ N ++ +        + L+ LD++
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLS 199

Query: 587 YNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILN 646
            N+L+  +     +                                              
Sbjct: 200 SNKLA-FMGPEFQSAA-------------------------------------------G 215

Query: 647 LVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSF-IGKIPETIGNMRSIESLDLSGNQ 705
           +   I +  N     I   +   + L+  +L  N F  G + +     + ++++     +
Sbjct: 216 V-TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 706 ISGKIPQSMSSLSFLNHLN 724
                 +   ++  L H  
Sbjct: 274 KLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (251), Expect = 2e-23
 Identities = 44/260 (16%), Positives = 99/260 (38%), Gaps = 37/260 (14%)

Query: 473 IPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLV 532
           I +   N    ++  + ++    ++     +  +++ L+L  N LS I        ++L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 533 ALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSG 592
            L++  N     +     E  S LR L+L +N +      ++    S++ L  A N +S 
Sbjct: 62  LLNLSSNVLYETLDL---ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 593 SVPKCINNFTAMATIG-SHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSI 651
            V    +       I  +++++  +                             + V+ +
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGC---------------------RSRVQYL 149

Query: 652 DISMNNFSG-EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI 710
           D+ +N            +   L+ LNL +N  I  +   +     +++LDLS N+++  +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-VFAKLKTLDLSSNKLA-FM 206

Query: 711 PQSMSSLSFLNHLNLSDNKL 730
                S + +  ++L +NKL
Sbjct: 207 GPEFQSAAGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.0 bits (224), Expect = 9e-20
 Identities = 39/248 (15%), Positives = 78/248 (31%), Gaps = 57/248 (22%)

Query: 496 SIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555
           +I          +   +  + L   +    ++   +  LD+  N     I       F++
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59

Query: 556 LRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKA 615
           L +LNL SN L+    ++   LS+L+ LD+  N +   +    +                
Sbjct: 60  LELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQ-ELLVGPS---------------- 100

Query: 616 IYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSL 675
                                           + ++  + NN S  +       +G +++
Sbjct: 101 --------------------------------IETLHAANNNIS-RVSCS--RGQGKKNI 125

Query: 676 NLSHNSFIGKIPETIGNMRSIESLDLSGNQISG-KIPQSMSSLSFLNHLNLSDNKLVGKI 734
            L++N          G    ++ LDL  N+I      +  +S   L HLNL  N +   +
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184

Query: 735 PSSTQLQS 742
                   
Sbjct: 185 KGQVVFAK 192

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  116 bits (292), Expect = 2e-28
 Identities = 73/378 (19%), Positives = 124/378 (32%), Gaps = 88/378 (23%)

Query: 197 SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQ 256
            L  +  S        +P  +    D   LDL +N         FKNL +L  L L  N+
Sbjct: 32  HLRVVQCSDLGL--EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 257 FNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDI 316
            +      F+    LE L L  N+L+  +     + L     L +  NE    I+++   
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQ---ELRVHENE----ITKVRK- 138

Query: 317 ISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSV-SGPLPPAS-GELSSLT 374
               + F                    GL   +  + L  N + S  +   +   +  L+
Sbjct: 139 ----SVFN-------------------GL-NQMIVVELGTNPLKSSGIENGAFQGMKKLS 174

Query: 375 YLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGP 434
           Y+ +++ N+   I +    +LTEL   + +GN    KI    V                 
Sbjct: 175 YIRIADTNIT-TIPQGLPPSLTEL---HLDGN----KITK--VD---------------- 208

Query: 435 HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT 494
              + L    +L+KL +S   IS +                   N P LR L+L NNK  
Sbjct: 209 --AASLKGLNNLAKLGLSFNSISAVDNGSLA-------------NTPHLRELHLNNNKLV 253

Query: 495 GSIPISMGTLTSLRSLNLRSNRLSGI------IPVPFENCSQLVALDMGENEF-VGNIPT 547
             +P  +     ++ + L +N +S I       P      +    + +  N      I  
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 548 WMGERFSRLRILNLRSNK 565
                      + L + K
Sbjct: 313 STFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (265), Expect = 5e-25
 Identities = 58/321 (18%), Positives = 113/321 (35%), Gaps = 34/321 (10%)

Query: 72  HLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY 131
           HL ++  S    +  ++P+ +    +   L+L              NL NL  L L  + 
Sbjct: 32  HLRVVQCSDLGLE--KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINN- 86

Query: 132 YELRVEDISWLAGPSL--LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAP 189
              ++  IS  A   L  LE L  S   L +     L      +L+ L++   ++     
Sbjct: 87  ---KISKISPGAFAPLVKLERLYLSKNQLKE-----LPEKMPKTLQELRVHENEITKVRK 138

Query: 190 LASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKNLTSLR 248
                 + +  ++L  N    + I +  F G+  L ++ ++       IP G     SL 
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLT 195

Query: 249 YLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQ 308
            L L  N+     +      ++L  L L +N +   + +  L N   ++ L L+ N+L  
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKL-V 253

Query: 309 DISEILDIISACAAFELESLFLRGCKISG------QLTNQLGLFKNLHTLALSDNSVS-G 361
            +   L          ++ ++L    IS                 +   ++L  N V   
Sbjct: 254 KVPGGLADHKY-----IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308

Query: 362 PLPPAS-GELSSLTYLDLSNN 381
            + P++   +     + L N 
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (257), Expect = 6e-24
 Identities = 60/342 (17%), Positives = 110/342 (32%), Gaps = 86/342 (25%)

Query: 71  KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGS 130
               LLDL  N    I+                              NL NL  L L  +
Sbjct: 52  PDTALLDLQNNKITEIK-------------------------DGDFKNLKNLHTLILINN 86

Query: 131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPL 190
                   IS ++  +                        L  L+ L L   +L      
Sbjct: 87  K-------ISKISPGAF---------------------APLVKLERLYLSKNQLKELPEK 118

Query: 191 ASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSN-IFRGPIPDG-FKNLTSL 247
                 +L  L +  N    T +   VF GL+ ++ ++L +N +    I +G F+ +  L
Sbjct: 119 M---PKTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 248 RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELG 307
            Y+ ++     +       +   L  L L  N++   + +  L+ L  +  L LSFN + 
Sbjct: 174 SYIRIADTNITTIPQGLPPS---LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSI- 228

Query: 308 QDISEILDIISACAAFE----LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSG-- 361
             +           +      L  L L   K+  ++   L   K +  + L +N++S   
Sbjct: 229 SAVDN--------GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279

Query: 362 ----PLPPASGELSSLTYLDLSNNNLN-GMISEIHFGNLTEL 398
                 P  + + +S + + L +N +    I    F  +   
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 49/304 (16%), Positives = 101/304 (33%), Gaps = 53/304 (17%)

Query: 437 PSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGS 496
                + K+L  L + N +IS I P  F                  L  L L  N+    
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPL-------------VKLERLYLSKNQLKE- 114

Query: 497 IPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF-VGNIPTWMGERFSR 555
             +      +L+ L +  N ++ +    F   +Q++ +++G N      I     +   +
Sbjct: 115 --LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172

Query: 556 LRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIG-SHHQVK 614
           L  + +    +  I         SL  L +  N+++      +     +A +G S + + 
Sbjct: 173 LSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 615 AIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQS 674
           A+ + S  N                        +R + ++ N    ++P  + + K +Q 
Sbjct: 230 AVDNGSLAN---------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQV 267

Query: 675 LNLSHNSFIGKIPET-------IGNMRSIESLDLSGNQIS-GKIPQSM-SSLSFLNHLNL 725
           + L +N+ I  I               S   + L  N +   +I  S    +     + L
Sbjct: 268 VYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326

Query: 726 SDNK 729
            + K
Sbjct: 327 GNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 47/264 (17%), Positives = 90/264 (34%), Gaps = 24/264 (9%)

Query: 51  ELNLERSELGGKINP-ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFA 109
            L L  +++  KI+P A   L  L  L LS N  + +           L+ L +      
Sbjct: 80  TLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQELRVHENEIT 134

Query: 110 GWIPHQLGNLSNLMHLDLSG-SYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVI 168
                    L+ ++ ++L         +E+     G   L ++  +D ++          
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITTIPQ----- 188

Query: 169 NSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLD 227
              PSL  L L   K+      +    ++L  L LS N    +++ +        L  L 
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI--SAVDNGSLANTPHLRELH 246

Query: 228 LSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCF------SNFDDLEYLSLGYNRL 281
           L++N     +P G  +   ++ + L  N  ++  S+ F      +       +SL  N +
Sbjct: 247 LNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 282 QGT-ISSIGLENLTFIKTLDLSFN 304
           Q   I       +     + L   
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 51/251 (20%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
           PD  +L+L NNK T         L +L +L L +N++S I P  F    +L  L + +N+
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
               +P  M      L+ L +  N++  +       L+ + ++++  N L  S       
Sbjct: 112 LK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS------- 160

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
                          I + +F+                      +  +  I I+  N + 
Sbjct: 161 --------------GIENGAFQG---------------------MKKLSYIRIADTNIT- 184

Query: 661 EIPMEVTNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQISGKIPQSMSSLSF 719
            IP  +     L  L+L  N  I K+   ++  + ++  L LS N IS     S+++   
Sbjct: 185 TIPQGL--PPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 720 LNHLNLSDNKL 730
           L  L+L++NKL
Sbjct: 242 LRELHLNNNKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 55/344 (15%), Positives = 104/344 (30%), Gaps = 70/344 (20%)

Query: 344 GLFKNLHTLALSDNSVSGPLPPAS-GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFY 402
            L  +   L L +N ++  +       L +L  L L NN ++  IS   F  L +L   Y
Sbjct: 49  DLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY 106

Query: 403 ANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPR 462
            + N                   +L+   L    P      K L +L +    I+ +   
Sbjct: 107 LSKN-------------------QLKE--LPEKMP------KTLQELRVHENEITKVRKS 139

Query: 463 WFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT---LTSLRSLNLRSNRLSG 519
            F                  + V+ LG N    S  I  G    +  L  + +    ++ 
Sbjct: 140 VFNGL-------------NQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTNITT 185

Query: 520 IIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSS 579
           I   P      L  L +  N+    +     +  + L  L L  N +  +    + +   
Sbjct: 186 I---PQGLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 580 LQILDVAYNRLSGSVPKCINNFTAMATIG-SHHQVKAIYHASFENDYIVEEISLVMKGFM 638
           L+ L +  N+L   VP  + +   +  +   ++ + AI    F       +         
Sbjct: 242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK--------- 291

Query: 639 VEYNSILNLVRSIDISMNNFS-GEIPMEV-TNLKGLQSLNLSHN 680
                       + +  N     EI       +    ++ L + 
Sbjct: 292 ------KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 7e-18
 Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 22/222 (9%)

Query: 70  LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSG-AGFAGWIPHQ-LGNLSNLMHLDL 127
            K L  L +  N+   ++       ++ +  + L      +  I +     +  L ++ +
Sbjct: 120 PKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 128 SGSYYELRVEDISWLAGPSLLE-HLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH 186
           + +     +  I     PSL E HLD + +  + A+     +  L +L  L L    +  
Sbjct: 179 ADT----NITTIPQGLPPSLTELHLDGNKITKVDAAS----LKGLNNLAKLGLSFNSISA 230

Query: 187 FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRG------PIPDG 240
               + AN   L  L L+ N      +P  +     +  + L +N            P  
Sbjct: 231 VDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 241 FKNLTSLRYLDLSYNQFNSTI--SDCFSNFDDLEYLSLGYNR 280
                S   + L  N           F        + LG  +
Sbjct: 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 52/189 (27%)

Query: 553 FSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQ 612
                +L+L++NK+  I      +L +L  L +  N++S                     
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS--------------------- 89

Query: 613 VKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGL 672
              I   +F                       L  +  + +S N    E+P ++   K L
Sbjct: 90  --KISPGAFAP---------------------LVKLERLYLSKNQLK-ELPEKM--PKTL 123

Query: 673 QSLNLSHNSFIGKIPETI-GNMRSIESLDLSGNQI-SGKIPQSM-SSLSFLNHLNLSDNK 729
           Q L +  N  I K+ +++   +  +  ++L  N + S  I       +  L+++ ++D  
Sbjct: 124 QELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 730 LVGKIPSST 738
           +   IP   
Sbjct: 183 IT-TIPQGL 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQIS 707
           R +  S      ++P ++        L+L +N  I +I +    N++++ +L L  N+IS
Sbjct: 34  RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 708 GKIPQSMSSLSFLNHLNLSDNKLVGKIPSST 738
              P + + L  L  L LS N+L  ++P   
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPEKM 119

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  117 bits (295), Expect = 1e-27
 Identities = 102/544 (18%), Positives = 180/544 (33%), Gaps = 98/544 (18%)

Query: 196 SSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYN 255
              + +D S      T +P  +        L LS N            L+ LR L LS+N
Sbjct: 31  ELESMVDYSNRNL--THVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN 86

Query: 256 QFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILD 315
           +  S     F    DLEYL + +NRLQ  IS   + +L     LDLSFN+         D
Sbjct: 87  RIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMASLRH---LDLSFNDF--------D 134

Query: 316 IISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTY 375
           ++  C  F                                            G L+ LT+
Sbjct: 135 VLPVCKEF--------------------------------------------GNLTKLTF 150

Query: 376 LDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPH 435
           L LS         ++    +  L       + V++ I        Q+    +   HL  H
Sbjct: 151 LGLSAAKF----RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL--HLVFH 204

Query: 436 FPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTG 495
             S    Q ++S   + + ++S+I      N     T        P L  + L + + T 
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLND-ENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 496 SIPISMGTL---TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGN----IPTW 548
              + +        +  LN+ +  ++  I       S+     +                
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 549 MGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIG 608
           +   F+ + I  L  +    I  +     SS   L+   N  + SV +  +    + T+ 
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 609 SHH-QVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNF-SGEIPMEV 666
                +K  +  +                        ++ + ++D+S+N+  S       
Sbjct: 384 LQRNGLKNFFKVALMTKN-------------------MSSLETLDVSLNSLNSHAYDRTC 424

Query: 667 TNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLS 726
              + +  LNLS N   G +   +     ++ LDL  N+I   IP+ ++ L  L  LN++
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481

Query: 727 DNKL 730
            N+L
Sbjct: 482 SNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (254), Expect = 1e-22
 Identities = 88/484 (18%), Positives = 163/484 (33%), Gaps = 49/484 (10%)

Query: 76  LDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELR 135
           L LS N    ++    I  +  LR L LS         H      +L +LD+S +    R
Sbjct: 57  LSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN----R 111

Query: 136 VEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANF 195
           +++IS     SL  HLD S  D            +L  L  L L + K      L  A+ 
Sbjct: 112 LQNISCCPMASL-RHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 196 S-SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN-IFRGPIPDGFKNLTSLRYLDLS 253
             S   LDL           S     + ++ L    N +F   +      L  L+  ++ 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 254 YNQFNSTISDCFSN---------FDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
            N  N      F +            L+++   +              + ++   +L+  
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 305 ELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFK---NLHTLALSDNSVSG 361
           E            +      L+SL +   K    L ++  L+     ++   LS +    
Sbjct: 290 ERIDREEFTYSETA------LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 362 PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQ 421
                    SS T+L+ + N     + +     L  L       N +        +    
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLK-NFFKVALMTKN 401

Query: 422 LLALRLRSCHLGPH----FPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW 477
           + +L      L       +       + +  L++S+  ++  +            +P   
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---------RCLP--- 449

Query: 478 MNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMG 537
              P ++VL+L NN+   SIP  +  L +L+ LN+ SN+L  +    F+  + L  + + 
Sbjct: 450 ---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505

Query: 538 ENEF 541
           +N +
Sbjct: 506 DNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.5 bits (222), Expect = 9e-19
 Identities = 78/459 (16%), Positives = 145/459 (31%), Gaps = 84/459 (18%)

Query: 70  LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLS- 128
           +  L  LDLS NDF  + + +  G++  L +L LS A F   +        +L  + L  
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDL 178

Query: 129 GSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKL--------- 179
            SY+    E  S     + + HL      L  +    + +N+L  L++  +         
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLF-SVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 180 FSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD--LSSNIFRGPI 237
               L       +    +L  ++ +     K     W   +  L   +  ++  I R   
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 238 PDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIK 297
                 L SL    +    F  +    +S F ++    L  +     I  +   + +   
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFT 356

Query: 298 TLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDN 357
            L+ + N     + +                          L         L TL L  N
Sbjct: 357 FLNFTQNVFTDSVFQGCS----------------------TLK-------RLQTLILQRN 387

Query: 358 SVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWV 417
            +       +    +++ L+  + +LN  ++   +                         
Sbjct: 388 GLKN-FFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAW------------------- 426

Query: 418 PPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW 477
               +L L L S  L       L  +  +  LD+ N RI               +IP   
Sbjct: 427 -AESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM--------------SIPKDV 469

Query: 478 MNWPDLRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSN 515
            +   L+ LN+ +N+   S+P  +   LTSL+ + L  N
Sbjct: 470 THLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 57/209 (27%), Positives = 80/209 (38%), Gaps = 19/209 (9%)

Query: 70  LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG 129
              +N+  LS +D   I +     S  +  +LN +   F   +      L  L  L L  
Sbjct: 328 FAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 130 SYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH--F 187
           +  +   +        S LE LD S   L   +          S+ VL L S  L    F
Sbjct: 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-AWAESILVLNLSSNMLTGSVF 445

Query: 188 APLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDG-FKNLTS 246
             L       +  LDL  N     SIP  V  L  L  L+++SN  +  +PDG F  LTS
Sbjct: 446 RCLPP----KVKVLDLHNNRI--MSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTS 498

Query: 247 LRYLDLSYNQFNSTISDCFSNFDDLEYLS 275
           L+Y+ L  N +     DC      + YLS
Sbjct: 499 LQYIWLHDNPW-----DC--TCPGIRYLS 520

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (280), Expect = 1e-25
 Identities = 64/395 (16%), Positives = 124/395 (31%), Gaps = 71/395 (17%)

Query: 190 LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRY 249
           + +   +    L++  +    T++P  +   + +  L +  N     +P        LR 
Sbjct: 34  MRACLNNGNAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRT 85

Query: 250 LDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQD 309
           L++S NQ  +++        +L   S     L    S +          L +  N+L   
Sbjct: 86  LEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLPALPSGL--------CKLWIFGNQL-TS 135

Query: 310 ISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGE 369
           +  +           L+ L +       QL +   L   L  L   +N ++  LP     
Sbjct: 136 LPVLPP--------GLQELSVSDN----QLASLPALPSELCKLWAYNNQLTS-LPM---L 179

Query: 370 LSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRS 429
            S L  L +S+N L  + +      L +L  +     S+    +        L  L +  
Sbjct: 180 PSGLQELSVSDNQLASLPTLP--SELYKLWAYNNRLTSLPALPSG-------LKELIVSG 230

Query: 430 CHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLG 489
             L    P        L +L +S  R++ + P                     L  L++ 
Sbjct: 231 NRLT-SLPVLP---SELKELMVSGNRLTSL-PMLPSG----------------LLSLSVY 269

Query: 490 NNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWM 549
            N+ T  +P S+  L+S  ++NL  N LS       +   ++ +           I   M
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLS---ERTLQALREITSA---PGYSGPIIRFDM 322

Query: 550 GERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584
               +      L       + P +    +      
Sbjct: 323 AGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (261), Expect = 2e-23
 Identities = 77/437 (17%), Positives = 152/437 (34%), Gaps = 127/437 (29%)

Query: 305 ELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLP 364
           E  +  + ++  + AC       L +    ++  L +   L  ++ TL + DN+++  LP
Sbjct: 22  EESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLPAHITTLVIPDNNLTS-LP 77

Query: 365 PASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLA 424
                   L  L++S N L  +        L EL+ F      +                
Sbjct: 78  A---LPPELRTLEVSGNQLTSLPVLP--PGLLELSIFSNPLTHL---------------- 116

Query: 425 LRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLR 484
                    P  PS       L KL I   +++ + P                   P L+
Sbjct: 117 ---------PALPS------GLCKLWIFGNQLTSL-PVLP----------------PGLQ 144

Query: 485 VLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGN 544
            L++ +N+   S+P      + L  L   +N+L+ +   P    S L  L + +N+   +
Sbjct: 145 ELSVSDNQLA-SLP---ALPSELCKLWAYNNQLTSL---P-MLPSGLQELSVSDNQLA-S 195

Query: 545 IPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAM 604
           +PT        L  L   +N+L  + P      S L+ L V+ NRL+ S+P   +     
Sbjct: 196 LPTLPS----ELYKLWAYNNRLTSL-PALP---SGLKELIVSGNRLT-SLPVLPSELK-- 244

Query: 605 ATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPM 664
                                                         + +S N  +  +PM
Sbjct: 245 ---------------------------------------------ELMVSGNRLT-SLPM 258

Query: 665 EVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLN 724
             + L    SL++  N  + ++PE++ ++ S  +++L GN +S +  Q++  ++     +
Sbjct: 259 LPSGL---LSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

Query: 725 LSDNKLVGKIPSSTQLQ 741
               +      S+ +  
Sbjct: 315 GPIIRFDMAGASAPRET 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (251), Expect = 3e-22
 Identities = 70/372 (18%), Positives = 120/372 (32%), Gaps = 113/372 (30%)

Query: 220 LSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
            +    L++  +     +PD       +  L +  N   S +         L  L +  N
Sbjct: 39  NNGNAVLNVGESGLTT-LPDCL--PAHITTLVIPDNNLTS-LPALPPE---LRTLEVSGN 91

Query: 280 RLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQL 339
           +L  T   +    L  +         L    S             L  L++ G +++  L
Sbjct: 92  QL--TSLPVLPPGLLELSIFSNPLTHLPALPSG------------LCKLWIFGNQLT-SL 136

Query: 340 TNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
                    L  L++SDN ++  LP      S L  L   NN             LT L 
Sbjct: 137 PVLPP---GLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQ------------LTSL- 176

Query: 400 FFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
                                             P  PS       L +L +S+ +++  
Sbjct: 177 ----------------------------------PMLPS------GLQELSVSDNQLA-- 194

Query: 460 IPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG 519
                       ++P       +L  L   NN+ T S+P      + L+ L +  NRL+ 
Sbjct: 195 ------------SLPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS 235

Query: 520 IIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSS 579
           +  +P    S+L  L +  N    ++P         L  L++  N+L  + P  + HLSS
Sbjct: 236 LPVLP----SELKELMVSGNRLT-SLPMLPS----GLLSLSVYRNQLTRL-PESLIHLSS 285

Query: 580 LQILDVAYNRLS 591
              +++  N LS
Sbjct: 286 ETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =   99 bits (249), Expect = 7e-22
 Identities = 65/335 (19%), Positives = 99/335 (29%), Gaps = 61/335 (18%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
            LN+  S L   +   L    H+  L +  N+     +P        LR L +SG     
Sbjct: 44  VLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT--SLPALPP---ELRTLEVSGNQLTS 95

Query: 111 WIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINS 170
            +P     L  L                +  L  PS L  L      L            
Sbjct: 96  -LPVLPPGLLELSIFSNPL-------THLPAL--PSGLCKLWIFGNQLTSLP------VL 139

Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
            P L+ L +   +L     L     S L  L    N    TS+P      S L  L +S 
Sbjct: 140 PPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQL--TSLPM---LPSGLQELSVSD 190

Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGL 290
           N     +P     L  L   +       +  S        L+ L +  NRL         
Sbjct: 191 NQLAS-LPTLPSELYKLWAYNNRLTSLPALPS-------GLKELIVSGNRLTSLPVLPS- 241

Query: 291 ENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLH 350
             L     L +S N L   +  +           L SL +   +++ +L   L    +  
Sbjct: 242 -ELK---ELMVSGNRL-TSLPMLPS--------GLLSLSVYRNQLT-RLPESLIHLSSET 287

Query: 351 TLALSDNSVSGPLPPASGELS-SLTYLDLSNNNLN 384
           T+ L  N    PL   + +    +T     +  + 
Sbjct: 288 TVNLEGN----PLSERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.5 bits (214), Expect = 1e-17
 Identities = 45/277 (16%), Positives = 93/277 (33%), Gaps = 44/277 (15%)

Query: 477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDM 536
           W  W           +      +          LN+  + L+ +   P    + +  L +
Sbjct: 12  WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTL---PDCLPAHITTLVI 68

Query: 537 GENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK 596
            +N    ++P         LR L +  N+L  + P+    L  L I       L  ++P 
Sbjct: 69  PDNNLT-SLP----ALPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLP-ALPS 121

Query: 597 CINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNL------VRS 650
            +            +Q+ ++          ++E+S+         N + +L      +  
Sbjct: 122 GLCKLWI-----FGNQLTSL-PVLPPG---LQELSV-------SDNQLASLPALPSELCK 165

Query: 651 IDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI 710
           +    N  +  +PM  + L   Q L++S N  +  +P     +     L    N+++  +
Sbjct: 166 LWAYNNQLT-SLPMLPSGL---QELSVSDNQ-LASLPTLPSELY---KLWAYNNRLT-SL 216

Query: 711 PQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASS 747
           P   S L     L +S N+L       ++L+    S 
Sbjct: 217 PALPSGLK---ELIVSGNRLTSLPVLPSELKELMVSG 250

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 45/277 (16%), Positives = 75/277 (27%), Gaps = 31/277 (11%)

Query: 70  LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG 129
              L  L    N      +P        L+ L++S    A  +P     L  L   +   
Sbjct: 160 PSELCKLWAYNNQLT--SLPMLPS---GLQELSVSDNQLAS-LPTLPSELYKLWAYNNR- 212

Query: 130 SYYELRVEDISWL-AGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFA 188
                    ++ L A PS L+ L  S   L               LK L +   +L    
Sbjct: 213 ---------LTSLPALPSGLKELIVSGNRLTSLPV------LPSELKELMVSGNRLTSL- 256

Query: 189 PLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR 248
                  S L +L +  N    T +P  +  LS    ++L  N          + +TS  
Sbjct: 257 ---PMLPSGLLSLSVYRNQL--TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP 311

Query: 249 YLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLS--FNEL 306
                  +F+   +        L   +  +            +        D +  F+  
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLF 371

Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQL 343
              +SE  + I         S +L        L    
Sbjct: 372 LDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANT 408

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 664 MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHL 723
           M      G   LN+  +  +  +P+ +     I +L +  N ++  +P   +    L  L
Sbjct: 34  MRACLNNGNAVLNVGESG-LTTLPDCLPA--HITTLVIPDNNLT-SLP---ALPPELRTL 86

Query: 724 NLSDNKLVGKIPSS-TQLQSFGASSITGNDL 753
            +S N+L   +P     L      S     L
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHL 116

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  108 bits (271), Expect = 4e-25
 Identities = 82/497 (16%), Positives = 146/497 (29%), Gaps = 95/497 (19%)

Query: 96  DNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSD 155
           DN      +              L+ L  LD   S     + D++ +   + L  L  + 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNS----SITDMTGIEKLTGLTKLICTS 73

Query: 156 VDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPS 215
            ++       L ++   +L  L   S KL +   L     + L  L+   N    T +  
Sbjct: 74  NNITT-----LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKL--TKLD- 122

Query: 216 WVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLS 275
            V     L +L+ + N     I     + T L  LD   N+  + +    +    L  L 
Sbjct: 123 -VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLD 176

Query: 276 LGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKI 335
             +N+    I+ + +     +  L+   N         +  +      +L  L     K+
Sbjct: 177 CSFNK----ITELDVSQNKLLNRLNCDTNN--------ITKLDLNQNIQLTFLDCSSNKL 224

Query: 336 SGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNL 395
           +      +     L     S N ++  L      LS LT L     +L     EI   + 
Sbjct: 225 T---EIDVTPLTQLTYFDCSVNPLT-ELDV--STLSKLTTLHCIQTDL----LEIDLTHN 274

Query: 396 TELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTR 455
           T+L +F A G     +++                          +     L  LD     
Sbjct: 275 TQLIYFQAEGCRKIKELD--------------------------VTHNTQLYLLDCQAAG 308

Query: 456 ISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSN 515
           I+++                     P L  L L N + T  + +S    T L+SL+  + 
Sbjct: 309 ITELDLS----------------QNPKLVYLYLNNTELT-ELDVSH--NTKLKSLSCVNA 349

Query: 516 RLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQIC 575
            +             L      E        T   E  +   +    S  L   F   + 
Sbjct: 350 HIQDFS--SVGKIPALNNNFEAEG----QTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

Query: 576 HL-SSLQILDVAYNRLS 591
                  + D A N ++
Sbjct: 404 IEPGDGGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.8 bits (249), Expect = 3e-22
 Identities = 71/450 (15%), Positives = 124/450 (27%), Gaps = 93/450 (20%)

Query: 69  DLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLS 128
            L  L  LD   +    +     I  +  L  L  +       +   L   +NL +L   
Sbjct: 40  QLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACD 93

Query: 129 GSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFA 188
            +    ++ ++  +   + L +L+     L K     L ++  P L  L      L    
Sbjct: 94  SN----KLTNLD-VTPLTKLTYLNCDTNKLTK-----LDVSQNPLLTYLNCARNTLTE-- 141

Query: 189 PLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR 248
            +  ++ + L  LD   N   K      V   + L  LD S N     +         L 
Sbjct: 142 -IDVSHNTQLTELDCHLN---KKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLN 194

Query: 249 YLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQ 308
            L+   N   + +    +    L +L    N+    ++ I +  LT +   D S N L +
Sbjct: 195 RLNCDTNNI-TKLD--LNQNIQLTFLDCSSNK----LTEIDVTPLTQLTYFDCSVNPLTE 247

Query: 309 DISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASG 368
                   +      +L +L      +       L     L             L     
Sbjct: 248 --------LDVSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRKIKELD--VT 294

Query: 369 ELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLR 428
             + L  LD         I+E+      +L + Y N                +L  L + 
Sbjct: 295 HNTQLYLLDCQAAG----ITELDLSQNPKLVYLYLNNT--------------ELTELDVS 336

Query: 429 SCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNL 488
                            L  L   N  I D                      P L     
Sbjct: 337 HN-------------TKLKSLSCVNAHIQDF---------------SSVGKIPALNNNFE 368

Query: 489 GNNKFTGSIPISMGTLTSLRSLNLRSNRLS 518
              +   ++P    T  SL ++ +  + L 
Sbjct: 369 AEGQTI-TMPKETLTNNSL-TIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.8 bits (244), Expect = 1e-21
 Identities = 72/524 (13%), Positives = 155/524 (29%), Gaps = 136/524 (25%)

Query: 241 FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLD 300
            + L +L  LD   +               L  L    N     I+++ L   T +  L 
Sbjct: 38  EEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN----ITTLDLSQNTNLTYLA 91

Query: 301 LSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS 360
              N+L          +      +L  L     K++      +     L  L  + N+++
Sbjct: 92  CDSNKLTN--------LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT 140

Query: 361 GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPF 420
             +       + LT LD   N     I+++     T+L     + N              
Sbjct: 141 -EIDV--SHNTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFN-------------- 180

Query: 421 QLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNW 480
           ++  L +                K L++L+     I+ +                     
Sbjct: 181 KITELDVSQN-------------KLLNRLNCDTNNITKLDLN----------------QN 211

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
             L  L+  +NK T  I ++   LT L   +   N L+ +        S+L  L   + +
Sbjct: 212 IQLTFLDCSSNKLT-EIDVT--PLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTD 265

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
            +  I        ++L        +   I  + + H + L +LD     ++         
Sbjct: 266 LL-EIDL---THNTQLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAGIT--------- 310

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
                                       E+ L          S    +  + ++    + 
Sbjct: 311 ----------------------------ELDL----------SQNPKLVYLYLNNTELT- 331

Query: 661 EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSF- 719
           E+   V++   L+SL+  +   I      +G + ++ +   +  Q      +++++ S  
Sbjct: 332 ELD--VSHNTKLKSLSCVNAH-IQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLT 387

Query: 720 ----LNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLS 759
                + L+   N +    P    +     ++IT  +L     +
Sbjct: 388 IAVSPDLLDQFGNPM-NIEPGDGGVYDQATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.5 bits (225), Expect = 3e-19
 Identities = 67/433 (15%), Positives = 142/433 (32%), Gaps = 55/433 (12%)

Query: 337 GQLTNQLGLFK--NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGN 394
           GQ  +    F   N  +   +   +      +  +L++LT LD  N+++  M        
Sbjct: 6   GQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTG 65

Query: 395 LTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNT 454
           LT+L     N  +++   N+       L  L   S  L  +    +     L+ L+    
Sbjct: 66  LTKLICTSNNITTLDLSQNTN------LTYLACDSNKL-TNLD--VTPLTKLTYLNCDTN 116

Query: 455 RISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRS 514
           +++ +                     P L  LN   N  T  I +S    T L  L+   
Sbjct: 117 KLTKLDVSQN----------------PLLTYLNCARNTLT-EIDVS--HNTQLTELDCHL 157

Query: 515 NRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQI 574
           N+   I  +     +QL  LD   N     I      +   L  LN  +N +     + +
Sbjct: 158 NKK--ITKLDVTPQTQLTTLDCSFN----KITELDVSQNKLLNRLNCDTNNITK---LDL 208

Query: 575 CHLSSLQILDVAYNRLSGSVPKCINNFTAMATIG-SHHQVKAIYHASFENDYIVEEISLV 633
                L  LD + N+L+  +   +   T +     S + +  +  ++          +L 
Sbjct: 209 NQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKL-----TTLH 260

Query: 634 MKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNM 693
                +    + +  + I            ++VT+   L  L+      I ++   +   
Sbjct: 261 CIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG-ITELD--LSQN 317

Query: 694 RSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDL 753
             +  L L+  +++ ++   +S  + L  L+  +  +     S  ++ +   +       
Sbjct: 318 PKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQT 373

Query: 754 CGAPLSNCTEKNV 766
              P    T  ++
Sbjct: 374 ITMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 63/340 (18%), Positives = 98/340 (28%), Gaps = 49/340 (14%)

Query: 67  LVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLD 126
           L    +L  L    N    + +      +  L YLN             +     L +L+
Sbjct: 81  LSQNTNLTYLACDSNKLTNLDV----TPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLN 133

Query: 127 LSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH 186
            + +   L   D+S     + L  LD      I      L +     L  L     K+  
Sbjct: 134 CARN--TLTEIDVSHN---TQLTELDCHLNKKIT----KLDVTPQTQLTTLDCSFNKITE 184

Query: 187 FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTS 246
              L  +    LN L+   N    T +   +     L FLD SSN     I      LT 
Sbjct: 185 ---LDVSQNKLLNRLNCDTNNI--TKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQ 234

Query: 247 LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
           L Y D S N          S    L  L      L      I L + T +          
Sbjct: 235 LTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDL----LEIDLTHNTQLIYFQAEGC-- 285

Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA 366
                  +  +      +L  L  +   I+      L     L  L L++  ++  L  +
Sbjct: 286 -----RKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTE-LDVS 336

Query: 367 SGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGN 406
               + L  L   N ++    S +  G +  L   +    
Sbjct: 337 H--NTKLKSLSCVNAHIQD-FSSV--GKIPALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.0 bits (208), Expect = 4e-17
 Identities = 54/333 (16%), Positives = 100/333 (30%), Gaps = 45/333 (13%)

Query: 67  LVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLD 126
           +  L  L  L+   N    + +         L YLN +           + + + L  LD
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLDV----SQNPLLTYLNCARNTLTEI---DVSHNTQLTELD 154

Query: 127 LSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH 186
                   +      +   + L  LD S   + +     L ++    L  L   +  +  
Sbjct: 155 CHL----NKKITKLDVTPQTQLTTLDCSFNKITE-----LDVSQNKLLNRLNCDTNNITK 205

Query: 187 FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTS 246
              L       L  LD S N    T I   V  L+ L + D S N     +      L+ 
Sbjct: 206 ---LDLNQNIQLTFLDCSSNKL--TEID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSK 255

Query: 247 LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
           L  L               ++   L Y      R    I  + + + T +  LD     +
Sbjct: 256 LTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRK---IKELDVTHNTQLYLLDCQAAGI 309

Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA 366
             ++      +S      L  L+L   +++      +     L +L+  +  +      +
Sbjct: 310 -TELD-----LSQNPK--LVYLYLNNTELT---ELDVSHNTKLKSLSCVNAHIQDF--SS 356

Query: 367 SGELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
            G++ +L     +      M  E    N   +A
Sbjct: 357 VGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 40/249 (16%), Positives = 74/249 (29%), Gaps = 27/249 (10%)

Query: 67  LVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLD 126
           L     L  LD S N    I +      +  L Y + S       +   +  LS L  L 
Sbjct: 208 LNQNIQLTFLDCSSNKLTEIDV----TPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLH 260

Query: 127 LSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH 186
              +  +L   D++     + L +        IK  D    +     L +L   +  +  
Sbjct: 261 CIQT--DLLEIDLTHN---TQLIYFQAEGCRKIKELD----VTHNTQLYLLDCQAAGITE 311

Query: 187 FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTS 246
              L  +    L  L L+      T +   V   + L  L   +   +         + +
Sbjct: 312 ---LDLSQNPKLVYLYLNNTEL--TELD--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPA 362

Query: 247 LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI--GLENLTFIKTLDLSFN 304
           L     +  Q  +   +  +N      +S       G   +I  G   +    T  +++ 
Sbjct: 363 LNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWE 422

Query: 305 ELGQDISEI 313
            L  D   +
Sbjct: 423 NLSTDNPAV 431

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  104 bits (262), Expect = 8e-25
 Identities = 53/239 (22%), Positives = 86/239 (35%), Gaps = 12/239 (5%)

Query: 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSS 230
            S   L+L S KL           + L  L LS N        S    G + L +LDLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDC-FSNFDDLEYLSLGYNRLQGTISSIG 289
           N     +   F  L  L +LD  ++          F +  +L YL + +   +    +  
Sbjct: 88  NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145

Query: 290 LENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNL 349
              L+ ++ L ++ N   ++     DI +      L  L L  C++            +L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLP--DIFTELR--NLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 350 HTLALSDNSVSGPLPPAS-GELSSLTYLDLSNNNLNGMISEIHFGNL-TELAFFYANGN 406
             L +S N+    L       L+SL  LD S N++     +    +  + LAF     N
Sbjct: 202 QVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.7 bits (249), Expect = 4e-23
 Identities = 62/301 (20%), Positives = 93/301 (30%), Gaps = 57/301 (18%)

Query: 225 FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ-G 283
            +  +S      +P G    +S   L+L  N+  S     F     L  LSL  N L   
Sbjct: 11  EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 284 TISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQL 343
              S      T +K LDLSFN +   +S     +       LE L  +   +     ++ 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQ-----LEHLDFQHSNLKQ--MSEF 119

Query: 344 GLFK---NLHTLALSDNSVSGPLPPAS-GELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
            +F    NL  L +S               LSSL  L ++ N+         F  L  L 
Sbjct: 120 SVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 400 FFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
           F                        L L  C L    P+  +S   L  L++S+     +
Sbjct: 179 F------------------------LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 460 IPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM--GTLTSLRSLNLRSNRL 517
               +                  L+VL+   N    +          +SL  LNL  N  
Sbjct: 215 DTFPYKCL-------------NSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

Query: 518 S 518
           +
Sbjct: 261 A 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.8 bits (239), Expect = 7e-22
 Identities = 55/242 (22%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 66  ALVDLKHLNLLDLSGNDFQGIQIPEYIGS-MDNLRYLNLSGAGFAGWIPHQLGNLSNLMH 124
               L  L  L LS N                +L+YL+LS  G    +      L  L H
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 105

Query: 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL 184
           LD   S       ++  ++  S+                       L +L  L +     
Sbjct: 106 LDFQHS-------NLKQMSEFSVFLS--------------------LRNLIYLDISHTHT 138

Query: 185 HHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKN 243
                      SSL  L ++GN F + +    +F  L +L FLDLS        P  F +
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 244 LTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL-TFIKTLDLS 302
           L+SL+ L++S+N F S  +  +   + L+ L    N +  T     L++  + +  L+L+
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLT 256

Query: 303 FN 304
            N
Sbjct: 257 QN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 45/226 (19%), Positives = 75/226 (33%), Gaps = 38/226 (16%)

Query: 367 SGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALR 426
           +G  SS T L+L +N L   +    F  LT+L     + N     ++ K           
Sbjct: 24  TGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSN----GLSFKGCCSQSDFGTT 78

Query: 427 LRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVL 486
                              L  LD+S   +               T+   ++    L  L
Sbjct: 79  ------------------SLKYLDLSFNGVI--------------TMSSNFLGLEQLEHL 106

Query: 487 NLGNNKFTGSIPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNI 545
           +  ++        S+  +L +L  L++            F   S L  L M  N F  N 
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166

Query: 546 PTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS 591
              +      L  L+L   +L  + P     LSSLQ+L++++N   
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 52/292 (17%), Positives = 89/292 (30%), Gaps = 66/292 (22%)

Query: 445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT- 503
             ++L++ + ++  +    F                  L  L+L +N  +        + 
Sbjct: 29  SATRLELESNKLQSLPHGVF-------------DKLTQLTKLSLSSNGLS-FKGCCSQSD 74

Query: 504 --LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNL 561
              TSL+ L+L  N +   +   F    QL  LD   +         +      L  L++
Sbjct: 75  FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133

Query: 562 RSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASF 621
                   F      LSSL++L +A N    +                           F
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL----------------------PDIF 171

Query: 622 ENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHN 680
                                  L  +  +D+S      ++      +L  LQ LN+SHN
Sbjct: 172 TE---------------------LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN 209

Query: 681 SFIGKIPETIGNMRSIESLDLSGNQISGKIPQSM--SSLSFLNHLNLSDNKL 730
           +F          + S++ LD S N I     +       S L  LNL+ N  
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 45/255 (17%), Positives = 86/255 (33%), Gaps = 52/255 (20%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLS--GIIPVPFENCSQLVALDMGE 538
                L L +NK           LT L  L+L SN LS  G         + L  LD+  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 539 NEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQI-CHLSSLQILDVAYNRLSGSVPKC 597
           N  +     ++G    +L  L+ + + L  +    +   L +L  LD+++          
Sbjct: 88  NGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR------ 139

Query: 598 INNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNN 657
                              ++  F                       L+ +  + ++ N+
Sbjct: 140 -----------------VAFNGIFNG---------------------LSSLEVLKMAGNS 161

Query: 658 FSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQISGKIPQSMS 715
           F      ++ T L+ L  L+LS    + ++      ++ S++ L++S N           
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 716 SLSFLNHLNLSDNKL 730
            L+ L  L+ S N +
Sbjct: 221 CLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 46/253 (18%), Positives = 84/253 (33%), Gaps = 46/253 (18%)

Query: 344 GLFKNLHTLALSDNSVSGPLPPAS-GELSSLTYLDLSNNNLNGM-ISEIHFGNLTELAFF 401
           G+  +   L L  N +   LP     +L+ LT L LS+N L+            T L + 
Sbjct: 25  GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 402 YANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIP 461
             + N               ++ +            S     + L  LD  ++ +  +  
Sbjct: 84  DLSFN--------------GVITM-----------SSNFLGLEQLEHLDFQHSNLKQMSE 118

Query: 462 R-WFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSNR-LS 518
              F +               +L  L++ +          +   L+SL  L +  N    
Sbjct: 119 FSVFLSL-------------RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQE 164

Query: 519 GIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLS 578
             +P  F     L  LD+ + +    +        S L++LN+  N    +       L+
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 579 SLQILDVAYNRLS 591
           SLQ+LD + N + 
Sbjct: 224 SLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 32/210 (15%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
            L+L  + +   ++   + L+ L  LD   ++ + +       S+ NL YL++S      
Sbjct: 82  YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 111 WIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINS 170
                   LS+L  L ++G+               S  E+                +   
Sbjct: 141 AFNGIFNGLSSLEVLKMAGN---------------SFQENFLPD------------IFTE 173

Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLS 229
           L +L  L L  C+L   +P A  + SSL  L++S N F   S+ ++ +  L+ L  LD S
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYS 231

Query: 230 SNIFRGPIPDGFKNL-TSLRYLDLSYNQFN 258
            N          ++  +SL +L+L+ N F 
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 46/188 (24%)

Query: 553 FSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQ 612
            S    L L SNKL  +       L+ L  L ++ N LS                     
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS--------------------- 65

Query: 613 VKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGL 672
            K     S                           ++ +D+S N     +      L+ L
Sbjct: 66  FKGCCSQSDFG---------------------TTSLKYLDLSFNGVI-TMSSNFLGLEQL 103

Query: 673 QSLNLSHNSFIGKIPE--TIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKL 730
           + L+  H++ + ++ E     ++R++  LD+S            + LS L  L ++ N  
Sbjct: 104 EHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 731 VGKIPSST 738
                   
Sbjct: 163 QENFLPDI 170

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (262), Expect = 7e-24
 Identities = 69/384 (17%), Positives = 105/384 (27%), Gaps = 105/384 (27%)

Query: 164 WLLVINSLPSLKVLKLFSCKLHHFAPLASAN--------FSSLNALDLSGNLFGKTSIPS 215
           W  ++     L       C     A  A            +  + +  +      + +P 
Sbjct: 14  WNAILLPFVYLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGL--SEVPQ 71

Query: 216 WVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLS 275
            +   S+  +L+L  N  +    D F++L  L  L L  N         F+    L  L 
Sbjct: 72  GIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 276 LGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKI 335
           L  N L   I S   E L+ ++ L L  N     I  I                      
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNP----IESI---------------------- 162

Query: 336 SGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNL 395
                     F                       + SL  LDL        ISE  F  L
Sbjct: 163 ------PSYAFNR---------------------VPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 396 TELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTR 455
             L +      ++        +P    L                      L +L++S   
Sbjct: 196 FNLKYLNLGMCNIKD------MPNLTPL--------------------VGLEELEMSGNH 229

Query: 456 ISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSN 515
             +I P  F                  L+ L + N++ +     +   L SL  LNL  N
Sbjct: 230 FPEIRPGSFH-------------GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

Query: 516 RLSGIIPVPFENCSQLVALDMGEN 539
            LS +    F     LV L +  N
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  101 bits (254), Expect = 7e-23
 Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 14/218 (6%)

Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDL 228
            L  L+VL+L    +      A    +SLN L+L  N    T IPS  F  LS L  L L
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL--TVIPSGAFEYLSKLRELWL 154

Query: 229 SSNIFRGPIPDG-FKNLTSLRYLDLS-YNQFNSTISDCFSNFDDLEYLSLGYNRLQGTIS 286
            +N     IP   F  + SL  LDL    +        F    +L+YL+LG   ++  + 
Sbjct: 155 RNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP 212

Query: 287 SIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF 346
           +  L  L  ++ L++S N   +        +S      L+ L++   ++S    N     
Sbjct: 213 N--LTPLVGLEELEMSGNHFPEIRPGSFHGLS-----SLKKLWVMNSQVSLIERNAFDGL 265

Query: 347 KNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384
            +L  L L+ N++S         L  L  L L +N  N
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.5 bits (243), Expect = 1e-21
 Identities = 54/234 (23%), Positives = 88/234 (37%), Gaps = 10/234 (4%)

Query: 72  HLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY 131
           +   L+L  N+ Q IQ  +    + +L  L L               L++L  L+L  + 
Sbjct: 76  NTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN- 133

Query: 132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC-KLHHFAPL 190
             L V         S L  L   +  +     +    N +PSL  L L    KL + +  
Sbjct: 134 -WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEG 190

Query: 191 ASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYL 250
           A     +L  L+L         +P+    L  L  L++S N F    P  F  L+SL+ L
Sbjct: 191 AFEGLFNLKYLNLGMCNI--KDMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 251 DLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
            +  +Q +    + F     L  L+L +N L  ++       L ++  L L  N
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.5 bits (230), Expect = 6e-20
 Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 50/252 (19%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
            + R LNL  N        +   L  L  L L  N +  I    F   + L  L++ +N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVA-YNRLSGSVPKCIN 599
            +  IP+   E  S+LR L LR+N +  I       + SL  LD+    +L         
Sbjct: 135 -LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-------- 185

Query: 600 NFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFS 659
                           I   +FE                      L  ++ +++ M N  
Sbjct: 186 ---------------YISEGAFEG---------------------LFNLKYLNLGMCNIK 209

Query: 660 GEIPMEVTNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQISGKIPQSMSSLS 718
            ++P  +T L GL+ L +S N    +I   +   + S++ L +  +Q+S     +   L+
Sbjct: 210 -DMP-NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266

Query: 719 FLNHLNLSDNKL 730
            L  LNL+ N L
Sbjct: 267 SLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 52/218 (23%), Positives = 77/218 (35%), Gaps = 9/218 (4%)

Query: 66  ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL 125
               L HL +L L  N  + I+       + +L  L L               LS L  L
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152

Query: 126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLH 185
            L  +   +             L  LD  ++  ++          L +LK L L  C + 
Sbjct: 153 WLRNN--PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIK 209

Query: 186 HFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKNL 244
               L       L  L++SGN F    I    F GLS L  L + ++       + F  L
Sbjct: 210 DMPNLT--PLVGLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ 282
            SL  L+L++N  +S   D F+    L  L L +N   
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.8 bits (197), Expect = 8e-16
 Identities = 57/269 (21%), Positives = 95/269 (35%), Gaps = 45/269 (16%)

Query: 419 PFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWM 478
           P     L L   ++            HL  L +    I  I    F              
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL----------- 122

Query: 479 NWPDLRVLNLGNNKFTGSIPISMGT---LTSLRSLNLRSNRLSGIIPVPFENCSQLVALD 535
               L  L L +N  T    I  G    L+ LR L LR+N +  I    F     L+ LD
Sbjct: 123 --ASLNTLELFDNWLTV---IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177

Query: 536 MGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP 595
           +GE + +  I     E    L+ LNL    +  +  +    L  L+ L+++ N      P
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT--PLVGLEELEMSGNHFPEIRP 235

Query: 596 KCINNFTAMATIG-SHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDIS 654
              +  +++  +   + QV  I   +F+                      L  +  ++++
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDG---------------------LASLVELNLA 274

Query: 655 MNNFSGEIPMEV-TNLKGLQSLNLSHNSF 682
            NN S  +P ++ T L+ L  L+L HN +
Sbjct: 275 HNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 38/193 (19%), Positives = 61/193 (31%), Gaps = 50/193 (25%)

Query: 553 FSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQ 612
            S  R LNL  N +  I      HL  L++L +  N +                      
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--------------------- 112

Query: 613 VKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKG 671
              I   +F                       L  + ++++  N  +  IP      L  
Sbjct: 113 --QIEVGAFNG---------------------LASLNTLELFDNWLT-VIPSGAFEYLSK 148

Query: 672 LQSLNLSHNSFIGKIPETI-GNMRSIESLDLSG-NQISGKIPQSMSSLSFLNHLNLSDNK 729
           L+ L L +N  I  IP      + S+  LDL    ++      +   L  L +LNL    
Sbjct: 149 LRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 730 LVGKIPSSTQLQS 742
           +   +P+ T L  
Sbjct: 208 IK-DMPNLTPLVG 219

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 65  PALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH 124
           P L  L  L  L++SGN F  I+ P     + +L+ L +  +  +    +    L++L+ 
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 125 LDLSG 129
           L+L+ 
Sbjct: 271 LNLAH 275

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  101 bits (253), Expect = 8e-24
 Identities = 55/223 (24%), Positives = 83/223 (37%), Gaps = 26/223 (11%)

Query: 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSS 230
            + + + L   ++ H    +     +L  L L  N+     I +  F GL+ L  LDLS 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSD 89

Query: 231 NIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIG 289
           N     +    F  L  L  L L            F     L+YL L  N LQ  +    
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 290 LENLTFIKTLDLSFNELGQDISEILDIISACAAF----ELESLFLRGCKISGQLTNQLGL 345
             +L  +  L L  N +   + E         AF     L+ L L   +++         
Sbjct: 149 FRDLGNLTHLFLHGNRI-SSVPE--------RAFRGLHSLDRLLLHQNRVA---HVHPHA 196

Query: 346 FKNLH---TLALSDNSVSGPLPP-ASGELSSLTYLDLSNNNLN 384
           F++L    TL L  N++S  LP  A   L +L YL L++N   
Sbjct: 197 FRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 9e-19
 Identities = 52/243 (21%), Positives = 79/243 (32%), Gaps = 29/243 (11%)

Query: 211 TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270
            ++P  +   +    + L  N         F+   +L  L L  N      +  F+    
Sbjct: 24  QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 271 LEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFE----LE 326
           LE L L  N    ++       L  + TL L    L Q++            F     L+
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGP--------GLFRGLAALQ 132

Query: 327 SLFLRGCKISGQLTNQLGLFK---NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
            L+L+   +          F+   NL  L L  N +S     A   L SL  L L  N +
Sbjct: 133 YLYLQDNALQ---ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 384 NGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLR------SCHLGPHFP 437
              +    F +L  L   Y   N+++        P   L  LRL        C   P   
Sbjct: 190 A-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LW 247

Query: 438 SWL 440
           +WL
Sbjct: 248 AWL 250

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.5 bits (207), Expect = 8e-18
 Identities = 48/250 (19%), Positives = 85/250 (34%), Gaps = 48/250 (19%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
              + + L  N+ +     S     +L  L L SN L+ I    F   + L  LD+ +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
            + ++         RL  L+L    L  + P     L++LQ L +  N L          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ--------- 142

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
                         A+   +F +                     L  +  + +  N  S 
Sbjct: 143 --------------ALPDDTFRD---------------------LGNLTHLFLHGNRIS- 166

Query: 661 EIPMEV-TNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQISGKIPQSMSSLS 718
            +P      L  L  L L  N  +  +      ++  + +L L  N +S    ++++ L 
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 719 FLNHLNLSDN 728
            L +L L+DN
Sbjct: 226 ALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 41/228 (17%), Positives = 70/228 (30%), Gaps = 43/228 (18%)

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
           ++   + L  N ++  +    F                             L  L L S 
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACR------------------------NLTILWLHSN 66

Query: 431 HLGPHFPSWLHSQKHLSKLDIS-NTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLG 489
            L     +       L +LD+S N ++  + P  F                  L  L+L 
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL-------------GRLHTLHLD 113

Query: 490 NNKFTGSIPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTW 548
                  +   +   L +L+ L L+ N L  +    F +   L  L +  N    ++P  
Sbjct: 114 RCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPER 171

Query: 549 MGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK 596
                  L  L L  N++  + P     L  L  L +  N LS ++P 
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 56/308 (18%), Positives = 89/308 (28%), Gaps = 103/308 (33%)

Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
           +P G     + + + L  N+ +   +  F    +L  L L  N L   I +     L  +
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALL 82

Query: 297 KTLDLSFNELGQDISEILDIISACAAFE----LESLFLRGCKISGQLTNQLGLFKNLHTL 352
           + LDLS N     +  +       A F     L +L L  C +        GLF+ L   
Sbjct: 83  EQLDLSDNA---QLRSVDP-----ATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGL--- 128

Query: 353 ALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKI 412
                             ++L YL L +N L   + +  F +L                 
Sbjct: 129 ------------------AALQYLYLQDNALQ-ALPDDTFRDLG---------------- 153

Query: 413 NSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDT 472
                                           +L+ L +   RIS +  R F        
Sbjct: 154 --------------------------------NLTHLFLHGNRISSVPERAFRG------ 175

Query: 473 IPDCWMNWPDLRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQL 531
                     L  L L  N+    +       L  L +L L +N LS +          L
Sbjct: 176 -------LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 532 VALDMGEN 539
             L + +N
Sbjct: 228 QYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 41/241 (17%)

Query: 446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-GTL 504
             ++ +   RIS +    F                 +L +L L +N     I  +    L
Sbjct: 34  SQRIFLHGNRISHVPAASFRAC-------------RNLTILWLHSNVLA-RIDAAAFTGL 79

Query: 505 TSLRSLNLRSN-RLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563
             L  L+L  N +L  + P  F    +L  L +        +   +    + L+ L L+ 
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQD 138

Query: 564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIG-SHHQVKAIYHASFE 622
           N L  +       L +L  L +  NR+S    +      ++  +    ++V  ++  +F 
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 623 NDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNS 681
           +                     L  + ++ +  NN S  +P E    L+ LQ L L+ N 
Sbjct: 199 D---------------------LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNP 236

Query: 682 F 682
           +
Sbjct: 237 W 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 27/182 (14%)

Query: 553 FSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMAT--IGSH 610
            +  + + L  N++  +         +L IL +  N L+            +    +  +
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 611 HQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNL 669
            Q++++  A+F                       L  + ++ +       E+   +   L
Sbjct: 91  AQLRSVDPATFHG---------------------LGRLHTLHLDRCGLQ-ELGPGLFRGL 128

Query: 670 KGLQSLNLSHNSFIGKIPETI-GNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDN 728
             LQ L L  N+ +  +P+    ++ ++  L L GN+IS    ++   L  L+ L L  N
Sbjct: 129 AALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 729 KL 730
           ++
Sbjct: 188 RV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 45/187 (24%), Positives = 66/187 (35%), Gaps = 17/187 (9%)

Query: 51  ELNLERSELGGKINP-ALVDLKHLNLLDLSGNDFQGIQI----PEYIGSMDNLRYLNLSG 105
            L L  + L  +I+  A   L  L  LDLS N     Q+    P     +  L  L+L  
Sbjct: 60  ILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA----QLRSVDPATFHGLGRLHTLHLDR 114

Query: 106 AGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWL 165
            G     P     L+ L +L L  +   L+            L HL      +    +  
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDN--ALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 166 LVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLV 224
                L SL  L L   ++ H  P A  +   L  L L  N    +++P+     L  L 
Sbjct: 173 F--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQ 228

Query: 225 FLDLSSN 231
           +L L+ N
Sbjct: 229 YLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 667 TNLKGLQSLNLSHNSFIGKIP-ETIGNMRSIESLDLSGNQISGKIPQSM-SSLSFLNHLN 724
           T L  L+ L+LS N+ +  +   T   +  + +L L    +  ++   +   L+ L +L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY 135

Query: 725 LSDNKLVGKIPSST 738
           L DN L   +P  T
Sbjct: 136 LQDNALQ-ALPDDT 148

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 671 GLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNK 729
             Q + L  N  I  +P  +    R++  L L  N ++     + + L+ L  L+LSDN 
Sbjct: 33  ASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 730 LVGKIPSST 738
            +  +  +T
Sbjct: 92  QLRSVDPAT 100

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (257), Expect = 3e-23
 Identities = 68/380 (17%), Positives = 109/380 (28%), Gaps = 108/380 (28%)

Query: 170 SLPSLKVLKLFSCKLHHFAPLASAN---------FSSLNALDLSGNLFGKTSIPSWVFGL 220
            +P+L ++ L S  L        +           +  + +           +P  +   
Sbjct: 8   GMPALLLVSLLSVLLMGCVAETGSAQTCPSVCSCSNQFSKVICVRKNL--REVPDGIS-- 63

Query: 221 SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNR 280
           ++   L+L  N  +    + FK+L  L  L LS N   +     F+   +L  L L  NR
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 281 LQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLT 340
           L  TI +     L+ +K L L  N     I  I                           
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNP----IESI--------------------------- 151

Query: 341 NQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
                F                       + SL  LDL        ISE  F  L+ L +
Sbjct: 152 -PSYAFNR---------------------IPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 401 FYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDII 460
                 ++        +P    L                      L +LD+S   +S I 
Sbjct: 190 LNLAMCNLRE------IPNLTPLI--------------------KLDELDLSGNHLSAIR 223

Query: 461 PRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSNRLSG 519
           P  F                  L+ L +  ++    I  +    L SL  +NL  N L+ 
Sbjct: 224 PGSFQ-------------GLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL 269

Query: 520 IIPVPFENCSQLVALDMGEN 539
           +    F     L  + +  N
Sbjct: 270 LPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (252), Expect = 9e-23
 Identities = 58/222 (26%), Positives = 90/222 (40%), Gaps = 22/222 (9%)

Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDL 228
            L  L++L+L    +      A    ++LN L+L  N    T+IP+  F  LS L  L L
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWL 143

Query: 229 SSNIFRGPIPDG-FKNLTSLRYLDLS-YNQFNSTISDCFSNFDDLEYLSLGYNRLQGTIS 286
            +N     IP   F  + SLR LDL    + +      F    +L YL+L    L+  I 
Sbjct: 144 RNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201

Query: 287 SIGLENLTFIKTLDLSFNELGQDISEILDIISACAAF----ELESLFLRGCKISGQLTNQ 342
           +  L  L  +  LDLS N L   I           +F     L+ L++   +I     N 
Sbjct: 202 N--LTPLIKLDELDLSGNHL-SAIRP--------GSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 343 LGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384
               ++L  + L+ N+++         L  L  + L +N  N
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.3 bits (245), Expect = 8e-22
 Identities = 56/236 (23%), Positives = 91/236 (38%), Gaps = 14/236 (5%)

Query: 72  HLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY 131
           +  LL+L  N  Q I+       + +L  L LS              L+NL  L+L  + 
Sbjct: 65  NTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN- 122

Query: 132 YELRVEDISWLAGPSLLEHLDTSD--VDLIKASDWLLVINSLPSLKVLKLFSC-KLHHFA 188
             L           S L+ L   +  ++ I +  +    N +PSL+ L L    +L + +
Sbjct: 123 -RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF----NRIPSLRRLDLGELKRLSYIS 177

Query: 189 PLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR 248
             A    S+L  L+L+        IP+    L  L  LDLS N      P  F+ L  L+
Sbjct: 178 EGAFEGLSNLRYLNLAMCNL--REIPNLT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 249 YLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
            L +  +Q      + F N   L  ++L +N L   +       L  ++ + L  N
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.7 bits (228), Expect = 9e-20
 Identities = 59/252 (23%), Positives = 95/252 (37%), Gaps = 50/252 (19%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
            + R+LNL  N+       S   L  L  L L  N +  I    F   + L  L++ +N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVA-YNRLSGSVPKCIN 599
            +  IP       S+L+ L LR+N +  I       + SL+ LD+    RLS        
Sbjct: 124 -LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-------- 174

Query: 600 NFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFS 659
                           I   +FE                      L+ +R ++++M N  
Sbjct: 175 ---------------YISEGAFEG---------------------LSNLRYLNLAMCNLR 198

Query: 660 GEIPMEVTNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQISGKIPQSMSSLS 718
            EIP  +T L  L  L+LS N  +  I   +   +  ++ L +  +QI      +  +L 
Sbjct: 199 -EIP-NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255

Query: 719 FLNHLNLSDNKL 730
            L  +NL+ N L
Sbjct: 256 SLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 53/218 (24%), Positives = 80/218 (36%), Gaps = 9/218 (4%)

Query: 66  ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL 125
           +   L+HL +L LS N  + I+       + NL  L L               LS L  L
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLH 185
            L  +   +             L  LD  ++  +           L +L+ L L  C L 
Sbjct: 142 WLRNN--PIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLR 198

Query: 186 HFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKNL 244
               L       L+ LDLSGN    ++I    F GL  L  L +  +  +    + F NL
Sbjct: 199 EIPNLT--PLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ 282
            SL  ++L++N       D F+    LE + L +N   
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 62/267 (23%), Positives = 98/267 (36%), Gaps = 41/267 (15%)

Query: 419 PFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWM 478
                 L L    +     +     +HL  L +S   I  I    F              
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL----------- 111

Query: 479 NWPDLRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMG 537
              +L  L L +N+ T +IP      L+ L+ L LR+N +  I    F     L  LD+G
Sbjct: 112 --ANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168

Query: 538 ENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKC 597
           E + +  I     E  S LR LNL    L  I  +    L  L  LD++ N LS   P  
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT--PLIKLDELDLSGNHLSAIRPGS 226

Query: 598 INNFTAMATIG-SHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMN 656
                 +  +     Q++ I   +F+N                     L  +  I+++ N
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDN---------------------LQSLVEINLAHN 265

Query: 657 NFSGEIPMEV-TNLKGLQSLNLSHNSF 682
           N +  +P ++ T L  L+ ++L HN +
Sbjct: 266 NLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 45/204 (22%), Positives = 73/204 (35%), Gaps = 50/204 (24%)

Query: 553 FSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQ 612
            +  R+LNL  N++  I      HL  L+IL ++ N +                      
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR--------------------- 101

Query: 613 VKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKG 671
              I   +F                       L  + ++++  N  +  IP      L  
Sbjct: 102 --TIEIGAFNG---------------------LANLNTLELFDNRLT-TIPNGAFVYLSK 137

Query: 672 LQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSG-NQISGKIPQSMSSLSFLNHLNLSDNK 729
           L+ L L +N  I  IP      + S+  LDL    ++S     +   LS L +LNL+   
Sbjct: 138 LKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 730 LVGKIPSSTQLQSFGASSITGNDL 753
           L  +IP+ T L       ++GN L
Sbjct: 197 LR-EIPNLTPLIKLDELDLSGNHL 219

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (251), Expect = 3e-23
 Identities = 55/318 (17%), Positives = 114/318 (35%), Gaps = 29/318 (9%)

Query: 72  HLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY 131
           HL ++  S    +   +P+ I    +   L+L     +         L +L  L L  + 
Sbjct: 34  HLRVVQCSDLGLK--AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN- 88

Query: 132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLA 191
            ++        +    L+ L  S   L++     +  N   SL  L++   ++       
Sbjct: 89  -KISKIHEKAFSPLRKLQKLYISKNHLVE-----IPPNLPSSLVELRIHDNRIRKVPKGV 142

Query: 192 SANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD 251
            +   ++N +++ GN    +      F    L +L +S     G IP       +L  L 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELH 199

Query: 252 LSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS 311
           L +N+  +   +    +  L  L LG+N+++  I +  L  L  ++ L L  N+L   + 
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL-SRVP 257

Query: 312 EILDIISACAAFELESLFLRGCKISG------QLTNQLGLFKNLHTLALSDNSVS-GPLP 364
             L  +       L+ ++L    I+                   + ++L +N V    + 
Sbjct: 258 AGLPDLKL-----LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 365 PASGE-LSSLTYLDLSNN 381
           PA+   ++    +   N 
Sbjct: 313 PATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.9 bits (239), Expect = 1e-21
 Identities = 62/354 (17%), Positives = 100/354 (28%), Gaps = 85/354 (24%)

Query: 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSS 230
           P   +L L +  +             L AL L  N    + I    F  L  L  L +S 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISK 111

Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGL 290
           N     IP      +SL  L +  N+        FS   ++  + +G N L+    + G 
Sbjct: 112 NHLVE-IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE----NSGF 164

Query: 291 ENLTF----IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF 346
           E   F    +  L +S  +L          I       L  L L   KI       L  +
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTG--------IPKDLPETLNELHLDHNKIQAIELEDLLRY 216

Query: 347 KNLHTLALSDNSVSGPLPPAS-GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG 405
             L+ L L  N +   +   S   L +L  L L NN L+                     
Sbjct: 217 SKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS--------------------- 254

Query: 406 NSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW 465
                                          P+ L   K L  + +    I+ +    F 
Sbjct: 255 -----------------------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285

Query: 466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT---LTSLRSLNLRSNR 516
              +        +       ++L NN       +   T   +T   ++   + +
Sbjct: 286 PVGFG-------VKRAYYNGISLFNNPVP-YWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 48/263 (18%), Positives = 80/263 (30%), Gaps = 23/263 (8%)

Query: 51  ELNLERSELGGKINP-ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFA 109
            L L  +++  KI+  A   L+ L  L +S N    I          +L  L +      
Sbjct: 82  ALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIP----PNLPSSLVELRIHDNRIR 136

Query: 110 GWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVIN 169
                    L N+  +++ G+  E    +     G   L +L  S+  L          +
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPK-----D 190

Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDL 228
              +L  L L   K+          +S L  L L  N      I +     L  L  L L
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHL 248

Query: 229 SSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFS------NFDDLEYLSLGYNRLQ 282
            +N     +P G  +L  L+ + L  N       + F              +SL  N + 
Sbjct: 249 DNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

Query: 283 -GTISSIGLENLTFIKTLDLSFN 304
              +       +T    +     
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.8 bits (218), Expect = 7e-19
 Identities = 49/259 (18%), Positives = 90/259 (34%), Gaps = 45/259 (17%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
           PD  +L+L NN  +         L  L +L L +N++S I    F    +L  L + +N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
            V  IP       S L  L +  N++  +       L ++  +++  N L  S       
Sbjct: 114 LV-EIPP---NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS------- 162

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNL-------VRSIDI 653
                              +F+         L +    +    +  +       +  + +
Sbjct: 163 --------------GFEPGAFDG--------LKLNYLRISEAKLTGIPKDLPETLNELHL 200

Query: 654 SMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQISGKIP 711
             N     I +E       L  L L HN  I  I   ++  + ++  L L  N++S ++P
Sbjct: 201 DHNKIQ-AIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 712 QSMSSLSFLNHLNLSDNKL 730
             +  L  L  + L  N +
Sbjct: 258 AGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 48/298 (16%), Positives = 95/298 (31%), Gaps = 80/298 (26%)

Query: 444 KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT 503
           +HL  L + N +IS I  + F                  L+ L +  N       I    
Sbjct: 78  QHLYALVLVNNKISKIHEKAFSPL-------------RKLQKLYISKNHLVE---IPPNL 121

Query: 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF-VGNIPTWMGERFS--RLRILN 560
            +SL  L +  NR+  +    F     +  ++MG N              F   +L  L 
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA---FDGLKLNYLR 178

Query: 561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHAS 620
           +   KL GI         +L  L + +N++                        AI    
Sbjct: 179 ISEAKLTGIPKD---LPETLNELHLDHNKIQ-----------------------AIELED 212

Query: 621 FENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSH 679
                                    + +  + +  N     I     + L  L+ L+L +
Sbjct: 213 LLR---------------------YSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDN 250

Query: 680 NSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSM-------SSLSFLNHLNLSDNKL 730
           N  + ++P  + +++ ++ + L  N I+ K+  +           ++ N ++L +N +
Sbjct: 251 NK-LSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 54/263 (20%), Positives = 91/263 (34%), Gaps = 57/263 (21%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
            LRV+   +     ++P           L+L++N +S +    F+               
Sbjct: 34  HLRVVQCSDLGLK-AVP--KEISPDTTLLDLQNNDISELRKDDFKG-------------- 76

Query: 542 VGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNF 601
                         L  L L +NK+  I       L  LQ L ++ N L   +P   N  
Sbjct: 77  -----------LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLP 122

Query: 602 TAMATIGSHH-QVKAIYHASFENDYIVEEISLVMKGFMVEYNSI------------LNLV 648
           +++  +  H  +++ +    F     +  I +         N +            L L 
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM-------GGNPLENSGFEPGAFDGLKL- 174

Query: 649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQIS 707
             + IS    +  IP ++   + L  L+L HN  I  I    +     +  L L  NQI 
Sbjct: 175 NYLRISEAKLT-GIPKDL--PETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIR 230

Query: 708 GKIPQSMSSLSFLNHLNLSDNKL 730
                S+S L  L  L+L +NKL
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKL 253

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.9 bits (246), Expect = 1e-21
 Identities = 60/301 (19%), Positives = 99/301 (32%), Gaps = 45/301 (14%)

Query: 243 NLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLS 302
           N  SL   +  YN  + T +D FS +D  E  +L        +S +    +     L L+
Sbjct: 9   NNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 303 FNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGP 362
              L    S + D +      ++  L +    +   L        +L  L   DN +S  
Sbjct: 68  RLNL----SSLPDNLPP----QITVLEITQNALI-SLPELPA---SLEYLDACDNRLST- 114

Query: 363 LPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVP--PF 420
           LP      +SL +LD+ NN L  +        L  +    A+ N    ++    +P  P 
Sbjct: 115 LPE---LPASLKHLDVDNNQLTMLPELP--ALLEYI---NADNN----QLTM--LPELPT 160

Query: 421 QLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNW 480
            L  L +R+  L    P    S   L  LD+S   +  +                   + 
Sbjct: 161 SLEVLSVRNNQLT-FLPELPES---LEALDVSTNLLESL----------PAVPVRNHHSE 206

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
                     N+ T  IP ++ +L    ++ L  N LS  I       +           
Sbjct: 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265

Query: 541 F 541
           F
Sbjct: 266 F 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.6 bits (222), Expect = 9e-19
 Identities = 48/281 (17%), Positives = 94/281 (33%), Gaps = 66/281 (23%)

Query: 473 IPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLV 532
               W  W    +     N+    +   +  +     L L    LS +   P     Q+ 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSL---PDNLPPQIT 83

Query: 533 ALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSG 592
            L++ +N  + ++P    E  + L  L+   N+L  +        +SL+ LDV  N+L+ 
Sbjct: 84  VLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE----LPASLKHLDVDNNQLT- 133

Query: 593 SVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYN-------SIL 645
            +P+                                     ++    + N          
Sbjct: 134 MLPELPAL---------------------------------LEYINADNNQLTMLPELPT 160

Query: 646 NLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIES----LDL 701
           +L   + +  N  +  +P      + L++L++S N  +  +P         E        
Sbjct: 161 SL-EVLSVRNNQLT-FLP---ELPESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRC 214

Query: 702 SGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQS 742
             N+I+  IP+++ SL     + L DN L  +I  S   Q+
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.0 bits (210), Expect = 3e-17
 Identities = 61/403 (15%), Positives = 128/403 (31%), Gaps = 69/403 (17%)

Query: 190 LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRY 249
           L     +  + L L+      +S+P  +     +  L+++ N     +P+   +L    Y
Sbjct: 53  LKECLINQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALI-SLPELPASLE---Y 104

Query: 250 LDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQD 309
           LD   N+ ++ + +  ++   L++L +  N+L           L   + ++   N+L   
Sbjct: 105 LDACDNRLST-LPELPAS---LKHLDVDNNQLTMLPELPA--LL---EYINADNNQL--- 152

Query: 310 ISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGE 369
            + + ++ +      LE L +R  +++  L        +L  L +S N +   LP     
Sbjct: 153 -TMLPELPT-----SLEVLSVRNNQLT-FLPELPE---SLEALDVSTNLLES-LPAVPVR 201

Query: 370 LSSLT----YLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLAL 425
                    +     N +  +   I   +L          N               L + 
Sbjct: 202 NHHSEETEIFFRCRENRITHIPENI--LSLDPTCTIILEDN--------------PLSSR 245

Query: 426 RLRSCHLGPHFPSWLHSQKHLSKLDISNTRIS----DIIPRWFWNSIYQDTIPDCWMNWP 481
              S       P +   + + S  D     +     D +  WF  +  Q  +   W  + 
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENK-QSDVSQIWHAFE 304

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
                    N F+ +    +    S R+ +    +++  +    E  S    L       
Sbjct: 305 HE----EHANTFS-AFLDRLSDTVSARNTSGFREQVAAWL----EKLSASAELRQQSFAV 355

Query: 542 VGNIPTWMGER----FSRLRILNLRSNKLHGIFPIQICHLSSL 580
             +      +R    ++ LR   L      G+F      L SL
Sbjct: 356 AADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.3 bits (208), Expect = 4e-17
 Identities = 65/368 (17%), Positives = 117/368 (31%), Gaps = 113/368 (30%)

Query: 370 LSSLTYLDLSNNNLNGMISEIH---FGNLTELAFFYANGNSVNFKINSKWVPPFQLLALR 426
           L       LS N+    IS  +   F    +       G + N           + ++L 
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRN-----------EAVSL- 52

Query: 427 LRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVL 486
           L+ C +              S+L ++   +S + P         D +P      P + VL
Sbjct: 53  LKECLI-----------NQFSELQLNRLNLSSL-P---------DNLP------PQITVL 85

Query: 487 NLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIP 546
            +  N    S+P       SL  L+   NRLS  +P   E  + L  LD+  N+      
Sbjct: 86  EITQNALI-SLPEL---PASLEYLDACDNRLS-TLP---ELPASLKHLDVDNNQL----- 132

Query: 547 TWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMAT 606
           T + E  + L  +N  +N+L  +  +     +SL++L V  N+L+  +P+   +      
Sbjct: 133 TMLPELPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLT-FLPELPESLE---- 183

Query: 607 IGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV 666
                                                 L++         N    +P   
Sbjct: 184 -------------------------------------ALDV-------STNLLESLPAVP 199

Query: 667 TNLKGLQS----LNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNH 722
                 +          N  I  IPE I ++    ++ L  N +S +I +S+S  +    
Sbjct: 200 VRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 723 LNLSDNKL 730
            +      
Sbjct: 259 YHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.3 bits (208), Expect = 4e-17
 Identities = 54/343 (15%), Positives = 106/343 (30%), Gaps = 56/343 (16%)

Query: 220 LSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
           LS   F +  S  +       +           + N+  S + +C    +    L L   
Sbjct: 13  LSQNSFYNTISGTYAD-YFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRL 69

Query: 280 RLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQL 339
            L  ++       +T    L+++ N L      + ++ +      LE L     ++S  L
Sbjct: 70  NLS-SLPDNLPPQIT---VLEITQNAL----ISLPELPA-----SLEYLDACDNRLS-TL 115

Query: 340 TNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
                   +L  L + +N ++  LP      + L Y++  NN L  +       +L  L 
Sbjct: 116 PELPA---SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPELP--TSLEVL- 165

Query: 400 FFYANGNSVNFKINSKWVP--PFQLLALRLRSCHLG---PHFPSWLHSQKHLSKLDISNT 454
                 N    ++    +P  P  L AL + +  L           HS++          
Sbjct: 166 --SVRNN----QLTF--LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN 217

Query: 455 RISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRS 514
           RI+               IP+  ++      + L +N  +  I  S+   T+    +   
Sbjct: 218 RIT--------------HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 515 NRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLR 557
              S       +N       D     F  N  + + + +    
Sbjct: 264 IYFSMSD--GQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFE 304

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.5 bits (193), Expect = 3e-15
 Identities = 45/259 (17%), Positives = 84/259 (32%), Gaps = 50/259 (19%)

Query: 70  LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNL---------- 119
           +   + L L+  +     +P+ +     +  L ++       +P    +L          
Sbjct: 58  INQFSELQLNRLNLS--SLPDNLPP--QITVLEITQNALIS-LPELPASLEYLDACDNRL 112

Query: 120 -------SNLMHLDLSGSYYELRVEDISWL-AGPSLLEHLDTSDVDLIKASDWLLVINSL 171
                  ++L HLD+  +        ++ L   P+LLE+++  +  L    +        
Sbjct: 113 STLPELPASLKHLDVDNNQ-------LTMLPELPALLEYINADNNQLTMLPE------LP 159

Query: 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL----VFLD 227
            SL+VL + + +L     L      SL ALD+S NL    S+P+            +F  
Sbjct: 160 TSLEVLSVRNNQLTFLPEL----PESLEALDVSTNLL--ESLPAVPVRNHHSEETEIFFR 213

Query: 228 LSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISS 287
              N     IP+   +L     + L  N  +S I     +          +        S
Sbjct: 214 CRENRITH-IPENILSLDPTCTIILEDNPLSSRI---RESLSQQTAQPDYHGPRIYFSMS 269

Query: 288 IGLENLTFIKTLDLSFNEL 306
            G +N       D      
Sbjct: 270 DGQQNTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 9e-14
 Identities = 56/362 (15%), Positives = 110/362 (30%), Gaps = 105/362 (29%)

Query: 348 NLHTLA--LSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG 405
           N  +L+     N++SG                L   N N  +S +    +          
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--------- 59

Query: 406 NSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW 465
                          Q   L+L   +L    P  L     ++ L+I+   +  + P    
Sbjct: 60  ---------------QFSELQLNRLNL-SSLPDNL--PPQITVLEITQNALISL-PELP- 99

Query: 466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPF 525
                            L  L+  +N+ + ++P       SL+ L++ +N+L+ ++P   
Sbjct: 100 ---------------ASLEYLDACDNRLS-TLP---ELPASLKHLDVDNNQLT-MLP--- 136

Query: 526 ENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDV 585
           E  + L  ++   N+    +P    E  + L +L++R+N+L  +  +      SL+ LDV
Sbjct: 137 ELPALLEYINADNNQLT-MLP----ELPTSLEVLSVRNNQLTFLPEL----PESLEALDV 187

Query: 586 AYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSIL 645
           + N L  S+P                                                  
Sbjct: 188 STNLLE-SLPAVPVRNH----------------------------------------HSE 206

Query: 646 NLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQ 705
                     N  +  IP  + +L    ++ L  N    +I E++    +          
Sbjct: 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265

Query: 706 IS 707
            S
Sbjct: 266 FS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 23/107 (21%), Positives = 50/107 (46%), Gaps = 13/107 (12%)

Query: 642 NSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDL 701
             ++N    + ++  N S  +P  +     +  L ++ N+ +  +PE   ++   E LD 
Sbjct: 55  ECLINQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNA-LISLPELPASL---EYLDA 107

Query: 702 SGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQSFGASS 747
             N++S  +P+  +SL    HL++ +N+L   +P     L+   A +
Sbjct: 108 CDNRLS-TLPELPASL---KHLDVDNNQLT-MLPELPALLEYINADN 149

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 12/109 (11%)

Query: 638 MVEYNSILNLVRSIDISMNNFSG---EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMR 694
           M+  N+  +L  S +   N  SG   +        +       + N  +  + E +  + 
Sbjct: 4   MLPINNNFSL--SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--IN 59

Query: 695 SIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQS 742
               L L+   +S  +P ++     +  L ++ N L+  +P     L+ 
Sbjct: 60  QFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPASLEY 104

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.4 bits (235), Expect = 5e-21
 Identities = 58/328 (17%), Positives = 105/328 (32%), Gaps = 39/328 (11%)

Query: 179 LFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIP 238
           + S      +  AS +         S       SIPS +     +  LDLS+N       
Sbjct: 14  IISLSKEESSNQASLSCDRNGICKGSSGSL--NSIPSGLT--EAVKSLDLSNNRITYISN 69

Query: 239 DGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKT 298
              +   +L+ L L+ N  N+   D FS+   LE+L L YN L   +SS   + L+ +  
Sbjct: 70  SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTF 128

Query: 299 LDLSFNELGQDISEILDIISACAAF-ELESLFLRGCKISGQLTN-QLGLFK---NLHTLA 353
           L+L  N            +   + F  L  L +         T  Q   F     L  L 
Sbjct: 129 LNLLGNPY--------KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180

Query: 354 LSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSV-NFKI 412
           +  + +    P +   + ++++L L       ++ EI     + +         +  F  
Sbjct: 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 413 NSKWVPPFQLLA--LRLRSCHLG----PHFPSWLHSQKHLSKLDISNTRISDIIPRWFWN 466
           +         L      R+  +           L+    L +L+ S  ++  +    F  
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF-- 297

Query: 467 SIYQDTIPDCWMNWPDLRVLNLGNNKFT 494
                           L+ + L  N + 
Sbjct: 298 -----------DRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 57/306 (18%), Positives = 99/306 (32%), Gaps = 30/306 (9%)

Query: 64  NPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLM 123
           N A +      +   S        IP  +     ++ L+LS           L    NL 
Sbjct: 24  NQASLSCDRNGICKGSSGSLN--SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQ 79

Query: 124 HLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDL--IKASDWLLVINSLPSLKVLKLFS 181
            L L+ +   +   +    +    LEHLD S   L  + +S        L SL  L L  
Sbjct: 80  ALVLTSN--GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLG 133

Query: 182 CKLHHFAPLASANFSSLNALDLSGNLFGK--TSIPSWVF-GLSDLVFLDLSSNIFRGPIP 238
                     ++ FS L  L +         T I    F GL+ L  L++ ++  +   P
Sbjct: 134 NPYKTLGE--TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191

Query: 239 DGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQG-------TISSIGLE 291
              K++ ++ +L L   Q    +         +E L L    L         T  +  L 
Sbjct: 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 292 NLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHT 351
                + + ++   L   + ++L+ IS      L  L     ++            +L  
Sbjct: 252 KKFTFRNVKITDESL-FQVMKLLNQIS-----GLLELEFSRNQLKSVPDGIFDRLTSLQK 305

Query: 352 LALSDN 357
           + L  N
Sbjct: 306 IWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.9 bits (205), Expect = 4e-17
 Identities = 52/289 (17%), Positives = 110/289 (38%), Gaps = 33/289 (11%)

Query: 446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-GTL 504
           +  LD+SN RI+ I                      +L+ L L +N    +I      +L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRC-------------VNLQALVLTSNGIN-TIEEDSFSSL 99

Query: 505 TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN 564
            SL  L+L  N LS +    F+  S L  L++  N +     T +    ++L+IL + + 
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 565 -KLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIG-SHHQVKAIYHASFE 622
                I       L+ L+ L++  + L    PK + +   ++ +     Q   +     +
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219

Query: 623 NDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSF 682
               VE + L         ++ L+     ++S    +      +      +++ ++  S 
Sbjct: 220 VTSSVECLEL--------RDTDLDTFHFSELSTGETNS-----LIKKFTFRNVKITDES- 265

Query: 683 IGKIPETIGNMRSIESLDLSGNQISGKIPQSM-SSLSFLNHLNLSDNKL 730
           + ++ + +  +  +  L+ S NQ+   +P  +   L+ L  + L  N  
Sbjct: 266 LFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 58/360 (16%), Positives = 103/360 (28%), Gaps = 102/360 (28%)

Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
           IP G     +++ LDLS N+     +       +L+ L L  N +  TI      +L  +
Sbjct: 46  IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL 102

Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
           + LDLS+N L  ++S                                  FK L       
Sbjct: 103 EHLDLSYNYL-SNLSS-------------------------------SWFKPL------- 123

Query: 357 NSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKW 416
                         SSLT+L+L  N    +     F +LT+L                  
Sbjct: 124 --------------SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM---------- 159

Query: 417 VPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDC 476
                   ++                   L +L+I  + +    P+   +          
Sbjct: 160 ---DTFTKIQ----------RKDFAGLTFLEELEIDASDLQSYEPKSLKSI--------- 197

Query: 477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG-----IIPVPFENCSQL 531
                ++  L L   +    + I +   +S+  L LR   L       +      +  + 
Sbjct: 198 ----QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 532 VAL---DMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYN 588
                  + +      +        S L  L    N+L  +       L+SLQ + +  N
Sbjct: 254 FTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 43/264 (16%), Positives = 84/264 (31%), Gaps = 42/264 (15%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
               +    +     SIP   G   +++SL+L +NR++ I     + C  L AL +  N 
Sbjct: 31  DRNGICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS----GSVPK 596
            +  I          L  L+L  N L  +       LSSL  L++  N        S+  
Sbjct: 88  -INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146

Query: 597 CINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMN 656
            +     +  +G+      I    F                       L  +  ++I  +
Sbjct: 147 HLTKLQIL-RVGNMDTFTKIQRKDFAG---------------------LTFLEELEIDAS 184

Query: 657 NFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETI-GNMRSIESLDLSGNQISGKIPQSM 714
           +       +   +++ +  L L        + E       S+E L+L    +       +
Sbjct: 185 DLQ-SYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 715 SSLSF--------LNHLNLSDNKL 730
           S+             ++ ++D  L
Sbjct: 243 STGETNSLIKKFTFRNVKITDESL 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.0 bits (223), Expect = 9e-20
 Identities = 66/344 (19%), Positives = 111/344 (32%), Gaps = 57/344 (16%)

Query: 263 DCFSNFDDLE-YLSLGYNRLQGT---ISSIGLENLTFIKTLDLSFNELGQDISEILDIIS 318
            C  NF D +   S  +N L      +   G      +K +D   +      ++I+  +S
Sbjct: 12  SCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLG--QFTDIIKSLS 69

Query: 319 ACAAFELESLFLRGCKISGQLTNQLGLFKN---LHTLALSDNSVSGPLPP--ASGELSSL 373
                 L+ L +R  +I  ++            L  L L +  V+G  PP         L
Sbjct: 70  ------LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 374 TYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLG 433
             L+L N +     +      L EL  +   G                L  L +   H  
Sbjct: 124 NILNLRNVSWATRDAW-----LAELQQWLKPG----------------LKVLSIAQAHSL 162

Query: 434 PHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKF 493
                 +     LS LD+S+            +++       C + +P L+VL L N   
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERG--LISAL-------CPLKFPTLQVLALRNAGM 213

Query: 494 T---GSIPISMGTLTSLRSLNLRSNRLSGIIPVP-FENCSQLVALDMGENEFVGNIPTWM 549
               G           L+ L+L  N L      P  +  SQL +L++        +    
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT----GLKQVP 269

Query: 550 GERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGS 593
               ++L +L+L  N+L          L  +  L +  N    S
Sbjct: 270 KGLPAKLSVLDLSYNRLDRNPSPD--ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.0 bits (218), Expect = 4e-19
 Identities = 46/247 (18%), Positives = 76/247 (30%), Gaps = 46/247 (18%)

Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLH----HFAPLASANFSSLNALDL 203
           L+ L   ++++   +   L+  + P L +L L +          A L       L  L +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 204 SGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIP----DGFKNLTSLRYLDLSYNQFNS 259
           +       S          L  LDLS N   G              +L+ L L      +
Sbjct: 157 AQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 260 ---TISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDI 316
                S   +    L+ L L +N L+    +   +  + + +L+LSF             
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT------------ 263

Query: 317 ISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYL 376
                   L+ +               GL   L  L LS N +     P+  EL  +  L
Sbjct: 264 -------GLKQVP-------------KGLPAKLSVLDLSYNRLDR--NPSPDELPQVGNL 301

Query: 377 DLSNNNL 383
            L  N  
Sbjct: 302 SLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.0 bits (218), Expect = 4e-19
 Identities = 41/260 (15%), Positives = 87/260 (33%), Gaps = 27/260 (10%)

Query: 482 DLRVLNLGNNKFTGSIPISM---GTLTSLRSLNLRSNRLSGIIPVPFENCS--QLVALDM 536
            L+ L +   +    I         ++ L+ L L +  ++G  P P    +   L  L++
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 537 GENEFVGN---IPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGS 593
               +      +          L++L++           Q+    +L  LD++ N   G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 594 VPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDI 653
                    +         ++ +   +   +      S +              ++ +D+
Sbjct: 189 RG-----LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA--------RVQLQGLDL 235

Query: 654 SMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQ 712
           S N+               L SLNLS    + ++P+ +     +  LDLS N++    P 
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDR-NP- 290

Query: 713 SMSSLSFLNHLNLSDNKLVG 732
           S   L  + +L+L  N  + 
Sbjct: 291 SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.9 bits (202), Expect = 4e-17
 Identities = 51/267 (19%), Positives = 75/267 (28%), Gaps = 62/267 (23%)

Query: 48  HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDN-----LRYLN 102
            + EL LE  E+ G   P L++    +L  L+  +        ++  +       L+ L+
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 103 LSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKAS 162
           ++ A    +   Q+     L  LDLS                                  
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSD--------------------------------- 182

Query: 163 DWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTS--IPSWVFGL 220
                 N     + L    C L          F +L  L L        S    +     
Sbjct: 183 ------NPELGERGLISALCPL---------KFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 221 SDLVFLDLSSNIFRG-PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
             L  LDLS N  R           + L  L+LS+           +    L  L L YN
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYN 284

Query: 280 RLQGTISSIGLENLTFIKTLDLSFNEL 306
           RL    S   L  +     L L  N  
Sbjct: 285 RLDRNPSPDELPQV---GNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 54/276 (19%), Positives = 86/276 (31%), Gaps = 24/276 (8%)

Query: 138 DISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL---HHFAPLASAN 194
           D+    G   LE+L    VD          I    SLK L + + ++     F  L    
Sbjct: 35  DVELYGGGRSLEYLLKR-VDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93

Query: 195 FSSLNALDLSGNLFGKTSIPSWVFG-LSDLVFLDLSSNIFRGPIPD----GFKNLTSLRY 249
            S L  L L       T+ P  +     DL  L+L +  +                 L+ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 250 LDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTIS---SIGLENLTFIKTLDLSFNEL 306
           L ++     +   +    F  L  L L  N   G      ++       ++ L L    +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF-KNLHTLALSDN---SVSGP 362
                    + +A    +L+ L L    +          +   L++L LS      V   
Sbjct: 214 ETPSGVCSALAAARV--QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271

Query: 363 LPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTEL 398
           LP        L+ LDLS N L+   S      +  L
Sbjct: 272 LPA------KLSVLDLSYNRLDRNPSPDELPQVGNL 301

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 63/350 (18%), Positives = 108/350 (30%), Gaps = 64/350 (18%)

Query: 181 SCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDG 240
           SC      P  S+ F+ L A D+     G++           L  +D  +++      D 
Sbjct: 14  SCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYL-------LKRVDTEADLG--QFTDI 64

Query: 241 FKNLTSLRYLDLSYNQFNSTISDCFSNFDD---LEYLSLGYNRLQGTI-SSIGLENLTFI 296
            K+L SL+ L +   +  S I            L+ L+L    + GT    +       +
Sbjct: 65  IKSL-SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
             L+L         + + ++                         Q  L   L  L+++ 
Sbjct: 124 NILNLRNVSWATRDAWLAEL-------------------------QQWLKPGLKVLSIAQ 158

Query: 357 NSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIH------FGNLTELAFFYANGNSVNF 410
                          +L+ LDLS+N   G    I       F  L  LA   A   + + 
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 411 KINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQ-KHLSKLDISNTRISDIIPRWFWNSIY 469
             ++      QL  L L    L     +        L+ L++S T +  +          
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK--- 275

Query: 470 QDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG 519
                        L VL+L  N+     P S   L  + +L+L+ N    
Sbjct: 276 -------------LSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 6e-15
 Identities = 56/315 (17%), Positives = 89/315 (28%), Gaps = 62/315 (19%)

Query: 197 SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDG---FKNLTSLRYLDLS 253
           SL  L    +        + +     L  L + +      I  G      ++ L+ L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 254 YNQFNSTISDCFSNFD--DLEYLSLGYNRLQGT---ISSIGLENLTFIKTLDLSFNELGQ 308
             +   T           DL  L+L           ++ +       +K L ++      
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 309 DISEILDIISACAAFELESLFLRGCKISGQL----TNQLGLFKNLHTLALSDN---SVSG 361
              E + +  A     L +L L      G+           F  L  LAL +    + SG
Sbjct: 164 FSCEQVRVFPA-----LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 362 PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQ 421
                +     L  LDLS+N+L            ++L                       
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS--------------------- 257

Query: 422 LLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWP 481
              L L    L    P  L ++  LS LD+S  R+                 P      P
Sbjct: 258 ---LNLSFTGL-KQVPKGLPAK--LSVLDLSYNRLD--------------RNPSPD-ELP 296

Query: 482 DLRVLNLGNNKFTGS 496
            +  L+L  N F  S
Sbjct: 297 QVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 7e-14
 Identities = 48/328 (14%), Positives = 87/328 (26%), Gaps = 66/328 (20%)

Query: 367 SGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPF---QLL 423
            G   SL YL    +    +           L         +  +I    +       L 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 424 ALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDL 483
            L L +  +    P  L          ++   +S      +   + Q   P        L
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG-------L 151

Query: 484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENC----SQLVALDMGEN 539
           +VL++            +    +L +L+L  N   G   +    C      L  L +   
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 540 EF--VGNIPTWMGERFSRLRILNLRSNKLHGIFPIQIC-HLSSLQILDVAYNRLSGSVPK 596
                  + + +     +L+ L+L  N L        C   S L  L++++  L   VPK
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270

Query: 597 CINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMN 656
            +                                                 +  +D+S N
Sbjct: 271 GL----------------------PAK------------------------LSVLDLSYN 284

Query: 657 NFSGEIPMEVTNLKGLQSLNLSHNSFIG 684
                 P     L  + +L+L  N F+ 
Sbjct: 285 RLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 38/200 (19%), Positives = 56/200 (28%), Gaps = 39/200 (19%)

Query: 43  NNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQG-IQIPEYI--GSMDNLR 99
             +   +  L++ ++         +     L+ LDLS N   G   +   +       L+
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 100 YLNLSGAGFA---GWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDV 156
            L L  AG     G           L  LDLS +        +   AG    +       
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-------LRDAAGAPSCDW------ 251

Query: 157 DLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSW 216
                            L  L L    L     +     + L+ LDLS N       PS 
Sbjct: 252 --------------PSQLNSLNLSFTGLKQ---VPKGLPAKLSVLDLSYNRL--DRNPS- 291

Query: 217 VFGLSDLVFLDLSSNIFRGP 236
              L  +  L L  N F   
Sbjct: 292 PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 28/196 (14%), Positives = 64/196 (32%), Gaps = 24/196 (12%)

Query: 555 RLRILNLRSNKLHGIFPIQICHL---SSLQILDVAYNRLSGSVPKCINNFTAMATIGSHH 611
            L+ L +R+ ++          +   S LQ L +    ++G+ P  +   T         
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT-------GP 121

Query: 612 QVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKG 671
            +  +   +         ++ +          +   ++ + I+  +       +V     
Sbjct: 122 DLNILNLRNVSWATRDAWLAEL-------QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174

Query: 672 LQSLNLSHNSFIGKIPETI----GNMRSIESLDLSGNQ---ISGKIPQSMSSLSFLNHLN 724
           L +L+LS N  +G+             +++ L L        SG      ++   L  L+
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 725 LSDNKLVGKIPSSTQL 740
           LS N L     + +  
Sbjct: 235 LSHNSLRDAAGAPSCD 250

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 56/221 (25%), Positives = 85/221 (38%), Gaps = 45/221 (20%)

Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDL 228
           S P L+VL L  C++      A  + S L+ L L+GN     S+    F GLS L  L  
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVA 107

Query: 229 SSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTIS-DCFSNFDDLEYLSLGYNRLQGTIS 286
                   + +    +L +L+ L++++N   S    + FSN  +LE+L L  N++Q +I 
Sbjct: 108 VETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIY 165

Query: 287 S---IGLENLTFIK-TLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQ 342
                 L  +  +  +LDLS N +   I                                
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPM-NFIQP------------------------------ 194

Query: 343 LGLFK--NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNN 381
            G FK   L  LAL  N +          L+SL  + L  N
Sbjct: 195 -GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 48/226 (21%), Positives = 74/226 (32%), Gaps = 41/226 (18%)

Query: 211 TSIPSWVFGL-SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFD 269
             IP     L      LDLS N  R      F +   L+ LDLS  +  +     + +  
Sbjct: 20  YKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 270 DLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISE----------------- 312
            L  L L  N +Q +++      L+ ++ L      L   +                   
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHN 134

Query: 313 -ILDIISACAAF----ELESLFLRGCKISGQLTNQLGLFKNLH-------TLALSDNSVS 360
            I         F     LE L L   KI    +      + LH       +L LS N ++
Sbjct: 135 LIQSFKLP-EYFSNLTNLEHLDLSSNKIQ---SIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 361 GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGN 406
             + P + +   L  L L  N L   + +  F  LT L   + + N
Sbjct: 191 F-IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.2 bits (183), Expect = 9e-15
 Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 10/146 (6%)

Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVF 225
              SL  L  L L    +   A  A +  SSL  L          S+ ++    L  L  
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKE 128

Query: 226 LDLSSN-IFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEY----LSLGYNR 280
           L+++ N I    +P+ F NLT+L +LDLS N+  S           +      L L  N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 281 LQGTISSIGLENLTFIKTLDLSFNEL 306
           +   I     + +   K L L  N+L
Sbjct: 189 MN-FIQPGAFKEIRL-KELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 55/303 (18%), Positives = 100/303 (33%), Gaps = 90/303 (29%)

Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
           IPD      S + LDLS+N      S  F +F +L+ L L    +Q TI     ++L+ +
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
            TL L+ N + Q ++          AF               L++       L  L   +
Sbjct: 79  STLILTGNPI-QSLAL--------GAFS-------------GLSS-------LQKLVAVE 109

Query: 357 NSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKW 416
            +++       G L +L  L++++N +       +F NLT L     + N          
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN---------- 159

Query: 417 VPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDC 476
                    +++S +            + L ++ + N                       
Sbjct: 160 ---------KIQSIYCT-DL-------RVLHQMPLLNLS--------------------- 181

Query: 477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDM 536
                    L+L  N     I         L+ L L +N+L  +    F+  + L  + +
Sbjct: 182 ---------LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231

Query: 537 GEN 539
             N
Sbjct: 232 HTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 6e-13
 Identities = 54/236 (22%), Positives = 86/236 (36%), Gaps = 41/236 (17%)

Query: 76  LDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQL-GNLSNLMHLDLSGSYYEL 134
           LDLS N  + +       S   L+ L+LS       I      +LS+L  L L+G+    
Sbjct: 33  LDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN---- 86

Query: 135 RVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASAN 194
                        ++ L                 + L SL+ L      L         +
Sbjct: 87  ------------PIQSLALG------------AFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 195 FSSLNALDLSGNLFGKTSIPSW-VF-GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRY--- 249
             +L  L+++ NL    S      F  L++L  LDLSSN  +       + L  +     
Sbjct: 123 LKTLKELNVAHNLI--QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 250 -LDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
            LDLS N  N      F     L+ L+L  N+L+ ++     + LT ++ + L  N
Sbjct: 181 SLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 47/253 (18%), Positives = 78/253 (30%), Gaps = 51/253 (20%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
              + L+L  N        S  +   L+ L+L    +  I    +++ S L  L +  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
            + ++        S L+ L      L  +    I HL +L+ L+VA+N +  S       
Sbjct: 88  -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKL---- 141

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
                               F N                     L  +  +D+S N    
Sbjct: 142 -----------------PEYFSN---------------------LTNLEHLDLSSNKIQ- 162

Query: 661 EIPMEV----TNLKGLQ-SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS 715
            I          +  L  SL+LS N  +  I         ++ L L  NQ+         
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221

Query: 716 SLSFLNHLNLSDN 728
            L+ L  + L  N
Sbjct: 222 RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 54/254 (21%), Positives = 87/254 (34%), Gaps = 53/254 (20%)

Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
            L  +   L LS N +      +      L  LDLS   +   I +  + +L+ L+    
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRW 463
            GN                    ++S  L     S L S   L KL    T ++ +    
Sbjct: 84  TGN-------------------PIQS--LALGAFSGLSS---LQKLVAVETNLASLENFP 119

Query: 464 FWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT---LTSLRSLNLRSNRLSGI 520
                              L+ LN+ +N    S          LT+L  L+L SN++  I
Sbjct: 120 I-------GHL------KTLKELNVAHNLIQ-SFK-LPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 521 IPVPFENCSQL----VALDMGENEFVGNIPTWMGERFS--RLRILNLRSNKLHGIFPIQI 574
                    Q+    ++LD+  N  +  I       F   RL+ L L +N+L  +     
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA---FKEIRLKELALDTNQLKSVPDGIF 220

Query: 575 CHLSSLQILDVAYN 588
             L+SLQ + +  N
Sbjct: 221 DRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 25/163 (15%)

Query: 437 PSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGS 496
                S   L  LD+S   I  I    + +                L  L L  N    S
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-------------SHLSTLILTGNPIQ-S 90

Query: 497 IPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555
           + +     L+SL+ L      L+ +   P  +   L  L++  N    +      E FS 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKL--PEYFSN 147

Query: 556 ---LRILNLRSNKLHGIFPIQICHLSSLQI----LDVAYNRLS 591
              L  L+L SNK+  I+   +  L  + +    LD++ N ++
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 44/196 (22%), Positives = 70/196 (35%), Gaps = 38/196 (19%)

Query: 69  DLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQL-GNLSNLMHLDL 127
            L HL+ L L+GN  Q +        + +L+ L       A  + +   G+L  L  L++
Sbjct: 74  SLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNV 131

Query: 128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHF 187
           + +        I     P                       ++L +L+ L L S K+   
Sbjct: 132 AHN-------LIQSFKLPE--------------------YFSNLTNLEHLDLSSNKIQSI 164

Query: 188 APLASANFSSLNA----LDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDG-FK 242
                     +      LDLS N      I    F    L  L L +N  +  +PDG F 
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLKELALDTNQLKS-VPDGIFD 221

Query: 243 NLTSLRYLDLSYNQFN 258
            LTSL+ + L  N ++
Sbjct: 222 RLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 56/190 (29%)

Query: 544 NIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTA 603
           N+P          + L+L  N L  +          LQ+LD++   +             
Sbjct: 25  NLPF-------STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------------ 65

Query: 604 MATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIP 663
                       I   ++++                     L+ + ++ ++ N     + 
Sbjct: 66  -----------TIEDGAYQS---------------------LSHLSTLILTGNPIQ-SLA 92

Query: 664 MEV-TNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQI-SGKIPQSMSSLSFL 720
           +   + L  LQ L     + +  +    IG++++++ L+++ N I S K+P+  S+L+ L
Sbjct: 93  LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 721 NHLNLSDNKL 730
            HL+LS NK+
Sbjct: 152 EHLDLSSNKI 161

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 36/210 (17%), Positives = 75/210 (35%), Gaps = 16/210 (7%)

Query: 196 SSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLS 253
            S   L L        +IPS  F  L ++  + +S ++    +    F NL+ + ++++ 
Sbjct: 31  PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 254 YNQFNSTIS-DCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISE 312
             +  + I  D       L++L +    L+       + +      L+++ N     ++ 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY---MTS 145

Query: 313 ILDIISACAAFELESLFLRGCKISGQLTNQLGLFK--NLHTLALSDNSVSGPLPPA--SG 368
           I          E  +L L     +   + Q   F    L  + L+ N     +      G
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFT---SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

Query: 369 ELSSLTYLDLSNNNLNGMISEIHFGNLTEL 398
             S  + LD+S  ++   +      +L EL
Sbjct: 203 VYSGPSLLDVSQTSVT-ALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 47/223 (21%), Positives = 80/223 (35%), Gaps = 28/223 (12%)

Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLS 229
            PS + LKL    L      A +N  +++ + +S ++     + S  F  LS +  +++ 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-TLQQLESHSFYNLSKVTHIEIR 88

Query: 230 SNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDC--FSNFDDLEYLSLGYNRLQGTIS 286
           +      I     K L  L++L +          D     + D    L +  N    +I 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 287 S---IGLENLTFIKTLDLSFNELGQDISEILDIISACAAF---ELESLFLRGCKISGQLT 340
                GL N T   TL L  N      + +        AF   +L++++L   K    + 
Sbjct: 148 VNAFQGLCNET--LTLKLYNNG----FTSVQG-----YAFNGTKLDAVYLNKNKYLTVID 196

Query: 341 NQL--GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNN 381
                G++     L +S  SV+  LP     L  L  L   N 
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTA-LPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 37/251 (14%), Positives = 80/251 (31%), Gaps = 33/251 (13%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
                 +        IP       S ++L L    L  I    F N   +  + +  +  
Sbjct: 12  QEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67

Query: 542 VGNIPTWMGERFSRLRILNLRSNK-LHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI-- 598
           +  + +      S++  + +R+ + L  I P  +  L  L+ L +    L    P     
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKV 126

Query: 599 --NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMN 656
              +   +  I  +  + +I   +F+                     + N   ++ +  N
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQG--------------------LCNETLTLKLYNN 166

Query: 657 NFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETI--GNMRSIESLDLSGNQISGKIPQSM 714
            F+  +     N   L ++ L+ N ++  I +    G       LD+S   ++    + +
Sbjct: 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225

Query: 715 SSLSFLNHLNL 725
             L  L   N 
Sbjct: 226 EHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 47/240 (19%)

Query: 76  LDLSGNDFQGI-QIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYEL 134
             ++  D Q I  +P       + + L L          H   NL N+  + +S      
Sbjct: 16  FRVTCKDIQRIPSLPP------STQTLKLIETHLRTIPSHAFSNLPNISRIYVSID---- 65

Query: 135 RVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCK-LHHFAPLASA 193
                        L+ L++                +L  +  +++ + + L +  P A  
Sbjct: 66  -----------VTLQQLESH------------SFYNLSKVTHIEIRNTRNLTYIDPDALK 102

Query: 194 NFSSLNALDLSGNLFGKTSIP--SWVFGLSDLVFLDLSSNIFRGPIPDG-FKNLTS-LRY 249
               L  L +          P  + V+       L+++ N +   IP   F+ L +    
Sbjct: 103 ELPLLKFLGIFNTGL--KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160

Query: 250 LDLSYNQFNSTISDCFSNFDD--LEYLSLGYNRLQGTISSIGLENL-TFIKTLDLSFNEL 306
           L L  N F +++      F+   L+ + L  N+    I       + +    LD+S   +
Sbjct: 161 LKLYNNGF-TSVQG--YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 59/241 (24%)

Query: 66  ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL 125
           A  +L +++ + +S +                L+ L            H   NLS + H+
Sbjct: 50  AFSNLPNISRIYVSID--------------VTLQQLE----------SHSFYNLSKVTHI 85

Query: 126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLH 185
           ++  +                 L ++D               +  LP LK L +F+  L 
Sbjct: 86  EIRNT---------------RNLTYIDPD------------ALKELPLLKFLGIFNTGLK 118

Query: 186 HFAPLAS-ANFSSLNALDLSGNLFGKTSIPSWVF-GL-SDLVFLDLSSNIFRGPIPDGFK 242
            F  L    +      L+++ N +  TSIP   F GL ++ + L L +N F   +     
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPY-MTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAF 176

Query: 243 NLTSLRYLDLSYNQFNSTIS-DCFSN-FDDLEYLSLGYNRLQGTISSIGLENLTFIKTLD 300
           N T L  + L+ N++ + I  D F   +     L +    +   + S GLE+L  +   +
Sbjct: 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARN 235

Query: 301 L 301
            
Sbjct: 236 T 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 35/274 (12%), Positives = 76/274 (27%), Gaps = 69/274 (25%)

Query: 244 LTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSF 303
             S + L L      +  S  FSN  ++  + +  +     + S    NL+ +  +++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 304 NELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSG-P 362
               ++++ I        A +                    L   L  L + +  +   P
Sbjct: 90  T---RNLTYIDP-----DALK-------------------EL-PLLKFLGIFNTGLKMFP 121

Query: 363 LPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQL 422
                        L++++N     I    F  L                           
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-----------------------T 158

Query: 423 LALRLRSCHLGPHFPSWLHSQKHLSKLDIS-NTRISDIIPRWFWNSIYQDTIPDCWMNWP 481
           L L+L +         +  +   L  + ++ N  ++ I    F                 
Sbjct: 159 LTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY------------S 205

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSN 515
              +L++     T ++P     L  L+ L  R+ 
Sbjct: 206 GPSLLDVSQTSVT-ALP--SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 39/240 (16%), Positives = 79/240 (32%), Gaps = 39/240 (16%)

Query: 348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS 407
           +  TL L +  +      A   L +++ + +S +     +    F NL+++         
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 408 VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNS 467
                              L         P  L     L  L I NT +          S
Sbjct: 92  ------------------NLTYID-----PDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 468 IYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM--GTLTSLRSLNLRSNRLSGIIPVPF 525
                            +L + +N +  SIP++   G      +L L +N  + +    F
Sbjct: 129 T------------DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176

Query: 526 ENCSQLVALDMGENEFVGNIPTWM-GERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584
            N ++L A+ + +N+++  I     G  +S   +L++    +  +    + HL  L   +
Sbjct: 177 -NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 14/98 (14%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 645 LNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIP-ETIGNMRSIESLDLS 702
           L  +  I +S++    ++      NL  +  + + +   +  I  + +  +  ++ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 703 GNQISGKIPQ--SMSSLSFLNHLNLSDNKLVGKIPSST 738
              +    P    + S      L ++DN  +  IP + 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 94/511 (18%), Positives = 154/511 (30%), Gaps = 114/511 (22%)

Query: 71  KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLS--GAGFAGW--IPHQLGNLSNLMHLD 126
             +  LD+   +    +  E +  +   + + L   G   A    I   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 127 LSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL-- 184
           L  +       ++  +    +L+ L T                    ++ L L +C L  
Sbjct: 63  LRSN-------ELGDVGVHCVLQGLQTPS----------------CKIQKLSLQNCCLTG 99

Query: 185 ---HHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSD----LVFLDLSSNIFR--- 234
                 +        +L  L LS NL G   +     GL D    L  L L         
Sbjct: 100 AGCGVLSSTLRTL-PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158

Query: 235 -GPIPDGFKNLTSLRYLDLSYNQFNST----ISDCF-SNFDDLEYLSLGYNRL--QGTIS 286
             P+    +     + L +S N  N      +      +   LE L L    +       
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 287 -SIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGL 345
               + +   ++ L L  N+LG      L       +  L +L++  C I+ +    L  
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278

Query: 346 FKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL--NGMISEIHFGNLTELAFFYA 403
                   L                 SL  L L+ N L   G            L     
Sbjct: 279 -------VLRAKE-------------SLKELSLAGNELGDEGARL---------LCETLL 309

Query: 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGP----HFPSWLHSQKHLSKLDISNTRISDI 459
                            QL +L ++SC        HF S L   + L +L ISN R+ D 
Sbjct: 310 EPGC-------------QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

Query: 460 IPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT----GSIPISMGTLTSLRSLNLRSN 515
             R     + Q   P        LRVL L +   +     S+  ++    SLR L+L +N
Sbjct: 357 GVRELCQGLGQ---PGS-----VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408

Query: 516 RLS-----GIIPVPFENCSQLVALDMGENEF 541
            L       ++    +    L  L + +  +
Sbjct: 409 CLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.5 bits (202), Expect = 2e-16
 Identities = 83/480 (17%), Positives = 153/480 (31%), Gaps = 109/480 (22%)

Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLH--HFAPLASA--NFSSLNALDL 203
           ++ LD    + +  + W  ++  L   +V++L  C L       ++SA     +L  L+L
Sbjct: 5   IQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 204 SGNLFGKTSIPSWVFGLSD----LVFLDLSSNIFR----GPIPDGFKNLTSLRYLDLSYN 255
             N  G   +   + GL      +  L L +        G +    + L +L+ L LS N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 256 QFNST----ISDCF-SNFDDLEYLSLGYNRL--QGTIS-SIGLENLTFIKTLDLSFNELG 307
                    + +        LE L L Y  L        +  L      K L +S N++ 
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 308 ----QDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL 363
               + + + L      +  +LE+L L  C ++      L          ++  +     
Sbjct: 184 EAGVRVLCQGL----KDSPCQLEALKLESCGVTSDNCRDLCG-------IVASKA----- 227

Query: 364 PPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLL 423
                   SL  L L +N        +    + EL     + +S             +L 
Sbjct: 228 --------SLRELALGSNK-------LGDVGMAELCPGLLHPSS-------------RLR 259

Query: 424 ALRLRSCHLGP----HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMN 479
            L +  C +           L +++ L +L ++   + D   R    ++ +   P C   
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE---PGC--- 313

Query: 480 WPDLRVLNLGNNKFTG----SIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALD 535
              L  L + +  FT          +     L  L + +NRL            +L    
Sbjct: 314 --QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED------AGVRELCQGL 365

Query: 536 MGENEFVGNIPTWMGERFSRLRILNLRSNKL--HGIFPI--QICHLSSLQILDVAYNRLS 591
                             S LR+L L    +       +   +    SL+ LD++ N L 
Sbjct: 366 GQPG--------------SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.4 bits (186), Expect = 2e-14
 Identities = 90/555 (16%), Positives = 159/555 (28%), Gaps = 140/555 (25%)

Query: 196 SSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFR----GPIPDGFKNLTSLRYLD 251
             + +LD+             +  L     + L            I    +   +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 252 LSYNQFN----STISDCFSNFD-DLEYLSLGYNRLQGT-ISSIG--LENLTFIKTLDLSF 303
           L  N+        +          ++ LSL    L G     +   L  L  ++ L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 304 NELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL 363
           N LG    ++L          LE L L  C +S      L          L         
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-------VLRAKP----- 170

Query: 364 PPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLL 423
                       L +SNN++N          +  L     +              P QL 
Sbjct: 171 --------DFKELTVSNNDINEA-------GVRVLCQGLKD-------------SPCQLE 202

Query: 424 ALRLRSCHLGP----HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMN 479
           AL+L SC +           + S+  L +L + + ++ D+        +     P     
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH---PSSR-- 257

Query: 480 WPDLRVLNLGNNKFT----GSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALD 535
              LR L +     T    G +   +    SL+ L+L  N L                  
Sbjct: 258 ---LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG----------------- 297

Query: 536 MGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQIC----HLSSLQILDVAYNRLS 591
              +E    +   + E   +L  L ++S                    L  L ++ NRL 
Sbjct: 298 ---DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

Query: 592 GSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSI 651
                                           D  V E+   +     +  S+L   R +
Sbjct: 355 --------------------------------DAGVRELCQGLG----QPGSVL---RVL 375

Query: 652 DISMNNFSGE----IPMEVTNLKGLQSLNLSHNSF----IGKIPETIGNMRS-IESLDLS 702
            ++  + S      +   +     L+ L+LS+N      I ++ E++      +E L L 
Sbjct: 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 435

Query: 703 GNQISGKIPQSMSSL 717
               S ++   + +L
Sbjct: 436 DIYWSEEMEDRLQAL 450

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 89/531 (16%), Positives = 147/531 (27%), Gaps = 139/531 (26%)

Query: 245 TSLRYLDLSYNQFN-STISDCFSNFDDLEYLSLGYNRLQGT----ISSIGLENLTFIKTL 299
             ++ LD+   + + +  ++        + + L    L       ISS  L     +  L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAEL 61

Query: 300 DLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSV 359
           +L  NELG      +       + +++ L L+ C ++G     L          L     
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-------TLRTLP- 113

Query: 360 SGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPP 419
                       +L  L LS+N L           L  L     +               
Sbjct: 114 ------------TLQELHLSDNLLGD-------AGLQLLCEGLLDPQC------------ 142

Query: 420 FQLLALRLRSCHLGP----HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPD 475
            +L  L+L  C L         S L ++    +L +SN  I++   R     +       
Sbjct: 143 -RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD----- 196

Query: 476 CWMNWPDLRVLNLGNNKFT--GSIPISMG--TLTSLRSLNLRSNRLSG-----IIPVPFE 526
              +   L  L L +   T      +     +  SLR L L SN+L       + P    
Sbjct: 197 ---SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253

Query: 527 NCSQLVALDMGENEFVGNIPTWMG--------ERFSRLRILNLRSNKLHGIFPIQIC--- 575
             S+L  L + E        T  G             L+ L+L  N+L       +C   
Sbjct: 254 PSSRLRTLWIWECGI-----TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308

Query: 576 --HLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLV 633
                 L+ L V     +             +   S                        
Sbjct: 309 LEPGCQLESLWVKSCSFTA---------ACCSHFSS------------------------ 335

Query: 634 MKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-----TNLKGLQSLNLSHNSF----IG 684
               ++  N  L     + IS N        E+          L+ L L+          
Sbjct: 336 ----VLAQNRFL---LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 388

Query: 685 KIPETIGNMRSIESLDLSGNQISGKIPQSMSSL-----SFLNHLNLSDNKL 730
            +  T+    S+  LDLS N +       +          L  L L D   
Sbjct: 389 SLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 81/414 (19%), Positives = 130/414 (31%), Gaps = 71/414 (17%)

Query: 29  IGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVD-LKHLNL----LDLSGNDF 83
           + +  C +    +  N    + ELNL  +ELG      ++  L+  +     L L     
Sbjct: 40  LTEARCKDISSALRVNPA--LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

Query: 84  --QGIQ-IPEYIGSMDNLRYLNLSG-----AGFAGWIPHQLGNLSNLMHLDLSGSYYELR 135
              G   +   + ++  L+ L+LS      AG        L     L  L L      L 
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS--LS 155

Query: 136 VEDISWLA----GPSLLEHLDTSDVDLIKASDWLLV---INSLPSLKVLKLFSCKL---- 184
                 LA         + L  S+ D+ +A   +L     +S   L+ LKL SC +    
Sbjct: 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215

Query: 185 -HHFAPLASANFSSLNALDLSGNLFGKTSI----PSWVFGLSDLVFLDLSSNIFRGP--- 236
                 + ++  +SL  L L  N  G   +    P  +   S L  L +           
Sbjct: 216 CRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274

Query: 237 -IPDGFKNLTSLRYLDLSYNQFNST----ISDCFSNFD-DLEYLSLGYNRL--QGTIS-S 287
            +    +   SL+ L L+ N+        + +        LE L +             S
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334

Query: 288 IGLENLTFIKTLDLSFNELGQDISEILDIISACAAFE-----LESLFLRGCKISGQ---- 338
             L    F+  L +S N L       L     C         L  L+L  C +S      
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVREL-----CQGLGQPGSVLRVLWLADCDVSDSSCSS 389

Query: 339 LTNQLGLFKNLHTLALSDNSVSGPLPPASGELS--------SLTYLDLSNNNLN 384
           L   L    +L  L LS+N +         +L          L  L L +   +
Sbjct: 390 LAATLLANHSLRELDLSNNCLG---DAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 41/275 (14%), Positives = 91/275 (33%), Gaps = 58/275 (21%)

Query: 478 MNWPDLRVLNLGNNKFT-GSIPISMGTLTSLRSLNLRSNRLS----GIIPVPFENCSQLV 532
           M+  D++ L++   + +       +  L   + + L    L+      I         L 
Sbjct: 1   MS-LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 533 ALDMGENEF----VGNIPTWMGERFSRLRILNLRSNKL--HGIFPIQ--ICHLSSLQILD 584
            L++  NE     V  +   +     +++ L+L++  L   G   +   +  L +LQ L 
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 585 VAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSI 644
           ++ N L  +                   ++ +     +    +E++ L       EY S+
Sbjct: 120 LSDNLLGDAG------------------LQLLCEGLLDPQCRLEKLQL-------EYCSL 154

Query: 645 LNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIG-----NMRSIESL 699
                    S    +  +          + L +S+N         +      +   +E+L
Sbjct: 155 S------AASCEPLASVL----RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204

Query: 700 DLSGNQISGK----IPQSMSSLSFLNHLNLSDNKL 730
            L    ++      +   ++S + L  L L  NKL
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.2 bits (218), Expect = 3e-18
 Identities = 53/287 (18%), Positives = 89/287 (31%), Gaps = 68/287 (23%)

Query: 240 GFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTFIKT 298
                      +L        +    +  + ++ +    +     I S+ G++ L  +  
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSD----IKSVQGIQYLPNVTK 69

Query: 299 LDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNS 358
           L L+ N+L  DI  + ++ +      L  LFL   KI   L++   L K L +L+L  N 
Sbjct: 70  LFLNGNKL-TDIKPLTNLKN------LGWLFLDENKIK-DLSSLKDL-KKLKSLSLEHNG 120

Query: 359 VS--GPLPPASGELSSLTYLDLSNNNLNGMISEIH-FGNLTELAFFYANGNSVNFKINSK 415
           +S    L      L  L  L L NN     I++I     LT+L       N    +I+  
Sbjct: 121 ISDINGLV----HLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDN----QISD- 167

Query: 416 WVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPD 475
            + P   L                      L  L +S   ISD+                
Sbjct: 168 -IVPLAGL--------------------TKLQNLYLSKNHISDLRA-------------- 192

Query: 476 CWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIP 522
                 +L VL L + +           L    ++      L     
Sbjct: 193 -LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 5e-18
 Identities = 54/334 (16%), Positives = 93/334 (27%), Gaps = 65/334 (19%)

Query: 67  LVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPH--QLGNLSNLMH 124
                     +L                ++++  +  + +     I     +  L N+  
Sbjct: 17  DDAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSD----IKSVQGIQYLPNVTK 69

Query: 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL 184
           L L+G+    ++ DI  L     L  L   +  +   S     +  L  LK L L    +
Sbjct: 70  LFLNGN----KLTDIKPLTNLKNLGWLFLDENKIKDLSS----LKDLKKLKSLSLEHNGI 121

Query: 185 HHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNL 244
                L   +   L +L L  N             ++D+                    L
Sbjct: 122 SDINGL--VHLPQLESLYLGNN------------KITDI---------------TVLSRL 152

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTFIKTLDLSF 303
           T L  L L  NQ  S I    +    L+ L L  N     IS +  L  L  +  L+L  
Sbjct: 153 TKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFS 206

Query: 304 NELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL 363
            E           +         ++        G L     +  +         +V   L
Sbjct: 207 QECLNKPINHQSNLV-----VPNTVKN----TDGSLVTPEIISDDGD---YEKPNVKWHL 254

Query: 364 PPASGELSSLTYLDLSNNNLNGMISEIHFGNLTE 397
           P  + E+S + Y  ++               L E
Sbjct: 255 PEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKE 288

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.9 bits (212), Expect = 1e-17
 Identities = 48/292 (16%), Positives = 98/292 (33%), Gaps = 58/292 (19%)

Query: 219 GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY 278
             ++ +  +L        +      L S+  +  + +   S          ++  L L  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 74

Query: 279 NRLQGTISSI-GLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISG 337
           N+    ++ I  L NL  +  L L  N++ +D+S + D+        L+SL L    IS 
Sbjct: 75  NK----LTDIKPLTNLKNLGWLFLDENKI-KDLSSLKDLKK------LKSLSLEHNGIS- 122

Query: 338 QLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTE 397
            +   L     L +L L +N ++     +   L+ L  L L +N ++ ++       L  
Sbjct: 123 DING-LVHLPQLESLYLGNNKITDITVLSR--LTKLDTLSLEDNQISDIVPLAGLTKLQN 179

Query: 398 LAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRIS 457
           L   Y + N     I+   +     L                    K+L  L++ +    
Sbjct: 180 L---YLSKN----HISD--LRALAGL--------------------KNLDVLELFSQECL 210

Query: 458 DI---------IPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPIS 500
           +          +P    N+      P+   +  D    N+  +    +  +S
Sbjct: 211 NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 262

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.7 bits (201), Expect = 4e-16
 Identities = 48/294 (16%), Positives = 96/294 (32%), Gaps = 70/294 (23%)

Query: 446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLT 505
           + +    +T I  I P             D    + +    NL     T ++  +   L 
Sbjct: 1   MGETITVSTPIKQIFP-------------DD--AFAETIKDNLKKKSVTDAVTQNE--LN 43

Query: 506 SLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMG-ERFSRLRILNLRSN 564
           S+  +   ++ +  +     +    +  L +  N     +           L  L L  N
Sbjct: 44  SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDEN 97

Query: 565 KLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFEND 624
           K+  +  ++   L  L+ L + +N +S      IN    +  +                 
Sbjct: 98  KIKDLSSLK--DLKKLKSLSLEHNGIS-----DINGLVHLPQL----------------- 133

Query: 625 YIVEEISLVMKGFMVEYNSI--------LNLVRSIDISMNNFSGEIPMEVTNLKGLQSLN 676
              E + L         N I        L  + ++ +  N  S +I   +  L  LQ+L 
Sbjct: 134 ---ESLYL-------GNNKITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLY 181

Query: 677 LSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKL 730
           LS N  I  +   +  +++++ L+L   +   K     S+L   N +  +D  L
Sbjct: 182 LSKNH-ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.9 bits (199), Expect = 6e-16
 Identities = 54/323 (16%), Positives = 98/323 (30%), Gaps = 91/323 (28%)

Query: 258 NSTISDCF--SNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILD 315
           ++ I   F    F +    +L    +   ++      L  I  +  + +++ + +  I  
Sbjct: 8   STPIKQIFPDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDI-KSVQGIQY 63

Query: 316 IISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS--GPLPPASGELSSL 373
           + +      +  LFL G K++  +   L   KNL  L L +N +     L     +L  L
Sbjct: 64  LPN------VTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKDLSSL----KDLKKL 111

Query: 374 TYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLG 433
             L L +N     IS+I                                           
Sbjct: 112 KSLSLEHNG----ISDI------------------------------------------- 124

Query: 434 PHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKF 493
               + L     L  L + N +I+DI                       L  L+L +N+ 
Sbjct: 125 ----NGLVHLPQLESLYLGNNKITDITVL---------------SRLTKLDTLSLEDNQI 165

Query: 494 TGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERF 553
           +  +P++   LT L++L L  N +S +          L  L++   E + N P       
Sbjct: 166 SDIVPLA--GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL-NKPINHQSNL 220

Query: 554 SRLRILNLRSNKLHGIFPIQICH 576
                +      L     I    
Sbjct: 221 VVPNTVKNTDGSLVTPEIISDDG 243

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.5 bits (172), Expect = 1e-12
 Identities = 45/232 (19%), Positives = 88/232 (37%), Gaps = 22/232 (9%)

Query: 48  HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAG 107
            + ++    S++   +   +  L ++  L L+GN    I   + + ++ NL +L L    
Sbjct: 44  SIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDI---KPLTNLKNLGWLFLDENK 98

Query: 108 FAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLV 167
                   L +L  L  L L  +     + DI+ L     LE L   +  +   +     
Sbjct: 99  IKDLSS--LKDLKKLKSLSLEHN----GISDINGLVHLPQLESLYLGNNKITDITV---- 148

Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD 227
           ++ L  L  L L   ++    PLA    + L  L LS N    + + + + GL +L  L+
Sbjct: 149 LSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI--SDLRA-LAGLKNLDVLE 203

Query: 228 LSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
           L S        +   NL     +  +     +   +  S+  D E  ++ ++
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.4 bits (164), Expect = 9e-12
 Identities = 45/285 (15%), Positives = 90/285 (31%), Gaps = 74/285 (25%)

Query: 444 KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT 503
             + ++  +N+ I  +             I       P++  L L  NK T   P++   
Sbjct: 43  NSIDQIIANNSDIKSVQG-----------IQYL----PNVTKLFLNGNKLTDIKPLT--N 85

Query: 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563
           L +L  L L  N++  +     ++  +L +L +  N  + +I         +L  L L +
Sbjct: 86  LKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGN 140

Query: 564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFEN 623
           NK+  I  +    L+ L  L +  N++S      I     +  +                
Sbjct: 141 NKITDITVLS--RLTKLDTLSLEDNQISD-----IVPLAGLTKL---------------- 177

Query: 624 DYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFI 683
               + + L         N I       D+            +  LK L  L L     +
Sbjct: 178 ----QNLYL-------SKNHI------SDLR----------ALAGLKNLDVLELFSQECL 210

Query: 684 GKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDN 728
            K      N+    ++  +   +    P+ +S        N+  +
Sbjct: 211 NKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWH 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 59/311 (18%), Positives = 115/311 (36%), Gaps = 41/311 (13%)

Query: 80  GNDFQGIQIPEYIG--SMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVE 137
           G+  Q   I       ++ N   +    +     +     +L  +  L   G+     V 
Sbjct: 1   GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT----GVT 54

Query: 138 DISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSS 197
            I  +   + L  L+  D  +   +     + +L  +  L+L    L + + +A     S
Sbjct: 55  TIEGVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNVSAIA--GLQS 108

Query: 198 LNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPD--GFKNLTSLRYLDLSYN 255
           +  LDL+     + +  + + GLS+L  L L  N     I +      LT+L+YL +   
Sbjct: 109 IKTLDLTST---QITDVTPLAGLSNLQVLYLDLN----QITNISPLAGLTNLQYLSIGNA 161

Query: 256 QFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTFIKTLDLSFNELGQDISEIL 314
           Q  S ++   +N   L  L    N+    IS I  L +L  +  + L  N++  D+S + 
Sbjct: 162 QV-SDLTP-LANLSKLTTLKADDNK----ISDISPLASLPNLIEVHLKNNQI-SDVSPLA 214

Query: 315 DIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS-GELSSL 373
           +  +      L  + L    I+      +    NL    +       P+ PA+  +  + 
Sbjct: 215 NTSN------LFIVTLTNQTIT---NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTY 265

Query: 374 TYLDLSNNNLN 384
              +L+ N  +
Sbjct: 266 ASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 64/355 (18%), Positives = 123/355 (34%), Gaps = 70/355 (19%)

Query: 258 NSTISDCF--SNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILD 315
            + I+  F      +   ++ G + +  T++     +L  I TL      +   I  +  
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGV-TTIEGVQY 61

Query: 316 IISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTY 375
           + +      L  L L+  +I+  L   L     +  L LS N +      A   L S+  
Sbjct: 62  LNN------LIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSAIAG--LQSIKT 111

Query: 376 LDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPH 435
           LDL++  +  +        L+ L   Y + N    +I +  + P   L            
Sbjct: 112 LDLTSTQITDVTP---LAGLSNLQVLYLDLN----QITN--ISPLAGL------------ 150

Query: 436 FPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTG 495
                    +L  L I N ++SD+ P                 N   L  L   +NK + 
Sbjct: 151 --------TNLQYLSIGNAQVSDLTPLA---------------NLSKLTTLKADDNKISD 187

Query: 496 SIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555
             P++  +L +L  ++L++N++S +   P  N S L  + +        I        + 
Sbjct: 188 ISPLA--SLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ----TITNQPVFYNNN 239

Query: 556 LRILN-LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGS 609
           L + N ++      I P  I    +    ++ +N L+  +      F    T  +
Sbjct: 240 LVVPNVVKGPSGAPIAPATISDNGTYASPNLTWN-LTSFINNVSYTFNQSVTFKN 293

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 39/289 (13%), Positives = 106/289 (36%), Gaps = 48/289 (16%)

Query: 452 SNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLN 511
             T I+ I P                    +   +  G +  T ++  +   L  + +L+
Sbjct: 5   QPTAINVIFP---------------DPALANAIKIAAGKSNVTDTVTQAD--LDGITTLS 47

Query: 512 LRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFP 571
                ++ I     +  + L+ L++ +N+ + ++     +  +++  L L  N L  +  
Sbjct: 48  AFGTGVTTIEG--VQYLNNLIGLELKDNQ-ITDLAPL--KNLTKITELELSGNPLKNVSA 102

Query: 572 IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIG-SHHQVKAIYHASFENDYIVEEI 630
           I    L S++ LD+   +++   P  +   + +  +    +Q+  I  +       ++ +
Sbjct: 103 IA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYL 156

Query: 631 SLVMKGFMVEYNSI--------LNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSF 682
           S+           +        L+ + ++    N  S +I   + +L  L  ++L +N  
Sbjct: 157 SI-------GNAQVSDLTPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQ- 206

Query: 683 IGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLV 731
           I  +   + N  ++  + L+   I+ +     ++L   N +       +
Sbjct: 207 ISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 45/247 (18%), Positives = 88/247 (35%), Gaps = 48/247 (19%)

Query: 65  PALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH 124
             +  L +L  L+L  N    +     + ++  +  L LSG          +  L ++  
Sbjct: 57  EGVQYLNNLIGLELKDNQITDL---APLKNLTKITELELSGNPLKNVSA--IAGLQSIKT 111

Query: 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL 184
           LDL+ +    ++ D++ LAG S L+ L      +   S     +  L +L+ L + + ++
Sbjct: 112 LDLTST----QITDVTPLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQV 163

Query: 185 HHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNL 244
               PL  AN S L  L    N             +SD+                   +L
Sbjct: 164 SDLTPL--ANLSKLTTLKADDN------------KISDI---------------SPLASL 194

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
            +L  + L  NQ +       +N  +L  ++L        I++  +     +   ++   
Sbjct: 195 PNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQT----ITNQPVFYNNNLVVPNVVKG 248

Query: 305 ELGQDIS 311
             G  I+
Sbjct: 249 PSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 20/197 (10%)

Query: 65  PALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH 124
            A+  L+ +  LDL+      +     +  + NL+ L L         P  L  L+NL +
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQY 155

Query: 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL 184
           L +  +    +V D++ LA  S L  L   D  +   S     + SLP+L  + L + ++
Sbjct: 156 LSIGNA----QVSDLTPLANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQI 207

Query: 185 HHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPI-PDGFKN 243
              +PL  AN S+L  + L+      T+ P +    ++LV  ++       PI P    +
Sbjct: 208 SDVSPL--ANTSNLFIVTLTNQTI--TNQPVFYN--NNLVVPNVVKGPSGAPIAPATISD 261

Query: 244 LTSLRYLDLSYNQFNST 260
             +    +L++N  +  
Sbjct: 262 NGTYASPNLTWNLTSFI 278

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 58/272 (21%), Positives = 98/272 (36%), Gaps = 35/272 (12%)

Query: 116 LGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLK 175
               +  +  +L        V D       + ++ +  ++ D+         I  LP++ 
Sbjct: 20  DDAFAETIKDNLKKK----SVTDAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVT 71

Query: 176 VLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRG 235
            L L   KL    PL  AN  +L  L L  N      + S +  L  L  L L  N    
Sbjct: 72  KLFLNGNKLTDIKPL--ANLKNLGWLFLDENKV--KDLSS-LKDLKKLKSLSLEHNGIS- 125

Query: 236 PIPDGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSI-GLEN 292
              +G  +L  L  L L  N+    I+D    S    L+ LSL  N+    IS I  L  
Sbjct: 126 -DINGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQ----ISDIVPLAG 176

Query: 293 LTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTL 352
           LT ++ L LS N +  D+  +  + +      L+ L L   +   +  N        +T+
Sbjct: 177 LTKLQNLYLSKNHI-SDLRALAGLKN------LDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 353 ALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384
             +D S+  P   +  +       ++  +   
Sbjct: 230 KNTDGSLVTPEIIS--DDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 52/285 (18%), Positives = 89/285 (31%), Gaps = 68/285 (23%)

Query: 240 GFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTFIKT 298
                      +L        +    +  + ++ +    +     I S+ G++ L  +  
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSD----IKSVQGIQYLPNVTK 72

Query: 299 LDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNS 358
           L L+ N+L  DI  + ++ +      L  LFL   K+   L++   L K L +L+L  N 
Sbjct: 73  LFLNGNKL-TDIKPLANLKN------LGWLFLDENKVK-DLSSLKDL-KKLKSLSLEHNG 123

Query: 359 VS--GPLPPASGELSSLTYLDLSNNNLNGMISEIH-FGNLTELAFFYANGNSVNFKINSK 415
           +S    L      L  L  L L NN     I++I     LT+L       N    +I+  
Sbjct: 124 ISDINGL----VHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDN----QISD- 170

Query: 416 WVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPD 475
            + P   L                      L  L +S   ISD+                
Sbjct: 171 -IVPLAGL--------------------TKLQNLYLSKNHISDL---------------R 194

Query: 476 CWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGI 520
                 +L VL L + +           L    ++      L   
Sbjct: 195 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 44/253 (17%), Positives = 93/253 (36%), Gaps = 37/253 (14%)

Query: 479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGE 538
            + +    NL     T ++  +   L S+  +   ++ +  +     +    +  L +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNE--LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77

Query: 539 NEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598
           N+ + +I          L  L L  NK+  +  ++   L  L+ L + +N +S      I
Sbjct: 78  NK-LTDIKPL--ANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGIS-----DI 127

Query: 599 NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNF 658
           N    +           +      N+ I +          +   S L  + ++ +  N  
Sbjct: 128 NGLVHL---------PQLESLYLGNNKITD----------ITVLSRLTKLDTLSLEDNQI 168

Query: 659 SGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS 718
           S +I   +  L  LQ+L LS N  I  +   +  +++++ L+L   +   K     S+L 
Sbjct: 169 S-DIV-PLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 719 FLNHLNLSDNKLV 731
             N +  +D  LV
Sbjct: 225 VPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 51/260 (19%), Positives = 102/260 (39%), Gaps = 31/260 (11%)

Query: 48  HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAG 107
             ++ NL++  +   +     +L  ++ +  + +D + +   + I  + N+  L L+G  
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNK 79

Query: 108 FAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLV 167
                P  L NL NL  L L  +    +V+D+S L     L+ L      +   +     
Sbjct: 80  LTDIKP--LANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGISDING---- 129

Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD 227
           +  LP L+ L L + K+     L+    + L+ L L  N    + I   + GL+ L  L 
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI--SDIVP-LAGLTKLQNLY 184

Query: 228 LSSNIFRGPIPD--GFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285
           LS N     I D      L +L  L+L   +  +   +  SN      +        G++
Sbjct: 185 LSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN----TDGSL 236

Query: 286 SSI-GLENLTFIKTLDLSFN 304
            +   + +    +  ++ ++
Sbjct: 237 VTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 52/280 (18%), Positives = 88/280 (31%), Gaps = 66/280 (23%)

Query: 266 SNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFEL 325
             F +    +L    +     ++    L  I  +  + +++ + +  I  + +      +
Sbjct: 21  DAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI-KSVQGIQYLPN------V 70

Query: 326 ESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS--GPLPPASGELSSLTYLDLSNNNL 383
             LFL G K++  +   L   KNL  L L +N V     L     +L  L  L L +N  
Sbjct: 71  TKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSSL----KDLKKLKSLSLEHNG- 123

Query: 384 NGMISEI-HFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHS 442
              IS+I    +L +L   Y   N    KI                         + L  
Sbjct: 124 ---ISDINGLVHLPQLESLYLGNN----KITD----------------------ITVLSR 154

Query: 443 QKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMG 502
              L  L + + +ISDI+P                     L+ L L  N  +    ++  
Sbjct: 155 LTKLDTLSLEDNQISDIVP---------------LAGLTKLQNLYLSKNHISDLRALA-- 197

Query: 503 TLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFV 542
            L +L  L L S            N      +   +   V
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 58/299 (19%), Positives = 104/299 (34%), Gaps = 61/299 (20%)

Query: 304 NELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL 363
           +E     + I  I S  A  E     L+   ++           ++  +  +++ +   +
Sbjct: 5   SETITVPTPIKQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS-V 61

Query: 364 PPASGELSSLTYLDLSNNNLNGMISEI-HFGNLTELAFFYANGNSVNFKINSKWVPPFQL 422
                 L ++T L L+ N     +++I    NL  L + + + N    K+    +   + 
Sbjct: 62  QGIQY-LPNVTKLFLNGNK----LTDIKPLANLKNLGWLFLDEN----KVKD--LSSLKD 110

Query: 423 LALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPD 482
           L                    K L  L + +  ISDI                  ++ P 
Sbjct: 111 L--------------------KKLKSLSLEHNGISDINGL---------------VHLPQ 135

Query: 483 LRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFV 542
           L  L LGNNK T    +S   LT L +L+L  N++S I  VP    ++L  L + +N   
Sbjct: 136 LESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKN--- 188

Query: 543 GNIPTWMG-ERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
            +I           L +L L S +          +L     +      L    P+ I++
Sbjct: 189 -HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISD 244

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 80.8 bits (200), Expect = 5e-17
 Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 36/214 (16%)

Query: 195 FSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDL 252
            +    LDL  N    +S+PS  F  L+ L  L L+ N  +  +P G FK L +L  L +
Sbjct: 36  PADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWV 92

Query: 253 SYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISE 312
           + N+  +     F    +L  L L  N+L+ ++     ++LT +  L L +NEL Q + +
Sbjct: 93  TDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSLPK 150

Query: 313 ILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSS 372
                     F+             +LT+       L  L L +N +      A  +L+ 
Sbjct: 151 --------GVFD-------------KLTS-------LKELRLYNNQLKRVPEGAFDKLTE 182

Query: 373 LTYLDLSNNNLNGMISEIHFGNLTELAFFYANGN 406
           L  L L NN L   + E  F +L +L       N
Sbjct: 183 LKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 61/211 (28%), Positives = 85/211 (40%), Gaps = 35/211 (16%)

Query: 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSN 231
             K L L S KL      A    + L  L L+ N     ++P+ +F  L +L  L ++ N
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDN 95

Query: 232 IFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGL 290
             +  +P G F  L +L  L L  NQ  S     F +   L YLSLGYN LQ ++     
Sbjct: 96  KLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 291 ENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLH 350
           + LT +K L L  N+L + + E         AF+             +LT        L 
Sbjct: 154 DKLTSLKELRLYNNQL-KRVPE--------GAFD-------------KLT-------ELK 184

Query: 351 TLALSDNSVSGPLPPASGELSSLTYLDLSNN 381
           TL L +N +      A   L  L  L L  N
Sbjct: 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 6/140 (4%)

Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVF 225
           +   L +L+ L +   KL            +L  L L  N     S+P  VF  L+ L +
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTY 137

Query: 226 LDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGT 284
           L L  N  +  +P G F  LTSL+ L L  NQ        F    +L+ L L  N+L+  
Sbjct: 138 LSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-R 195

Query: 285 ISSIGLENLTFIKTLDLSFN 304
           +     ++L  +K L L  N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 14/157 (8%)

Query: 483 LRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
           LR+L L +NK   ++P  +   L +L +L +  N+L  +    F+    L  L +  N+ 
Sbjct: 63  LRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 542 VGNIPTWMGERFSRLRILNLRSNKL----HGIFPIQICHLSSLQILDVAYNRLSGSVPKC 597
             ++P  + +  ++L  L+L  N+L     G+F      L+SL+ L +  N+L   VP+ 
Sbjct: 122 K-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD----KLTSLKELRLYNNQLK-RVPEG 175

Query: 598 I-NNFTAMATIGSHH-QVKAIYHASFENDYIVEEISL 632
             +  T + T+   + Q+K +   +F++   ++ + L
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 10/118 (8%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
           D + L+L +NK +     +   LT LR L L  N+L  +    F+    L  L + +N+ 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 542 VGNIPTWMGERFSRLRILNLRSNKL----HGIFPIQICHLSSLQILDVAYNRLSGSVP 595
              +P  + ++   L  L L  N+L      +F      L+ L  L + YN L  S+P
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD----SLTKLTYLSLGYNELQ-SLP 149

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 50/214 (23%), Positives = 73/214 (34%), Gaps = 62/214 (28%)

Query: 70  LKHLNLLDLSGNDFQGIQIPEYI-GSMDNLRYLNLSGAGFAGWIPHQL-GNLSNLMHLDL 127
           L  L LL L+ N  Q   +P  I   + NL  L ++       +P  +   L NL  L L
Sbjct: 60  LTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRL 116

Query: 128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHF 187
             +                                     + SLP     ++F       
Sbjct: 117 DRNQ------------------------------------LKSLPP----RVF------- 129

Query: 188 APLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLT 245
                 + + L  L L  N     S+P  VF  L+ L  L L +N  +  +P+G F  LT
Sbjct: 130 -----DSLTKLTYLSLGYNEL--QSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLT 181

Query: 246 SLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
            L+ L L  NQ        F + + L+ L L  N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 45/224 (20%)

Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
            +  +   L L  N +S     A   L+ L  L L++N L   +    F  L  L   + 
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92

Query: 404 NGNSVNFKINSKWVPP--FQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIP 461
             N    K+ +  +P   F  L                     +L++L +   ++  + P
Sbjct: 93  TDN----KLQA--LPIGVFDQLV--------------------NLAELRLDRNQLKSLPP 126

Query: 462 RWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSNRLSGI 520
           R F              +   L  L+LG N+   S+P  +   LTSL+ L L +N+L  +
Sbjct: 127 RVF-------------DSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRV 172

Query: 521 IPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN 564
               F+  ++L  L +  N+    +P    +   +L++L L+ N
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 43/220 (19%)

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
           +    LDL +N L+  +    F  LT+L   Y N N              +L  L     
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDN--------------KLQTL----- 76

Query: 431 HLGPHFPSWL-HSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLG 489
                 P+ +    K+L  L +++ ++  +    F                 +L  L L 
Sbjct: 77  ------PAGIFKELKNLETLWVTDNKLQALPIGVFDQL-------------VNLAELRLD 117

Query: 490 NNKFTGSIPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTW 548
            N+   S+P  +  +LT L  L+L  N L  +    F+  + L  L +  N+ +  +P  
Sbjct: 118 RNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEG 175

Query: 549 MGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYN 588
             ++ + L+ L L +N+L  +       L  L++L +  N
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 38/225 (16%)

Query: 487 NLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIP 546
           +  + K T +IP         + L+L+SN+LS +    F   ++L  L + +N+    +P
Sbjct: 22  DCSSKKLT-AIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP 77

Query: 547 TWMGERFSRLRILNLRSNKL----HGIFPIQICHLSSLQILDVAYNRLSGSVPKCI-NNF 601
             + +    L  L +  NKL     G+F      L +L  L +  N+L  S+P  + ++ 
Sbjct: 78  AGIFKELKNLETLWVTDNKLQALPIGVFD----QLVNLAELRLDRNQLK-SLPPRVFDSL 132

Query: 602 TAMATIG-SHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
           T +  +   +++++++    F+    ++E+ L                       NN   
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRL----------------------YNNQLK 170

Query: 661 EIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGN 704
            +P      L  L++L L +N           ++  ++ L L  N
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.8 bits (195), Expect = 6e-17
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 14/180 (7%)

Query: 158 LIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWV 217
           L ++S   +    + SL  + L +  +     +      ++  L ++      T+  + +
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHA--TNY-NPI 84

Query: 218 FGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLG 277
            GLS+L  L +               LTSL  LD+S++  + +I    +    +  + L 
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 278 YNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISG 337
           YN     I    L+ L  +K+L++ F+ +  D   I D         L  L+     I G
Sbjct: 145 YNGAITDIM--PLKTLPELKSLNIQFDGV-HDYRGIEDFPK------LNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 35/224 (15%), Positives = 70/224 (31%), Gaps = 45/224 (20%)

Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTF 295
           IPD      +     L  +   + I+   +  + L Y++L        ++ + G+E    
Sbjct: 17  IPD--STFKAYLNGLLGQSS-TANIT--EAQMNSLTYITLANIN----VTDLTGIEYAHN 67

Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
           IK L ++      + + I  + +      LE L + G  ++      L    +L  L +S
Sbjct: 68  IKDLTINNIHA-TNYNPISGLSN------LERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 356 DNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSK 415
            ++    +      L  +  +DLS N     I  +    L EL       + V+      
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVH-DY--- 174

Query: 416 WVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
                                   +     L++L   +  I   
Sbjct: 175 ----------------------RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 31/190 (16%), Positives = 66/190 (34%), Gaps = 14/190 (7%)

Query: 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN 231
            + K            A +  A  +SL  + L+      T +   +    ++  L +++ 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINV--TDLTG-IEYAHNIKDLTINNI 76

Query: 232 IFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLE 291
                 P     L++L  L +      S      S    L  L + ++    +I +  + 
Sbjct: 77  HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT-KIN 133

Query: 292 NLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHT 351
            L  + ++DLS+N    DI  +  +        L+SL ++   +       +  F  L+ 
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPLKTLPE------LKSLNIQFDGVHD-YRG-IEDFPKLNQ 185

Query: 352 LALSDNSVSG 361
           L     ++ G
Sbjct: 186 LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 19/149 (12%)

Query: 444 KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT 503
            ++  L I+N   ++  P                    +L  L +     T     ++  
Sbjct: 66  HNIKDLTINNIHATNYNP---------------ISGLSNLERLRIMGKDVTSDKIPNLSG 110

Query: 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563
           LTSL  L++  +     I        ++ ++D+  N  + +I     +    L+ LN++ 
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQF 168

Query: 564 NKLHGIFPIQICHLSSLQILDVAYNRLSG 592
           + +H    I+      L  L      + G
Sbjct: 169 DGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 20/192 (10%)

Query: 70  LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG 129
            K      L  +    I        M++L Y+ L+           +    N+  L ++ 
Sbjct: 22  FKAYLNGLLGQSSTANI----TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 130 SYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAP 189
                   + + ++G S LE L     D+   SD +  ++ L SL +L +          
Sbjct: 76  I----HATNYNPISGLSNLERLRIMGKDVT--SDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 190 LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPD--GFKNLTSL 247
                   +N++DLS N  G  +    +  L +L  L++  +     + D  G ++   L
Sbjct: 130 TKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNIQFD----GVHDYRGIEDFPKL 183

Query: 248 RYLDLSYNQFNS 259
             L         
Sbjct: 184 NQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 35/259 (13%), Positives = 75/259 (28%), Gaps = 81/259 (31%)

Query: 472 TIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQL 531
            IPD    +       LG +       I+   + SL  + L +  ++ +  +        
Sbjct: 16  NIPD--STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGI-------- 62

Query: 532 VALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS 591
                              E    ++ L + +       PI    LS+L+ L +    ++
Sbjct: 63  -------------------EYAHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGKDVT 101

Query: 592 GSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSI 651
                 ++  T                                           +L   +
Sbjct: 102 SDKIPNLSGLT-------------------------------------------SL-TLL 117

Query: 652 DISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIP 711
           DIS +     I  ++  L  + S++LS+N  I  I   +  +  ++SL++  + +     
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG 176

Query: 712 QSMSSLSFLNHLNLSDNKL 730
             +     LN L      +
Sbjct: 177 --IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 10/140 (7%)

Query: 67  LVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLD 126
           +    ++  L ++            I  + NL  L + G          L  L++L  LD
Sbjct: 62  IEYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 127 LSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH 186
           +S S        ++ +     +  +D S    I     ++ + +LP LK L +    +H 
Sbjct: 119 ISHS--AHDDSILTKINTLPKVNSIDLSYNGAITD---IMPLKTLPELKSLNIQFDGVHD 173

Query: 187 FAPLASANFSSLNALDLSGN 206
           +  +   +F  LN L     
Sbjct: 174 YRGI--EDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 45/271 (16%), Positives = 80/271 (29%), Gaps = 82/271 (30%)

Query: 251 DLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDI 310
            L  +Q N  I D  S F       LG +      ++I    +  +  + L+   +  D+
Sbjct: 7   GLKASQDNVNIPD--STFKAYLNGLLGQSS----TANITEAQMNSLTYITLANINV-TDL 59

Query: 311 SEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGEL 370
           + I        A  ++ L +     +    N +    NL  L +    V+    P    L
Sbjct: 60  TGI------EYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
           +SLT LD+S++       +     +  L                                
Sbjct: 112 TSLTLLDISHSA----HDDSILTKINTL-------------------------------- 135

Query: 431 HLGPHFPSWLHSQKHLSKLDIS-NTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLG 489
                          ++ +D+S N  I+DI+P                   P+L+ LN+ 
Sbjct: 136 -------------PKVNSIDLSYNGAITDIMP---------------LKTLPELKSLNIQ 167

Query: 490 NNKFTGSIPISMGTLTSLRSLNLRSNRLSGI 520
            +       I       L  L   S  + G 
Sbjct: 168 FDGVHDYRGIE--DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISG 708
           + + I+  + +   P  ++ L  L+ L +            +  + S+  LD+S +    
Sbjct: 69  KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 709 KIPQSMSSLSFLNHLNLSDNKLVGKIPS 736
            I   +++L  +N ++LS N  +  I  
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMP 154

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.9 bits (200), Expect = 7e-17
 Identities = 47/214 (21%), Positives = 74/214 (34%), Gaps = 43/214 (20%)

Query: 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSS 230
               +L L    L+ F+      ++ L  L+L       T +   V   L  L  LDLS 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQ--VDGTLPVLGTLDLSH 86

Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGL 290
           N  +  +P   + L +L  LD+S+N+  S          +L+ L L  N L+ T+    L
Sbjct: 87  NQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLL 144

Query: 291 ENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLH 350
                ++ L L+ N L  ++                                 GL   L 
Sbjct: 145 TPTPKLEKLSLANNNL-TELPA-------------------------------GLLNGLE 172

Query: 351 ---TLALSDNSVSGPLPPASGELSSLTYLDLSNN 381
              TL L +NS+   +P        L +  L  N
Sbjct: 173 NLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 41/228 (17%)

Query: 192 SANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD 251
            +  +S   ++        T++P  +    D   L LS N+            T L  L+
Sbjct: 6   VSKVASHLEVNCDKR--NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 252 LSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS 311
           L   +   T          L  L L +N+LQ ++  +  + L  +  LD+SFN L   + 
Sbjct: 62  LDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLL-GQTLPALTVLDVSFNRL-TSLP 116

Query: 312 EILDIISACAAF----ELESLFLRGCKISGQLTNQL-----GLFK---NLHTLALSDNSV 359
                     A     EL+ L+L+G        N+L     GL      L  L+L++N++
Sbjct: 117 L--------GALRGLGELQELYLKG--------NELKTLPPGLLTPTPKLEKLSLANNNL 160

Query: 360 SGPLPPAS-GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGN 406
           +  LP      L +L  L L  N+L   I +  FG+   L F + +GN
Sbjct: 161 TE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL-LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.7 bits (163), Expect = 4e-12
 Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 17/209 (8%)

Query: 73  LNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYY 132
              ++    +     +P  +    +   L+LS      +    L   + L  L+L  +  
Sbjct: 12  HLEVNCDKRNLT--ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-- 65

Query: 133 ELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLAS 192
              +  +       +L  LD S   L        +  +LP+L VL +   +L      A 
Sbjct: 66  --ELTKLQVDGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 193 ANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYL 250
                L  L L GN     ++P  +      L  L L++N     +P G    L +L  L
Sbjct: 121 RGLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTL 177

Query: 251 DLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
            L  N   +     F +   L +  L  N
Sbjct: 178 LLQENSLYTIPKGFFGS-HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 26/155 (16%)

Query: 446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLT 505
            + L +S   +                          L  LNL   + T  + +  GTL 
Sbjct: 33  TTILHLSENLLYTFSLATLMPY-------------TRLTQLNLDRAELT-KLQVD-GTLP 77

Query: 506 SLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNK 565
            L +L+L  N+L  + P+  +    L  LD+  N    ++P         L+ L L+ N+
Sbjct: 78  VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNE 135

Query: 566 L----HGIFPIQICHLSSLQILDVAYNRLSGSVPK 596
           L     G+          L+ L +A N L+  +P 
Sbjct: 136 LKTLPPGLLT----PTPKLEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 45/198 (22%)

Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIH-FGNLTELAFFY 402
            L K+   L LS+N +           + LT L+L    L    +++   G L  L    
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL----TKLQVDGTLPVLGTLD 83

Query: 403 ANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPR 462
            + N                   +L+S       P    +   L+ LD+S  R++ +   
Sbjct: 84  LSHN-------------------QLQS------LPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 463 WFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSNRLSGII 521
                              +L+ L L  N+   ++P  +      L  L+L +N L+ + 
Sbjct: 119 ALRGL-------------GELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELP 164

Query: 522 PVPFENCSQLVALDMGEN 539
                    L  L + EN
Sbjct: 165 AGLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 55/275 (20%), Positives = 76/275 (27%), Gaps = 75/275 (27%)

Query: 241 FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLD 300
              + S   ++       +   D   +      L L  N L  T S   L   T +  L+
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLPKD---TTILHLSENLLY-TFSLATLMPYTRLTQLN 61

Query: 301 LSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS 360
           L   EL           +                  G L         L TL LS N + 
Sbjct: 62  LDRAEL-----------TKLQVD-------------GTLPV-------LGTLDLSHNQLQ 90

Query: 361 GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPF 420
             LP     L +LT LD+S N L   +       L EL   Y  GN              
Sbjct: 91  S-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN-------------- 134

Query: 421 QLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNW 480
           +L  L           P  L     L KL ++N  ++++                     
Sbjct: 135 ELKTLP----------PGLLTPTPKLEKLSLANNNLTELPAGLL-------------NGL 171

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSN 515
            +L  L L  N    +IP        L    L  N
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 40/228 (17%), Positives = 78/228 (34%), Gaps = 32/228 (14%)

Query: 479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGE 538
                  +N      T ++P           L+L  N L           ++L  L++  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 539 NEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598
            E +  +          L  L+L  N+L  + P+    L +L +LDV++NRL+      +
Sbjct: 65  AE-LTKLQV--DGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 599 NNFTAMATIG-SHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNN 657
                +  +    +++K +                               +  + ++ NN
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTP---------------------TPKLEKLSLANNN 159

Query: 658 FSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGN 704
            + E+P  +   L+ L +L L  NS +  IP+       +    L GN
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 63/233 (27%)

Query: 504 LTSLRSLNLRSNRLSGI---IPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN 560
           + S   +N     L+ +   +P           L + EN             ++RL  LN
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKDTTI------LHLSENLL-YTFSLATLMPYTRLTQLN 61

Query: 561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHAS 620
           L   +L  +       L  L  LD+++N+L  S+P       A+                
Sbjct: 62  LDRAELTKLQVDG--TLPVLGTLDLSHNQLQ-SLPLLGQTLPAL---------------- 102

Query: 621 FENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSH 679
                                 ++L++      S N  +  +P+     L  LQ L L  
Sbjct: 103 ----------------------TVLDV------SFNRLT-SLPLGALRGLGELQELYLKG 133

Query: 680 NSFIGKIPETI-GNMRSIESLDLSGNQISGKIPQSM-SSLSFLNHLNLSDNKL 730
           N  +  +P  +      +E L L+ N ++ ++P  + + L  L+ L L +N L
Sbjct: 134 NE-LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 43/181 (23%), Positives = 60/181 (33%), Gaps = 34/181 (18%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
           +LNL+R+EL          L  L  LDLS N  Q   +P    ++  L  L++S      
Sbjct: 59  QLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTS 114

Query: 111 WIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINS 170
                L  L  L  L L G                + L+ L               ++  
Sbjct: 115 LPLGALRGLGELQELYLKG----------------NELKTLPPG------------LLTP 146

Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
            P L+ L L +  L            +L+ L L  N     +IP   FG   L F  L  
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHG 204

Query: 231 N 231
           N
Sbjct: 205 N 205

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 77.6 bits (191), Expect = 2e-15
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLS 229
           L +L  L L    L+  +  A     +L  LDLS N     ++  ++F  L  L  L L 
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLY 120

Query: 230 SN-IFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFD---DLEYLSLGYNRLQGT 284
           +N I    +    F+++  L+ L LS NQ +    +   + +    L  L L  N+L+  
Sbjct: 121 NNHIVV--VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-K 177

Query: 285 ISSIGLENLTFIKTLDLSFNE 305
           +    L+ L       L  + 
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 45/189 (23%), Positives = 66/189 (34%), Gaps = 35/189 (18%)

Query: 201 LDLSGNLFGKTSI-PSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQF 257
           LDLS N    + +   W    L++L  L LS N     I    F  + +LRYLDLS N  
Sbjct: 44  LDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHL 100

Query: 258 NSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDII 317
           ++     FS+   LE L L  N +   +     E++  ++ L LS N++           
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI-SRFPV----- 153

Query: 318 SACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLT--Y 375
                 +                        L  L LS N +         +L +     
Sbjct: 154 ---ELIK-----------------DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 376 LDLSNNNLN 384
           L L NN L 
Sbjct: 194 LYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 55/257 (21%), Positives = 87/257 (33%), Gaps = 42/257 (16%)

Query: 245 TSLRYLDLSYNQFNSTISDC-FSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSF 303
           +    LDLS+N  +   ++   +   +L  L L +N L   ISS     +  ++ LDLS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 304 NELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLH---TLALSDNSVS 360
           N L      +   + A     LE L L    I   +      F+++     L LS N +S
Sbjct: 98  NHLHTLDEFLFSDLQA-----LEVLLLYNNHIV-VVDR--NAFEDMAQLQKLYLSQNQIS 149

Query: 361 GPLPP----ASGELSSLTYLDLSNNNLNGMISEIHFGNLTEL--AFFYANGNSVNFKINS 414
              P        +L  L  LDLS+N L   +       L        Y + N        
Sbjct: 150 R-FPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN-------- 199

Query: 415 KWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIP 474
               P +        C L   F  W    + LS +      +  +  +   N I+     
Sbjct: 200 ----PLEC------DCKLYQLFSHWQ--YRQLSSVMDFQEDLYCMHSKKLHN-IFSLDFF 246

Query: 475 DCWMNWPDLRVLNLGNN 491
           +C          +LG+ 
Sbjct: 247 NCSEYKESAWEAHLGDT 263

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 481 PDLRVLNLGNNKFTGSIPISM--GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGE 538
               +L+L +N  +  +        LT+L SL L  N L+ I    F     L  LD+  
Sbjct: 39  SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 539 NEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP 595
           N  +  +  ++      L +L L +N +  +       ++ LQ L ++ N++S   P
Sbjct: 98  NH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 20/169 (11%)

Query: 445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-GT 503
           + + LD+S+  +S +   W                  +L  L L +N     I       
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPT------------RLTNLHSLLLSHNHLN-FISSEAFVP 86

Query: 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563
           + +LR L+L SN L  +    F +   L  L +  N  +  +     E  ++L+ L L  
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQ 145

Query: 564 NKL----HGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIG 608
           N++      +       L  L +LD++ N+L       +    A    G
Sbjct: 146 NQISRFPVELI-KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 47/219 (21%), Positives = 72/219 (32%), Gaps = 43/219 (19%)

Query: 76  LDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELR 135
           LDLS N+   ++       + NL  L LS              + NL +LDLS +     
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN----- 98

Query: 136 VEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANF 195
                       L  LD              + + L +L+VL L++  +      A  + 
Sbjct: 99  -----------HLHTLDEF------------LFSDLQALEVLLLYNNHIVVVDRNAFEDM 135

Query: 196 SSLNALDLSGNLFGKTSIPSWVF----GLSDLVFLDLSSNIFRGPIPDGFKNLTSL--RY 249
           + L  L LS N    +  P  +      L  L+ LDLSSN  +       + L +     
Sbjct: 136 AQLQKLYLSQNQI--SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 250 LDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI 288
           L L  N       DC       +  S    R   ++   
Sbjct: 194 LYLHNNPLE---CDC----KLYQLFSHWQYRQLSSVMDF 225

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 41/216 (18%), Positives = 69/216 (31%), Gaps = 61/216 (28%)

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
           S    LDLS+NNL+ + +E     LT                         L +L L   
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLT------------------------NLHSLLLSHN 74

Query: 431 HLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN 490
           HL            +L  LD+S+  +  +    F +                L VL L N
Sbjct: 75  HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL-------------QALEVLLLYN 121

Query: 491 NKFTGSIPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWM 549
           N     +  +    +  L+ L L  N++S       ++ ++L                  
Sbjct: 122 NHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL------------------ 162

Query: 550 GERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDV 585
                +L +L+L SNKL  +    +  L +     +
Sbjct: 163 ----PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 35/187 (18%)

Query: 344 GLFKNLHTLALSDNSVSGPLPP--ASGELSSLTYLDLSNNNLNGMISEIH---FGNLTEL 398
            L      L LS N++S  L        L++L  L LS+N+    ++ I    F  +  L
Sbjct: 36  SLPSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNH----LNFISSEAFVPVPNL 90

Query: 399 AFFYANGNSVNFKINSKWVPP--FQ----LLALRLRSCHLGPHFPSWLHSQKHLSKLDIS 452
            +   + N     +++  +    F     L  L L + H+     +       L KL +S
Sbjct: 91  RYLDLSSN----HLHT--LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 453 NTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNL 512
             +IS        +              P L +L+L +NK      + +  L  L +   
Sbjct: 145 QNQISRFPVELIKD----------GNKLPKLMLLDLSSNKLKK---LPLTDLQKLPAWVK 191

Query: 513 RSNRLSG 519
               L  
Sbjct: 192 NGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 39/194 (20%), Positives = 73/194 (37%), Gaps = 61/194 (31%)

Query: 544 NIPTWMGERFSRLRILNLRSNKLHGIFPIQI-CHLSSLQILDVAYNRLSGSVPKCINNFT 602
           ++P++         +L+L  N L  +        L++L  L +++N L+           
Sbjct: 36  SLPSYT-------ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----------- 77

Query: 603 AMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEI 662
                        I   +F                       +  +R +D+S N+    +
Sbjct: 78  ------------FISSEAFVP---------------------VPNLRYLDLSSNHLH-TL 103

Query: 663 PMEV-TNLKGLQSLNLSHNSFIGKIPETI-GNMRSIESLDLSGNQISGKIP----QSMSS 716
              + ++L+ L+ L L +N  I  +      +M  ++ L LS NQIS + P    +  + 
Sbjct: 104 DEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNK 161

Query: 717 LSFLNHLNLSDNKL 730
           L  L  L+LS NKL
Sbjct: 162 LPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 40/233 (17%), Positives = 69/233 (29%), Gaps = 62/233 (26%)

Query: 506 SLRSLNLRSNRLSGI---IPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLR 562
           +   L+    +L  +   +P      S    LD+  N        W   R + L  L L 
Sbjct: 19  ASNILSCSKQQLPNVPQSLP------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS 72

Query: 563 SNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFE 622
            N L+ I       + +L+ LD++ N L                         +    F 
Sbjct: 73  HNHLNFISSEAFVPVPNLRYLDLSSNHL-----------------------HTLDEFLFS 109

Query: 623 NDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNS 681
           +                     L  +  + +  N+    +      ++  LQ L LS N 
Sbjct: 110 D---------------------LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ 147

Query: 682 FIGKIPE----TIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNH--LNLSDN 728
            I + P         +  +  LDLS N++       +  L       L L +N
Sbjct: 148 -ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 54/322 (16%), Positives = 86/322 (26%), Gaps = 76/322 (23%)

Query: 197 SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQ 256
           S        +    T IPS +    + + L       R      F     L  +++S N 
Sbjct: 10  SNRVFLCQESKV--TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 257 FNSTI-SDCFSNFDDLEYLSL-GYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEIL 314
               I +D FSN   L  + +   N L   I+    +NL  ++ L +S   +        
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKH------ 118

Query: 315 DIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLT 374
             +                         L +  N++   +  NS  G L           
Sbjct: 119 --LPDVHKIHSLQKV------------LLDIQDNINIHTIERNSFVG-LS------FESV 157

Query: 375 YLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGP 434
            L L+ N +   I    F          ++ N                    L       
Sbjct: 158 ILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN-------------------NLEELP--- 194

Query: 435 HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT 494
                 H       LDIS TRI  +                   N   LR  +  N K  
Sbjct: 195 --NDVFHGASGPVILDISRTRIHSLPSYGLE-------------NLKKLRARSTYNLK-- 237

Query: 495 GSIPISMGTLTSLRSLNLRSNR 516
             +P ++  L +L   +L    
Sbjct: 238 -KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.1 bits (182), Expect = 3e-14
 Identities = 53/267 (19%), Positives = 85/267 (31%), Gaps = 43/267 (16%)

Query: 169 NSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLD 227
           +   +   L+    KL      A + F  L  +++S N      I + VF  L  L  + 
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIR 85

Query: 228 LS-SNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTIS 286
           +  +N      P+ F+NL +L+YL +S             +      L +  N    TI 
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 287 SIGLENLTF-IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGL 345
                 L+F    L L+ N + Q+I       SA    +L+ L L          N L  
Sbjct: 146 RNSFVGLSFESVILWLNKNGI-QEIHN-----SAFNGTQLDELNLSD-------NNNL-- 190

Query: 346 FKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG 405
            + L                     S    LD+S   ++  +      NL +L       
Sbjct: 191 -EELPNDVFHG-------------ASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN 235

Query: 406 NSVNFKINSKWVPPFQLLALRLRSCHL 432
                    K +P  + L   L    L
Sbjct: 236 L--------KKLPTLEKLV-ALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.9 bits (179), Expect = 7e-14
 Identities = 37/264 (14%), Positives = 75/264 (28%), Gaps = 45/264 (17%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPV-PFENCSQLVALDMGEN 539
            +   L     K       +      L  + +  N +  +I    F N  +L  + + + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 540 EFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCIN 599
             +  I     +    L+ L + +  +  +  +   H     +LD+  N           
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI---------- 139

Query: 600 NFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFS 659
                        +  I   SF                      +      + ++ N   
Sbjct: 140 ------------NIHTIERNSFVG--------------------LSFESVILWLNKNGIQ 167

Query: 660 GEIPMEVTNLKGLQSLNLSHNSFIGKIPETI-GNMRSIESLDLSGNQISGKIPQSMSSLS 718
            EI     N   L  LNLS N+ + ++P  +         LD+S  +I       + +L 
Sbjct: 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226

Query: 719 FLNHLNLSDNKLVGKIPSSTQLQS 742
            L   +  + K +  +     L  
Sbjct: 227 KLRARSTYNLKKLPTLEKLVALME 250

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 39/239 (16%), Positives = 71/239 (29%), Gaps = 55/239 (23%)

Query: 66  ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL 125
           A      L  +++S N      + E I                         NL  L  +
Sbjct: 49  AFSGFGDLEKIEISQN-----DVLEVIE-------------------ADVFSNLPKLHEI 84

Query: 126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLH 185
            +  +               + L +++                 +LP+L+ L + +  + 
Sbjct: 85  RIEKA---------------NNLLYINPE------------AFQNLPNLQYLLISNTGIK 117

Query: 186 HFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLS-DLVFLDLSSNIFRGPIPDGFKN 243
           H   +   +      LD+  N+    +I    F GLS + V L L+ N  +      F  
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176

Query: 244 LTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLS 302
                      N      +D F        L +   R+  ++ S GLENL  ++     
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTY 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 24/245 (9%)

Query: 444 KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-G 502
           ++  +L    T++  I    F               + DL  + +  N     I   +  
Sbjct: 30  RNAIELRFVLTKLRVIQKGAF-------------SGFGDLEKIEISQNDVLEVIEADVFS 76

Query: 503 TLTSLRSLNL-RSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNL 561
            L  L  + + ++N L  I P  F+N   L  L +       ++P        +  +L++
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDI 135

Query: 562 RSN-KLHGIFPIQICHLSS-LQILDVAYNRLSGSVPKCINNFTAMATIGSHH--QVKAIY 617
           + N  +H I       LS    IL +  N +   +     N T +  +       ++ + 
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 618 HASFENDYIVEEISLVMKGF-MVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLN 676
           +  F        + +       +    + NL +    S  N   ++P  +  L  L   +
Sbjct: 195 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK-KLPT-LEKLVALMEAS 252

Query: 677 LSHNS 681
           L++ S
Sbjct: 253 LTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 33/216 (15%), Positives = 52/216 (24%), Gaps = 58/216 (26%)

Query: 66  ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL 125
           A  +L +L  L +S    +   +P+                           +    + L
Sbjct: 99  AFQNLPNLQYLLISNTGIK--HLPDVHKI-----------------------HSLQKVLL 133

Query: 126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLH 185
           D+  +     +E  S++        L                           L    + 
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILW--------------------------LNKNGIQ 167

Query: 186 HFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKNL 244
                A              N      +P+ VF G S  V LD+S          G +NL
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNR 280
             LR       +   T          L   SL Y  
Sbjct: 226 KKLRARSTYNLKKLPT----LEKLVALMEASLTYPS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 76.7 bits (189), Expect = 6e-15
 Identities = 69/352 (19%), Positives = 117/352 (33%), Gaps = 72/352 (20%)

Query: 246 SLRYLDLSYNQFNS----TISDCFSNFDDLEYLSLGYNRL--QGTIS-SIGLENLTFIKT 298
           S+    L  +   +    ++       D ++ + L  N +  +     S  + +   ++ 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 299 LDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNS 358
            + S    G+   EI + +                     L   L     LHT+ LSDN+
Sbjct: 65  AEFSDIFTGRVKDEIPEALRL-------------------LLQALLKCPKLHTVRLSDNA 105

Query: 359 VSG----PLPPASGELSSLTYLDLSNNNLNGMISEIHFGN-LTELAFFYANGNSVNFKIN 413
                  PL     + + L +L L NN L G  +       L ELA       +   K  
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELA------VNKKAKNA 158

Query: 414 SKWVPPFQLLALRLRSCHLGP----HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIY 469
                   L ++      L       +     S + L  + +    I           I 
Sbjct: 159 P------PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP-------EGI- 204

Query: 470 QDTIPDCWMNWPDLRVLNLGNNKFT--GSIPISMG--TLTSLRSLNLRSNRLS--GIIPV 523
           +  + +      +L+VL+L +N FT  GS  +++   +  +LR L L    LS  G   V
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264

Query: 524 -----PFENCSQLVALDMGENEF----VGNIPTWMGERFSRLRILNLRSNKL 566
                  EN   L  L +  NE     V  + T + E+   L  L L  N+ 
Sbjct: 265 VDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.8 bits (179), Expect = 8e-14
 Identities = 50/345 (14%), Positives = 106/345 (30%), Gaps = 75/345 (21%)

Query: 76  LDLSGNDF--QGIQ-IPEYIGSMDNLRYLNLSGAGF----AGWIPHQLGNLSNLMHLDLS 128
             L  +    +  + +   +   D+++ + LSG       A W+   + +  +L   + S
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 129 GSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL---- 184
             +   RV+D    A   LL+                  +   P L  ++L         
Sbjct: 69  DIFTG-RVKDEIPEALRLLLQ-----------------ALLKCPKLHTVRLSDNAFGPTA 110

Query: 185 -HHFAPLASANFSSLNALDLSGNLFG------------KTSIPSWVFGLSDLVFLDLSSN 231
                   S + + L  L L  N  G            + ++         L  +    N
Sbjct: 111 QEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 232 IFRGP----IPDGFKNLTSLRYLDLSYNQFNS-----TISDCFSNFDDLEYLSLGYNRL- 281
                        F++   L  + +  N          + +  +   +L+ L L  N   
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Query: 282 -QGTIS-SIGLENLTFIKTLDLSFNELGQD-ISEILDIISACAAFELESLFLRGCKISGQ 338
             G+ + +I L++   ++ L L+   L     + ++D  S      L++L L+  +I   
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289

Query: 339 LTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
               L          + +             +  L +L+L+ N  
Sbjct: 290 AVRTLKT-------VIDEK------------MPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.8 bits (179), Expect = 9e-14
 Identities = 48/331 (14%), Positives = 94/331 (28%), Gaps = 73/331 (22%)

Query: 290 LENLTFIKTLDLSFNELG-QDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKN 348
           +   + I+   L  + +  +D   +  ++    +  ++ + L G  I  +    L     
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDS--VKEIVLSGNTIGTEAARWLSE--- 54

Query: 349 LHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSV 408
                ++                 L   + S+     +  EI    L  L          
Sbjct: 55  ----NIASKK-------------DLEIAEFSDIFTGRVKDEIPEA-LRLLLQALLKCPK- 95

Query: 409 NFKINSKWVPPFQLLALRLRSCHLGP----HFPSWLHSQKHLSKLDISNTRISDIIPRWF 464
                        L  +RL     GP        +L     L  L + N  +        
Sbjct: 96  -------------LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 142

Query: 465 WNSIYQDTIPDCWMNWPDLRVLNLGNNKFT--GSIPIS--MGTLTSLRSLNLRSNRL--- 517
             ++ +  +     N P LR +  G N+         +    +   L ++ +  N +   
Sbjct: 143 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 202

Query: 518 --SGIIPVPFENCSQLVALDMGENEFVGN---------IPTWMGERFSRLRILNLRSNKL 566
               ++      C +L  LD+ +N F  +         + +W       LR L L    L
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTF-THLGSSALAIALKSW-----PNLRELGLNDCLL 256

Query: 567 --HGIFPI----QICHLSSLQILDVAYNRLS 591
              G   +           LQ L + YN + 
Sbjct: 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 57/349 (16%), Positives = 105/349 (30%), Gaps = 55/349 (15%)

Query: 51  ELNLERSELGGK----INPALVDLKHLNLLDLSGNDF--QGIQ-IPEYIGSMDNLRYLNL 103
             +L+   +  +    +   L++   +  + LSGN    +  + + E I S  +L     
Sbjct: 8   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 67

Query: 104 S----------GAGFAGWIPHQLGNLSNLMHLDLSGSYYELR-VEDI-SWLAGPSLLEHL 151
           S                 +   L     L  + LS + +     E +  +L+  + LEHL
Sbjct: 68  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 127

Query: 152 DTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKT 211
              +             N L      K+            + N   L ++    N     
Sbjct: 128 YLHN-------------NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 212 SIPSWVFGLSD---LVFLDLSSNIFR-----GPIPDGFKNLTSLRYLDLSYNQFNST--- 260
           S+  W         L  + +  N  R       + +G      L+ LDL  N F      
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234

Query: 261 -ISDCFSNFDDLEYLSLGYNRLQGT-----ISSIGLENLTFIKTLDLSFNELGQDISEIL 314
            ++    ++ +L  L L    L        + +        ++TL L +NE+  D    L
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294

Query: 315 DIISACAAFELESLFLRGCKIS------GQLTNQLGLFKNLHTLALSDN 357
             +      +L  L L G + S       ++              L D 
Sbjct: 295 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 49/363 (13%), Positives = 91/363 (25%), Gaps = 85/363 (23%)

Query: 193 ANFSSLNALDLSGNLFGKTSIPSWVFGL---SDLVFLDLSSNIFRGP-----IPDGFKNL 244
           A FS +    L  +        S    L     +  + LS N   G      + +   + 
Sbjct: 2   ARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASK 59

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
             L   + S         +       L                  L     + T+ LS N
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLL---------------LQALLKCPKLHTVRLSDN 104

Query: 305 ELG-QDISEILDIISACAAFELESLFLRGCKIS-------------GQLTNQLGLFKNLH 350
             G      ++D +S      LE L+L    +                +  +      L 
Sbjct: 105 AFGPTAQEPLIDFLSKHTP--LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162

Query: 351 TLALSDNSVSGP----LPPASGELSSLTYLDLSNNNLN--GMISEIHFGNLTELAFFYAN 404
           ++    N +                 L  + +  N +   G+   +  G           
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG----------- 211

Query: 405 GNSVNFKINSKWVPPFQLLALRLRSCHLGP----HFPSWLHSQKHLSKLDISNTRISDII 460
                           +L  L L+               L S  +L +L +++  +S   
Sbjct: 212 -----LAYCQ------ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260

Query: 461 PRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT--GSIPIS---MGTLTSLRSLNLRSN 515
                ++  +       +    L+ L L  N+        +       +  L  L L  N
Sbjct: 261 AAAVVDAFSK-------LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313

Query: 516 RLS 518
           R S
Sbjct: 314 RFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 34/271 (12%), Positives = 69/271 (25%), Gaps = 67/271 (24%)

Query: 481 PDLRVLNLGNNKFT--GSIPISMG--TLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDM 536
             ++ + L  N      +  +S    +   L            +     E    L+    
Sbjct: 32  DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ--- 88

Query: 537 GENEFVGNIPTWMGERFSRLRILNLRSNKL--HGIFPI--QICHLSSLQILDVAYNRLSG 592
                          +  +L  + L  N        P+   +   + L+ L +  N L  
Sbjct: 89  ------------ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG- 135

Query: 593 SVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSID 652
             P+                             I   +  +      +    L   RSI 
Sbjct: 136 --PQAGA-------------------------KIARALQELAVNKKAKNAPPL---RSII 165

Query: 653 ISMNNFSGE----IPMEVTNLKGLQSLNLSHNSF-----IGKIPETIGNMRSIESLDLSG 703
              N               + + L ++ +  N          + E +   + ++ LDL  
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225

Query: 704 NQISGK----IPQSMSSLSFLNHLNLSDNKL 730
           N  +      +  ++ S   L  L L+D  L
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 44/338 (13%), Positives = 90/338 (26%), Gaps = 83/338 (24%)

Query: 421 QLLALRLRSCHLGP----HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDC 476
            +  + L    +G          + S+K L   + S+     +             +   
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL---LLQA 89

Query: 477 WMNWPDLRVLNLGNNKFT--GSIPIS--MGTLTSLRSLNLRSNRLSGIIPVPFENCSQLV 532
            +  P L  + L +N F      P+   +   T L  L L +N L              +
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG-------PQAGAKI 142

Query: 533 ALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQIC----HLSSLQILDVAYN 588
           A  + E            +    LR +    N+L      +          L  + +  N
Sbjct: 143 ARALQELAVNKKA-----KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197

Query: 589 RLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLV 648
                    I        +                               + Y   L   
Sbjct: 198 G--------IRPEGIEHLLLE----------------------------GLAYCQEL--- 218

Query: 649 RSIDISMNNFSGE----IPMEVTNLKGLQSLNLSHNSF-------IGKIPETIGNMRSIE 697
           + +D+  N F+      + + + +   L+ L L+           +      + N   ++
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN-IGLQ 277

Query: 698 SLDLSGNQISGK----IPQSM-SSLSFLNHLNLSDNKL 730
           +L L  N+I       +   +   +  L  L L+ N+ 
Sbjct: 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSS 230
            ++  ++L    +    P A + +  L  +DLS N    + +    F GL  L  L L  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYG 89

Query: 231 NIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIG 289
           N     +P   F+ L SL+ L L+ N+ N    D F +  +L  LSL  N+LQ TI+   
Sbjct: 90  NKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGT 147

Query: 290 LENLTFIKTLDLSFN 304
              L  I+T+ L+ N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDL 228
               L+ + L + ++   AP A     SLN+L L GN    T +P  +F GL  L  L L
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI--TELPKSLFEGLFSLQLLLL 111

Query: 229 SSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
           ++N     +    F++L +L  L L  N+  +     FS    ++ + L  N
Sbjct: 112 NANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 38/174 (21%)

Query: 211 TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270
           T IP+ +     +  + L  N  +   P  F     LR +DLS NQ +    D F     
Sbjct: 24  TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81

Query: 271 LEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFL 330
           L  L L  N++   +     E L  ++ L L+ N++                     L  
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKI-------------------NCL-- 119

Query: 331 RGCKISGQLTNQLGLF---KNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNN 381
                      ++  F    NL+ L+L DN +          L ++  + L+ N
Sbjct: 120 -----------RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 10/120 (8%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
             +  + L  N      P +      LR ++L +N++S + P  F+    L +L +  N+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKL----HGIFPIQICHLSSLQILDVAYNRLSGSVPK 596
               +P  + E    L++L L +NK+       F      L +L +L +  N+L  ++ K
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ----DLHNLNLLSLYDNKLQ-TIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGT---LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMG 537
             LR ++L NN+ +  +         L SL SL L  N+++ +    FE    L  L + 
Sbjct: 56  KKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112

Query: 538 ENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYN 588
            N+ +  +     +    L +L+L  NKL  I       L ++Q + +A N
Sbjct: 113 ANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVF 225
               L SL  L L+  K+            SL  L L+ N      +    F  L +L  
Sbjct: 75  AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI--NCLRVDAFQDLHNLNL 132

Query: 226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFN 258
           L L  N  +      F  L +++ + L+ N F 
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 33/138 (23%)

Query: 270 DLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLF 329
            +  + L  N ++  I          ++ +DLS N++  +++          AF+     
Sbjct: 33  TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAP--------DAFQ----- 77

Query: 330 LRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS-GELSSLTYLDLSNNNLNGMIS 388
                    L +       L++L L  N ++  LP +    L SL  L L+ N +N  + 
Sbjct: 78  --------GLRS-------LNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINC-LR 120

Query: 389 EIHFGNLTELAFFYANGN 406
              F +L  L       N
Sbjct: 121 VDAFQDLHNLNLLSLYDN 138

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETI-GNMRSIESLDLSGNQI 706
           +  I +  N      P   +  K L+ ++LS+N  I ++       +RS+ SL L GN+I
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 707 SGKIPQSM-SSLSFLNHLNLSDNKL 730
           + ++P+S+   L  L  L L+ NK+
Sbjct: 93  T-ELPKSLFEGLFSLQLLLLNANKI 116

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 16/129 (12%)

Query: 437 PSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGS 496
           P      K L ++D+SN +IS++ P  F                  L  L L  NK T  
Sbjct: 49  PGAFSPYKKLRRIDLSNNQISELAPDAFQGL-------------RSLNSLVLYGNKIT-E 94

Query: 497 IPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555
           +P S+   L SL+ L L +N+++ +    F++   L  L + +N+    I          
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRA 153

Query: 556 LRILNLRSN 564
           ++ ++L  N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 38/172 (22%)

Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
            L + +  + L  N++    P A      L  +DLSNN ++  ++   F  L  L     
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVL 87

Query: 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRW 463
            GN              ++  L            S       L  L ++  +I+ +    
Sbjct: 88  YGN--------------KITELP----------KSLFEGLFSLQLLLLNANKINCLRVDA 123

Query: 464 FWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSN 515
           F              +  +L +L+L +NK       +   L ++++++L  N
Sbjct: 124 FQ-------------DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 69.7 bits (171), Expect = 9e-14
 Identities = 41/208 (19%), Positives = 71/208 (34%), Gaps = 50/208 (24%)

Query: 183 KLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIP--DG 240
            +  F    S   +    ++L G +     + + +  L     L LS+N     I     
Sbjct: 10  AIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN----IEKISS 65

Query: 241 FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTFIKTL 299
              + +LR L L  N     I +  +  D LE L + YN+    I+S+ G+E L  ++ L
Sbjct: 66  LSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQ----IASLSGIEKLVNLRVL 120

Query: 300 DLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSV 359
            +S N++  +  EI                           ++L     L  L L+ N +
Sbjct: 121 YMSNNKI-TNWGEI---------------------------DKLAALDKLEDLLLAGNPL 152

Query: 360 SGPLPPASGE----------LSSLTYLD 377
                  +            L +L  LD
Sbjct: 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 30/180 (16%), Positives = 50/180 (27%), Gaps = 40/180 (22%)

Query: 243 NLTSLRYLDLSYNQFN--STISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTFIKTL 299
             T    ++L +        +    S     ++L+L  N     I  I  L  +  ++ L
Sbjct: 21  VATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTNN----IEKISSLSGMENLRIL 75

Query: 300 DLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSV 359
            L  N     I +I                           N   +   L  L +S N +
Sbjct: 76  SLGRN----LIKKI--------------------------ENLDAVADTLEELWISYNQI 105

Query: 360 SGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPP 419
           +  L      L +L  L +SNN +           L +L      GN +           
Sbjct: 106 AS-LSGIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 486 LNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNI 545
           L+         +  ++ TL + + L L +N +  I  +       L  L +G N     I
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISSL--SGMENLRILSLGRN----LI 82

Query: 546 PTWMG--ERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS 591
                       L  L +  N++  +  I+   L +L++L ++ N+++
Sbjct: 83  KKIENLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 661 EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL 720
           ++   ++ LK  + L LS N+ I KI  ++  M ++  L L  N I  KI    +    L
Sbjct: 39  KMDATLSTLKACKHLALSTNN-IEKI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 721 NHLNLSDNKL 730
             L +S N++
Sbjct: 96  EELWISYNQI 105

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 668 NLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD 727
            ++ L+ L+L  N  I KI        ++E L +S NQI+  +   +  L  L  L +S+
Sbjct: 68  GMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSN 124

Query: 728 NKL 730
           NK+
Sbjct: 125 NKI 127

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 638 MVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIE 697
           M +  +I + +R  +         +  E   ++    L+      I K+  T+  +++ +
Sbjct: 1   MAKATTIKDAIRIFE----ERKSVVATEAEKVE----LHGMIPP-IEKMDATLSTLKACK 51

Query: 698 SLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKL 730
            L LS N I  KI  S+S +  L  L+L  N +
Sbjct: 52  HLALSTNNIE-KI-SSLSGMENLRILSLGRNLI 82

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 32/159 (20%), Positives = 51/159 (32%), Gaps = 36/159 (22%)

Query: 440 LHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPI 499
           L + K    L +S   I  I            ++        +LR+L+LG N     I  
Sbjct: 44  LSTLKACKHLALSTNNIEKI-----------SSLSGM----ENLRILSLGRNLIK-KIEN 87

Query: 500 SMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMG----ERFSR 555
                 +L  L +  N+++ +     E    L  L M  N     I  W          +
Sbjct: 88  LDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNN----KITNWGEIDKLAALDK 141

Query: 556 LRILNLRSNKLHGIFPIQ----------ICHLSSLQILD 584
           L  L L  N L+  +             +  L +L+ LD
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 49  VLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGF 108
            +EL+     +  K++  L  LK    L LS N+ + I     +  M+NLR L+L     
Sbjct: 27  KVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI---SSLSGMENLRILSLGRNLI 82

Query: 109 AGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVI 168
              I +       L  L +S +    ++  +S +     L  L  S+ + I     +  +
Sbjct: 83  KK-IENLDAVADTLEELWISYN----QIASLSGIEKLVNLRVLYMSN-NKITNWGEIDKL 136

Query: 169 NSLPSLKVLKL 179
            +L  L+ L L
Sbjct: 137 AALDKLEDLLL 147

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 36/205 (17%), Positives = 75/205 (36%), Gaps = 27/205 (13%)

Query: 116 LGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLK 175
              L+N +  +L        V D+      S +++ +  + ++   +     +    +LK
Sbjct: 15  DPGLANAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNIQSLAG----MQFFTNLK 66

Query: 176 VLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRG 235
            L L   ++   +PL   + + L  L ++ N     ++       + L  L L +N    
Sbjct: 67  ELHLSHNQISDLSPL--KDLTKLEELSVNRNRL--KNLNG--IPSACLSRLFLDNN---- 116

Query: 236 PIPD--GFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI-GLEN 292
            + D     +L +L  L +  N+  S           LE L L  N     I++  GL  
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNE----ITNTGGLTR 170

Query: 293 LTFIKTLDLSFNELGQDISEILDII 317
           L  +  +DL+  +   +  +    +
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPEL 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 38/231 (16%)

Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD 227
              L +     L    +           S +   +   +     S+   +   ++L  L 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNI--QSLAG-MQFFTNLKELH 69

Query: 228 LSSNIFRGPIPD--GFKNLTSLRYLDLSYNQFNSTISD-CFSNFDDLEYLSLGYNRLQGT 284
           LS N     I D    K+LT L  L ++ N+    + +        L  L L  N     
Sbjct: 70  LSHN----QISDLSPLKDLTKLEELSVNRNR----LKNLNGIPSACLSRLFLDNNE---- 117

Query: 285 ISSI-GLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQL 343
           +     L +L  ++ L +  N+L + I  +  +        LE L L G +I+   T  L
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNKL-KSIVMLGFLSK------LEVLDLHGNEITN--TGGL 168

Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNN--NLNGMISEIHF 392
              K ++ + L+           +  +     L ++N   + +G     ++
Sbjct: 169 TRLKKVNWIDLTGQKCV------NEPVKYQPELYITNTVKDPDGRWISPYY 213

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 34/247 (13%), Positives = 75/247 (30%), Gaps = 53/247 (21%)

Query: 67  LVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLD 126
              L +    +L       +        +  ++  N   +         +   +NL  L 
Sbjct: 15  DPGLANAVKQNLGKQSVTDL---VSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELH 69

Query: 127 LSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH 186
           LS +    ++ D+S                           +  L  L+ L +   +L +
Sbjct: 70  LSHN----QISDLS--------------------------PLKDLTKLEELSVNRNRLKN 99

Query: 187 FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPD--GFKNL 244
              + SA    L+ L L  N   +      +  L +L  L + +N     +        L
Sbjct: 100 LNGIPSAC---LSRLFLDNN---ELRDTDSLIHLKNLEILSIRNN----KLKSIVMLGFL 149

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
           + L  LDL  N+  +      +    + ++ L   +      +  ++    +   +   +
Sbjct: 150 SKLEVLDLHGNEI-TNTGG-LTRLKKVNWIDLTGQK----CVNEPVKYQPELYITNTVKD 203

Query: 305 ELGQDIS 311
             G+ IS
Sbjct: 204 PDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 44/247 (17%), Positives = 82/247 (33%), Gaps = 59/247 (23%)

Query: 343 LGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEI-HFGNLTELAFF 401
                N     L   SV+  +     ELS +   +  N+N    I  +      T L   
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSN----IQSLAGMQFFTNLKEL 68

Query: 402 YANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIP 461
           + + N    +I+   + P + L                      L +L ++  R+ ++  
Sbjct: 69  HLSHN----QISD--LSPLKDL--------------------TKLEELSVNRNRLKNLNG 102

Query: 462 RWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGII 521
                           +    L  L L NN+   +  +    L +L  L++R+N+L  I 
Sbjct: 103 ----------------IPSACLSRLFLDNNELRDTDSLI--HLKNLEILSIRNNKLKSI- 143

Query: 522 PVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQ 581
            V     S+L  LD+  NE + N       R  ++  ++L   K        + +   L 
Sbjct: 144 -VMLGFLSKLEVLDLHGNE-ITNTGGL--TRLKKVNWIDLTGQK---CVNEPVKYQPELY 196

Query: 582 ILDVAYN 588
           I +   +
Sbjct: 197 ITNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 37/238 (15%), Positives = 83/238 (34%), Gaps = 46/238 (19%)

Query: 67  LVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLD 126
             +L  +   +   ++ Q +     +    NL+ L+LS    +   P  L +L+ L  L 
Sbjct: 37  QKELSGVQNFNGDNSNIQSL---AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91

Query: 127 LSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH 186
           ++ +    R+++++ +     L  L   + +L         +  L +L++L + + KL  
Sbjct: 92  VNRN----RLKNLNGIPSAC-LSRLFLDNNELRDTDS----LIHLKNLEILSIRNNKLKS 142

Query: 187 FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTS 246
              L     S L  LDL GN             +++                 G   L  
Sbjct: 143 IVML--GFLSKLEVLDLHGN------------EITNT---------------GGLTRLKK 173

Query: 247 LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
           + ++DL+  +    +++      +L   +   +     IS   + N        + + 
Sbjct: 174 VNWIDLTGQKC---VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 44/311 (14%), Positives = 87/311 (27%), Gaps = 92/311 (29%)

Query: 285 ISSI-GLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQL 343
           I+ +     L      +L    +  D+    ++        +++       I   L   +
Sbjct: 9   INQVFPDPGLANAVKQNLGKQSV-TDLVSQKELSG------VQNFNGDNSNIQ-SLAG-M 59

Query: 344 GLFKNLHTLALSDNSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFF 401
             F NL  L LS N +S   PL     +L+ L  L ++ N     +  ++          
Sbjct: 60  QFFTNLKELHLSHNQISDLSPL----KDLTKLEELSVNRNR----LKNLNGIPSA----- 106

Query: 402 YANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIP 461
                                                       LS+L + N  + D   
Sbjct: 107 -------------------------------------------CLSRLFLDNNELRDTDS 123

Query: 462 RWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGII 521
                           ++  +L +L++ NNK    + +    L+ L  L+L  N ++   
Sbjct: 124 ---------------LIHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEITNTG 166

Query: 522 PVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN-LRSNKLHGIFPIQICHLSSL 580
                   ++  +D+              +    L I N ++      I P  I +  S 
Sbjct: 167 --GLTRLKKVNWIDLTGQ----KCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSY 220

Query: 581 QILDVAYNRLS 591
               V +    
Sbjct: 221 VDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 60/259 (23%)

Query: 479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGE 538
              +    NLG    T  +      L+ +++ N  ++ +  +     +  + L  L +  
Sbjct: 17  GLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 539 NEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598
           N+ + ++     +  ++L  L++  N+L  +  I     + L  L +  N L     +  
Sbjct: 73  NQ-ISDLSPL--KDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNEL-----RDT 121

Query: 599 NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNF 658
           ++   +  +                    E +S+         N + ++V          
Sbjct: 122 DSLIHLKNL--------------------EILSI-------RNNKLKSIV---------- 144

Query: 659 SGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS 718
                  +  L  L+ L+L  N  I      +  ++ +  +DL+G +   +  +    L 
Sbjct: 145 ------MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELY 196

Query: 719 FLNHLNLSDNKLVGKIPSS 737
             N +   D + +     S
Sbjct: 197 ITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 34/256 (13%), Positives = 89/256 (34%), Gaps = 61/256 (23%)

Query: 512 LRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFP 571
            R   ++ + P      +  V  ++G+   V ++ +   +  S ++  N  ++ +  +  
Sbjct: 4   QRPTPINQVFPD--PGLANAVKQNLGKQS-VTDLVS--QKELSGVQNFNGDNSNIQSLAG 58

Query: 572 IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEIS 631
           +Q    ++L+ L +++N++S      ++                                
Sbjct: 59  MQ--FFTNLKELHLSHNQIS-----DLSPLKD---------------------------- 83

Query: 632 LVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIG 691
                        L  +  + ++ N       +       L  L L +N  +    +++ 
Sbjct: 84  -------------LTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNE-LRDT-DSLI 125

Query: 692 NMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN 751
           +++++E L +  N++   I   +  LS L  L+L  N++       T+L+      +TG 
Sbjct: 126 HLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQ 182

Query: 752 DLCGAPLSNCTEKNVL 767
                P+    E  + 
Sbjct: 183 KCVNEPVKYQPELYIT 198

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.5 bits (177), Expect = 2e-13
 Identities = 51/306 (16%), Positives = 93/306 (30%), Gaps = 17/306 (5%)

Query: 18  FKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLD 77
                  L          EW      N   HV   +L  + L  ++      +       
Sbjct: 268 GSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDS 327

Query: 78  LSGNDFQGIQI---PEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYEL 134
                    +         + + L    LS          +L +   L  L+    +  L
Sbjct: 328 QKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLL 386

Query: 135 RVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASAN 194
            +     +     L+ L     + ++    L  ++ + +  +  L S  L     +    
Sbjct: 387 TI-----ILLMRALDPLLYEK-ETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN-SVLKME 439

Query: 195 FSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY 254
           ++ +  L L+      T +   +  L  +  LDLS N  R  +P     L  L  L  S 
Sbjct: 440 YADVRVLHLAHKDL--TVLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASD 495

Query: 255 NQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEIL 314
           N     +    +N   L+ L L  NRLQ + +   L +   +  L+L  N L Q+     
Sbjct: 496 NAL-ENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553

Query: 315 DIISAC 320
            +    
Sbjct: 554 RLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.1 bits (163), Expect = 1e-11
 Identities = 56/304 (18%), Positives = 93/304 (30%), Gaps = 49/304 (16%)

Query: 59  LGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGN 118
             G+  P+ V L  L    L+    Q      + GS D+ +   L       W       
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGS-DSQKECVLLKDRPECW-CRDSAT 347

Query: 119 LSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDT-SDVDLIKASDWLLVINSLPSLKVL 177
              L   +LS                 S LE      +++       L +I  + +L  L
Sbjct: 348 DEQLFRCELS---------VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL 398

Query: 178 KLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPI 237
                 L +F+ L + +      LD   + F            +D+  L L+       +
Sbjct: 399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKF-LLENSVLKMEYADVRVLHLAHKDLT--V 455

Query: 238 PDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTFI 296
               + L  + +LDLS+N+    +    +    LE L    N     + ++ G+ NL  +
Sbjct: 456 LCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA----LENVDGVANLPRL 510

Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
           + L L  N L Q  + I                             L     L  L L  
Sbjct: 511 QELLLCNNRL-QQSAAIQ---------------------------PLVSCPRLVLLNLQG 542

Query: 357 NSVS 360
           NS+ 
Sbjct: 543 NSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 3e-11
 Identities = 51/331 (15%), Positives = 101/331 (30%), Gaps = 35/331 (10%)

Query: 414 SKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTI 473
           S+ +     +   L      P    W            S+  + D+      + + Q T 
Sbjct: 262 SRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP---SHVWLCDLPAASLNDQLPQHTF 318

Query: 474 PDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVA 533
              W      +   L  ++          T   L    L   + + ++    E+C +L  
Sbjct: 319 RVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQE 376

Query: 534 LDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGS 593
           L+      +  I            IL +R+          + + S+L+ +D         
Sbjct: 377 LEPENKWCLLTI------------ILLMRALDPLLYEKETLQYFSTLKAVD--------- 415

Query: 594 VPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDI 653
            P        + +             +      +    L +    + +   L LV  +D+
Sbjct: 416 -PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV----LCHLEQLLLVTHLDL 470

Query: 654 SMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISG-KIPQ 712
           S N     +P  +  L+ L+ L  S N  +  +   + N+  ++ L L  N++      Q
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNNRLQQSAAIQ 527

Query: 713 SMSSLSFLNHLNLSDNKLVGKIPSSTQLQSF 743
            + S   L  LNL  N L  +     +L   
Sbjct: 528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 8e-09
 Identities = 47/345 (13%), Positives = 103/345 (29%), Gaps = 43/345 (12%)

Query: 418 PPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW 477
                + +      L   F   L     +  L +        +     +   +       
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP----SH 298

Query: 478 MNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMG 537
           +   DL   +L +     +  +      S +   L  +R             QL   ++ 
Sbjct: 299 VWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRCELS 357

Query: 538 ENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKC 597
                         + + L+       +L  + P     L ++ +L  A + L     + 
Sbjct: 358 VE------------KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL-YEKET 404

Query: 598 INNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNN 657
           +  F+ +  +            S                           VR + ++  +
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD------------VRVLHLAHKD 452

Query: 658 FSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSL 717
            +  +   +  L  +  L+LSHN  +  +P  +  +R +E L  S N +   +   +++L
Sbjct: 453 LT-VLC-HLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALE-NVD-GVANL 507

Query: 718 SFLNHLNLSDNKL-----VGKIPSSTQLQSFGASSITGNDLCGAP 757
             L  L L +N+L     +  + S  +L      ++ GN LC   
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLL---NLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 50/351 (14%), Positives = 96/351 (27%), Gaps = 52/351 (14%)

Query: 64  NPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLM 123
              ++   H++  +   +      +         L  ++ +        P      S++ 
Sbjct: 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVW 300

Query: 124 HLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCK 183
             DL  +    ++   ++    +  +      +   +   W     +   L   +L S +
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCEL-SVE 359

Query: 184 LHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKN 243
                     +   L  L+        T I      +  L  L       +      F  
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTII----LLMRALDPLLYEKETLQY-----FST 410

Query: 244 LTSLRYLDLSYNQFNS-----TISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTFIK 297
           L ++  +  +Y            S     + D+  L L +      ++ +  LE L  + 
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD----LTVLCHLEQLLLVT 466

Query: 298 TLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDN 357
            LDLS N L                                L   L   + L  L  SDN
Sbjct: 467 HLDLSHNRLRA------------------------------LPPALAALRCLEVLQASDN 496

Query: 358 SVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSV 408
           ++   +      L  L  L L NN L    +     +   L      GNS+
Sbjct: 497 ALEN-VDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 7/136 (5%)

Query: 172 PSLKVLKLFSCKLHHFAPLAS-ANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLS 229
                L+L + +               L  ++ S N    T I    F G S +  + L+
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLT 89

Query: 230 SNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI 288
           SN     +    FK L SL+ L L  N+     +D F     +  LSL  N++  T++  
Sbjct: 90  SNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPG 147

Query: 289 GLENLTFIKTLDLSFN 304
             + L  + TL+L  N
Sbjct: 148 AFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDL 228
            LP L+ +   + K+      A    S +N + L+ N     ++   +F GL  L  L L
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL--ENVQHKMFKGLESLKTLML 112

Query: 229 SSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
            SN     + +  F  L+S+R L L  NQ  +     F     L  L+L  N
Sbjct: 113 RSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT---LTSLRSLNLRSNRLSGIIP 522
           N          +   P LR +N  NNK T    I  G     + +  + L SNRL  +  
Sbjct: 42  NEFTVLEATGIFKKLPQLRKINFSNNKITD---IEEGAFEGASGVNEILLTSNRLENVQH 98

Query: 523 VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKL----HGIFPIQICHLS 578
             F+    L  L +  N     +        S +R+L+L  N++     G F      L 
Sbjct: 99  KMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD----TLH 153

Query: 579 SLQIL 583
           SL  L
Sbjct: 154 SLSTL 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVF 225
                  +  + L S +L +          SL  L L  N    T + +  F GLS +  
Sbjct: 76  AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI--TCVGNDSFIGLSSVRL 133

Query: 226 LDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFN 258
           L L  N     +  G F  L SL  L+L  N FN
Sbjct: 134 LSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 26/170 (15%), Positives = 59/170 (34%), Gaps = 39/170 (22%)

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
                L L+NN    + +   F  L +L     + N              ++  +     
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN--------------KITDIE---- 73

Query: 431 HLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN 490
                          ++++ +++ R+ ++  + F                  L+ L L +
Sbjct: 74  ------EGAFEGASGVNEILLTSNRLENVQHKMFKGL-------------ESLKTLMLRS 114

Query: 491 NKFTGSIPISMGT-LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGEN 539
           N+ T  +       L+S+R L+L  N+++ + P  F+    L  L++  N
Sbjct: 115 NRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 32/150 (21%)

Query: 270 DLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAF----EL 325
               L L  N      ++   + L  ++ ++ S N++  DI E         AF     +
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEE--------GAFEGASGV 83

Query: 326 ESLFLRGCKISGQLTNQL-----GLFK---NLHTLALSDNSVSGPLPPAS-GELSSLTYL 376
             + L          N+L      +FK   +L TL L  N ++  +   S   LSS+  L
Sbjct: 84  NEILLTS--------NRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLL 134

Query: 377 DLSNNNLNGMISEIHFGNLTELAFFYANGN 406
            L +N +   ++   F  L  L+      N
Sbjct: 135 SLYDNQITT-VAPGAFDTLHSLSTLNLLAN 163

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 1e-11
 Identities = 82/581 (14%), Positives = 185/581 (31%), Gaps = 149/581 (25%)

Query: 13  KLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVL-ELNLERSELGGKINPALVDLK 71
            +K + + PS     +I   D       + N+    V  + N+ R +   K+  AL++L+
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRD------RLYND--NQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 72  HLNLLDLSG--------------NDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLG 117
               + + G                ++     +       + +LNL        +   L 
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-----FKIFWLNLKNCNSPETVLEMLQ 203

Query: 118 NLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDW---LLVINSLPSL 174
            L  L  +D + +       +I        +  +      L+K+  +   LLV+ ++ + 
Sbjct: 204 KL--LYQIDPNWTSRSDHSSNI-----KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 175 KVLKLF--SCKLHHFAPLASANFSSLNALDLSGNLFGKTSI--PSWVFGLSDL--VFL-- 226
           K    F  SCK+     L +  F  +    LS       S+   S      ++  + L  
Sbjct: 257 KAWNAFNLSCKI-----LLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 227 ------DLSSNIFRG-P-----IPDGFKNLTSL--RYLDLSYNQFNSTISDCFSNFDDLE 272
                 DL   +    P     I +  ++  +    +  ++ ++  + I    +  +  E
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 273 YLSLGYNRLQGTISSIGLENLTFI--KTLDLSFNELGQDISEILDIISACAAFELESLFL 330
           Y  + ++RL     S+   +   I    L L + ++    S+++ +++    +   SL  
Sbjct: 371 YRKM-FDRL-----SVFPPS-AHIPTILLSLIWFDV--IKSDVMVVVNKLHKY---SLVE 418

Query: 331 RGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEI 390
           +  K    ++        + ++                      YL+L     N     +
Sbjct: 419 KQPK-ESTIS--------IPSI----------------------YLELKVKLEN--EYAL 445

Query: 391 HFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRS---CHLGPHFPSWLHSQKH-- 445
           H  ++ +           ++ I   +     L+   L      H+G H  +  H ++   
Sbjct: 446 H-RSIVD-----------HYNIPKTF-DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 446 LSK--LDISNTRISDIIPRWFWNSIYQDTIPDCWMN--WPDLRVLNLGNNKFTGSIPISM 501
                LD           R+    I  D+            L+ L         + P   
Sbjct: 493 FRMVFLDF----------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 502 GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFV 542
             + ++     +      +I   + +  ++ AL M E+E +
Sbjct: 543 RLVNAILDFLPKIE--ENLICSKYTDLLRI-AL-MAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 6e-09
 Identities = 100/594 (16%), Positives = 174/594 (29%), Gaps = 170/594 (28%)

Query: 132 YELRVEDI-----SWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH 186
            +  VE++      +L  P   E    S +  +       + N        K    +L  
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQP 136

Query: 187 FAPLASANFSSLNALDLSGNL-------FGKTSIPSWVFGLSDLVFLD-LSSNIF----- 233
           +  L  A    L  L  + N+        GKT +   V           +   IF     
Sbjct: 137 YLKLRQA----LLELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIFWLNLK 190

Query: 234 RGPIPDG-FKNLTSLRY-LDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLE 291
               P+   + L  L Y +D ++   +   S+       ++        L+  + S   E
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ------AELRRLLKSKPYE 244

Query: 292 NLTFIKTLDLSFNELGQDI--SEILDIISACAAFELESLFLRGCKI-----SGQLTNQLG 344
           N   +  L         ++  ++  +      AF L       CKI       Q+T+ L 
Sbjct: 245 NCLLV--LL--------NVQNAKAWN------AFNL------SCKILLTTRFKQVTDFLS 282

Query: 345 LFKNLHTLALSDNSVSGPL-PPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
                 T  +S +  S  L P     L    YLD    +L     E+   N         
Sbjct: 283 ---AATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLP---REVLTTN--------- 326

Query: 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGP-HFPSWLHSQ--KHLSKLDIS-NTRISDI 459
                          P   L++   S   G   + +W H    K  + ++ S N      
Sbjct: 327 ---------------PR-RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 460 IPRWFWN-SIYQDT--IPD-----CWMNWP------------DLRVLNLGNNKFTGSIP- 498
             + F   S++  +  IP       W +                 ++     + T SIP 
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 499 ------ISMGTLTSL-RSL-----NLRSNRLSGIIPVPFEN--CSQLVALDMGENEFVGN 544
                 + +    +L RS+       ++     +IP   +    S +    +   E    
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-GHHLKNIE---- 485

Query: 545 IPTWMGERFSRLRI--LNLR--SNKL-HGIFPIQICH--LSSLQILDVAYNRLSGSVPKC 597
                 ER +  R+  L+ R    K+ H           L++LQ L      +  + PK 
Sbjct: 486 ----HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK- 540

Query: 598 INNFTAMATIGSHHQVKAIYHASF-----ENDYIVEEISLVMKGFMVEYNSILN 646
              +  +        V AI    F     EN    +   L+    M E  +I  
Sbjct: 541 ---YERL--------VNAILD--FLPKIEENLICSKYTDLLRIALMAEDEAIFE 581

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 32/186 (17%)

Query: 211 TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270
            S+PS +   +D   LDL S          F+ LT L +L+L YNQ  +  +  F +  +
Sbjct: 27  DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84

Query: 271 LEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAF----ELE 326
           L  L L  N+L  ++     ++LT +  L L  N+L + +            F    +L+
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPS--------GVFDRLTKLK 134

Query: 327 SLFLRGCKISGQLTNQL-----GLF---KNLHTLALSDNSVSGPLPPASGELSSLTYLDL 378
            L L         TNQL     G F    NL TL+LS N +      A   L  L  + L
Sbjct: 135 ELRLN--------TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

Query: 379 SNNNLN 384
             N  +
Sbjct: 187 FGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 12/148 (8%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
           D   L+L +         +   LT L  LNL  N+L  +    F++ ++L  L +  N+ 
Sbjct: 36  DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95

Query: 542 VGNIPTWMGERFSRLRILNLRSNKL----HGIFPIQICHLSSLQILDVAYNRLSGSVPKC 597
             ++P  + +  ++L  L L  N+L     G+F      L+ L+ L +  N+L  S+P  
Sbjct: 96  A-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD----RLTKLKELRLNTNQLQ-SIPAG 149

Query: 598 I-NNFTAMATIGSHH-QVKAIYHASFEN 623
             +  T + T+     Q++++ H +F+ 
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVF 225
           V + L  L  L L   +L           + L  L L+ N     SIP+  F  L++L  
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL--QSIPAGAFDKLTNLQT 159

Query: 226 LDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLS 275
           L LS+N  +  +P G F  L  L+ + L  NQF     DC     ++ YLS
Sbjct: 160 LSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQF-----DCSRC--EILYLS 202

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 16/147 (10%)

Query: 448 KLDISNTRISDIIPRWFWNSIYQDTIPDCWMNW------------PDLRVLNLGNNKFTG 495
           KLD+ +T ++ +    F   + + T  +   N              +L  L L NN+   
Sbjct: 39  KLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 496 SIPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFS 554
           S+P+ +   LT L  L L  N+L  +    F+  ++L  L +  N+   +IP    ++ +
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLT 155

Query: 555 RLRILNLRSNKLHGIFPIQICHLSSLQ 581
            L+ L+L +N+L  +       L  LQ
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQ 182

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.7 bits (160), Expect = 3e-11
 Identities = 78/494 (15%), Positives = 146/494 (29%), Gaps = 75/494 (15%)

Query: 48  HVLELNLERSELGGKINPALVDL----KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNL 103
           H  + NL     GG + P +  +      L  + L         +     S  N + L L
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 104 SG-AGF-AGWIPHQLGNLSNLMHLDLSGSYY-ELRVEDISWLA-GPSLLEHLDTSDV-DL 158
           S   GF    +        NL  LDL  S   ++    +S      + L  L+ S +   
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197

Query: 159 IKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSG-----NLFGKTSI 213
           +  S    ++   P+LK LKL                  L  L   G          + +
Sbjct: 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257

Query: 214 PSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNST-ISDCFSNFDDLE 272
              + G  +L  L    +     +P  +   + L  L+LSY    S  +         L+
Sbjct: 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQ 317

Query: 273 YLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISE-------ILDIISACAAFEL 325
            L +        +  +       ++ L +  +E              ++ +   C   +L
Sbjct: 318 RLWVLDYIEDAGLEVLA-STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP--KL 374

Query: 326 ESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNG 385
           ES+     +++            L T+A +                ++T   L    +  
Sbjct: 375 ESVLYFCRQMTN---------AALITIARN--------------RPNMTRFRLCI--IEP 409

Query: 386 MISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKH 445
              +       ++ F     +  +            L  L L        F       K 
Sbjct: 410 KAPDYLTLEPLDIGFGAIVEHCKD------------LRRLSLSGLLTDKVFEYIGTYAKK 457

Query: 446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTG-SIPISMGTL 504
           +  L ++    SD+      +         C      LR L + +  F   ++  +   L
Sbjct: 458 MEMLSVAFAGDSDLGMHHVLSG--------C----DSLRKLEIRDCPFGDKALLANASKL 505

Query: 505 TSLRSLNLRSNRLS 518
            ++RSL + S  +S
Sbjct: 506 ETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 76/501 (15%), Positives = 139/501 (27%), Gaps = 102/501 (20%)

Query: 120 SNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKL 179
             +  ++L G        D +          L               + +S   L+ ++L
Sbjct: 66  PKVRSVELKGK---PHFADFN----------LVPDGWGGYVYPWIEAMSSSYTWLEEIRL 112

Query: 180 FSCKL--HHFAPLASANFSSLNALDLSG-NLFGKTSIPSWVFGLSDLVFLDLSSNIFRGP 236
               +       +A  +F +   L LS    F    + +      +L  LDL  +     
Sbjct: 113 KRMVVTDDCLELIA-KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV 171

Query: 237 IPDGF----KNLTSLRYLDLSYNQFNSTISDCFSNFDD--LEYLSLGYNRLQGTISSIGL 290
                       TSL  L++S            S      LE L               +
Sbjct: 172 SGHWLSHFPDTYTSLVSLNIS---------CLASEVSFSALERL---------------V 207

Query: 291 ENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQ------LTNQLG 344
                +K+L L+     + ++ +L          LE L   G     +      L+  L 
Sbjct: 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQ-----LEELGTGGYTAEVRPDVYSGLSVALS 262

Query: 345 LFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL--NGMISEI-HFGNLTELAFF 401
             K L  L+   ++V   LP      S LT L+LS   +    ++  +     L  L   
Sbjct: 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322

Query: 402 YANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSW----------LHSQKHLSKLDI 451
               ++    + S       L  LR+         P+                 L  +  
Sbjct: 323 DYIEDAGLEVLASTCK---DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379

Query: 452 SNTRISD-----------------------IIPRWFWNSIYQDTIPDCWMNWPDLRVLNL 488
              ++++                         P +               +  DLR L+L
Sbjct: 380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439

Query: 489 GNNKFTGSIPISMGT-LTSLRSLNLRSNRLS--GIIPVPFENCSQLVALDMGENEFVGNI 545
                T  +   +GT    +  L++     S  G+  V    C  L  L++ +  F    
Sbjct: 440 SGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV-LSGCDSLRKLEIRDCPFGDKA 497

Query: 546 PTWMGERFSRLRILNLRSNKL 566
                 +   +R L + S  +
Sbjct: 498 LLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 4e-07
 Identities = 75/579 (12%), Positives = 156/579 (26%), Gaps = 105/579 (18%)

Query: 153 TSDVDLIKAS----DWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLF 208
             D D    S     W  +       + + + +C     A +    F  + +++L G   
Sbjct: 22  QLDKDRNSVSLVCKSWYEIERW--CRRKVFIGNCYAVSPATVIR-RFPKVRSVELKGKPH 78

Query: 209 GKTSIPSWVFGLSDLVFLDLSSNIFRGP-IPDGFKNLTSLRYLDLSYNQFN----STISD 263
                       +D   +      +  P I     + T L  + L            I+ 
Sbjct: 79  -----------FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK 127

Query: 264 CFSNFDDLEYLSLGYNRLQGTISSIGL----ENLTFIKTLDLSFNELGQDISEILDIISA 319
            F N    + L L         S+ GL         +K LDL  +++       L     
Sbjct: 128 SFKN---FKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181

Query: 320 CAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLS 379
                L SL +     + +++     F  L  L                   +L  L L+
Sbjct: 182 TYT-SLVSLNISCL--ASEVS-----FSALERLVTR--------------CPNLKSLKLN 219

Query: 380 NN-NLNGMISEIHFG-NLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLG---P 434
               L  + + +     L EL              +   V       LR  S        
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279

Query: 435 HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT 494
           + P+       L+ L++S   +                +       P L+ L + +    
Sbjct: 280 YLPAVYSVCSRLTTLNLSYATVQS------------YDLVKLLCQCPKLQRLWVLDYIED 327

Query: 495 GSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFS 554
             + +   T   LR L +  +    + P        LV++                    
Sbjct: 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV---------------SMGCP 372

Query: 555 RLRILNLRSNKL--HGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNF-TAMATIGSH- 610
           +L  +     ++    +  I   +  ++    +            +         I  H 
Sbjct: 373 KLESVLYFCRQMTNAALITI-ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431

Query: 611 HQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE-IPMEVTNL 669
             ++ +  +    D + E I            +    +  + ++    S   +   ++  
Sbjct: 432 KDLRRLSLSGLLTDKVFEYIG-----------TYAKKMEMLSVAFAGDSDLGMHHVLSGC 480

Query: 670 KGLQSLNLSHNSFIGK-IPETIGNMRSIESLDLSGNQIS 707
             L+ L +    F  K +      + ++ SL +S   +S
Sbjct: 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285
           + L++ +        + N    R LDL   +    I +  +  D  + +    N     I
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE----I 54

Query: 286 SSI-GLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLT-NQL 343
             + G   L  +KTL ++ N     I  I + +      +L  L L    +      + L
Sbjct: 55  RKLDGFPLLRRLKTLLVNNNR----ICRIGEGLDQALP-DLTELILTNNSLVELGDLDPL 109

Query: 344 GLFKNLHTLALSDNSVS 360
              K+L  L +  N V+
Sbjct: 110 ASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 289 GLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKN 348
              N    + LDL     G  I  I ++ +     + +++     +I  +L     L + 
Sbjct: 14  QYTNAVRDRELDLR----GYKIPVIENLGATLD--QFDAIDFSDNEIR-KLDG-FPLLRR 65

Query: 349 LHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSV 408
           L TL +++N +          L  LT L L+NN+L  +       +L  L +     N V
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 4/113 (3%)

Query: 194 NFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLS 253
           N      LDL G       I +    L     +D S N  R  + DGF  L  L+ L ++
Sbjct: 17  NAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVN 72

Query: 254 YNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
            N+             DL  L L  N L        L +L  +  L +  N +
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 21/160 (13%), Positives = 45/160 (28%), Gaps = 43/160 (26%)

Query: 440 LHSQKHLSKLDISNTRISDI--IPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSI 497
             +     +LD+   +I  I  +                         ++  +N+     
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATL----------------DQFDAIDFSDNEIRKLD 58

Query: 498 PISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMG----ERF 553
                 L  L++L + +NR+  I     +    L  L +  N    ++            
Sbjct: 59  GFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN----SLVELGDLDPLASL 112

Query: 554 SRLRILNLRSNKLHGIFPIQ---------ICHLSSLQILD 584
             L  L +  N      P+          I  +  +++LD
Sbjct: 113 KSLTYLCILRN------PVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF--VGNIPTWMGERFSRLRILNL 561
               R L+LR  ++  I  +      Q  A+D  +NE   +   P        RL+ L +
Sbjct: 18  AVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDGFP-----LLRRLKTLLV 71

Query: 562 RSNKLHGIFPIQICHLSSLQILDVAYNRLS 591
            +N++  I       L  L  L +  N L 
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 668 NLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD 727
            L    +++ S N  I K+ +    +R +++L ++ N+I         +L  L  L L++
Sbjct: 40  TLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 728 NKL 730
           N L
Sbjct: 98  NSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 20/145 (13%)

Query: 115 QLGNLSNLMHLDLSGSYYELRVEDISWLAGP-SLLEHLDTSDVDLIKASDWLLVINSLPS 173
           Q  N      LDL G     ++  I  L       + +D SD ++ K   +      L  
Sbjct: 14  QYTNAVRDRELDLRGY----KIPVIENLGATLDQFDAIDFSDNEIRKLDGF----PLLRR 65

Query: 174 LKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIF 233
           LK L + + ++             L  L L+ N   +      +  L  L +L +  N  
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-- 123

Query: 234 RGPIPDG-------FKNLTSLRYLD 251
             P+ +           +  +R LD
Sbjct: 124 --PVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 313 ILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS--GPLPPASGEL 370
           I        A     L LRG KI   + N          +  SDN +      P     L
Sbjct: 9   IEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPL----L 63

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVN 409
             L  L ++NN +   I E     L +L       NS+ 
Sbjct: 64  RRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
           EL+L   ++   I      L   + +D S N+ + +   +    +  L+ L ++      
Sbjct: 23  ELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICR 78

Query: 111 WIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASD-WLLVIN 169
                   L +L  L L+ +     + D+  LA    L +L      +       L VI 
Sbjct: 79  IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 137

Query: 170 SLPSLKVL 177
            +P ++VL
Sbjct: 138 KVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 668 NLKGLQSLNLSHNSFIGKIPETIG-NMRSIESLDLSGNQISG-KIPQSMSSLSFLNHLNL 725
            L+ L++L +++N  I +I E +   +  +  L L+ N +        ++SL  L +L +
Sbjct: 62  LLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 726 SDN 728
             N
Sbjct: 121 LRN 123

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.1 bits (145), Expect = 8e-10
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 3/102 (2%)

Query: 209 GKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSN 267
           G       + G  +L  L + +      +     + L  LR L +  +       D F  
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 268 FDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQD 309
              L  L+L +N L+ ++S   ++ L+ ++ L LS N L   
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 661 EIPMEVTNLKGLQSLNLSHNSFIGKIP-ETIGNMRSIESLDLSGNQISGKIPQSMSSLSF 719
           +    +   + L  L + +   +  +    +  +  + +L +  + +    P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 720 LNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNC 761
           L+ LNLS N L      S   ++    S+    L G PL +C
Sbjct: 82  LSRLNLSFNAL-----ESLSWKTVQGLSLQELVLSGNPL-HC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 496 SIPISMGTLTSLRSLNLRSNRLSGIIP-VPFENCSQLVALDMGENEFVGNIPTWMGERFS 554
                +    +L  L + + +    +         +L  L + ++     +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 555 RLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRL 590
           RL  LNL  N L  +    +  L SLQ L ++ N L
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 27/123 (21%), Positives = 36/123 (29%), Gaps = 29/123 (23%)

Query: 112 IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSL 171
             H L    NL  L +                    L+HL+  D+              L
Sbjct: 23  SLHHLPGAENLTELYIENQ---------------QHLQHLELRDLR------------GL 55

Query: 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN 231
             L+ L +    L   AP A      L+ L+LS N     S+         L  L LS N
Sbjct: 56  GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL--ESLSWKTVQGLSLQELVLSGN 113

Query: 232 IFR 234
              
Sbjct: 114 PLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 12/151 (7%)

Query: 481 PDLRVLNLGNNKFTGSIP-ISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGEN 539
            +L  L + N +    +    +  L  LR+L +  + L  + P  F    +L  L++  N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 540 EFVGNIPTWMGERFS--RLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKC 597
                + +   +      L+ L L  N LH       C L  LQ  +             
Sbjct: 91  ----ALESLSWKTVQGLSLQELVLSGNPLH-----CSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 598 INNFTAMATIGSHHQVKAIYHASFENDYIVE 628
            +    +A + +             N  +  
Sbjct: 142 CHGQGPLAHMPNASCGVPTLKVQVPNASVDV 172

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 190 LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPD--GFKNLTSL 247
           L +   S +  L L  +   +  +        +L FL   +      +        L  L
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKL 66

Query: 248 RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
           + L+LS N+ +  +        +L +L+L  N+++   +   L+ L  +K+LDL   E+
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 242 KNLTSLRYLDLSYNQFNS-TISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTFIKTL 299
           +  + ++ L L  ++ N   +      F++LE+LS         ++SI  L  L  +K L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKLKKL 69

Query: 300 DLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLT-NQLGLFKNLHTLALSDNS 358
           +LS N     +S  L++++      L  L L G KI    T   L   +NL +L L +  
Sbjct: 70  ELSDNR----VSGGLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

Query: 359 VS 360
           V+
Sbjct: 125 VT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 288 IGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFK 347
           +     + +K L L  +    +  ++  +       ELE L      ++  + N L    
Sbjct: 11  LRNRTPSDVKELVLDNS--RSNEGKLEGLTDEFE--ELEFLSTINVGLT-SIAN-LPKLN 64

Query: 348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS 407
            L  L LSDN VSG L   + +  +LT+L+LS N +  + +      L  L         
Sbjct: 65  KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

Query: 408 V 408
           V
Sbjct: 125 V 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 660 GEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSF 719
           G++       + L+ L+  +   +  I   +  +  ++ L+LS N++SG +         
Sbjct: 32  GKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 720 LNHLNLSDNKL 730
           L HLNLS NK+
Sbjct: 90  LTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 17/124 (13%)

Query: 419 PFQLLALRLRSCHLG-PHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW 477
           P  +  L L +               + L  L   N  ++ I             +P   
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-----------ANLPKL- 63

Query: 478 MNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPV-PFENCSQLVALDM 536
                L+ L L +N+ +G + +      +L  LNL  N++  +  + P +    L +LD+
Sbjct: 64  ---NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

Query: 537 GENE 540
              E
Sbjct: 121 FNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 503 TLTSLRSLNLRSNRLSGI-IPVPFENCSQLVALDMGENEF--VGNIPTWMGERFSRLRIL 559
           T + ++ L L ++R +   +    +   +L  L         + N+P     + ++L+ L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP-----KLNKLKKL 69

Query: 560 NLRSNKLHGIFPIQICHLSSLQILDVAYNRLS 591
            L  N++ G   +      +L  L+++ N++ 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 16/141 (11%)

Query: 118 NLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVL 177
             S++  L L  S      +          LE L T +V L   ++    +  L  LK L
Sbjct: 15  TPSDVKELVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLTSIAN----LPKLNKLKKL 69

Query: 178 KLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPI 237
           +L   ++     + +    +L  L+LSGN     S    +  L +L  LDL +      +
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC----EV 125

Query: 238 PDG-------FKNLTSLRYLD 251
            +        FK L  L YLD
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 668 NLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISG-KIPQSMSSLSFLNHLNLS 726
            L  L+ L LS N   G +        ++  L+LSGN+I      + +  L  L  L+L 
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

Query: 727 DN 728
           + 
Sbjct: 122 NC 123

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 58/370 (15%), Positives = 106/370 (28%), Gaps = 84/370 (22%)

Query: 66  ALVDLKHLNLLDLSGNDFQGIQIPEYIGSM-----DNLRYLNLSG--------AGFAGWI 112
                  +  LDLS N+   I     +         ++  LNLSG              +
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSIST-VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 113 PHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLP 172
                  +N+  L+LSG+   L  +    L     L  +                     
Sbjct: 76  AA---IPANVTSLNLSGN--FLSYKSSDELV--KTLAAIPF------------------- 109

Query: 173 SLKVLKLFSCKL-----HHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSD----L 223
           ++ VL L            F    S   +S+ +L+L GN  G  S    +  L+     +
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169

Query: 224 VFLDLSSNIFRGPIPDGFKNL--------TSLRYLDLSYNQFN----STISDCF-SNFDD 270
             L+L  N            L         S+  LDLS N       + ++  F S  + 
Sbjct: 170 NSLNLRGNNLA---SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 271 LEYLSLGYNRLQGTIS---SIGLENLTFIKTLDLSFNELGQ----DISEILDIISACAAF 323
           +  L+L  N L G       +  ++L  ++T+ L ++ +          +          
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK- 285

Query: 324 ELESLFLRGCKISGQLTNQLG-----LFKNLHTLALSDNSVS-----GPLPPASGELSSL 373
            +  +   G +I    +  +      L       +L +  +                  L
Sbjct: 286 -IILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

Query: 374 TYLDLSNNNL 383
                +   L
Sbjct: 345 RESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 53/326 (16%), Positives = 101/326 (30%), Gaps = 74/326 (22%)

Query: 242 KNLTSLRYLDLSYNQFNST----ISDCF-SNFDDLEYLSLGYNRLQGT----ISSIGLEN 292
                +  LDLS N   S     +   F +    +  L+L  N L       +  I    
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 293 LTFIKTLDLSFNELG-QDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHT 351
              + +L+LS N L  +   E++  ++A     +  L L     S + +++         
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPF-TITVLDLGWNDFSSKSSSEFK------- 130

Query: 352 LALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFK 411
            A S+              +S+T L+L  N+L          +  EL    A   +    
Sbjct: 131 QAFSNLP------------ASITSLNLRGNDLGIK-------SSDELIQILAAIPA---- 167

Query: 412 INSKWVPPFQLLALRLRSCHLGPHFPSWL-----HSQKHLSKLDISNTRISDIIPRWFWN 466
                     + +L LR  +L     + L          ++ LD+S   +          
Sbjct: 168 ---------NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218

Query: 467 SIYQDTIPDCWMNWPDLRVLNLGNNKFTGS----IPISMGTLTSLRSLNLRSNRLSGIIP 522
                           +  LNL  N   G     + +   +L  L+++ L  + +  +  
Sbjct: 219 IFSS--------IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK 270

Query: 523 VP-------FENCSQLVALDMGENEF 541
                    F N  +++ +D    E 
Sbjct: 271 EQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 72/384 (18%), Positives = 124/384 (32%), Gaps = 93/384 (24%)

Query: 223 LVFLDLSSNIFRGPIPDGFKNL--------TSLRYLDLSYNQFNSTISDCF-----SNFD 269
           +  LDLS N            L         S+  L+LS N      SD       +   
Sbjct: 24  VTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 270 DLEYLSLGYNRLQGT----ISSIGLENLTFIKTLDLSFNELGQD-ISEILDIISACAAFE 324
           ++  L+L  N L       +          I  LDL +N+      SE     S   A  
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA-S 139

Query: 325 LESLFLRGCKISGQLTNQLG-----LFKNLHTLALSDNSVSGPLPPASGEL--------- 370
           + SL LRG  +  + +++L      +  N+++L L  N+++      +            
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA----SKNCAELAKFLASIP 195

Query: 371 SSLTYLDLSNNNLN--GMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLR 428
           +S+T LDLS N L               ELA+ +++  +              +++L L 
Sbjct: 196 ASVTSLDLSANLLGLKSYA---------ELAYIFSSIPN-------------HVVSLNLC 233

Query: 429 SCHLGP----HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLR 484
              L      +      S KHL  + +    + ++              P+       + 
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG--AAFPNI----QKII 287

Query: 485 VLNLGNNKFT--GSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFV 542
           +++    +     SIPIS      +R L+ +++  S        N   + A     N   
Sbjct: 288 LVDKNGKEIHPSHSIPIS----NLIRELSGKADVPS------LLNQCLIFAQKHQTNIED 337

Query: 543 GNIPTWMGERFSRLRILNLRSNKL 566
            NIP         LR        L
Sbjct: 338 LNIP-------DELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 52/332 (15%), Positives = 109/332 (32%), Gaps = 59/332 (17%)

Query: 29  IGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDL-----KHLNLLDLSGNDF 83
           +  +   E      N     V  LNL  + LG K +  LV +      ++  L+LSGN  
Sbjct: 34  LYSISTVELIQAFANTPA-SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92

Query: 84  --QGIQIPEYIGSM-----DNLRYLNLS----GAGFAGWIPHQLGNL-SNLMHLDLSGSY 131
             +       +          +  L+L      +  +        NL +++  L+L G+ 
Sbjct: 93  SYKSSD---ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN- 148

Query: 132 YELRVEDISWLAG-----PSLLEHLDTSDVDLIKA-----SDWLLVINSLPSLKVLKLFS 181
            +L ++    L       P+ +  L+    +L        + +L  I +  S+  L L +
Sbjct: 149 -DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA--SVTSLDLSA 205

Query: 182 CKL-----HHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSD---LVFLDLSSNIF 233
             L        A + S+  + + +L+L  N     S+ +          L  + L  +I 
Sbjct: 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265

Query: 234 RGPIPDG-------FKNLTSLRYLDLSYNQFN----STISDCFSNFD-DLEYLSLGYN-- 279
           +    +        F N+  +  +D +  + +      IS+         +  SL     
Sbjct: 266 KNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCL 325

Query: 280 --RLQGTISSIGLENLTFIKTLDLSFNELGQD 309
               +   +   L     ++    +   L + 
Sbjct: 326 IFAQKHQTNIEDLNIPDELRESIQTCKPLLEH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 68/389 (17%), Positives = 123/389 (31%), Gaps = 118/389 (30%)

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
             +T LDLS NN    +  I    L +            F           + +L L   
Sbjct: 22  HGVTSLDLSLNN----LYSISTVELIQA-----------FANTPA-----SVTSLNLSGN 61

Query: 431 HLGP----HFPSWL-HSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRV 485
            LG          L     +++ L++S   +S         ++              + V
Sbjct: 62  SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL---AAIPF-----TITV 113

Query: 486 LNLGNNKFT--GSIPISMG---TLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
           L+LG N F+   S            S+ SLNLR N L        ++  +L+ +      
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI------KSSDELIQILAAIP- 166

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHL-----SSLQILDVAYNRLSGSVP 595
                        + +  LNLR N L      ++        +S+  LD++ N L     
Sbjct: 167 -------------ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG---- 209

Query: 596 KCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISM 655
                                            E++ +         SI N V S+++ +
Sbjct: 210 ----------------------------LKSYAELAYIFS-------SIPNHVVSLNLCL 234

Query: 656 NNFSGE----IPMEVTNLKGLQSLNLSHNSF--IGK-----IPETIGNMRSIESLDLSGN 704
           N   G     + +   +LK LQ++ L ++    + K     +     N++ I  +D +G 
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

Query: 705 QISG----KIPQSMSSLSF-LNHLNLSDN 728
           +I       I   +  LS   +  +L + 
Sbjct: 295 EIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 42/326 (12%), Positives = 96/326 (29%), Gaps = 82/326 (25%)

Query: 440 LHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT--GSI 497
                 ++ LD+S   +  I       +               +  LNL  N      S 
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFAN--------TPASVTSLNLSGNSLGFKNSD 69

Query: 498 PIS---MGTLTSLRSLNLRSNRLS-----GIIPVPFENCSQLVALDMGENEF----VGNI 545
            +         ++ SLNL  N LS      ++         +  LD+G N+F        
Sbjct: 70  ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129

Query: 546 PTWMGERFSRLRILNLRSNKLHGIFPIQIC-----HLSSLQILDVAYNRLSGSVPKCINN 600
                   + +  LNLR N L      ++        +++  L++  N L+         
Sbjct: 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA--------- 180

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
                                       E++  +        + +    S+D+S N    
Sbjct: 181 -----------------------SKNCAELAKFLASI----PASV---TSLDLSANLLGL 210

Query: 661 E-----IPMEVTNLKGLQSLNLSHNSF----IGKIPETIGNMRSIESLDLSGNQISGKIP 711
           +       +  +    + SLNL  N      +  +     +++ ++++ L  + +     
Sbjct: 211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK 270

Query: 712 QSMSSL-------SFLNHLNLSDNKL 730
           +   +L         +  ++ +  ++
Sbjct: 271 EQCKALGAAFPNIQKIILVDKNGKEI 296

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 242 KNLTSLRYLDLSYNQFN-STISDCFSNFDDLEYLSLGYNRLQGTISSI-GLENLTFIKTL 299
           +   ++R L L   + N   I    + F +LE+LSL        + S+  L  L  +K L
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----LISVSNLPKLPKLKKL 76

Query: 300 DLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLT-NQLGLFKNLHTLALSDNS 358
           +LS N     I   LD+++      L  L L G K+    T   L   + L +L L +  
Sbjct: 77  ELSENR----IFGGLDMLAEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

Query: 359 VS 360
           V+
Sbjct: 132 VT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 2/117 (1%)

Query: 190 LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRY 249
           L +   +++  L L         I        +L FL L +             L  L+ 
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKK 75

Query: 250 LDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
           L+LS N+    +        +L +L+L  N+L+   +   L+ L  +K+LDL   E+
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 285 ISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLG 344
              +       ++ L L       +  +I  + +      LE L L    +   ++N L 
Sbjct: 15  HLELRNRTPAAVRELVLDNC--KSNDGKIEGLTAEFV--NLEFLSLINVGLI-SVSN-LP 68

Query: 345 LFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYAN 404
               L  L LS+N + G L   + +L +LT+L+LS N L  + +      L  L      
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 405 GNSV 408
              V
Sbjct: 129 NCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 50  LELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFA 109
           L L+  +S  G KI     +  +L  L L       +     +  +  L+ L LS     
Sbjct: 29  LVLDNCKSNDG-KIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIF 84

Query: 110 GWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASD-WLLVI 168
           G +      L NL HL+LSG+  +  +  +  L     L+ LD  + ++   +D    V 
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 143

Query: 169 NSLPSLKVL 177
             LP L  L
Sbjct: 144 KLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 656 NNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS 715
            +  G+I         L+ L+L +   +  +   +  +  ++ L+LS N+I G +     
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 716 SLSFLNHLNLSDNKL 730
            L  L HLNLS NKL
Sbjct: 93  KLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 21/156 (13%)

Query: 415 KWVPPFQLLALRLRSCHLG-PHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTI 473
           +   P  +  L L +C               +L  L + N  +  +             +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-----------SNL 67

Query: 474 PDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPV-PFENCSQLV 532
           P      P L+ L L  N+  G + +    L +L  LNL  N+L  I  + P +    L 
Sbjct: 68  PKL----PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123

Query: 533 ALDMGENEFVGNIP---TWMGERFSRLRILNLRSNK 565
           +LD+   E V N+      + +   +L  L+    +
Sbjct: 124 SLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 16/145 (11%)

Query: 114 HQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPS 173
            +    + +  L L         +     A    LE L   +V LI  S+    +  LP 
Sbjct: 18  LRNRTPAAVRELVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISVSN----LPKLPK 72

Query: 174 LKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIF 233
           LK L+L   ++     + +    +L  L+LSGN     S    +  L  L  LDL +   
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-- 130

Query: 234 RGPIPDG-------FKNLTSLRYLD 251
              + +        FK L  L YLD
Sbjct: 131 --EVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 668 NLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISG-KIPQSMSSLSFLNHLNLS 726
            L  L+ L LS N   G +      + ++  L+LSGN++      + +  L  L  L+L 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 727 DN 728
           + 
Sbjct: 129 NC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 503 TLTSLRSLNLRSNRLSGI-IPVPFENCSQLVALDMGENEF--VGNIPTWMGERFSRLRIL 559
           T  ++R L L + + +   I         L  L +       V N+P     +  +L+ L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKLKKL 76

Query: 560 NLRSNKLHGIFPIQICHLSSLQILDVAYNRLS 591
            L  N++ G   +    L +L  L+++ N+L 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 84/533 (15%), Positives = 153/533 (28%), Gaps = 94/533 (17%)

Query: 48  HVLELNLERSELGGKINPALVDL----KHLNLLDLSGNDFQGIQIPEYIGS-MDNLRYLN 102
                NL     GG + P + ++    + L  +         + +     +  D+L  L 
Sbjct: 85  RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144

Query: 103 LSG-AGFAGWIPHQLG-NLSNLMHLDLSGSYYELRVEDISWLA----GPSLLEHLDTSDV 156
           L   +GF       +  +   +  L +  S      +D  WL       + LE L+    
Sbjct: 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESS--FSEKDGKWLHELAQHNTSLEVLNFYMT 202

Query: 157 DLIKASDWLL--VINSLPSLKVLKLFSCKLHHFAPL--ASANFSSLNALDLSGNLFGKTS 212
           +  K S   L  +  +  SL  +K+   ++        A+AN        L+ ++     
Sbjct: 203 EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI----G 258

Query: 213 IPSWVFGLSDLVFLDLS--SNIFRGPIPDGFKNLTSLRYLDLSYNQFNS-TISDCFSNFD 269
           +P     L     L     S +    +P  F     +R LDL Y    +           
Sbjct: 259 MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318

Query: 270 DLEYLSLGYNRLQGTISSIGLE----NLTFIKTLDLSFNELGQDISEILDIIS------- 318
           +LE L       +  I   GLE        +K L +      Q + +   ++S       
Sbjct: 319 NLEVLET-----RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373

Query: 319 ACAAFELESLFLRGCKISGQ----LTNQLGLFKNLHTLALSDNSVSGPLPPASG------ 368
           A    ELE + +    I+ +    +   L    +   + L        LP  +G      
Sbjct: 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433

Query: 369 ELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLR 428
               L                   G LT+L   Y    S N            +  + L 
Sbjct: 434 GCKKLRRFAFYLRQ----------GGLTDLGLSYIGQYSPN------------VRWMLLG 471

Query: 429 SCHLG-PHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLN 487
                      +     +L KL++     S+              I       P LR L 
Sbjct: 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSE------------RAIAAAVTKLPSLRYLW 519

Query: 488 LGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGI-------IPVPFENCSQLVA 533
           +   + + +    M    +    N+       +            E+ + ++A
Sbjct: 520 VQGYRASMTGQDLMQ--MARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILA 570

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.6 bits (131), Expect = 8e-08
 Identities = 70/487 (14%), Positives = 134/487 (27%), Gaps = 72/487 (14%)

Query: 120 SNLMHLDLSG----SYYELRVEDISWLAGPSL---------LEHLDTSDVDLIKASDWLL 166
            NL  L L G    + + L  E+      P +         L+ +    + +       L
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132

Query: 167 VINSLPSLKVLKLFSCK------LHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGL 220
                  L+ LKL  C       L         +   +  L +  + F +     W+  L
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIV----THCRKIKTLLMEESSFSEKDGK-WLHEL 187

Query: 221 SD----LVFLDLSSNIFRGPIPDG----FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE 272
           +     L  L+     F    P       +N  SL  + +   +    +   F    +LE
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLE 246

Query: 273 YLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRG 332
               G       +    +  +   K   L  + +G +  E+  +    A   +  L L  
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN--EMPILFPFAAQ--IRKLDLLY 302

Query: 333 C-KISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIH 391
               +      +    NL  L   +      L   +     L  L +     +    E  
Sbjct: 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGA-DEQGMEDE 361

Query: 392 FGNLTELAFFY-ANGNSVNFKINSKWVPPFQLLALRLRSCHLGP----HFPSWLHSQKHL 446
            G +++      A G               +L  + +    +         ++L +    
Sbjct: 362 EGLVSQRGLIALAQGCQ-------------ELEYMAVYVSDITNESLESIGTYLKNLCDF 408

Query: 447 SKLDISN-TRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNL--GNNKFTGSIPISMGT 503
             + +    RI+D+       S+              LR           T      +G 
Sbjct: 409 RLVLLDREERITDLPLDNGVRSLLI--------GCKKLRRFAFYLRQGGLTDLGLSYIGQ 460

Query: 504 L-TSLRSLNLRSNRLS--GIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN 560
              ++R + L     S  G++      C  L  L+M    F          +   LR L 
Sbjct: 461 YSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519

Query: 561 LRSNKLH 567
           ++  +  
Sbjct: 520 VQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 85/608 (13%), Positives = 170/608 (27%), Gaps = 110/608 (18%)

Query: 153 TSDVDLIKAS----DWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLF 208
           T   D   AS     W  + +   + + + +  C         S  F +L +L L G   
Sbjct: 29  TDPKDRDSASLVCRRWFKIDSE--TREHVTMALC-YTATPDRLSRRFPNLRSLKLKG--- 82

Query: 209 GKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISD----- 263
                      + +L+  +    +    + +   NL  L+ +          +SD     
Sbjct: 83  ------KPRAAMFNLIPENWGGYVTPW-VTEISNNLRQLKSVHFR----RMIVSDLDLDR 131

Query: 264 -CFSNFDDLEYLSLGYNRLQGTISSIGLENL----TFIKTLDLSFNELGQDISEILDIIS 318
              +  DDLE L L         ++ GL ++      IKTL +  +   +   + L  ++
Sbjct: 132 LAKARADDLETLKLDKCSG---FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 319 ACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDL 378
                 LE L     + +                 +S   +            SL  + +
Sbjct: 189 QHNT-SLEVLNFYMTEFAK----------------ISPKDLETIAR----NCRSLVSVKV 227

Query: 379 SNNNLNGMISEIHFG-NLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFP 437
            +  +  ++       NL E      N +    +     V P +L  L L         P
Sbjct: 228 GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMP 286

Query: 438 SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSI 497
                   + KLD+    +              +         P+L VL   N      +
Sbjct: 287 ILFPFAAQIRKLDLLYALLET------------EDHCTLIQKCPNLEVLETRNVIGDRGL 334

Query: 498 PISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQ--LVALDMGENEFVGNIPTWMGERFSR 555
            +       L+ L +        +       SQ  L+AL                +    
Sbjct: 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL---------------AQGCQE 379

Query: 556 LRILNLRSNKL--HGIFPI--QICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHH 611
           L  + +  + +    +  I   + +L   +++ +        +P   N   ++       
Sbjct: 380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD-NGVRSLLIGCKKL 438

Query: 612 QVKAIYHASFE-NDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE-IPMEVTNL 669
           +  A Y       D  +  I                 VR + +     S E +       
Sbjct: 439 RRFAFYLRQGGLTDLGLSYIG-----------QYSPNVRWMLLGYVGESDEGLMEFSRGC 487

Query: 670 KGLQSLNLSHNSFIGK-IPETIGNMRSIESLDLSGNQIS----GKIPQSMSSLSFLNHLN 724
             LQ L +    F  + I   +  + S+  L + G + S      +  +    + +  + 
Sbjct: 488 PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN-IELIP 546

Query: 725 LSDNKLVG 732
                 V 
Sbjct: 547 SRRVPEVN 554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 44/317 (13%), Positives = 88/317 (27%), Gaps = 44/317 (13%)

Query: 63  INPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGA-GFAGWIPHQLGNLSN 121
           + P    ++ L+LL           +   I    NL  L      G  G +         
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTL---IQKCPNLEVLETRNVIGDRG-LEVLAQYCKQ 343

Query: 122 LMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFS 181
           L  L +     E  +ED   L     L  L                      L+ + ++ 
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQRGLIAL----------------AQGCQELEYMAVYV 387

Query: 182 CK-----LHHFAPLASANFSSLNALDLSG-----NLFGKTSIPSWVFGLSDLVFLDLSSN 231
                  L         N      + L       +L     + S + G   L        
Sbjct: 388 SDITNESLESIG-TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

Query: 232 IFRGPIPD-GF----KNLTSLRYLDLSYNQF-NSTISDCFSNFDDLEYLSLGYNRLQGTI 285
             +G + D G     +   ++R++ L Y    +  + +      +L+ L +         
Sbjct: 447 --QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504

Query: 286 SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGL 345
            +  +  L  ++ L +          +++ +      + +E +  R      Q      +
Sbjct: 505 IAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY--WNIELIPSRRVPEVNQQGEIREM 562

Query: 346 FKNLHTLALSDNSVSGP 362
               H LA    S++G 
Sbjct: 563 EHPAHILAY--YSLAGQ 577

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 32/221 (14%)

Query: 195 FSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY 254
           F+     +L       T   +    L+ +  +  +++  +     G + L ++RYL L  
Sbjct: 18  FAETIKANLKKKSV--TDAVTQN-ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGG 72

Query: 255 NQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEIL 314
           N+ +           +L YL L  N+LQ ++ +   + LT +K L L  N+L      + 
Sbjct: 73  NKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129

Query: 315 DIISACAAFELESLFLRGCKISGQLTNQL-----GLFK---NLHTLALSDNSVSGPLPP- 365
           D ++      L  L L          NQL     G+F    NL  L LS N +   LP  
Sbjct: 130 DKLT-----NLTYLNLA--------HNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEG 175

Query: 366 ASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGN 406
              +L+ L  L L  N L   + +  F  LT L + + + N
Sbjct: 176 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 41/206 (19%)

Query: 191 ASANFSSLNALDLSGN-LFGKTSIPSWVFGLSDLVFLDLSSN-IFRGPIPDGFKNLTSLR 248
                +S++ +  + + +     I      L ++ +L L  N +         K LT+L 
Sbjct: 36  TQNELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLHDISA---LKELTNLT 88

Query: 249 YLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQ 308
           YL L+ NQ  S  +  F    +L+ L L  N+LQ ++     + LT +  L+L+ N+L  
Sbjct: 89  YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS 147

Query: 309 DISEILDIISACAAFELESLFLRGCKISGQLTNQL-----GLFK---NLHTLALSDN--- 357
               + D ++      L  L L          NQL     G+F     L  L L  N   
Sbjct: 148 LPKGVFDKLT-----NLTELDLS--------YNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 358 SVSGPLPP--ASGELSSLTYLDLSNN 381
           SV     P      L+SL Y+ L +N
Sbjct: 195 SV-----PDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
           ++R L LG NK    I   +  LT+L  L L  N+L  +    F+  + L  L + EN+ 
Sbjct: 64  NVRYLALGGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121

Query: 542 VGNIPTWMGERFSRLRILNLRSNKL----HGIFPIQICHLSSLQILDVAYNRLSGSVPK 596
             ++P  + ++ + L  LNL  N+L     G+F      L++L  LD++YN+L  S+P+
Sbjct: 122 Q-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD----KLTNLTELDLSYNQLQ-SLPE 174

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 13/113 (11%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
            +  +   N+       I    L ++R L L  N+L   I    +  + L  L +  N+ 
Sbjct: 42  SIDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKLHD-ISA-LKELTNLTYLILTGNQL 97

Query: 542 VGNIPTWMGERFSRLRILNLRSNKL----HGIFPIQICHLSSLQILDVAYNRL 590
             ++P  + ++ + L+ L L  N+L     G+F      L++L  L++A+N+L
Sbjct: 98  Q-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFD----KLTNLTYLNLAHNQL 145

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 211 TSIPSWVFGL-SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFD 269
             +P    G+  D+  L L  N F   +P    N   L  +DLS N+ ++  +  FSN  
Sbjct: 23  KVLPK---GIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78

Query: 270 DLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
            L  L L YNRL+  I     + L  ++ L L  N++
Sbjct: 79  QLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 189 PLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTS 246
           P   +N+  L  +DLS N    +++ +  F  ++ L+ L LS N  R  IP   F  L S
Sbjct: 47  PKELSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKS 103

Query: 247 LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
           LR L L  N  +      F++   L +L++G N
Sbjct: 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
           D+  L L  N+FT  +P  +     L  ++L +NR+S +    F N +QL+ L +  N  
Sbjct: 32  DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 542 VGNIPTWMGERFSRLRILNLRSNKL----HGIFPIQICHLSSLQ 581
              IP    +    LR+L+L  N +     G F      LS+L 
Sbjct: 91  -RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN----DLSALS 129

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVF 225
            +++   L ++ L + ++   +  + +N + L  L LS N      IP   F GL  L  
Sbjct: 49  ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL--RCIPPRTFDGLKSLRL 106

Query: 226 LDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLS 275
           L L  N     +P+G F +L++L +L +  N       DC     ++++LS
Sbjct: 107 LSLHGNDISV-VPEGAFNDLSALSHLAIGANPLY---CDC-----NMQWLS 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 175 KVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIF 233
           ++L L   ++    P    +  +L  L L  N     ++P  VF  L+ L  LDL +N  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQL 100

Query: 234 RGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLEN 292
              +P   F  L  L+ L +  N+    +         L +L+L  N+L+ +I     + 
Sbjct: 101 TV-LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAFDR 157

Query: 293 LTFIKTLDLSFN 304
           L+ +    L  N
Sbjct: 158 LSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 33/171 (19%)

Query: 211 TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270
            S+P+ +   ++   L L  N      P  F +L +L+ L L  NQ  +     F +   
Sbjct: 32  ASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89

Query: 271 LEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFL 330
           L  L LG N+L    S++  + L  +K L +  N+L  ++   ++               
Sbjct: 90  LTVLDLGTNQLTVLPSAV-FDRLVHLKELFMCCNKL-TELPRGIE--------------- 132

Query: 331 RGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNN 381
                  +LT       +L  LAL  N +      A   LSSLT+  L  N
Sbjct: 133 -------RLT-------HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 13/133 (9%)

Query: 496 SIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555
           S+P   G  T+ + L L  N+++ + P  F++   L  L +G N+    +P  + +  ++
Sbjct: 33  SVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89

Query: 556 LRILNLRSNKL----HGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHH 611
           L +L+L +N+L      +F      L  L+ L +  N+L+  +P+ I   T +  +    
Sbjct: 90  LTVLDLGTNQLTVLPSAVFD----RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144

Query: 612 -QVKAIYHASFEN 623
            Q+K+I H +F+ 
Sbjct: 145 NQLKSIPHGAFDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 3/115 (2%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
           + ++L L +N+ T   P    +L +L+ L L SN+L  +    F++ +QL  LD+G N+ 
Sbjct: 41  NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ- 99

Query: 542 VGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK 596
           +  +P+ + +R   L+ L +  NKL  + P  I  L+ L  L +  N+L  S+P 
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLK-SIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 40/165 (24%), Positives = 59/165 (35%), Gaps = 38/165 (23%)

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
           T+ + L L  NQ        F +  +L+ L LG N+L   +     ++LT +  LDL  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98

Query: 305 ELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF---KNLHTLALSDNSVSG 361
           +L                     L                +F    +L  L +  N ++ 
Sbjct: 99  QL-------------------TVL-------------PSAVFDRLVHLKELFMCCNKLTE 126

Query: 362 PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGN 406
            LP     L+ LT+L L  N L   I    F  L+ L   Y  GN
Sbjct: 127 -LPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 201 LDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFN 258
           L L+ N  G+ S    +F  L  LV L+L  N   G I    F+  + ++ L L  N+  
Sbjct: 34  LLLNDNELGRIS-SDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIK 91

Query: 259 STISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
              +  F     L+ L+L  N++   +     E+L  + +L+L+ N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 211 TSIPSWVFGL-SDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNF 268
             IP     +      L L+ N       DG F  L  L  L+L  NQ      + F   
Sbjct: 21  KEIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77

Query: 269 DDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
             ++ L LG N+++  IS+     L  +KTL+L  N++
Sbjct: 78  SHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI 114

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 482 DLRVLNLGNNKFTGSIPISM-GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
               L L +N+        + G L  L  L L+ N+L+GI P  FE  S +  L +GEN+
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKL----HGIFPIQICHLSSLQIL 583
               I   M     +L+ LNL  N++     G F     HL+SL  L
Sbjct: 90  I-KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE----HLNSLTSL 131

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVF 225
           +   LP L  L+L   +L    P A    S +  L L  N      I + +F GL  L  
Sbjct: 49  LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI--KEISNKMFLGLHQLKT 106

Query: 226 LDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFN 258
           L+L  N     +  G F++L SL  L+L+ N FN
Sbjct: 107 LNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFN 139

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.7 bits (120), Expect = 9e-07
 Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 15/166 (9%)

Query: 230 SNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRL-QGTISSI 288
           S I +  +      +  L  L +      + +S       +L+ L +    L    +  I
Sbjct: 157 SWIEQVDLSPVLDAMPLLNNLKIK---GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDI 213

Query: 289 GLENLTFIKTLDLSF--NELGQD--ISEILDIISACAAFELESLFLRGCKISGQLTNQLG 344
              +L  ++ L L     + G D  ++    + S      L+ L +   +    +     
Sbjct: 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273

Query: 345 ---LFKNLHTLALSDNSVSG----PLPPASGELSSLTYLDLSNNNL 383
              +   L T+ +S   ++      L     ++  L ++++  N L
Sbjct: 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.8 bits (115), Expect = 4e-06
 Identities = 29/216 (13%), Positives = 76/216 (35%), Gaps = 30/216 (13%)

Query: 111 WIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDT----SDVDLIKASDWLL 166
            I       ++   L       +   ++ISW+    L   LD     +++ +   ++  +
Sbjct: 130 GIVENKEKFAHFEGLFWGDI--DFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187

Query: 167 VINSLPSLKVLKLFSCKLHHFAP--LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLV 224
                P+LK L++ S  L       +  ++  +L  L L            +   ++   
Sbjct: 188 GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVG----VEDYGFDGDMNVF- 242

Query: 225 FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFD---DLEYLSLGYNRL 281
                  +F            +L++L +   +  + + + F   D    LE + +    L
Sbjct: 243 -----RPLFSKD------RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291

Query: 282 QGTISSI---GLENLTFIKTLDLSFNELGQDISEIL 314
               + +    ++ +  +K +++ +N L  ++ + L
Sbjct: 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 6e-06
 Identities = 31/202 (15%), Positives = 60/202 (29%), Gaps = 49/202 (24%)

Query: 61  GKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLG--N 118
             ++P L  +  LN L + G +   I          NL+ L +   G    +   +   +
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPR----PNLKSLEIISGGLPDSVVEDILGSD 217

Query: 119 LSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLK 178
           L NL  L L      + VED  +    ++   L                 +  P+LK L 
Sbjct: 218 LPNLEKLVLY-----VGVEDYGFDGDMNVFRPL--------------FSKDRFPNLKWLG 258

Query: 179 LFSCKLHHFAPLASANF---SSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRG 235
           +   +  +              L  +D+S  +                            
Sbjct: 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR--------------------- 297

Query: 236 PIPDGFKNLTSLRYLDLSYNQF 257
            + D    +  L+++++ YN  
Sbjct: 298 LLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 3e-04
 Identities = 12/94 (12%), Positives = 34/94 (36%), Gaps = 14/94 (14%)

Query: 651 IDISMNNFSGEIPMEV-------TNLKGLQSLNLSHNSFIGKIPETIGN---MRSIESLD 700
           + + + ++  +  M V            L+ L +        + E       +  +E++D
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285

Query: 701 LSGNQISGK----IPQSMSSLSFLNHLNLSDNKL 730
           +S   ++ +    +   +  +  L  +N+  N L
Sbjct: 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 28/176 (15%), Positives = 56/176 (31%), Gaps = 20/176 (11%)

Query: 429 SCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNL 488
              +            H   L   +    +    W    I Q  +       P L  L +
Sbjct: 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISW----IEQVDLSPVLDAMPLLNNLKI 179

Query: 489 GNNKFTGSIPISMGTLTSLRSLNLRSNRLS--GIIPVPFENCSQLVALDM--GENEFVGN 544
              K T ++ I      +L+SL + S  L    +  +   +   L  L +  G  ++  +
Sbjct: 180 ---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236

Query: 545 I------PTWMGERFSRLRILNLRSNKLHGIFPIQICH---LSSLQILDVAYNRLS 591
                  P +  +RF  L+ L +   +   +          L  L+ +D++   L+
Sbjct: 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 201 LDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFN 258
           L+L  N     S+P  VF  L+ L  L LS N  +  +PDG F  LT L  L L  N+  
Sbjct: 33  LELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQ 89

Query: 259 STISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
           S  +  F     L+ L+L  N+L+ ++     + LT ++ + L  N
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 211 TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270
           TS+P+ +   S    L+L SN  +      F  LT L  L LS NQ  S     F     
Sbjct: 20  TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77

Query: 271 LEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
           L  L L  N+LQ ++ +   + LT +K L L  N+L
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
               L L +NK           LT L  L+L  N++  +    F+  ++L  L + EN+ 
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88

Query: 542 VGNIPTWMGERFSRLRILNLRSNKL----HGIFPIQICHLSSLQ 581
             ++P  + ++ ++L+ L L +N+L     GIF      L+SLQ
Sbjct: 89  -QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD----RLTSLQ 127

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 45/255 (17%), Positives = 85/255 (33%), Gaps = 45/255 (17%)

Query: 113 PHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLP 172
           P   G L +   +           + ++    P  ++H+D S+  +I+ S    +++   
Sbjct: 61  PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSN-SVIEVSTLHGILSQCS 118

Query: 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNI 232
            L+ L L   +L        A  S+L  L+LSG             G S+     L S  
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG-----------CSGFSEFALQTLLS-- 165

Query: 233 FRGPIPDGFKNLTSLRYLDLSYNQFNSTISD------CFSNFDDLEYLSLGYNRLQGTIS 286
                     + + L  L+LS+       ++           + +  L+L  +  +  + 
Sbjct: 166 ----------SCSRLDELNLSW---CFDFTEKHVQVAVAHVSETITQLNL--SGYRKNLQ 210

Query: 287 SIGL----ENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGC-KISGQLTN 341
              L         +  LDLS + + ++               L+ L L  C  I  +   
Sbjct: 211 KSDLSTLVRRCPNLVHLDLSDSVMLKNDC--FQEFFQLNY--LQHLSLSRCYDIIPETLL 266

Query: 342 QLGLFKNLHTLALSD 356
           +LG    L TL +  
Sbjct: 267 ELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 47/288 (16%), Positives = 89/288 (30%), Gaps = 52/288 (18%)

Query: 24  HLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDL--------KHLNL 75
                  D    +   +   N+   V    L +  +  +   + +D           +  
Sbjct: 38  RWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH 97

Query: 76  LDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELR 135
           +DLS +  +   +   +     L+ L+L G   +  I + L   SNL+ L+LSG      
Sbjct: 98  MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC-SGFS 156

Query: 136 VEDISWLA-GPSLLEHLDTSDVDLIKASDWLLVI-NSLPSLKVLKLFSCKL----HHFAP 189
              +  L    S L+ L+ S           + + +   ++  L L   +        + 
Sbjct: 157 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216

Query: 190 LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRY 249
           L      +L  LDLS ++            L +  F +                L  L++
Sbjct: 217 LVR-RCPNLVHLDLSDSV-----------MLKNDCFQEFF-------------QLNYLQH 251

Query: 250 LDLSYNQFNSTISD----CFSNFDDLEYLSLGYNRLQGTISSIGLENL 293
           L LS       I             L+ L     ++ G +    L+ L
Sbjct: 252 LSLSR---CYDIIPETLLELGEIPTLKTL-----QVFGIVPDGTLQLL 291

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 10/119 (8%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
               L+L  N            LTSL  L L  N+L  +    F   + L  L++  N+ 
Sbjct: 29  QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88

Query: 542 VGNIPTWMGERFSRLRILNLRSNKL----HGIFPIQICHLSSLQILDVAYNRLSGSVPK 596
             ++P  + ++ ++L+ L L +N+L     G+F      L+ L+ L +  N+L  SVP 
Sbjct: 89  Q-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFD----KLTQLKDLRLYQNQLK-SVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 32/173 (18%)

Query: 209 GKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNF 268
           G+TS+P+ +   +   +LDL +N  +      F  LTSL  L L  N+  S  +  F+  
Sbjct: 18  GRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75

Query: 269 DDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESL 328
             L YL+L  N+LQ   + +  + LT +K L L+ N+L Q + +          F+    
Sbjct: 76  TSLTYLNLSTNQLQSLPNGV-FDKLTQLKELALNTNQL-QSLPD--------GVFD---- 121

Query: 329 FLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNN 381
                    +LT        L  L L  N +          L+SL Y+ L +N
Sbjct: 122 ---------KLT-------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 42/163 (25%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
               YLDL  N   S  +  F     L  L LG N+LQ ++ +     LT +  L+LS N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86

Query: 305 ELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLP 364
           +L    + + D                      +LT        L  LAL+ N +   LP
Sbjct: 87  QLQSLPNGVFD----------------------KLTQ-------LKELALNTNQLQS-LP 116

Query: 365 P-ASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGN 406
                +L+ L  L L  N L   + +  F  LT L + + + N
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 47/296 (15%), Positives = 87/296 (29%), Gaps = 48/296 (16%)

Query: 119 LSNLMHLDLSGSYYELRVEDISWLA-----GPSLLEHLDTSDVDLIKASDWLLVINSLPS 173
           LS+L  L+L+G    +     + +A     G   L+ ++ +    +  +    ++     
Sbjct: 71  LSSLRQLNLAGV--RMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLR 127

Query: 174 LKVLKLFSCKL-----HHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSD---LVF 225
            + L L    L          L   +   +  L LS N      +   + GL+    +  
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 226 LDLSSNIFRGP----IPDGFKNLTSLRYLDLSYNQFNST----ISDCFSNFDDLEYLSLG 277
           L L            +         L+ L+++YN    T    ++        LE L L 
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247

Query: 278 YNRLQGT----ISSIG--LENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLR 331
           +N L       +  +G   E    +         + +  S IL            S   R
Sbjct: 248 FNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVIL------------SEVQR 295

Query: 332 GCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGEL----SSLTYLDLSNNNL 383
                 +   Q  L   L    L D+  +   P    +L      +  L     + 
Sbjct: 296 NLNSWDRARVQRHL--ELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 53/377 (14%), Positives = 108/377 (28%), Gaps = 76/377 (20%)

Query: 242 KNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDL 301
           KNL +L        +            + L++L   Y   Q        E L+ ++ L+L
Sbjct: 23  KNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYE-FQNQ--RFSAEVLSSLRQLNL 79

Query: 302 SFNELG-QDISEILDIISACAAFELESLFLRGCKISGQLTNQLG-LFKNLHTLALSDNSV 359
           +   +     + +  ++ +     L+ + L  C++       L  +F     L L  NS+
Sbjct: 80  AGVRMTPVKCTVVAAVLGSGRH-ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138

Query: 360 SGPLPPASGEL---------SSLTYLDLSNNNLNGMISEIHFGNLTELAFFY-ANGNSVN 409
                P + +            +T L LSNN             LT         G + N
Sbjct: 139 G----PEACKDLRDLLLHDQCQITTLRLSNN------------PLTAAGVAVLMEGLAGN 182

Query: 410 FKINSKWVPPFQLLALRLRSCHLGP----HFPSWLHSQKHLSKLDISNTRISDIIPRWFW 465
                       +  L L    LG        + L   + L +L+++     D       
Sbjct: 183 TS----------VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232

Query: 466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFT-------GSIPISMGTLTSLRSLNLRSNRLS 518
            +  +            L +L+L  N+ +         +  +      +         +S
Sbjct: 233 RAAREHPS---------LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283

Query: 519 GIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHL- 577
                  E  S +++                 +R   L + +L  ++   + P +   L 
Sbjct: 284 -------EYWSVILSEVQRNLNSWDRA---RVQRHLELLLRDLEDSRGATLNPWRKAQLL 333

Query: 578 ---SSLQILDVAYNRLS 591
                ++ L        
Sbjct: 334 RVEGEVRALLEQLGSSG 350

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 8/162 (4%)

Query: 579 SLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFM 638
           + +ILD    R+S  +       T +  +                 Y   + +L +KG  
Sbjct: 81  NYKILDRENRRISIIINSSAPPHTILNELKPEQ--VEQLKLIMSKRYDGSQQALDLKGLR 138

Query: 639 VEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHN--SFIGKIPETIGNMRSI 696
            + + +   +  +    +  +  + +   N+  L SLNLS+N    +  +   +    ++
Sbjct: 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL 198

Query: 697 ESLDLSGNQISGKIPQSMSSLSFLN--HLNLSDNKLVGKIPS 736
           + L+LSGN++  K  + +  +  L    L L  N L      
Sbjct: 199 KILNLSGNEL--KSERELDKIKGLKLEELWLDGNSLCDTFRD 238

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 196 SSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLS 253
           ++   L L  N    T +   VF  L+ L  LDL +N     +P G F  LT L  L L+
Sbjct: 30  TTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLN 86

Query: 254 YNQFNSTISDCFSNFDDLEYLSLGYN 279
            NQ  S     F N   L ++ L  N
Sbjct: 87  DNQLKSIPRGAFDNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 201 LDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFN 258
           L L+ N    T +   VF  L +L  L  +SN     IP G F  LT L  LDL+ N   
Sbjct: 38  LWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK 94

Query: 259 STISDCFSNFDDLEYLSLGYN 279
           S     F N   L ++ L  N
Sbjct: 95  SIPRGAFDNLKSLTHIYLYNN 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	790
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.66
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.64
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.58
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.5
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.47
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.41
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.39
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.39
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.34
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.3
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.21
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.12
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.99
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.95
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.89
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.82
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.67
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.55
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.97
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.91
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.86
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.01
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.94
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.38
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.75

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.2e-80  Score=722.58  Aligned_cols=710  Identities=29%  Similarity=0.415  Sum_probs=504.3

Q ss_pred             hHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcccCceeecCCCCcEEEEEcCCCCCCcc---ccccCcCCCCCCEEeCCC
Q 047929            4 LESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGK---INPALVDLKHLNLLDLSG   80 (790)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~---~~~~l~~l~~L~~L~Ls~   80 (790)
                      .+.|+.||++||+++.||. ++++|..+++||.|.||.|+  .++|++|+|+++.+.+.   +|+++.++++|+.++++.
T Consensus        10 ~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~   86 (768)
T 3rgz_A           10 LYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN   86 (768)
T ss_dssp             HHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTT
T ss_pred             CHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcC
Confidence            4579999999999999998 99999766899999999998  68999999999999988   889999999999999999


Q ss_pred             CCCCCCCcCccccCCCCCCEEeCCCCcccccCCC--CCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCC
Q 047929           81 NDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPH--QLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDL  158 (790)
Q Consensus        81 ~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~--~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  158 (790)
                      +.+.  .+|+.++++++|++|+|++|.+.+.+|.  .++++++|++|++++|.+..... ...+.++++|++|+++++.+
T Consensus        87 ~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~l  163 (768)
T 3rgz_A           87 SHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK-VSGGLKLNSLEVLDLSANSI  163 (768)
T ss_dssp             SCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS-CCSCCCCTTCSEEECCSSCC
T ss_pred             CCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCC-HHHhccCCCCCEEECCCCcc
Confidence            9876  4678999999999999999999988888  89999999999999997642211 11224566666666666665


Q ss_pred             CCC-chhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCC
Q 047929          159 IKA-SDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPI  237 (790)
Q Consensus       159 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~  237 (790)
                      .+. +.....+.++++|++|++++|.+....+.  ..+++|++|++++|.+.+ .+|. +..+++|++|++++|.+.+.+
T Consensus       164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~-~~~~-l~~l~~L~~L~Ls~n~l~~~~  239 (768)
T 3rgz_A          164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFST-GIPF-LGDCSALQHLDISGNKLSGDF  239 (768)
T ss_dssp             EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCS-CCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred             CCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCC-CCcc-cccCCCCCEEECcCCcCCCcc
Confidence            544 22112255556666666665555543322  445555555555555543 2333 455555555555555555445


Q ss_pred             CccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhh
Q 047929          238 PDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDII  317 (790)
Q Consensus       238 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  317 (790)
                      |..+..+++|++|++++|.+.+..|..  .+++|++|++++|.+.+.+|......++                       
T Consensus       240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~-----------------------  294 (768)
T 3rgz_A          240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD-----------------------  294 (768)
T ss_dssp             HHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT-----------------------
T ss_pred             cHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC-----------------------
Confidence            555555555555555555554443332  4455555555555554444443122224                       


Q ss_pred             hccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcC-cCCCCCCCEEECcCCcCCCcCChhhhcccc
Q 047929          318 SACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA-SGELSSLTYLDLSNNNLNGMISEIHFGNLT  396 (790)
Q Consensus       318 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  396 (790)
                            +|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+. .+..++
T Consensus       295 ------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~  367 (768)
T 3rgz_A          295 ------TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLS  367 (768)
T ss_dssp             ------TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-THHHHT
T ss_pred             ------cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-HHHhhh
Confidence                  4555555555554445555555555555555555554444433 45555555555555555443333 233443


Q ss_pred             -ccceeecCCCcceeecCCCCCC--cccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccC
Q 047929          397 -ELAFFYANGNSVNFKINSKWVP--PFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTI  473 (790)
Q Consensus       397 -~L~~l~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~  473 (790)
                       +|+.++++.|.+....+..+..  +++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.             +
T Consensus       368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-------------~  434 (768)
T 3rgz_A          368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-------------I  434 (768)
T ss_dssp             TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC-------------C
T ss_pred             cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc-------------c
Confidence             5555555555555555544443  66778888888887777888888888888888888886643             4


Q ss_pred             CCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcC
Q 047929          474 PDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERF  553 (790)
Q Consensus       474 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~  553 (790)
                      |..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.+|.++. .+
T Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l  513 (768)
T 3rgz_A          435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RL  513 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GC
T ss_pred             cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cC
Confidence            45567778888899998888888888888888899999999988888888888888999999999988888888775 68


Q ss_pred             CCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeec---------------
Q 047929          554 SRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYH---------------  618 (790)
Q Consensus       554 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~---------------  618 (790)
                      ++|++|++++|++++..|..++.+++|+.|++++|++.+.+|..+.....+............+.               
T Consensus       514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (768)
T 3rgz_A          514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL  593 (768)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence            88999999999988888888888899999999999988888887766555443321110000000               


Q ss_pred             --------cc---ccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCC
Q 047929          619 --------AS---FENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIP  687 (790)
Q Consensus       619 --------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  687 (790)
                              ..   ...............+........++.|+.|||++|++++.+|..++.+++|++|+|++|.+++.+|
T Consensus       594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence                    00   0000000000000111112233446789999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcCCccCCccccCC-cccCCCCCCCCcccc
Q 047929          688 ETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAPLSNCTEKNV  766 (790)
Q Consensus       688 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~~~~c~~~~~  766 (790)
                      ..|+.+++|+.||+++|++++.+|..+..+++|++|++++|++.|.+|..+++.++...++.|| .+||.|+..|...+.
T Consensus       674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~  753 (768)
T 3rgz_A          674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA  753 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-
T ss_pred             hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999 899999989976665


Q ss_pred             ccc
Q 047929          767 LAL  769 (790)
Q Consensus       767 ~~~  769 (790)
                      ..+
T Consensus       754 ~~~  756 (768)
T 3rgz_A          754 DGY  756 (768)
T ss_dssp             ---
T ss_pred             CCC
Confidence            433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.3e-65  Score=593.81  Aligned_cols=634  Identities=27%  Similarity=0.352  Sum_probs=481.8

Q ss_pred             CCCCEEeCCCCCCCCC--CcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCC
Q 047929           71 KHLNLLDLSGNDFQGI--QIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLL  148 (790)
Q Consensus        71 ~~L~~L~Ls~~~~~~~--~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L  148 (790)
                      .+++.|+|+++.+.+.  .+|..+.++++|+.++++.+.+.. +|..++++++|++|++++|.+.........++++++|
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  128 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL  128 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence            5789999999988752  167889999999999999998865 7889999999999999999865333333345555555


Q ss_pred             cEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccC-cCCCCCCEEECCCCCCCCCCcchh---ccCCCCCc
Q 047929          149 EHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLAS-ANFSSLNALDLSGNLFGKTSIPSW---VFGLSDLV  224 (790)
Q Consensus       149 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~l~~~~lp~~---l~~l~~L~  224 (790)
                      ++|++++|.+.                          ...+..+ .++++|++|++++|.+.+ ..|..   +..+++|+
T Consensus       129 ~~L~Ls~n~l~--------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~l~~L~  181 (768)
T 3rgz_A          129 KFLNVSSNTLD--------------------------FPGKVSGGLKLNSLEVLDLSANSISG-ANVVGWVLSDGCGELK  181 (768)
T ss_dssp             CEEECCSSEEE--------------------------CCSSCCSCCCCTTCSEEECCSSCCEE-ETHHHHHHTTCCTTCC
T ss_pred             CEEECcCCccC--------------------------CcCCHHHhccCCCCCEEECCCCccCC-cCChhhhhhccCCCCC
Confidence            55555555443                          3322222 444455555555554433 22222   34445555


Q ss_pred             EEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCC
Q 047929          225 FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN  304 (790)
Q Consensus       225 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~  304 (790)
                      +|++++|.+.+..|  +..+++|++|++++|.+.+..|. +..+++|++|++++|.+.+.++.. +..+++|++|++++|
T Consensus       182 ~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n  257 (768)
T 3rgz_A          182 HLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN  257 (768)
T ss_dssp             EEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSS
T ss_pred             EEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCC
Confidence            55555555443332  24455555555555555444443 555555555555555554443333 455555555555555


Q ss_pred             CCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccC-CCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcC
Q 047929          305 ELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF-KNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL  383 (790)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~  383 (790)
                      .+.+..+.       ..+++|++|++++|.+++..|..+... ++|++|++++|.+.+.+|..++.+++|++|++++|.+
T Consensus       258 ~l~~~~~~-------~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  330 (768)
T 3rgz_A          258 QFVGPIPP-------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF  330 (768)
T ss_dssp             CCEESCCC-------CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             cccCccCc-------cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence            54433332       145677777888887777777777664 9999999999999999999999999999999999999


Q ss_pred             CCcCChhhhccccccceeecCCCcceeecCCCCCCcc-cceEEEcCCCCCCCCCCccccc--CCCCCEEEccCCccCCCc
Q 047929          384 NGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPF-QLLALRLRSCHLGPHFPSWLHS--QKHLSKLDISNTRISDII  460 (790)
Q Consensus       384 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~i~~~~  460 (790)
                      .+..+...+..+++|+.++++.|.+....+..+..++ +|+.|++++|.+.+..+..+..  +++|++|++++|.+.+  
T Consensus       331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--  408 (768)
T 3rgz_A          331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG--  408 (768)
T ss_dssp             EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE--
T ss_pred             cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc--
Confidence            8777776789999999999999999988888888877 9999999999998877777766  8899999999999764  


Q ss_pred             ccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCc
Q 047929          461 PRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE  540 (790)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~  540 (790)
                                 .+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus       409 -----------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  477 (768)
T 3rgz_A          409 -----------KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND  477 (768)
T ss_dssp             -----------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             -----------ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence                       345667888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCcc-cc-ceeec
Q 047929          541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHH-QV-KAIYH  618 (790)
Q Consensus       541 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~-~~-~~~~~  618 (790)
                      +.+.+|..+. .+++|++|++++|++++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.++... .. +.++.
T Consensus       478 l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          478 LTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             CCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred             ccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence            9999998875 799999999999999999999999999999999999999999999999999999887322 22 12222


Q ss_pred             cccccccee-------eeeee-----------------eeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCE
Q 047929          619 ASFENDYIV-------EEISL-----------------VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQS  674 (790)
Q Consensus       619 ~~~~~~~~~-------~~~~~-----------------~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  674 (790)
                      ..+......       .....                 ............+..++.++++.|.+.+.+|..+..+++|+.
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~  636 (768)
T 3rgz_A          557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF  636 (768)
T ss_dssp             GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred             HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence            111100000       00000                 001111111223344556778888899999999999999999


Q ss_pred             EeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCC-CcCCccCCccccCCcc
Q 047929          675 LNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDL  753 (790)
Q Consensus       675 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l  753 (790)
                      |++++|++++.+|..++.+++|+.|++++|++++.+|..++.+++|+.|++++|++.|.+|.. ..+.+|+.+++++|.+
T Consensus       637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999987 5688999999999999


Q ss_pred             cCCC
Q 047929          754 CGAP  757 (790)
Q Consensus       754 ~~~~  757 (790)
                      .|..
T Consensus       717 ~g~i  720 (768)
T 3rgz_A          717 SGPI  720 (768)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            8754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.7e-54  Score=499.35  Aligned_cols=597  Identities=19%  Similarity=0.187  Sum_probs=368.9

Q ss_pred             EEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCc
Q 047929           52 LNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY  131 (790)
Q Consensus        52 L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~  131 (790)
                      ++.++.+++ .+|..+.  +++++|+|++|.+.+. .+..|.++++|++|++++|.+++..|.+++++++|++|++++|.
T Consensus         9 ~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             eECCCCCcc-ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            445555554 4454443  6777777777777754 44567777777777777777777667777777777777777775


Q ss_pred             ccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCC
Q 047929          132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKT  211 (790)
Q Consensus       132 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~  211 (790)
                      +...+.  .                          .+.++++|++|++++|.+..+++..++++++|++|++++|.+.+ 
T Consensus        85 l~~l~~--~--------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-  135 (680)
T 1ziw_A           85 LSQLSD--K--------------------------TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-  135 (680)
T ss_dssp             CCCCCT--T--------------------------TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC-
T ss_pred             cCccCh--h--------------------------hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccc-
Confidence            442221  1                          23344444444444444444444455555555555555555433 


Q ss_pred             CcchhccCCCCCcEEEccCCcCCCCCCccCC--CCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCccc
Q 047929          212 SIPSWVFGLSDLVFLDLSSNIFRGPIPDGFK--NLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIG  289 (790)
Q Consensus       212 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~  289 (790)
                      ..|..+..+++|++|++++|.+.+..+..+.  .+++|++|++++|.+.+..+..+..+++|+.|++.++.+........
T Consensus       136 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~  215 (680)
T 1ziw_A          136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL  215 (680)
T ss_dssp             CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHH
T ss_pred             cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHH
Confidence            2333444455555555555555443333222  33455555555555555555555555555555555544332111100


Q ss_pred             --ccCCCCCCEEEccCCCCCCCcchhhhhhhcccc--CCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCc
Q 047929          290 --LENLTFIKTLDLSFNELGQDISEILDIISACAA--FELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPP  365 (790)
Q Consensus       290 --l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~  365 (790)
                        ....++|+.|++++|.+.+..+..     +..+  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|.
T Consensus       216 ~~~l~~~~L~~L~L~~n~l~~~~~~~-----~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (680)
T 1ziw_A          216 CLELANTSIRNLSLSNSQLSTTSNTT-----FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH  290 (680)
T ss_dssp             HHHHTTSCCCEEECTTSCCCEECTTT-----TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT
T ss_pred             HHHhhhccccEEEccCCcccccChhH-----hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh
Confidence              012345566666666555444331     1222  3466666666666655556666666677777777666666666


Q ss_pred             CcCCCCCCCEEECcCCcCCCc--------CChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCC--
Q 047929          366 ASGELSSLTYLDLSNNNLNGM--------ISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPH--  435 (790)
Q Consensus       366 ~~~~l~~L~~L~l~~n~~~~~--------~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--  435 (790)
                      .+..+++|+.|++++|...+.        .....+..+++|+.+++++|.+....+..+..+++|+.|++++|.+...  
T Consensus       291 ~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l  370 (680)
T 1ziw_A          291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL  370 (680)
T ss_dssp             TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE
T ss_pred             hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc
Confidence            666667777777666543221        1112345566666666666666555555556666666666666653321  


Q ss_pred             CCccccc--CCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCC-cCCCCCCCCCEEEc
Q 047929          436 FPSWLHS--QKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIP-ISMGTLTSLRSLNL  512 (790)
Q Consensus       436 ~~~~~~~--~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L  512 (790)
                      ....+..  .++|+.|++++|.+..+.             +..+..+++|+.|++++|.+.+.++ ..+..+++|++|++
T Consensus       371 ~~~~f~~~~~~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L  437 (680)
T 1ziw_A          371 TNETFVSLAHSPLHILNLTKNKISKIE-------------SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL  437 (680)
T ss_dssp             CTTTTGGGTTSCCCEEECTTSCCCEEC-------------TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred             chhhhcccccCcCceEECCCCCCCeEC-------------hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence            1112222  246778888877765432             3445667788888888888775444 56777788888888


Q ss_pred             cCCcccccCCccccCCCCCcEEECcCCccc--ccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcc
Q 047929          513 RSNRLSGIIPVPFENCSQLVALDMGENEFV--GNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRL  590 (790)
Q Consensus       513 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l  590 (790)
                      ++|++....+..|..+++|+.|++++|.+.  +.+|..+. .+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus       438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  516 (680)
T 1ziw_A          438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL  516 (680)
T ss_dssp             CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence            888877777777777888888888887765  34555553 677888888888888777667777888888888888877


Q ss_pred             cccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCC
Q 047929          591 SGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLK  670 (790)
Q Consensus       591 ~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  670 (790)
                      ++..+..+..-                                    .......++.|+.|+|++|.+....+..|..++
T Consensus       517 ~~~~~~~~~~~------------------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~  560 (680)
T 1ziw_A          517 ARLWKHANPGG------------------------------------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF  560 (680)
T ss_dssp             GGGGSTTSTTS------------------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cccchhhccCC------------------------------------cchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence            64322111100                                    000112345677899999999854445688899


Q ss_pred             CCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCcccc-CCCCCCEEECcCCcccccCCC
Q 047929          671 GLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS-SLSFLNHLNLSDNKLVGKIPS  736 (790)
Q Consensus       671 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~  736 (790)
                      +|++|++++|.+++..+..|.++++|+.|++++|++++..|..+. .+++|+.|++++|++....+.
T Consensus       561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999999999999877777788899999999999999987777777 788999999999999877664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.2e-54  Score=497.73  Aligned_cols=591  Identities=20%  Similarity=0.189  Sum_probs=486.9

Q ss_pred             CEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEEC
Q 047929           74 NLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDT  153 (790)
Q Consensus        74 ~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l  153 (790)
                      +.++.+++.+.  .+|..+.  +++++|++++|.+++..+..+.++++|++|++++|.+.....                
T Consensus         7 ~~~~cs~~~L~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------------   66 (680)
T 1ziw_A            7 EVADCSHLKLT--QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP----------------   66 (680)
T ss_dssp             SEEECCSSCCS--SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT----------------
T ss_pred             CeeECCCCCcc--ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH----------------
Confidence            56888888887  5677664  789999999999988666678999999999999886543211                


Q ss_pred             CCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcC
Q 047929          154 SDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIF  233 (790)
Q Consensus       154 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~  233 (790)
                                  ..+.++++|++|++++|.+..+++.+|+++++|++|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus        67 ------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l  133 (680)
T 1ziw_A           67 ------------ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGL  133 (680)
T ss_dssp             ------------THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCC
T ss_pred             ------------HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcc
Confidence                        167788999999999999999998899999999999999999865 3346788999999999999999


Q ss_pred             CCCCCccCCCCCCCcEEeCCCCcCCcccccccc--CCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcc
Q 047929          234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFS--NFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS  311 (790)
Q Consensus       234 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  311 (790)
                      .+..|..+.++++|++|++++|.+.+..+..+.  .+++|++|++++|.+.+..+.. +..+++|+.+++.++.+.....
T Consensus       134 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~  212 (680)
T 1ziw_A          134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLT  212 (680)
T ss_dssp             SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHH
T ss_pred             cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh-hhhhhhhhhhhccccccChhhH
Confidence            988888899999999999999999887776554  5689999999999998655554 8899999999999887643221


Q ss_pred             hhhhhhhccccCCCCEEEccCCccccccchhhccCCC--CcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCCh
Q 047929          312 EILDIISACAAFELESLFLRGCKISGQLTNQLGLFKN--LHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISE  389 (790)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  389 (790)
                      ..  .......++|+.|++++|.+.+..+.++..++.  |++|++++|.+.+..+..++.+++|++|++++|.+.+..+.
T Consensus       213 ~~--~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (680)
T 1ziw_A          213 EK--LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH  290 (680)
T ss_dssp             HH--HHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT
T ss_pred             HH--HHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh
Confidence            11  111123478999999999999888888887755  99999999999988888999999999999999999876554


Q ss_pred             hhhccccccceeecCCCcce---------eecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCc
Q 047929          390 IHFGNLTELAFFYANGNSVN---------FKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDII  460 (790)
Q Consensus       390 ~~~~~l~~L~~l~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  460 (790)
                       .+.++++|+.+++.++...         ......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....
T Consensus       291 -~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~  369 (680)
T 1ziw_A          291 -SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT  369 (680)
T ss_dssp             -TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCE
T ss_pred             -hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhh
Confidence             6889999999999876433         222236778899999999999999988888999999999999999753211


Q ss_pred             ccccccccccccCCCccC--CCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCC-ccccCCCCCcEEECc
Q 047929          461 PRWFWNSIYQDTIPDCWM--NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIP-VPFENCSQLVALDMG  537 (790)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~  537 (790)
                      .           ....+.  ..++|+.|++++|++++..+..|..+++|+.|++++|.+.+..+ ..+.++++|++|+++
T Consensus       370 l-----------~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls  438 (680)
T 1ziw_A          370 L-----------TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS  438 (680)
T ss_dssp             E-----------CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred             c-----------chhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence            0           011111  23689999999999998888899999999999999999986554 688999999999999


Q ss_pred             CCcccccCchhhhhcCCCCcEEEcCCCccc--ccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccce
Q 047929          538 ENEFVGNIPTWMGERFSRLRILNLRSNKLH--GIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKA  615 (790)
Q Consensus       538 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~  615 (790)
                      +|.+.+..+..+ ..+++|+.|++++|.+.  +..|..+..+++|+.|++++|.+++..|..+.++++            
T Consensus       439 ~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~------------  505 (680)
T 1ziw_A          439 YNKYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK------------  505 (680)
T ss_dssp             SCSEEECCTTTT-TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT------------
T ss_pred             CCCcceeChhhh-hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccc------------
Confidence            999885555544 47899999999999886  567888999999999999999998766666665554            


Q ss_pred             eecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCC--------CcccccCCCCCEEeCCCCcCCcCCC
Q 047929          616 IYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEI--------PMEVTNLKGLQSLNLSHNSFIGKIP  687 (790)
Q Consensus       616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~p  687 (790)
                                                      |++|++++|.+.+..        +..+..+++|++|++++|.++...+
T Consensus       506 --------------------------------L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          506 --------------------------------LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV  553 (680)
T ss_dssp             --------------------------------CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             --------------------------------cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence                                            468999999987532        1237889999999999999996555


Q ss_pred             ccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCC--cCCccCCccccCC-cccCCC
Q 047929          688 ETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSST--QLQSFGASSITGN-DLCGAP  757 (790)
Q Consensus       688 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~--~~~sl~~l~~~~n-~l~~~~  757 (790)
                      ..|.++++|++|++++|++++..+..|..+++|+.|++++|++.+..|...  .+.+|+.+++.+| -.|+.+
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            679999999999999999998777788999999999999999998666543  4788999999999 456544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-51  Score=469.75  Aligned_cols=537  Identities=21%  Similarity=0.242  Sum_probs=353.3

Q ss_pred             EEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCc
Q 047929           52 LNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY  131 (790)
Q Consensus        52 L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~  131 (790)
                      ++.++.+++ .+|..+..  ++++|+|++|.+.+. .|..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.
T Consensus        17 ~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   92 (606)
T 3t6q_A           17 YNCENLGLN-EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP   92 (606)
T ss_dssp             EECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EECCCCCcc-cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence            344444554 45554543  678888888887754 46677788888888888888777677778888888888887775


Q ss_pred             ccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCC
Q 047929          132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKT  211 (790)
Q Consensus       132 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~  211 (790)
                      +.....  .                          .+.++++|++|++++|.+..+.+..+.++++|++|++++|.+...
T Consensus        93 l~~~~~--~--------------------------~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~  144 (606)
T 3t6q_A           93 LIFMAE--T--------------------------ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI  144 (606)
T ss_dssp             CSEECT--T--------------------------TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred             ccccCh--h--------------------------hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccccc
Confidence            432211  1                          344455555555555555555455555666666666666655443


Q ss_pred             CcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCc--EEeCCCCcCCccccccccCCCCCCEEEccCcccccccCccc
Q 047929          212 SIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR--YLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIG  289 (790)
Q Consensus       212 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~--~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~  289 (790)
                      ..|..+ .+++|++|++++|.+.+..|..++.+++|+  +|++++|.+.+..+..+.. .+|+.|++++|..   ++.. 
T Consensus       145 ~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~-  218 (606)
T 3t6q_A          145 KLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVI-  218 (606)
T ss_dssp             CCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHH-
T ss_pred             Cccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHH-
Confidence            334433 255666666666655554455555555555  5566666655554444432 3555555555541   1111 


Q ss_pred             ccCCCCCCEEEccCCCCCC-----CcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCC
Q 047929          290 LENLTFIKTLDLSFNELGQ-----DISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLP  364 (790)
Q Consensus       290 l~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~  364 (790)
                      +..+.+++...+....+..     .....+.  .. ...+|+.+++++|.+.+..+..+..+++|++|++++|.+. .+|
T Consensus       219 ~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~--~l-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp  294 (606)
T 3t6q_A          219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFE--GL-CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP  294 (606)
T ss_dssp             HHHTTTCEEEEEECCCCTTSCCCCCCGGGGG--GG-GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCC
T ss_pred             hhhccccchhheechhhccccccccChhHhc--hh-hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCC
Confidence            2223332222222111110     0011000  00 0114555555555555444444555555555555555554 444


Q ss_pred             cCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCC
Q 047929          365 PASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQK  444 (790)
Q Consensus       365 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  444 (790)
                      ..+..+++|++|++++|.+.                                                 +..+..+..++
T Consensus       295 ~~l~~l~~L~~L~l~~n~l~-------------------------------------------------~~~~~~~~~l~  325 (606)
T 3t6q_A          295 SGLVGLSTLKKLVLSANKFE-------------------------------------------------NLCQISASNFP  325 (606)
T ss_dssp             SSCCSCTTCCEEECTTCCCS-------------------------------------------------BGGGGCGGGCT
T ss_pred             hhhcccccCCEEECccCCcC-------------------------------------------------cCchhhhhccC
Confidence            44555555555555555443                                                 33334456667


Q ss_pred             CCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccC--CcCCCCCCCCCEEEccCCcccccCC
Q 047929          445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSI--PISMGTLTSLRSLNLRSNRLSGIIP  522 (790)
Q Consensus       445 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~  522 (790)
                      +|++|++++|.+....            .+..+..+++|++|++++|.+.+..  +..+..+++|++|++++|++.+..+
T Consensus       326 ~L~~L~l~~n~~~~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  393 (606)
T 3t6q_A          326 SLTHLSIKGNTKRLEL------------GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT  393 (606)
T ss_dssp             TCSEEECCSCSSCCBC------------CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred             cCCEEECCCCCccccc------------chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence            7777777777654221            1233567788888888888887654  6678888899999999999888888


Q ss_pred             ccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccC---Ccchh
Q 047929          523 VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSV---PKCIN  599 (790)
Q Consensus       523 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~---p~~l~  599 (790)
                      ..+..+++|+.|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..   +..+.
T Consensus       394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  473 (606)
T 3t6q_A          394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ  473 (606)
T ss_dssp             TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG
T ss_pred             HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc
Confidence            888889999999999998887666654557899999999999998888888899999999999999987522   12233


Q ss_pred             ccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCC
Q 047929          600 NFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSH  679 (790)
Q Consensus       600 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  679 (790)
                      .                                            ++.|+.|++++|.+.+..|..+..+++|++|++++
T Consensus       474 ~--------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  509 (606)
T 3t6q_A          474 T--------------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH  509 (606)
T ss_dssp             G--------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             c--------------------------------------------CCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence            3                                            34567899999999988889999999999999999


Q ss_pred             CcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCC
Q 047929          680 NSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPS  736 (790)
Q Consensus       680 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  736 (790)
                      |++++..|+++..+++| .|++++|++++..|..+..+++|++|++++|++.+..+.
T Consensus       510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            99999999999999999 999999999988888899999999999999999876653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-49  Score=454.61  Aligned_cols=534  Identities=21%  Similarity=0.228  Sum_probs=385.6

Q ss_pred             EEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCC
Q 047929           51 ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGS  130 (790)
Q Consensus        51 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~  130 (790)
                      +++.++.+++ .+|..+.  +++++|+|++|.+.+. .+..|.++++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus        15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            4666777776 5565554  7888899999888855 4557888899999999998888877888888888998888888


Q ss_pred             cccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCC
Q 047929          131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGK  210 (790)
Q Consensus       131 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~  210 (790)
                      .+.....                            ..+.++++|++|++++|.+...++..++++++|++|++++|.+..
T Consensus        91 ~l~~~~p----------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  142 (606)
T 3vq2_A           91 PIQSFSP----------------------------GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS  142 (606)
T ss_dssp             CCCCCCT----------------------------TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC
T ss_pred             cccccCh----------------------------hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccc
Confidence            6543311                            146677777888888888887777778888899999999988876


Q ss_pred             CCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCc----EEeCCCCcCCccccccccCCCCCCEEEccCcccccccC
Q 047929          211 TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR----YLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTIS  286 (790)
Q Consensus       211 ~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~  286 (790)
                      ..+|..+..+++|++|++++|.+.+..|..++.+++|+    +|++++|.+.+..+..+... +|+.|++++|.+.+...
T Consensus       143 ~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~  221 (606)
T 3vq2_A          143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIM  221 (606)
T ss_dssp             CCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHH
T ss_pred             eechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHH
Confidence            56788888899999999999988877777777766654    78999998887666666554 88999999888764444


Q ss_pred             cccccCCCCCCEEEccCCCCCCCc------chhhhhhhccccCCCCEEEc-cCCccccccchhhccCCCCcEEEccCccc
Q 047929          287 SIGLENLTFIKTLDLSFNELGQDI------SEILDIISACAAFELESLFL-RGCKISGQLTNQLGLFKNLHTLALSDNSV  359 (790)
Q Consensus       287 ~~~l~~l~~L~~L~l~~~~~~~~~------~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~l~~l~~L~~L~L~~~~i  359 (790)
                      ...+.+++.|+.+++..+.+....      .....  .... ..++.+.+ ..+.+.+..+. +..+++|+.|++++|.+
T Consensus       222 ~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~--~l~~-l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~  297 (606)
T 3vq2_A          222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME--GLCD-VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI  297 (606)
T ss_dssp             HHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT--TGGG-SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC
T ss_pred             HHHhccccccccccccccccccCCcccccChHHhh--hhhh-ccHhheeccccccccccccc-cccCCCCCEEEecCccc
Confidence            444788888888877654432211      01000  0111 13444444 33444444443 55556666666666655


Q ss_pred             CCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcc
Q 047929          360 SGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSW  439 (790)
Q Consensus       360 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  439 (790)
                      . .+| .+..+++|++|++++|.+.                                                  .+|. 
T Consensus       298 ~-~l~-~l~~~~~L~~L~l~~n~l~--------------------------------------------------~lp~-  324 (606)
T 3vq2_A          298 K-YLE-DVPKHFKWQSLSIIRCQLK--------------------------------------------------QFPT-  324 (606)
T ss_dssp             C-CCC-CCCTTCCCSEEEEESCCCS--------------------------------------------------SCCC-
T ss_pred             h-hhh-hccccccCCEEEcccccCc--------------------------------------------------cccc-
Confidence            4 333 4555555555555555542                                                  2232 


Q ss_pred             cccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCccccc--CCcCCCCCCCCCEEEccCCcc
Q 047929          440 LHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGS--IPISMGTLTSLRSLNLRSNRL  517 (790)
Q Consensus       440 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~i  517 (790)
                      + .+++|++|++++|.....               ..+..+++|+.|++++|.+++.  .+..+..+++|++|++++|.+
T Consensus       325 ~-~l~~L~~L~l~~n~~~~~---------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  388 (606)
T 3vq2_A          325 L-DLPFLKSLTLTMNKGSIS---------------FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA  388 (606)
T ss_dssp             C-CCSSCCEEEEESCSSCEE---------------CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE
T ss_pred             C-CCCccceeeccCCcCccc---------------hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc
Confidence            2 456666666666643211               1234667777888887777654  356677778888888888887


Q ss_pred             cccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCccccc-CCc
Q 047929          518 SGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGS-VPK  596 (790)
Q Consensus       518 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~  596 (790)
                      .+. +..+..+++|+.|++++|.+.+..|...+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+. +|.
T Consensus       389 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  467 (606)
T 3vq2_A          389 IIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN  467 (606)
T ss_dssp             EEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             ccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence            754 367777888888888888887666633445788888888888888887888888888899999998888763 565


Q ss_pred             chhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEe
Q 047929          597 CINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLN  676 (790)
Q Consensus       597 ~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  676 (790)
                      .+..+++                                            |++|++++|.+.+..|..+..+++|++|+
T Consensus       468 ~~~~l~~--------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          468 VFANTTN--------------------------------------------LTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             CCTTCTT--------------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             hhccCCC--------------------------------------------CCEEECCCCcCCccChhhhcccccCCEEE
Confidence            5555444                                            46888999998888888889999999999


Q ss_pred             CCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCC-CCCEEECcCCcccccCCC
Q 047929          677 LSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS-FLNHLNLSDNKLVGKIPS  736 (790)
Q Consensus       677 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~  736 (790)
                      +++|++++..|..|..+++|++|++++|+++ .+|..+..++ +|++|++++|++.+..+.
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999888999999999999999999998 5777788887 599999999999876664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.2e-49  Score=448.98  Aligned_cols=528  Identities=19%  Similarity=0.181  Sum_probs=420.3

Q ss_pred             CEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEEC
Q 047929           74 NLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDT  153 (790)
Q Consensus        74 ~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l  153 (790)
                      +.++.++..+.  .+|..+.  .++++|++++|.+++..|.+|+++++|++|++++|.+.....                
T Consensus        15 ~~~~c~~~~l~--~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----------------   74 (606)
T 3t6q_A           15 KTYNCENLGLN--EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE----------------   74 (606)
T ss_dssp             TEEECTTSCCS--SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT----------------
T ss_pred             ceEECCCCCcc--cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh----------------
Confidence            36788887777  5677665  479999999999999788899999999999999987543221                


Q ss_pred             CCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcC
Q 047929          154 SDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIF  233 (790)
Q Consensus       154 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~  233 (790)
                                  ..+.++++|++|++++|.+....+..++++++|++|++++|.+.. ..|..+..+++|++|++++|.+
T Consensus        75 ------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l  141 (606)
T 3t6q_A           75 ------------DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHI  141 (606)
T ss_dssp             ------------TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCC
T ss_pred             ------------hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcc
Confidence                        157788999999999999999999999999999999999999865 2356688899999999999999


Q ss_pred             CCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCC--EEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcc
Q 047929          234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE--YLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS  311 (790)
Q Consensus       234 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  311 (790)
                      .+..+..+..+++|++|++++|.+.+..+..+..+++|+  .|++++|.+.+..+.. + ...+|+.|++++|..   .+
T Consensus       142 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~~~~---~~  216 (606)
T 3t6q_A          142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA-F-DSAVFQSLNFGGTQN---LL  216 (606)
T ss_dssp             CCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT-T-TTCEEEEEECTTCSC---HH
T ss_pred             cccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH-h-hhccccccccCCchh---HH
Confidence            874444466699999999999999988888899999999  8999999988655543 3 346789999988752   11


Q ss_pred             hhhhhhhccccCC--CCEEEccCCc---cccccchhhccCC--CCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCC
Q 047929          312 EILDIISACAAFE--LESLFLRGCK---ISGQLTNQLGLFK--NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN  384 (790)
Q Consensus       312 ~~~~~~~~~~~~~--L~~L~l~~~~---~~~~~~~~l~~l~--~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~  384 (790)
                      .     ....+.+  ++.+.+....   .....+..+..+.  +|++|++++|.+.+..+..++.+++|++|++++|.++
T Consensus       217 ~-----~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  291 (606)
T 3t6q_A          217 V-----IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS  291 (606)
T ss_dssp             H-----HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred             H-----HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence            1     1122222  3333332221   1111122232222  6777777777777666666777777777777777654


Q ss_pred             CcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCccccc
Q 047929          385 GMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWF  464 (790)
Q Consensus       385 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  464 (790)
                      .                                                  +|..+..+++|++|++++|.+.+..+   
T Consensus       292 ~--------------------------------------------------lp~~l~~l~~L~~L~l~~n~l~~~~~---  318 (606)
T 3t6q_A          292 E--------------------------------------------------LPSGLVGLSTLKKLVLSANKFENLCQ---  318 (606)
T ss_dssp             C--------------------------------------------------CCSSCCSCTTCCEEECTTCCCSBGGG---
T ss_pred             C--------------------------------------------------CChhhcccccCCEEECccCCcCcCch---
Confidence            2                                                  33446678899999999999876543   


Q ss_pred             ccccccccCCCccCCCCCCcEEEccCCcccccCCc-CCCCCCCCCEEEccCCcccccC--CccccCCCCCcEEECcCCcc
Q 047929          465 WNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPI-SMGTLTSLRSLNLRSNRLSGII--PVPFENCSQLVALDMGENEF  541 (790)
Q Consensus       465 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~--~~~l~~l~~L~~L~l~~n~~  541 (790)
                                ..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+
T Consensus       319 ----------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  388 (606)
T 3t6q_A          319 ----------ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP  388 (606)
T ss_dssp             ----------GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred             ----------hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC
Confidence                      3456789999999999998865554 4889999999999999998776  77899999999999999999


Q ss_pred             cccCchhhhhcCCCCcEEEcCCCcccccCCcc-ccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeeccc
Q 047929          542 VGNIPTWMGERFSRLRILNLRSNKLHGIFPIQ-ICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHAS  620 (790)
Q Consensus       542 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~  620 (790)
                      .+..|..+ ..+++|++|++++|++.+..+.. +..+++|+.|++++|.+.+..|..+..+++                 
T Consensus       389 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-----------------  450 (606)
T 3t6q_A          389 LSLKTEAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA-----------------  450 (606)
T ss_dssp             EEECTTTT-TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT-----------------
T ss_pred             CcCCHHHh-cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC-----------------
Confidence            87666665 47899999999999998765544 889999999999999998877777666554                 


Q ss_pred             ccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC---CCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCC
Q 047929          621 FENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG---EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIE  697 (790)
Q Consensus       621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  697 (790)
                                                 |++|++++|.+.+   ..+..+..+++|++|++++|.+++..|.+|..+++|+
T Consensus       451 ---------------------------L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  503 (606)
T 3t6q_A          451 ---------------------------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN  503 (606)
T ss_dssp             ---------------------------CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ---------------------------CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence                                       4689999999976   2335689999999999999999998899999999999


Q ss_pred             EEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCC-CcCCccCCccccCCcc
Q 047929          698 SLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDL  753 (790)
Q Consensus       698 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l  753 (790)
                      +|++++|++.+..|..+..+++| .|++++|++.+.+|.. ..+.+|+.+++.+|++
T Consensus       504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence            99999999999999999999999 9999999999877765 4578899999999965

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.7e-47  Score=433.69  Aligned_cols=533  Identities=21%  Similarity=0.170  Sum_probs=418.3

Q ss_pred             CcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEE
Q 047929          148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD  227 (790)
Q Consensus       148 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~  227 (790)
                      -++++.++..+...+.   .+  .+++++|++++|.+..+.+..|.++++|++|++++|.+.+ ..|..+..+++|++|+
T Consensus        13 ~~~~~c~~~~l~~ip~---~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~   86 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPD---DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLI   86 (606)
T ss_dssp             TTEEECTTSCCSSCCT---TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred             CCceEccCCCcccCCC---CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeE
Confidence            3578888888887754   22  2789999999999999999999999999999999999865 3466788999999999


Q ss_pred             ccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCccccc-ccCcccccCCCCCCEEEccCCCC
Q 047929          228 LSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQG-TISSIGLENLTFIKTLDLSFNEL  306 (790)
Q Consensus       228 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~l~~L~~L~l~~~~~  306 (790)
                      +++|.+.+..|..|+++++|++|++++|.+.+..+..++.+++|++|++++|.+.+ .+|.. +.++++|++|++++|.+
T Consensus        87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A           87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCC
T ss_pred             CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcc
Confidence            99999998889999999999999999999998887889999999999999999875 45655 89999999999999998


Q ss_pred             CCCcchhhhhhhccccCC-CCEEEccCCccccccchhhccCCCCcEEEccCcccC-CCCCcCcCCCCCCCEEECcCCcCC
Q 047929          307 GQDISEILDIISACAAFE-LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS-GPLPPASGELSSLTYLDLSNNNLN  384 (790)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~~~~~~~~~l~~L~~L~l~~n~~~  384 (790)
                      ....+..+.  ....++. +.++++++|.+....+..+... +|++|++++|.+. +..|..++.++.++.+++..+.+.
T Consensus       166 ~~~~~~~~~--~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  242 (606)
T 3vq2_A          166 QTITVNDLQ--FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK  242 (606)
T ss_dssp             CEECTTTTH--HHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred             eecChhhhh--hhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence            876655222  1122222 5589999999987666655554 8999999999876 345667788888888887654433


Q ss_pred             Cc-----CChhhhccccc--cceeec-CCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCcc
Q 047929          385 GM-----ISEIHFGNLTE--LAFFYA-NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRI  456 (790)
Q Consensus       385 ~~-----~~~~~~~~l~~--L~~l~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i  456 (790)
                      ..     .....+.++..  ++.+.+ ..+.+....+. +..+++|+.++++++.+.. ++ .+..+++|++|++++|.+
T Consensus       243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l  319 (606)
T 3vq2_A          243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL  319 (606)
T ss_dssp             TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC
T ss_pred             cCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC
Confidence            21     11222333333  333444 44445544544 7778888888888888754 44 677888888888888887


Q ss_pred             CCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccC--CccccCCCCCcEE
Q 047929          457 SDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGII--PVPFENCSQLVAL  534 (790)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~l~~l~~L~~L  534 (790)
                      ..              +| .+ .+++|+.|++++|...+..  .+..+++|++|++++|.+++..  +..+..+++|++|
T Consensus       320 ~~--------------lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L  381 (606)
T 3vq2_A          320 KQ--------------FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL  381 (606)
T ss_dssp             SS--------------CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred             cc--------------cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence            43              23 23 6788888888888655433  4667888888888888887663  6777888888888


Q ss_pred             ECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCcEEEccCCcccccCCcchhccccccccCCcccc
Q 047929          535 DMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQV  613 (790)
Q Consensus       535 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~  613 (790)
                      ++++|.+.+ +|..+ ..+++|++|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..+.++++          
T Consensus       382 ~L~~n~l~~-~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------  449 (606)
T 3vq2_A          382 DLSFNGAII-MSANF-MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS----------  449 (606)
T ss_dssp             ECCSCSEEE-ECCCC-TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT----------
T ss_pred             ECCCCcccc-chhhc-cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC----------
Confidence            888888773 55444 367888888888888887766 56788888888888888888777776665554          


Q ss_pred             ceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC-CCCcccccCCCCCEEeCCCCcCCcCCCccccC
Q 047929          614 KAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG-EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGN  692 (790)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  692 (790)
                                                        |++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..|..
T Consensus       450 ----------------------------------L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  495 (606)
T 3vq2_A          450 ----------------------------------LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT  495 (606)
T ss_dssp             ----------------------------------CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             ----------------------------------CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc
Confidence                                              5689999999987 47888999999999999999999999999999


Q ss_pred             CCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCC-CcC-CccCCccccCCcc-cCCCC
Q 047929          693 MRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQL-QSFGASSITGNDL-CGAPL  758 (790)
Q Consensus       693 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~-~sl~~l~~~~n~l-~~~~~  758 (790)
                      +++|++|++++|++.+..|..+..+++|++|++++|++. .+|.. ..+ .+|+.+++.+|++ |+.+.
T Consensus       496 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999999999999999988999999999999999999998 46554 334 4699999999954 65554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-46  Score=439.66  Aligned_cols=541  Identities=21%  Similarity=0.187  Sum_probs=330.2

Q ss_pred             EEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccC-CCCCCCCCCCcEEECcCC
Q 047929           52 LNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWI-PHQLGNLSNLMHLDLSGS  130 (790)
Q Consensus        52 L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~l-p~~l~~l~~L~~L~ls~~  130 (790)
                      .+.++++++ .+|.   -.++|++|+|++|.+.+. .|..|.++++|++|++++|...+.+ |.+|.++++|++|++++|
T Consensus         9 ~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            9 AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEESCCCSS-CCCS---SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             EEccCCCCC-CCCC---CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            344455555 3333   345677777777777654 4666777777777777777444333 566677777777777666


Q ss_pred             cccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCc--ccCcCCCCCCEEECCCCCC
Q 047929          131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAP--LASANFSSLNALDLSGNLF  208 (790)
Q Consensus       131 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~L~~~~l  208 (790)
                      .+.....                            ..+.++++|++|++++|.+....+  ..+.++++|++|++++|.+
T Consensus        84 ~l~~~~p----------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l  135 (844)
T 3j0a_A           84 KIYFLHP----------------------------DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI  135 (844)
T ss_dssp             CCCEECT----------------------------TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC
T ss_pred             cCcccCH----------------------------hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc
Confidence            4332111                            134555566666666666554322  2355666666666666655


Q ss_pred             CCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCC--CCCcEEeCCCCcCCccccccccCCCC------CCEEEccCcc
Q 047929          209 GKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNL--TSLRYLDLSYNQFNSTISDCFSNFDD------LEYLSLGYNR  280 (790)
Q Consensus       209 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~  280 (790)
                      .+...+..+..+++|++|++++|.+.+..+..+..+  ++|+.|++++|.+.+..+..+..+++      |+.|++++|.
T Consensus       136 ~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  215 (844)
T 3j0a_A          136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG  215 (844)
T ss_dssp             CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred             cccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence            443333445556666666666665555555555544  55666666655555544444433333      5555555554


Q ss_pred             cccccCccccc--CCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccC--CCCcEEEccC
Q 047929          281 LQGTISSIGLE--NLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF--KNLHTLALSD  356 (790)
Q Consensus       281 l~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~L~~  356 (790)
                      +.+..+.....  ....++.+.+..+.....                    ...+.+.......+..+  ++|+.|++++
T Consensus       216 l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~--------------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~  275 (844)
T 3j0a_A          216 WTVDITGNFSNAISKSQAFSLILAHHIMGAG--------------------FGFHNIKDPDQNTFAGLARSSVRHLDLSH  275 (844)
T ss_dssp             SSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------------------SSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred             CchhHHHHHHhhcCcccccceeccccccccc--------------------ccccccCCCChhhhhccccCCccEEECCC
Confidence            44333322111  112334444332211100                    00111111112222222  4455555555


Q ss_pred             cccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCC
Q 047929          357 NSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHF  436 (790)
Q Consensus       357 ~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  436 (790)
                      |.+.+..+..++.+++|+.|++++|.+.+.                         .+..+..+++|+.|++++|.+.+..
T Consensus       276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~  330 (844)
T 3j0a_A          276 GFVFSLNSRVFETLKDLKVLNLAYNKINKI-------------------------ADEAFYGLDNLQVLNLSYNLLGELY  330 (844)
T ss_dssp             CCCCEECSCCSSSCCCCCEEEEESCCCCEE-------------------------CTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred             CcccccChhhhhcCCCCCEEECCCCcCCCC-------------------------ChHHhcCCCCCCEEECCCCCCCccC
Confidence            555544455555555555555555554433                         2333344455555556666665566


Q ss_pred             CcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCc
Q 047929          437 PSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNR  516 (790)
Q Consensus       437 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  516 (790)
                      +..+..+++|++|++++|.+..+.+             ..+..+++|+.|++++|.+++.     ..+++|+.|++++|+
T Consensus       331 ~~~~~~l~~L~~L~L~~N~i~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~  392 (844)
T 3j0a_A          331 SSNFYGLPKVAYIDLQKNHIAIIQD-------------QTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNK  392 (844)
T ss_dssp             SCSCSSCTTCCEEECCSCCCCCCCS-------------SCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCC
T ss_pred             HHHhcCCCCCCEEECCCCCCCccCh-------------hhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCC
Confidence            6667778888888888888765432             3456778888888888887732     236788888888888


Q ss_pred             ccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCc-cccCCCCCcEEEccCCcccccCC
Q 047929          517 LSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPI-QICHLSSLQILDVAYNRLSGSVP  595 (790)
Q Consensus       517 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p  595 (790)
                      ++.. |..   ..+++.|++++|.+.+.-.......+++|++|++++|++++..+. .+..+++|+.|++++|.+....+
T Consensus       393 l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~  468 (844)
T 3j0a_A          393 LVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE  468 (844)
T ss_dssp             CCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred             cccc-ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence            8744 222   467888999999887543333344789999999999998865433 35567899999999998874332


Q ss_pred             cchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEE
Q 047929          596 KCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSL  675 (790)
Q Consensus       596 ~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  675 (790)
                      ....                                       ......++.|+.|+|++|.+++..|..+..+++|++|
T Consensus       469 ~~~~---------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  509 (844)
T 3j0a_A          469 TELC---------------------------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL  509 (844)
T ss_dssp             SCCC---------------------------------------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred             cccc---------------------------------------hhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence            1100                                       0001124557789999999998888889999999999


Q ss_pred             eCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCC
Q 047929          676 NLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPS  736 (790)
Q Consensus       676 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  736 (790)
                      +|++|++++..|..+.  ++|+.|++++|++++..|..+   .+|+.|++++|++....+.
T Consensus       510 ~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          510 SLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             EEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred             ECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence            9999999977777666  899999999999999888776   5889999999999876653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.4e-48  Score=437.60  Aligned_cols=109  Identities=18%  Similarity=0.221  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhhcCCCC-CC-------CCCCCCCCCCCccc---CceeecCCCCcEEEEEcCCCCCCccccccCcCCCCC
Q 047929            5 ESERVALIKLKQDFKDP-SN-------HLASWIGDVDCCEW---GGVVCNNITGHVLELNLERSELGGKINPALVDLKHL   73 (790)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~-------~~~~w~~~~~~~~~---~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L   73 (790)
                      ..|+.||.+++++..++ |.       ...+|..++++|.|   .||.|+. .+||+.|+|+++.+.|.+|++++++++|
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~L  107 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTEL  107 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCccc
Confidence            36899999999998533 33       34589877999999   9999975 4899999999999999999999999999


Q ss_pred             CEEeCCCCCCCCC-----------CcCccccCCCCCCEEeCCCCcccccCCCCCC
Q 047929           74 NLLDLSGNDFQGI-----------QIPEYIGSMDNLRYLNLSGAGFAGWIPHQLG  117 (790)
Q Consensus        74 ~~L~Ls~~~~~~~-----------~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~  117 (790)
                      ++|+|++|.+...           .+|...  +.+|+ ++++++.+.+..|..+.
T Consensus       108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A          108 EVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSC
T ss_pred             eEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHH
Confidence            9999999975211           123322  34455 66666655554554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-45  Score=416.96  Aligned_cols=501  Identities=20%  Similarity=0.212  Sum_probs=307.6

Q ss_pred             CCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcE
Q 047929           71 KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEH  150 (790)
Q Consensus        71 ~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~  150 (790)
                      +++++|++++|.+.+. .+..|.++++|++|++++|++++..|.+++++++|++|++++|.+...+..            
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~------------   94 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG------------   94 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT------------
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh------------
Confidence            4677777777777654 345667777777777777777765566677777777777776654322110            


Q ss_pred             EECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccC
Q 047929          151 LDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS  230 (790)
Q Consensus       151 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~  230 (790)
                                      .+.++++|++|++++|.+..++...++++++|++|++++|.+....+|..+..+++|++|++++
T Consensus        95 ----------------~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~  158 (570)
T 2z63_A           95 ----------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  158 (570)
T ss_dssp             ----------------TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred             ----------------hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence                            3455566666666666666666656777777777777777775545677777777777777777


Q ss_pred             CcCCCCCCccCCCCCCC----cEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCC
Q 047929          231 NIFRGPIPDGFKNLTSL----RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL  306 (790)
Q Consensus       231 ~~~~~~~p~~~~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~  306 (790)
                      |.+.+..+..++.+++|    ++|++++|.+.+..+..+... +|+.|++++|..........+..++.++...+....+
T Consensus       159 n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  237 (570)
T 2z63_A          159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  237 (570)
T ss_dssp             SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred             CccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence            77776666666666666    677777777776666666554 6777777666432211112244555555544432211


Q ss_pred             CCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCC--CCcEEEccCc-ccCCCCCcCcCCCCCCCEEECcCCcC
Q 047929          307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFK--NLHTLALSDN-SVSGPLPPASGELSSLTYLDLSNNNL  383 (790)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~L~~~-~i~~~~~~~~~~l~~L~~L~l~~n~~  383 (790)
                      ...             ..++.          .....+..++  .++.+++.++ .+.+..+..+..+++|+.|++++|.+
T Consensus       238 ~~~-------------~~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  294 (570)
T 2z63_A          238 RNE-------------GNLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI  294 (570)
T ss_dssp             CCC-------------SSCEE----------CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred             cCc-------------hhhhh----------cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence            110             00000          0001111111  2344444444 34444444455555555555555443


Q ss_pred             CCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccc
Q 047929          384 NGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRW  463 (790)
Q Consensus       384 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~  463 (790)
                      .+                                                  +|.++..+ +|++|++++|.+..++.  
T Consensus       295 ~~--------------------------------------------------l~~~~~~~-~L~~L~l~~n~~~~l~~--  321 (570)
T 2z63_A          295 ER--------------------------------------------------VKDFSYNF-GWQHLELVNCKFGQFPT--  321 (570)
T ss_dssp             CS--------------------------------------------------CCBCCSCC-CCSEEEEESCBCSSCCB--
T ss_pred             hh--------------------------------------------------hhhhhccC-CccEEeeccCcccccCc--
Confidence            32                                                  11122233 44444444444432211  


Q ss_pred             cccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccC--CccccCCCCCcEEECcCCcc
Q 047929          464 FWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGII--PVPFENCSQLVALDMGENEF  541 (790)
Q Consensus       464 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~l~~l~~L~~L~l~~n~~  541 (790)
                                    ..+++|+.|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+
T Consensus       322 --------------~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l  385 (570)
T 2z63_A          322 --------------LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV  385 (570)
T ss_dssp             --------------CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred             --------------ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence                          1334555555555555543332  44566666666666655443  34555666666666666666


Q ss_pred             cccCchhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeeccc
Q 047929          542 VGNIPTWMGERFSRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHAS  620 (790)
Q Consensus       542 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~  620 (790)
                      .+. +..+ ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.++++                 
T Consensus       386 ~~~-~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-----------------  446 (570)
T 2z63_A          386 ITM-SSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-----------------  446 (570)
T ss_dssp             EEE-EEEE-ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-----------------
T ss_pred             ccc-cccc-cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc-----------------
Confidence            532 2222 356667777777776665444 34666777777777777776666555544443                 


Q ss_pred             ccccceeeeeeeeeccchhhhhhcccceeEEEccCccCC-CCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEE
Q 047929          621 FENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFS-GEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESL  699 (790)
Q Consensus       621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  699 (790)
                                                 |++|++++|.+. +.+|..+..+++|++|++++|.+++..|.+|..+++|++|
T Consensus       447 ---------------------------L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          447 ---------------------------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             ---------------------------CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ---------------------------CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence                                       346777777775 4677888899999999999999998889999999999999


Q ss_pred             eCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCc
Q 047929          700 DLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQ  739 (790)
Q Consensus       700 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~  739 (790)
                      ++++|++++..|..+..+++|+.|++++|++.+.+|....
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence            9999999988888899999999999999999998887543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-45  Score=430.04  Aligned_cols=511  Identities=20%  Similarity=0.205  Sum_probs=400.6

Q ss_pred             CCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCc-chhccCCCCCcEEEccCCcCCCCCCccCCCCCCCc
Q 047929          170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSI-PSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR  248 (790)
Q Consensus       170 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~  248 (790)
                      -.+++++|++++|.+..+.+..|.++++|++|++++|.... .+ |..+..+++|++|++++|.+.+..|.+|.++++|+
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~-~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  100 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF  100 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC-EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc-ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence            34688999999999999888899999999999999986544 34 77788899999999999999888888999999999


Q ss_pred             EEeCCCCcCCcccccc--ccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhcccc--CC
Q 047929          249 YLDLSYNQFNSTISDC--FSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAA--FE  324 (790)
Q Consensus       249 ~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~  324 (790)
                      +|++++|.+.+..+..  +..+++|++|++++|.+.+..+...+.++++|++|++++|.+....+..+     ..+  ++
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-----~~l~~~~  175 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-----EPLQGKT  175 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG-----HHHHHCS
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc-----ccccCCc
Confidence            9999999988755543  88999999999999998866554458899999999999998877665532     223  78


Q ss_pred             CCEEEccCCccccccchhhccCCC------CcEEEccCcccCCCCCcCcCC---CCCCCEEECcCCcCCCc--------C
Q 047929          325 LESLFLRGCKISGQLTNQLGLFKN------LHTLALSDNSVSGPLPPASGE---LSSLTYLDLSNNNLNGM--------I  387 (790)
Q Consensus       325 L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~L~~~~i~~~~~~~~~~---l~~L~~L~l~~n~~~~~--------~  387 (790)
                      |+.|++++|.+.+..+..+..+++      |+.|++++|.+.+..+..+..   ...++.+.+..+.+...        .
T Consensus       176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~  255 (844)
T 3j0a_A          176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP  255 (844)
T ss_dssp             SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred             cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence            999999999888777766665554      999999999888777766543   35778888774332111        1


Q ss_pred             Chhhhccc--cccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccc
Q 047929          388 SEIHFGNL--TELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW  465 (790)
Q Consensus       388 ~~~~~~~l--~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~  465 (790)
                      ....|.++  ++|+.++++.|.+....+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+..+.     
T Consensus       256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----  330 (844)
T 3j0a_A          256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-----  330 (844)
T ss_dssp             GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-----
T ss_pred             ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-----
Confidence            11233333  67888888888888777778888888888888888888877888888888888888888876543     


Q ss_pred             cccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccC
Q 047929          466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNI  545 (790)
Q Consensus       466 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~  545 (790)
                              +..+..+++|+.|++++|.+....+..|..+++|+.|++++|.++.+     ..+++|+.|++++|.+. .+
T Consensus       331 --------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l  396 (844)
T 3j0a_A          331 --------SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TL  396 (844)
T ss_dssp             --------SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CC
T ss_pred             --------HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cc
Confidence                    34556778888888888888877777788888888888888888743     23778888888888887 55


Q ss_pred             chhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeeccccccc
Q 047929          546 PTWMGERFSRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFEND  624 (790)
Q Consensus       546 ~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~  624 (790)
                      |.    ...+++.|++++|++++... ..+..+++|+.|++++|.+++..+...                          
T Consensus       397 ~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------------  446 (844)
T 3j0a_A          397 PK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT--------------------------  446 (844)
T ss_dssp             CC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS--------------------------
T ss_pred             cc----cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc--------------------------
Confidence            54    24678888888888875432 224578889999999988875433210                          


Q ss_pred             ceeeeeeeeeccchhhhhhcccceeEEEccCccCC-----CCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEE
Q 047929          625 YIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFS-----GEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESL  699 (790)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  699 (790)
                                       ...++.|+.|++++|.+.     +..+..+..+++|++|+|++|.+++..|..|.++++|+.|
T Consensus       447 -----------------~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  509 (844)
T 3j0a_A          447 -----------------PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL  509 (844)
T ss_dssp             -----------------SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred             -----------------cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence                             011345678999999987     3445668899999999999999998889999999999999


Q ss_pred             eCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcCCccCCccccCC-cccCC
Q 047929          700 DLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGA  756 (790)
Q Consensus       700 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~  756 (790)
                      ++++|++++..|..+.  ++|+.|++++|++.+.+|..  +.+|+.+++.+| -.|..
T Consensus       510 ~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          510 SLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICEC  563 (844)
T ss_dssp             EEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred             ECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccc
Confidence            9999999987777766  89999999999999988865  568999999999 45643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.7e-46  Score=427.77  Aligned_cols=509  Identities=18%  Similarity=0.240  Sum_probs=267.8

Q ss_pred             hHHHHHHHHHHhhcCCCCCCCCCCCCCC-----CCC--ccc------------CceeecCCCCcEEEEEcCCCCCCcccc
Q 047929            4 LESERVALIKLKQDFKDPSNHLASWIGD-----VDC--CEW------------GGVVCNNITGHVLELNLERSELGGKIN   64 (790)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~-----~~~--~~~------------~~~~c~~~~~~v~~L~L~~~~~~~~~~   64 (790)
                      ...|..||++||+++.+|     +|...     .++  |.|            .||.|+. .+||+.|+|+++++.|.+|
T Consensus       267 ~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip  340 (876)
T 4ecn_A          267 YIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVP  340 (876)
T ss_dssp             HHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEEC
T ss_pred             chHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCc
Confidence            457999999999999777     78322     355  999            9999985 6899999999999999999


Q ss_pred             ccCcCCCCCCEEeC-CCCCCCCCCcCccccCC-CCCC-----EE---------eC-CCCcccccCCCC---------CCC
Q 047929           65 PALVDLKHLNLLDL-SGNDFQGIQIPEYIGSM-DNLR-----YL---------NL-SGAGFAGWIPHQ---------LGN  118 (790)
Q Consensus        65 ~~l~~l~~L~~L~L-s~~~~~~~~l~~~~~~l-~~L~-----~L---------~L-s~~~~~~~lp~~---------l~~  118 (790)
                      ++++++++|++|+| ++|.+.+. .|-..... ..+.     .+         +. ....+.+.++..         +..
T Consensus       341 ~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~  419 (876)
T 4ecn_A          341 DAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK  419 (876)
T ss_dssp             GGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred             hHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence            99999999999999 77765533 11100000 0000     00         00 000000000000         000


Q ss_pred             CC--CCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCC
Q 047929          119 LS--NLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFS  196 (790)
Q Consensus       119 l~--~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~  196 (790)
                      ..  .++.+.+..                                                  ..|.+.. .|..+++++
T Consensus       420 ~~~l~l~~l~l~~--------------------------------------------------~~N~L~~-IP~~l~~L~  448 (876)
T 4ecn_A          420 DSRISLKDTQIGN--------------------------------------------------LTNRITF-ISKAIQRLT  448 (876)
T ss_dssp             CCCCCCCTTTTTC--------------------------------------------------CSCEEEE-ECGGGGGCT
T ss_pred             ccccchhhceecc--------------------------------------------------ccCcccc-hhHHHhcCC
Confidence            11  111111110                                                  1133333 233455555


Q ss_pred             CCCEEECCCCCCCCC----------------Ccchhcc--CCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCc-C
Q 047929          197 SLNALDLSGNLFGKT----------------SIPSWVF--GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQ-F  257 (790)
Q Consensus       197 ~L~~L~L~~~~l~~~----------------~lp~~l~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~  257 (790)
                      +|++|++++|.+++.                .+|..+.  .+++|++|++++|.+.+.+|..|+++++|++|++++|+ +
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI  528 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence            555555555555331                1566655  67777777777777666777777777777777777776 6


Q ss_pred             Cc-cccccccCC-------CCCCEEEccCcccccccCc-ccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEE
Q 047929          258 NS-TISDCFSNF-------DDLEYLSLGYNRLQGTISS-IGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESL  328 (790)
Q Consensus       258 ~~-~~~~~l~~l-------~~L~~L~l~~~~l~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L  328 (790)
                      ++ .+|..+..+       ++|+.|++++|.+. .+|. ..+.++++|+.|++++|                        
T Consensus       529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N------------------------  583 (876)
T 4ecn_A          529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN------------------------  583 (876)
T ss_dssp             CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS------------------------
T ss_pred             ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC------------------------
Confidence            65 455544333       35555555555554 4443 11444444444444444                        


Q ss_pred             EccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCC-CCEEECcCCcCCCcCChhhhccccccceeecCCCc
Q 047929          329 FLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSS-LTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS  407 (790)
Q Consensus       329 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~  407 (790)
                           .+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+...+..  +..+            
T Consensus       584 -----~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~--~~~~------------  641 (876)
T 4ecn_A          584 -----KVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNI--FNAK------------  641 (876)
T ss_dssp             -----CCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSC--CCTT------------
T ss_pred             -----Ccc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchh--hhcc------------
Confidence                 444 333 4555666666666666666 55555666666 66666666665422110  0000            


Q ss_pred             ceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCcc--CCCCCCcE
Q 047929          408 VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW--MNWPDLRV  485 (790)
Q Consensus       408 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~  485 (790)
                                                        ..++|+.|++++|.+.+.+|.          ++..+  ...++|+.
T Consensus       642 ----------------------------------~~~~L~~L~Ls~N~l~g~ip~----------l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          642 ----------------------------------SVYVMGSVDFSYNKIGSEGRN----------ISCSMDDYKGINAST  677 (876)
T ss_dssp             ----------------------------------CSSCEEEEECCSSCTTTTSSS----------CSSCTTTCCCCCEEE
T ss_pred             ----------------------------------ccCCCCEEECcCCcCCCcccc----------chhhhccccCCCcCE
Confidence                                              011233333333333322110          00000  12234555


Q ss_pred             EEccCCcccccCCcC-CCCCCCCCEEEccCCcccccCCccccC-------CCCCcEEECcCCcccccCchhhh-hcCCCC
Q 047929          486 LNLGNNKFTGSIPIS-MGTLTSLRSLNLRSNRLSGIIPVPFEN-------CSQLVALDMGENEFVGNIPTWMG-ERFSRL  556 (790)
Q Consensus       486 L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~l~~-------l~~L~~L~l~~n~~~~~~~~~~~-~~~~~L  556 (790)
                      |++++|.++ .+|.. +..+++|+.|++++|++..+....+..       +++|+.|++++|.+. .+|..+. ..+++|
T Consensus       678 L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L  755 (876)
T 4ecn_A          678 VTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL  755 (876)
T ss_dssp             EECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred             EEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence            555555555 22322 224555555555555555332222221       224555555555544 4444332 234455


Q ss_pred             cEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeecc
Q 047929          557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKG  636 (790)
Q Consensus       557 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  636 (790)
                      +.|++++|++++ +|..+..+++|+.|++++|+                                               
T Consensus       756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-----------------------------------------------  787 (876)
T 4ecn_A          756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-----------------------------------------------  787 (876)
T ss_dssp             CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-----------------------------------------------
T ss_pred             CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-----------------------------------------------
Confidence            555555555543 34444445555555554442                                               


Q ss_pred             chhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccC
Q 047929          637 FMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSS  716 (790)
Q Consensus       637 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~  716 (790)
                                     ++++|.+.+.+|..+..+++|++|+|++|.+ +.+|..+.  ++|+.|+|++|++....+..+..
T Consensus       788 ---------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~  849 (876)
T 4ecn_A          788 ---------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP  849 (876)
T ss_dssp             ---------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred             ---------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence                           1234566666677777777777777777777 46666554  57777777777776555555544


Q ss_pred             CCCCCEEECcCCc
Q 047929          717 LSFLNHLNLSDNK  729 (790)
Q Consensus       717 l~~L~~L~l~~n~  729 (790)
                      ...+..+.+.+|+
T Consensus       850 ~~~~~~~~L~~n~  862 (876)
T 4ecn_A          850 YIEAGMYVLLYDK  862 (876)
T ss_dssp             HHHTTCCEEECCT
T ss_pred             cccchheeecCCC
Confidence            4444444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.8e-44  Score=403.83  Aligned_cols=497  Identities=21%  Similarity=0.229  Sum_probs=294.5

Q ss_pred             CcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCC
Q 047929           34 CCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIP  113 (790)
Q Consensus        34 ~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp  113 (790)
                      .|.|.++ |+          .+++.++ .+|+.+.  ++|++|++++|.+.+. .|..+.++++|++|++++|++++..|
T Consensus         3 ~C~~~~~-c~----------~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~   67 (549)
T 2z81_A            3 SCDASGV-CD----------GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEG   67 (549)
T ss_dssp             EECTTSE-EE----------CTTSCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECT
T ss_pred             cCCCCce-EE----------CCCCccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccCh
Confidence            4889887 74          3455555 5565554  7899999999998865 56788899999999999999888777


Q ss_pred             CCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCcccccc-CcccC
Q 047929          114 HQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHF-APLAS  192 (790)
Q Consensus       114 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l  192 (790)
                      .++..+++|++|++++|.+...+.                            ..++++++|++|++++|.+... .+..+
T Consensus        68 ~~~~~l~~L~~L~Ls~n~l~~~~~----------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  119 (549)
T 2z81_A           68 DAFYSLGSLEHLDLSDNHLSSLSS----------------------------SWFGPLSSLKYLNLMGNPYQTLGVTSLF  119 (549)
T ss_dssp             TTTTTCTTCCEEECTTSCCCSCCH----------------------------HHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred             hhccccccCCEEECCCCccCccCH----------------------------HHhccCCCCcEEECCCCcccccchhhhh
Confidence            888888888888888775432111                            1244444455555544444432 12344


Q ss_pred             cCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCC
Q 047929          193 ANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE  272 (790)
Q Consensus       193 ~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  272 (790)
                      +++++|++|++++|.+.+ .+|                       +..|.++++|++|++++|.+.+..+..+..+++|+
T Consensus       120 ~~l~~L~~L~L~~n~~~~-~~~-----------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  175 (549)
T 2z81_A          120 PNLTNLQTLRIGNVETFS-EIR-----------------------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH  175 (549)
T ss_dssp             TTCTTCCEEEEEESSSCC-EEC-----------------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             hccCCccEEECCCCcccc-ccC-----------------------HhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence            444555555555444221 222                       23344444444444444444444444444444444


Q ss_pred             EEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccch----hhccCCC
Q 047929          273 YLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTN----QLGLFKN  348 (790)
Q Consensus       273 ~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~  348 (790)
                      +|+++.|.+. .++...+..+++|+.|++++|.+.+.......  .....++|+.|++++|.+.+..+.    .+..+++
T Consensus       176 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~  252 (549)
T 2z81_A          176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLP--VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE  252 (549)
T ss_dssp             EEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCS--SCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred             eEecccCccc-ccchhhHhhcccccEEEccCCccccccccccc--hhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence            4444444432 22222223344455555555444332100000  111234555555555554433222    2334556


Q ss_pred             CcEEEccCcccCCCCC------cCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccc
Q 047929          349 LHTLALSDNSVSGPLP------PASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQL  422 (790)
Q Consensus       349 L~~L~L~~~~i~~~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L  422 (790)
                      |+.+++++|.+.+...      ..+..+++++.                                               
T Consensus       253 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~-----------------------------------------------  285 (549)
T 2z81_A          253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVET-----------------------------------------------  285 (549)
T ss_dssp             CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE-----------------------------------------------
T ss_pred             ccccccccccccccccccccchhhhhhhccccc-----------------------------------------------
Confidence            6666666665442210      11122233333                                               


Q ss_pred             eEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCC-
Q 047929          423 LALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-  501 (790)
Q Consensus       423 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-  501 (790)
                                                |++.++.+.....        ...++..+...++|+.|++++|.+. .+|..+ 
T Consensus       286 --------------------------L~l~~~~i~~~~~--------~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~  330 (549)
T 2z81_A          286 --------------------------VTIRRLHIPQFYL--------FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFS  330 (549)
T ss_dssp             --------------------------EEEESCBCSCGGG--------SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHH
T ss_pred             --------------------------ccccccccchhhh--------cccchhhhhhcccceEEEeccCccc-cCCHHHH
Confidence                                      3333332221100        0000011112345666666666655 344333 


Q ss_pred             CCCCCCCEEEccCCcccccCC---ccccCCCCCcEEECcCCcccccCc-hhhhhcCCCCcEEEcCCCcccccCCccccCC
Q 047929          502 GTLTSLRSLNLRSNRLSGIIP---VPFENCSQLVALDMGENEFVGNIP-TWMGERFSRLRILNLRSNKLHGIFPIQICHL  577 (790)
Q Consensus       502 ~~l~~L~~L~L~~n~i~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l  577 (790)
                      ..+++|++|++++|++++..+   ..+..+++|+.|++++|.+.+..+ ...+..+++|++|++++|+++ .+|..+..+
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~  409 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP  409 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence            346667777777777665432   235666777777777777753221 123446888888888888887 467777888


Q ss_pred             CCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCcc
Q 047929          578 SSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNN  657 (790)
Q Consensus       578 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  657 (790)
                      ++|++|++++|.+. .+|..+                                              ++.|+.|++++|+
T Consensus       410 ~~L~~L~Ls~N~l~-~l~~~~----------------------------------------------~~~L~~L~Ls~N~  442 (549)
T 2z81_A          410 EKMRFLNLSSTGIR-VVKTCI----------------------------------------------PQTLEVLDVSNNN  442 (549)
T ss_dssp             TTCCEEECTTSCCS-CCCTTS----------------------------------------------CTTCSEEECCSSC
T ss_pred             ccccEEECCCCCcc-cccchh----------------------------------------------cCCceEEECCCCC
Confidence            89999999999876 233211                                              2346789999999


Q ss_pred             CCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCC
Q 047929          658 FSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPS  736 (790)
Q Consensus       658 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  736 (790)
                      +++.+    ..+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++|++.+..|.
T Consensus       443 l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          443 LDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             CSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             hhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            88542    57899999999999998 6676 46789999999999999988888899999999999999999887774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=394.50  Aligned_cols=490  Identities=22%  Similarity=0.191  Sum_probs=336.8

Q ss_pred             CCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEe
Q 047929          172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD  251 (790)
Q Consensus       172 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  251 (790)
                      +.+++|++++|.+..+.+.+|..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..|.++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            456677777777666666666666777777777666643 2234455666666666666666655556666666666666


Q ss_pred             CCCCcCCccccccccCCCCCCEEEccCccccc-ccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCC----C
Q 047929          252 LSYNQFNSTISDCFSNFDDLEYLSLGYNRLQG-TISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFEL----E  326 (790)
Q Consensus       252 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L----~  326 (790)
                      +++|.+.+..+..++.+++|++|++++|.+.+ .+|.. +.++++|++|++++|.+....+.     .+..+.+|    +
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~~~~  180 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCT-----DLRVLHQMPLLNL  180 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGG-----GGHHHHTCTTCCC
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecHH-----Hccchhccchhhh
Confidence            66666665544456666666666666666553 23333 55566666666666655444332     12222233    4


Q ss_pred             EEEccCCccccccchhhccCCCCcEEEccCcccCC-CCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCC
Q 047929          327 SLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSG-PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG  405 (790)
Q Consensus       327 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~  405 (790)
                      .+++++|.+.+..+..+... +|++|++++|.... .++..+..++.++.+.+....+...                   
T Consensus       181 ~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~-------------------  240 (570)
T 2z63_A          181 SLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-------------------  240 (570)
T ss_dssp             EEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC-------------------
T ss_pred             hcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc-------------------
Confidence            55555555544444443332 45555554442211 1122223333333332221111000                   


Q ss_pred             CcceeecCCCCCCc--ccceEEEcCCC-CCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCC
Q 047929          406 NSVNFKINSKWVPP--FQLLALRLRSC-HLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPD  482 (790)
Q Consensus       406 ~~~~~~~~~~~~~~--~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~  482 (790)
                      ..+.......+..+  ..++.+.+..+ .+.+..+..+..+++|++|++++|.+.+              +|..+..+ +
T Consensus       241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--------------l~~~~~~~-~  305 (570)
T 2z63_A          241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--------------VKDFSYNF-G  305 (570)
T ss_dssp             SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS--------------CCBCCSCC-C
T ss_pred             hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh--------------hhhhhccC-C
Confidence            00011111111111  23566777776 5566778889999999999999998764              34445666 9


Q ss_pred             CcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccC--chhhhhcCCCCcEEE
Q 047929          483 LRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNI--PTWMGERFSRLRILN  560 (790)
Q Consensus       483 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~  560 (790)
                      |+.|++++|.+. .+|.  ..+++|+.|++++|.+....+.  ..+++|++|++++|.+.+..  +..+ ..+++|++|+
T Consensus       306 L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~  379 (570)
T 2z63_A          306 WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD-FGTTSLKYLD  379 (570)
T ss_dssp             CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHH-HTCSCCCEEE
T ss_pred             ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccc-cccCccCEEE
Confidence            999999999998 5554  4689999999999998866554  78899999999999987543  4555 4789999999


Q ss_pred             cCCCcccccCCccccCCCCCcEEEccCCcccccCC-cchhccccccccCCccccceeecccccccceeeeeeeeeccchh
Q 047929          561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP-KCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMV  639 (790)
Q Consensus       561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  639 (790)
                      +++|++.+..+. +..+++|+.|++++|.+.+..| ..+.++                                      
T Consensus       380 l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l--------------------------------------  420 (570)
T 2z63_A          380 LSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL--------------------------------------  420 (570)
T ss_dssp             CCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC--------------------------------------
T ss_pred             CCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcC--------------------------------------
Confidence            999999876554 8999999999999999986655 234443                                      


Q ss_pred             hhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCC-cCCCccccCCCCCCEEeCcCccCccccCccccCCC
Q 047929          640 EYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFI-GKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS  718 (790)
Q Consensus       640 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~  718 (790)
                            +.|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++.+..|..+..++
T Consensus       421 ------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          421 ------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             ------TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ------CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence                  34579999999999888999999999999999999997 57889999999999999999999988899999999


Q ss_pred             CCCEEECcCCcccccCCCC-CcCCccCCccccCCccc
Q 047929          719 FLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDLC  754 (790)
Q Consensus       719 ~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l~  754 (790)
                      +|++|++++|++.+.+|.. ..+.+|+.+++.+|++.
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence            9999999999999877765 56889999999999664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.1e-41  Score=389.53  Aligned_cols=530  Identities=22%  Similarity=0.213  Sum_probs=354.4

Q ss_pred             CCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCccccccc
Q 047929           58 ELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVE  137 (790)
Q Consensus        58 ~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~  137 (790)
                      +++ .+|+.+.  +.+++|+|++|.++.. .+..|.++++|++|+|++|++++..|.+|.++++|++|+|++|++...+.
T Consensus        42 ~l~-~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           42 NFY-KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             CCS-SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             CcC-ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            444 4555443  4789999999999854 35678999999999999999988677788999999999999887543322


Q ss_pred             CccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhc
Q 047929          138 DISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWV  217 (790)
Q Consensus       138 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l  217 (790)
                      .                            .+.++++|++|++++|.+..+++..|+++++|++|++++|.+.....|..+
T Consensus       118 ~----------------------------~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~  169 (635)
T 4g8a_A          118 G----------------------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF  169 (635)
T ss_dssp             G----------------------------GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             H----------------------------HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh
Confidence            1                            567778888888888888888888888899999999999988766778888


Q ss_pred             cCCCCCcEEEccCCcCCCCCCccCCCCCCC----cEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCC
Q 047929          218 FGLSDLVFLDLSSNIFRGPIPDGFKNLTSL----RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL  293 (790)
Q Consensus       218 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l  293 (790)
                      ..+++|++|++++|++.+..+..+..+.++    ..++++.|.+....+..+. ...++.+++.+|..........+..+
T Consensus       170 ~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l  248 (635)
T 4g8a_A          170 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGL  248 (635)
T ss_dssp             GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTT
T ss_pred             ccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCC
Confidence            888999999999998887777666555443    4677888887765554443 34566777777655433333335666


Q ss_pred             CCCCEEEccCCCCCCCcc-hhhhhhhccccCCCCEEEccCCccc---cccchhhccCCCCcEEEccCcccCCCCCcCcCC
Q 047929          294 TFIKTLDLSFNELGQDIS-EILDIISACAAFELESLFLRGCKIS---GQLTNQLGLFKNLHTLALSDNSVSGPLPPASGE  369 (790)
Q Consensus       294 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~  369 (790)
                      ..++...+..+....... .......+.....+....+..+...   ......+....+++.+.+.++.+....  .+..
T Consensus       249 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~  326 (635)
T 4g8a_A          249 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSY  326 (635)
T ss_dssp             TTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGS
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--cccc
Confidence            666655554322211100 0000001111222222222222111   011222333344444444444433211  1233


Q ss_pred             CCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEE
Q 047929          370 LSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKL  449 (790)
Q Consensus       370 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  449 (790)
                      ...++.|++.+|.+....                                                    ...+..|+.+
T Consensus       327 ~~~L~~L~l~~~~~~~~~----------------------------------------------------~~~l~~L~~l  354 (635)
T 4g8a_A          327 NFGWQHLELVNCKFGQFP----------------------------------------------------TLKLKSLKRL  354 (635)
T ss_dssp             CCCCSEEEEESCEESSCC----------------------------------------------------CCBCTTCCEE
T ss_pred             chhhhhhhcccccccCcC----------------------------------------------------cccchhhhhc
Confidence            344444444444332211                                                    1123445555


Q ss_pred             EccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccc--cCCcCCCCCCCCCEEEccCCcccccCCccccC
Q 047929          450 DISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTG--SIPISMGTLTSLRSLNLRSNRLSGIIPVPFEN  527 (790)
Q Consensus       450 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~  527 (790)
                      ++..+.....               .....+++|+.+++++|.+..  ..+..+..+.+|+.+++..+.+... +..+..
T Consensus       355 ~l~~n~~~~~---------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~  418 (635)
T 4g8a_A          355 TFTSNKGGNA---------------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLG  418 (635)
T ss_dssp             EEESCCSCCB---------------CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTT
T ss_pred             ccccccCCCC---------------cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccc
Confidence            6555554322               112345677777777776642  2333445567778888877776643 345667


Q ss_pred             CCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccc-cCCcchhccccccc
Q 047929          528 CSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSG-SVPKCINNFTAMAT  606 (790)
Q Consensus       528 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~  606 (790)
                      +++|+.+++.++......+...+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+.. ..|..+..++    
T Consensus       419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~----  494 (635)
T 4g8a_A          419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR----  494 (635)
T ss_dssp             CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT----
T ss_pred             cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc----
Confidence            78888888887777666665555678888888888888888778888888899999999887543 3455554444    


Q ss_pred             cCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCC
Q 047929          607 IGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKI  686 (790)
Q Consensus       607 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  686 (790)
                                                              .|++|||++|++.+..|..|.++++|++|+|++|++++..
T Consensus       495 ----------------------------------------~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  534 (635)
T 4g8a_A          495 ----------------------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  534 (635)
T ss_dssp             ----------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             ----------------------------------------ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence                                                    3568999999998888888999999999999999999888


Q ss_pred             CccccCCCCCCEEeCcCccCccccCccccCC-CCCCEEECcCCcccccC
Q 047929          687 PETIGNMRSIESLDLSGNQISGKIPQSMSSL-SFLNHLNLSDNKLVGKI  734 (790)
Q Consensus       687 p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~  734 (790)
                      |..|.++++|++|++++|++++..|..+..+ ++|+.|++++||+...-
T Consensus       535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            8899999999999999999999999999888 68999999999998644

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-41  Score=383.46  Aligned_cols=474  Identities=19%  Similarity=0.220  Sum_probs=305.3

Q ss_pred             CCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEe
Q 047929          172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD  251 (790)
Q Consensus       172 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  251 (790)
                      ++|++|++++|.+..+.+..+.++++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..|+++++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            455555555555555555555556666666666665543 2234455555666666666655554444455566666666


Q ss_pred             CCCCcCCcc-ccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEc
Q 047929          252 LSYNQFNST-ISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFL  330 (790)
Q Consensus       252 l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  330 (790)
                      +++|.+.+. .+..+..+++|++|++++|...+.++...+..+++|++|++++|.+.+..+.     .+..+++|++|++
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~l~~l~~L~~L~l  179 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ-----SLKSIRDIHHLTL  179 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-----TTTTCSEEEEEEE
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh-----hhhccccCceEec
Confidence            666655542 2344555566666666655533344433355555556666655555544333     3344455556666


Q ss_pred             cCCccccccchhhccCCCCcEEEccCcccCCCC--C-cCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCc
Q 047929          331 RGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL--P-PASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS  407 (790)
Q Consensus       331 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~--~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~  407 (790)
                      ++|.+.......+..+++|++|++++|.+.+..  + .....+++|+.|++++|.+.+....                  
T Consensus       180 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------------------  241 (549)
T 2z81_A          180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN------------------  241 (549)
T ss_dssp             ECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH------------------
T ss_pred             ccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH------------------
Confidence            555554322222344666777777777666431  1 1223456666666666655432211                  


Q ss_pred             ceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEE
Q 047929          408 VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLN  487 (790)
Q Consensus       408 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  487 (790)
                                                 .++..+..+++|+.+++++|.+.+....       .......+..+++++.|.
T Consensus       242 ---------------------------~l~~~~~~~~~L~~l~l~~~~~~~~~~~-------~~~~~~~~~~l~~L~~L~  287 (549)
T 2z81_A          242 ---------------------------ELLKLLRYILELSEVEFDDCTLNGLGDF-------NPSESDVVSELGKVETVT  287 (549)
T ss_dssp             ---------------------------HHHGGGGGCTTCCEEEEESCEEECCSCC-------CCCTTTCCCCCTTCCEEE
T ss_pred             ---------------------------HHHHHhhhhccccccccccccccccccc-------cccchhhhhhhccccccc
Confidence                                       0111234456677777777766543110       001112345678999999


Q ss_pred             ccCCcccccC-----CcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchh--hhhcCCCCcEEE
Q 047929          488 LGNNKFTGSI-----PISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTW--MGERFSRLRILN  560 (790)
Q Consensus       488 l~~n~~~~~~-----~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~~L~~L~  560 (790)
                      +.++.+....     +..+...++|+.|++++|++..+....+..+++|++|++++|.+.+.+|..  ....+++|++|+
T Consensus       288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~  367 (549)
T 2z81_A          288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV  367 (549)
T ss_dssp             EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred             ccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence            9998765321     111223578999999999998544444468999999999999998766533  124689999999


Q ss_pred             cCCCcccccCC--ccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccch
Q 047929          561 LRSNKLHGIFP--IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFM  638 (790)
Q Consensus       561 L~~n~~~~~~~--~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  638 (790)
                      +++|++++..+  ..+..+++|++|++++|.++ .+|..+..++                                    
T Consensus       368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~------------------------------------  410 (549)
T 2z81_A          368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE------------------------------------  410 (549)
T ss_dssp             CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT------------------------------------
T ss_pred             ccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc------------------------------------
Confidence            99999986532  45788999999999999988 5665544433                                    


Q ss_pred             hhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCC
Q 047929          639 VEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS  718 (790)
Q Consensus       639 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~  718 (790)
                              .|++|++++|.+. .+|..+  .++|++|++++|++++..    ..+++|++|++++|++. .+|. ...++
T Consensus       411 --------~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~  473 (549)
T 2z81_A          411 --------KMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFP  473 (549)
T ss_dssp             --------TCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCT
T ss_pred             --------cccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCc
Confidence                    4578999999998 455444  368999999999998642    57899999999999999 5676 56799


Q ss_pred             CCCEEECcCCcccccCCCC-CcCCccCCccccCCcc-cCCC
Q 047929          719 FLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDL-CGAP  757 (790)
Q Consensus       719 ~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l-~~~~  757 (790)
                      +|+.|++++|++.+.+|.. ..+.+|+.+++.+|++ |..|
T Consensus       474 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999999999999877764 5688999999999954 4443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-41  Score=379.22  Aligned_cols=394  Identities=16%  Similarity=0.173  Sum_probs=219.6

Q ss_pred             EEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcC
Q 047929           50 LELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG  129 (790)
Q Consensus        50 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~  129 (790)
                      ++|+++++.++ .+|..+.  ++|++|++++|.+.+. .|+.|.++++|++|++++|++++..|.+++++++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            46788888887 5666555  7888888888888755 456788888888888888888886677888888888888887


Q ss_pred             CcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCC
Q 047929          130 SYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFG  209 (790)
Q Consensus       130 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~  209 (790)
                      |.+..                                                    ++..   .+++|++|++++|.+.
T Consensus        79 N~l~~----------------------------------------------------lp~~---~l~~L~~L~L~~N~l~  103 (520)
T 2z7x_B           79 NKLVK----------------------------------------------------ISCH---PTVNLKHLDLSFNAFD  103 (520)
T ss_dssp             SCCCE----------------------------------------------------EECC---CCCCCSEEECCSSCCS
T ss_pred             Cceee----------------------------------------------------cCcc---ccCCccEEeccCCccc
Confidence            75431                                                    1111   3444555555555444


Q ss_pred             CCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCC--cEEeCCCCcC--CccccccccCCC-CCCEEEccCcccccc
Q 047929          210 KTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSL--RYLDLSYNQF--NSTISDCFSNFD-DLEYLSLGYNRLQGT  284 (790)
Q Consensus       210 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~l~~~~l~~~  284 (790)
                      +..+|..+..+++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .+..|..+..+. ....+++++|.+.+.
T Consensus       104 ~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~  180 (520)
T 2z7x_B          104 ALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF  180 (520)
T ss_dssp             SCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCC
T ss_pred             cccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhh
Confidence            33344455555555555555555443   234444444  5555555555  444444444333 122344555555555


Q ss_pred             cCcccccCCCCCCEEEccCCCCCCCcchhhh-hhhccccCCCCEEEccCCccccccchhh---ccCCCCcEEEccCcccC
Q 047929          285 ISSIGLENLTFIKTLDLSFNELGQDISEILD-IISACAAFELESLFLRGCKISGQLTNQL---GLFKNLHTLALSDNSVS  360 (790)
Q Consensus       285 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~L~~~~i~  360 (790)
                      ++...+..+++|+.+++++|........... ...+..+++|+.|+++++.+.+.....+   ...++|++|++++|.+.
T Consensus       181 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (520)
T 2z7x_B          181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ  260 (520)
T ss_dssp             CCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEE
T ss_pred             hhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccccc
Confidence            5554456666666666666541111100000 0133455666666666665553222111   12357788888888777


Q ss_pred             CCCCcCc-----CCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCC
Q 047929          361 GPLPPAS-----GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPH  435 (790)
Q Consensus       361 ~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  435 (790)
                      +.+|..+     +.++.|+.+++++|.+ .. +.                                              
T Consensus       261 ~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~-p~----------------------------------------------  292 (520)
T 2z7x_B          261 GQLDFRDFDYSGTSLKALSIHQVVSDVF-GF-PQ----------------------------------------------  292 (520)
T ss_dssp             SCCCCCCCCCCSCCCCEEEEEEEEECCC-CS-CT----------------------------------------------
T ss_pred             CccccchhhcccccCceeEeccccccce-ec-ch----------------------------------------------
Confidence            6666665     4555555555555443 11 10                                              


Q ss_pred             CCcccccC---CCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEc
Q 047929          436 FPSWLHSQ---KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNL  512 (790)
Q Consensus       436 ~~~~~~~~---~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  512 (790)
                        ..+..+   .+|+.|++++|.+...                                     .  .+..+++|++|++
T Consensus       293 --~~~~~~~~~~~L~~L~l~~n~l~~~-------------------------------------~--~~~~l~~L~~L~L  331 (520)
T 2z7x_B          293 --SYIYEIFSNMNIKNFTVSGTRMVHM-------------------------------------L--CPSKISPFLHLDF  331 (520)
T ss_dssp             --HHHHHHHHTCCCSEEEEESSCCCCC-------------------------------------C--CCSSCCCCCEEEC
T ss_pred             --hhhhcccccCceeEEEcCCCccccc-------------------------------------c--chhhCCcccEEEe
Confidence              011111   2344444444443221                                     1  0134455555555


Q ss_pred             cCCcccccCCccccCCCCCcEEECcCCcccc--cCchhhhhcCCCCcEEEcCCCcccccCCc-cccCCCCCcEEEccCCc
Q 047929          513 RSNRLSGIIPVPFENCSQLVALDMGENEFVG--NIPTWMGERFSRLRILNLRSNKLHGIFPI-QICHLSSLQILDVAYNR  589 (790)
Q Consensus       513 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~ls~n~  589 (790)
                      ++|++++..+..+..+++|++|++++|.+.+  .+|..+ ..+++|++|++++|++++.+|. .+..+++|++|++++|.
T Consensus       332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT-TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH-hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence            5555555455555555566666666665553  333333 3577777777777777763343 36677888888888887


Q ss_pred             ccccCC
Q 047929          590 LSGSVP  595 (790)
Q Consensus       590 l~~~~p  595 (790)
                      +++..|
T Consensus       411 l~~~~~  416 (520)
T 2z7x_B          411 LTDTIF  416 (520)
T ss_dssp             CCGGGG
T ss_pred             CCcchh
Confidence            764433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.6e-41  Score=385.91  Aligned_cols=346  Identities=18%  Similarity=0.314  Sum_probs=229.7

Q ss_pred             ccccCCCCEEEccCCccccc-----------------cchhhc--cCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECc
Q 047929          319 ACAAFELESLFLRGCKISGQ-----------------LTNQLG--LFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLS  379 (790)
Q Consensus       319 ~~~~~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~  379 (790)
                      +..+++|++|++++|.+++.                 +|..+.  .+++|++|++++|.+.+.+|..++.+++|++|+++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            34455555555555555543                 666666  77888888888888777777778888888888888


Q ss_pred             CCc-CCC-cCChhhhccc------cccceeecCCCcceeecCC--CCCCcccceEEEcCCCCCCCCCCcccccCCCCCEE
Q 047929          380 NNN-LNG-MISEIHFGNL------TELAFFYANGNSVNFKINS--KWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKL  449 (790)
Q Consensus       380 ~n~-~~~-~~~~~~~~~l------~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  449 (790)
                      +|. +++ ..+. .++.+      ++|+.+++.+|.+. .++.  .+..+++|+.|++++|.+.+.+| .+..+++|++|
T Consensus       282 ~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L  358 (636)
T 4eco_A          282 CNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL  358 (636)
T ss_dssp             TCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred             CCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence            887 665 3332 33333      67777777777666 5555  56666677777777777766666 66777777777


Q ss_pred             EccCCccCCCcccccccccccccCCCccCCCCC-CcEEEccCCcccccCCcCCCCCC--CCCEEEccCCcccccCCcccc
Q 047929          450 DISNTRISDIIPRWFWNSIYQDTIPDCWMNWPD-LRVLNLGNNKFTGSIPISMGTLT--SLRSLNLRSNRLSGIIPVPFE  526 (790)
Q Consensus       450 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~l~  526 (790)
                      ++++|.+.              .+|..+..+++ |++|++++|.++ .+|..+..++  +|+.|++++|.+.+..|..+.
T Consensus       359 ~L~~N~l~--------------~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          359 NLAYNQIT--------------EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             ECCSSEEE--------------ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             ECCCCccc--------------cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence            77777754              23444556666 777777777777 5666655543  677777777777776666666


Q ss_pred             -------CCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCC-------CCCcEEEccCCcccc
Q 047929          527 -------NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHL-------SSLQILDVAYNRLSG  592 (790)
Q Consensus       527 -------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l-------~~L~~L~ls~n~l~~  592 (790)
                             .+++|+.|++++|.+. .+|..++..+++|++|++++|+++...+..+...       ++|+.|++++|.++ 
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-  501 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-  501 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-
T ss_pred             ccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-
Confidence                   6667777777777776 6666666567777777777777773332223222       26777777777776 


Q ss_pred             cCCcchh--ccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCC
Q 047929          593 SVPKCIN--NFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLK  670 (790)
Q Consensus       593 ~~p~~l~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  670 (790)
                      .+|..+.  .++                                            .|+.|+|++|.+.+ +|..+..++
T Consensus       502 ~lp~~~~~~~l~--------------------------------------------~L~~L~Ls~N~l~~-ip~~~~~l~  536 (636)
T 4eco_A          502 KLSDDFRATTLP--------------------------------------------YLVGIDLSYNSFSK-FPTQPLNSS  536 (636)
T ss_dssp             BCCGGGSTTTCT--------------------------------------------TCCEEECCSSCCSS-CCCGGGGCS
T ss_pred             ccChhhhhccCC--------------------------------------------CcCEEECCCCCCCC-cChhhhcCC
Confidence            4554433  333                                            34567777777775 677777777


Q ss_pred             CCCEEeC------CCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccc
Q 047929          671 GLQSLNL------SHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG  732 (790)
Q Consensus       671 ~L~~L~L------~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  732 (790)
                      +|++|++      ++|.+.+.+|.++..+++|++|++++|++ +.+|..+.  ++|+.|++++|++..
T Consensus       537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            7777777      44666667777777777777777777777 35666554  677777777776654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.6e-41  Score=373.90  Aligned_cols=460  Identities=20%  Similarity=0.198  Sum_probs=259.0

Q ss_pred             CEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCC
Q 047929          175 KVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY  254 (790)
Q Consensus       175 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  254 (790)
                      ++|++++|.++.++....   ++|++|++++|.+.+ ..|..+..+++|++|++++|++.+..|..|+++++|++|++++
T Consensus         3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCccccccccc---ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            456666666665543322   666666666666643 2334566666666666666666655566666666666666666


Q ss_pred             CcCCccccccccCCCCCCEEEccCccccc-ccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCC--CEEEcc
Q 047929          255 NQFNSTISDCFSNFDDLEYLSLGYNRLQG-TISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFEL--ESLFLR  331 (790)
Q Consensus       255 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L--~~L~l~  331 (790)
                      |++.. +|..  .+++|++|++++|.+.+ .+|.. +..+++|++|++++|.+...        .+..+++|  +.|+++
T Consensus        79 N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~--------~~~~l~~L~L~~L~l~  146 (520)
T 2z7x_B           79 NKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEKS--------SVLPIAHLNISKVLLV  146 (520)
T ss_dssp             SCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCGG--------GGGGGTTSCEEEEEEE
T ss_pred             Cceee-cCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccchh--------hccccccceeeEEEee
Confidence            66663 2332  56666666666666654 23333 56666666666666655431        22233344  555555


Q ss_pred             CCcc--ccccchhhccCC-CCcEEEccCcccCCCCC-cCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCc
Q 047929          332 GCKI--SGQLTNQLGLFK-NLHTLALSDNSVSGPLP-PASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS  407 (790)
Q Consensus       332 ~~~~--~~~~~~~l~~l~-~L~~L~L~~~~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~  407 (790)
                      +|.+  .+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.|++++|.......                  .
T Consensus       147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------~  208 (520)
T 2z7x_B          147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS------------------Y  208 (520)
T ss_dssp             ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH------------------H
T ss_pred             cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc------------------e
Confidence            5555  334444433332 12233444444433222 233344445555444443000000                  0


Q ss_pred             ceeecCCCCCCcccceEEEcCCCCCCCCCCccc---ccCCCCCEEEccCCccCCCcccccccccccccCCCcc-----CC
Q 047929          408 VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWL---HSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW-----MN  479 (790)
Q Consensus       408 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~  479 (790)
                      +....+ .+..+++|+.|++++|.+.+..+..+   ...++|++|++++|.+.+.             +|..+     ..
T Consensus       209 ~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-------------~p~~~~~~~~~~  274 (520)
T 2z7x_B          209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ-------------LDFRDFDYSGTS  274 (520)
T ss_dssp             HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC-------------CCCCCCCCCSCC
T ss_pred             eecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc-------------cccchhhccccc
Confidence            111111 22333444444444443332111110   1134677777777765532             22223     56


Q ss_pred             CCCCcEEEccCCcccccCC-cCCCCC---CCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCC
Q 047929          480 WPDLRVLNLGNNKFTGSIP-ISMGTL---TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR  555 (790)
Q Consensus       480 l~~L~~L~l~~n~~~~~~~-~~~~~l---~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  555 (790)
                      +++|+.+++++|.+  .+| ..+..+   ++|+.|++++|++....  .+..+++|++|++++|.+.+.+|..+. .+++
T Consensus       275 l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~  349 (520)
T 2z7x_B          275 LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTE  349 (520)
T ss_dssp             CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSS
T ss_pred             CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCC
Confidence            67777777777776  233 222222   56777777777765432  125667777777777777766666553 6777


Q ss_pred             CcEEEcCCCcccc--cCCccccCCCCCcEEEccCCcccccCCcc-hhccccccccCCccccceeecccccccceeeeeee
Q 047929          556 LRILNLRSNKLHG--IFPIQICHLSSLQILDVAYNRLSGSVPKC-INNFTAMATIGSHHQVKAIYHASFENDYIVEEISL  632 (790)
Q Consensus       556 L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  632 (790)
                      |++|++++|++++  ..|..+..+++|++|++++|.+.+.+|.. +..                                
T Consensus       350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~--------------------------------  397 (520)
T 2z7x_B          350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW--------------------------------  397 (520)
T ss_dssp             CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC--------------------------------
T ss_pred             CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc--------------------------------
Confidence            7777777777765  33455677777777777777776544432 222                                


Q ss_pred             eeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCc
Q 047929          633 VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQ  712 (790)
Q Consensus       633 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  712 (790)
                                  ++.|++|++++|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++. +|.
T Consensus       398 ------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~  461 (520)
T 2z7x_B          398 ------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPD  461 (520)
T ss_dssp             ------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCT
T ss_pred             ------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCH
Confidence                        23456777777777766655543  67777888888777 666666677778888888887774 444


Q ss_pred             -cccCCCCCCEEECcCCcccccCC
Q 047929          713 -SMSSLSFLNHLNLSDNKLVGKIP  735 (790)
Q Consensus       713 -~l~~l~~L~~L~l~~n~l~~~~p  735 (790)
                       .+..+++|++|++++|++.+..+
T Consensus       462 ~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          462 GIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHhccCCcccEEECcCCCCcccCC
Confidence             37777778888888877776544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.3e-38  Score=360.48  Aligned_cols=525  Identities=21%  Similarity=0.191  Sum_probs=353.7

Q ss_pred             eCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCC
Q 047929           77 DLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDV  156 (790)
Q Consensus        77 ~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~  156 (790)
                      +-++-.++  ++|..+.  +++++|||++|++++..+.+|.++++|++|+|++|.+...++.                  
T Consensus        37 ~c~~~~l~--~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~------------------   94 (635)
T 4g8a_A           37 QCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG------------------   94 (635)
T ss_dssp             ECTTSCCS--SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT------------------
T ss_pred             ECCCCCcC--ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh------------------
Confidence            44444555  4676553  5799999999999997778899999999999998875433221                  


Q ss_pred             CCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcc-hhccCCCCCcEEEccCCcCCC
Q 047929          157 DLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIP-SWVFGLSDLVFLDLSSNIFRG  235 (790)
Q Consensus       157 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp-~~l~~l~~L~~L~l~~~~~~~  235 (790)
                                ++.++++|++|++++|++..+++.+|.++++|++|++++|.++.  +| ..+..+++|++|++++|.+.+
T Consensus        95 ----------~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~~~~L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A           95 ----------AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLIQS  162 (635)
T ss_dssp             ----------TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC--STTCCCTTCTTCCEEECCSSCCCC
T ss_pred             ----------HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC--CChhhhhcCcccCeeccccCcccc
Confidence                      56677788888888888888888888888888888888887754  43 346777888888888887764


Q ss_pred             -CCCccCCCCCCCcEEeCCCCcCCccccccccCCCCC----CEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCc
Q 047929          236 -PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDL----EYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDI  310 (790)
Q Consensus       236 -~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  310 (790)
                       ..|..++.+++|++|++++|++.+..+..+..+.++    ..++++.|.+.. ++.. ......++.+++.++..... 
T Consensus       163 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~-~~~~~~~~~l~l~~n~~~~~-  239 (635)
T 4g8a_A          163 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPG-AFKEIRLHKLTLRNNFDSLN-  239 (635)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTT-TTTTCEEEEEEEESCCSSHH-
T ss_pred             CCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc-cCcc-cccchhhhhhhhhccccccc-
Confidence             356667777888888888887777666665544333    345666666542 2222 12223344455544432211 


Q ss_pred             chhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCccc------CCCCCcCcCCCCCCCEEECcCCcCC
Q 047929          311 SEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSV------SGPLPPASGELSSLTYLDLSNNNLN  384 (790)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i------~~~~~~~~~~l~~L~~L~l~~n~~~  384 (790)
                                                 ..+..+..+..++...+..+..      .......+..+..++..++..+...
T Consensus       240 ---------------------------~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~  292 (635)
T 4g8a_A          240 ---------------------------VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD  292 (635)
T ss_dssp             ---------------------------HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred             ---------------------------ccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence                                       1122233334444333322111      1111222233333433333322211


Q ss_pred             CcC--ChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCccc
Q 047929          385 GMI--SEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPR  462 (790)
Q Consensus       385 ~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~  462 (790)
                      ...  ....+..+..+..+                        .+.++.+...  ..+.....++.|++.+|.+..+.. 
T Consensus       293 ~~~~~~~~~~~~~~~l~~l------------------------~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~-  345 (635)
T 4g8a_A          293 YYLDGIIDLFNCLTNVSSF------------------------SLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT-  345 (635)
T ss_dssp             SCEEECTTTTGGGTTCSEE------------------------EEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC-
T ss_pred             ccccchhhhhhhhcccccc------------------------cccccccccc--cccccchhhhhhhcccccccCcCc-
Confidence            100  00012222333333                        3333222111  123445678889998888765422 


Q ss_pred             ccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCccccc--CCccccCCCCCcEEECcCCc
Q 047929          463 WFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGI--IPVPFENCSQLVALDMGENE  540 (790)
Q Consensus       463 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~l~~n~  540 (790)
                                     ..++.|+.+.+.+|......  ....+++|+.+++++|.+...  .+..+..+.+|+.+++..+.
T Consensus       346 ---------------~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~  408 (635)
T 4g8a_A          346 ---------------LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG  408 (635)
T ss_dssp             ---------------CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred             ---------------ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence                           24577889999988876432  345688999999999987543  44556678899999999987


Q ss_pred             ccccCchhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecc
Q 047929          541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHA  619 (790)
Q Consensus       541 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~  619 (790)
                      .... +..+ ..+++|+.+++.++......+ ..+..+++++.+++++|.+.+..|..+..++.                
T Consensus       409 ~~~~-~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~----------------  470 (635)
T 4g8a_A          409 VITM-SSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS----------------  470 (635)
T ss_dssp             EEEE-CSCC-TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT----------------
T ss_pred             cccc-cccc-cccccccchhhhhccccccccccccccccccccccccccccccccccccccchh----------------
Confidence            7643 3333 368899999999887765433 45778899999999999988776665554443                


Q ss_pred             cccccceeeeeeeeeccchhhhhhcccceeEEEccCccCC-CCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCE
Q 047929          620 SFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFS-GEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIES  698 (790)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  698 (790)
                                                  ++.|++++|.+. +..|..+..+++|++|+|++|++++..|.+|.++++|++
T Consensus       471 ----------------------------L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~  522 (635)
T 4g8a_A          471 ----------------------------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  522 (635)
T ss_dssp             ----------------------------CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ----------------------------hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence                                        568999999854 457888999999999999999999999999999999999


Q ss_pred             EeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCc--CCccCCccccCCcc-cC
Q 047929          699 LDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQ--LQSFGASSITGNDL-CG  755 (790)
Q Consensus       699 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~--~~sl~~l~~~~n~l-~~  755 (790)
                      |+|++|++++..|..|..+++|+.|++++|++.+.+|....  +.+|+.+++.+|++ |.
T Consensus       523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            99999999988899999999999999999999998887743  47899999999955 54

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.4e-39  Score=368.29  Aligned_cols=359  Identities=20%  Similarity=0.299  Sum_probs=230.6

Q ss_pred             cccccccCcccccCCCCCCEEEccCCCCCCC-----------------cchhhhhhhcc--ccCCCCEEEccCCcccccc
Q 047929          279 NRLQGTISSIGLENLTFIKTLDLSFNELGQD-----------------ISEILDIISAC--AAFELESLFLRGCKISGQL  339 (790)
Q Consensus       279 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~  339 (790)
                      |.+++ +|.. +.++++|+.|++++|.+.+.                 ++.     .+.  .+++|+.|++++|.+.+.+
T Consensus       435 N~L~~-IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-----~l~f~~L~~L~~L~Ls~N~l~~~i  507 (876)
T 4ecn_A          435 NRITF-ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-----ELSWSNLKDLTDVELYNCPNMTQL  507 (876)
T ss_dssp             CEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-----CCCGGGCTTCCEEEEESCTTCCSC
T ss_pred             Ccccc-hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-----hhhhccCCCCCEEECcCCCCCccC
Confidence            45554 5544 56666666666666666551                 222     223  5666666666666666666


Q ss_pred             chhhccCCCCcEEEccCcc-cCC-CCCcCcC-------CCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCccee
Q 047929          340 TNQLGLFKNLHTLALSDNS-VSG-PLPPASG-------ELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNF  410 (790)
Q Consensus       340 ~~~l~~l~~L~~L~L~~~~-i~~-~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  410 (790)
                      |..+..+++|+.|++++|+ +++ .+|..++       .+++|+.|++++|.+...+....++.+++|+.+++++|.+. 
T Consensus       508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-  586 (876)
T 4ecn_A          508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-  586 (876)
T ss_dssp             CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred             hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-
Confidence            6666666677777777666 554 4554333       33467777777776663322123455555555544444433 


Q ss_pred             ecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCC-CcEEEcc
Q 047929          411 KINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPD-LRVLNLG  489 (790)
Q Consensus       411 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~  489 (790)
                                              .+| .+..+++|++|++++|.+..              +|..+..+++ |+.|+++
T Consensus       587 ------------------------~lp-~~~~L~~L~~L~Ls~N~l~~--------------lp~~l~~l~~~L~~L~Ls  627 (876)
T 4ecn_A          587 ------------------------HLE-AFGTNVKLTDLKLDYNQIEE--------------IPEDFCAFTDQVEGLGFS  627 (876)
T ss_dssp             ------------------------BCC-CCCTTSEESEEECCSSCCSC--------------CCTTSCEECTTCCEEECC
T ss_pred             ------------------------cch-hhcCCCcceEEECcCCcccc--------------chHHHhhccccCCEEECc
Confidence                                    222 34445555556665555432              2333445555 6666666


Q ss_pred             CCcccccCCcCCCCCC--CCCEEEccCCcccccCCccc---c--CCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcC
Q 047929          490 NNKFTGSIPISMGTLT--SLRSLNLRSNRLSGIIPVPF---E--NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLR  562 (790)
Q Consensus       490 ~n~~~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~l---~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  562 (790)
                      +|.++ .+|..+..++  +|+.|++++|++.+..|...   .  .+++|+.|++++|.+. .+|..++..+++|+.|+++
T Consensus       628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls  705 (876)
T 4ecn_A          628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILS  705 (876)
T ss_dssp             SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECC
T ss_pred             CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECC
Confidence            66666 4555555443  37777777777665443211   1  2347788888888877 6777776677888888888


Q ss_pred             CCcccccCCccccC--------CCCCcEEEccCCcccccCCcchh--ccccccccCCccccceeecccccccceeeeeee
Q 047929          563 SNKLHGIFPIQICH--------LSSLQILDVAYNRLSGSVPKCIN--NFTAMATIGSHHQVKAIYHASFENDYIVEEISL  632 (790)
Q Consensus       563 ~n~~~~~~~~~~~~--------l~~L~~L~ls~n~l~~~~p~~l~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  632 (790)
                      +|+++. +|..+..        +++|+.|++++|.++ .+|..+.  .++                              
T Consensus       706 ~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~------------------------------  753 (876)
T 4ecn_A          706 NNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP------------------------------  753 (876)
T ss_dssp             SCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT------------------------------
T ss_pred             CCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC------------------------------
Confidence            888873 3433322        238888888888887 5665543  333                              


Q ss_pred             eeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCC------CcCCcCCCccccCCCCCCEEeCcCccC
Q 047929          633 VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSH------NSFIGKIPETIGNMRSIESLDLSGNQI  706 (790)
Q Consensus       633 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~p~~l~~l~~L~~L~l~~n~l  706 (790)
                                    .|+.|+|++|.+.+ +|..+..+++|+.|+|++      |.+.+.+|.+|..+++|+.|++++|++
T Consensus       754 --------------~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          754 --------------YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             --------------TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             --------------CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence                          45688888888886 788888889999998876      778888999999999999999999999


Q ss_pred             ccccCccccCCCCCCEEECcCCcccccCCC
Q 047929          707 SGKIPQSMSSLSFLNHLNLSDNKLVGKIPS  736 (790)
Q Consensus       707 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  736 (790)
                       +.+|..+.  ++|+.|++++|++...-+.
T Consensus       819 -~~Ip~~l~--~~L~~LdLs~N~l~~i~~~  845 (876)
T 4ecn_A          819 -RKVDEKLT--PQLYILDIADNPNISIDVT  845 (876)
T ss_dssp             -CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred             -CccCHhhc--CCCCEEECCCCCCCccChH
Confidence             57888765  6899999999998754443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.5e-38  Score=356.20  Aligned_cols=463  Identities=19%  Similarity=0.233  Sum_probs=256.5

Q ss_pred             cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEEC
Q 047929           48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDL  127 (790)
Q Consensus        48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l  127 (790)
                      ..++++++++++++ +|..+.  ++|++|++++|.+.+. .++.|.++++|++|++++|.+++..|.++..+++|++|++
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            34788999998874 666554  7899999999998865 4578889999999999999998877888888888988888


Q ss_pred             cCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCC
Q 047929          128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNL  207 (790)
Q Consensus       128 s~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  207 (790)
                      ++|.+..                                                    ++..   .+++|++|++++|.
T Consensus       108 s~N~l~~----------------------------------------------------lp~~---~l~~L~~L~Ls~N~  132 (562)
T 3a79_B          108 SHNRLQN----------------------------------------------------ISCC---PMASLRHLDLSFND  132 (562)
T ss_dssp             TTSCCCE----------------------------------------------------ECSC---CCTTCSEEECCSSC
T ss_pred             CCCcCCc----------------------------------------------------cCcc---ccccCCEEECCCCC
Confidence            8875431                                                    1111   34455555555555


Q ss_pred             CCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCC--cEEeCCCCcC--CccccccccCCC--CCCEEEccCccc
Q 047929          208 FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSL--RYLDLSYNQF--NSTISDCFSNFD--DLEYLSLGYNRL  281 (790)
Q Consensus       208 l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~--~L~~L~l~~~~l  281 (790)
                      +....+|..+..+++|++|++++|.+.+.   .+..+++|  ++|++++|.+  .+..+..+..+.  .+ .+++++|.+
T Consensus       133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~  208 (562)
T 3a79_B          133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSL  208 (562)
T ss_dssp             CSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSC
T ss_pred             ccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccc
Confidence            54333445555555555555555555432   23333344  6666666655  444455444433  12 345556665


Q ss_pred             ccccCcccccCCCCCCEEEccCCCCCCC-cchhhhhhhccccCCCCEEEccCCcccccc----chhhccCCCCcEEEccC
Q 047929          282 QGTISSIGLENLTFIKTLDLSFNELGQD-ISEILDIISACAAFELESLFLRGCKISGQL----TNQLGLFKNLHTLALSD  356 (790)
Q Consensus       282 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~  356 (790)
                      .+.++...+..+++|+.+++++|..... .....  ..+...+.|+.+++.++.+.+..    +..+ ..++|++|++++
T Consensus       209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~  285 (562)
T 3a79_B          209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYN  285 (562)
T ss_dssp             CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEE
T ss_pred             hhhhhhhcccccceEEEecccccccccchHHHHH--HHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEec
Confidence            5555555566667777777776642100 00100  12344566666666666544321    1111 234788888888


Q ss_pred             cccCCCCCcCc-----CCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCC
Q 047929          357 NSVSGPLPPAS-----GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCH  431 (790)
Q Consensus       357 ~~i~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  431 (790)
                      |.+.+.+|..+     ..++.|+.+++..+.+  ..+...+.                                      
T Consensus       286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~--------------------------------------  325 (562)
T 3a79_B          286 LTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALY--------------------------------------  325 (562)
T ss_dssp             EEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHH--------------------------------------
T ss_pred             cEeeccccchhhhcccccchheehhhccccee--ecChhhhh--------------------------------------
Confidence            88776666654     2222222222222222  00000000                                      


Q ss_pred             CCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEE
Q 047929          432 LGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLN  511 (790)
Q Consensus       432 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  511 (790)
                             .+....+|++|++++|.+...                                     .  ....+++|++|+
T Consensus       326 -------~~~~~~~L~~L~l~~n~~~~~-------------------------------------~--~~~~l~~L~~L~  359 (562)
T 3a79_B          326 -------SVFAEMNIKMLSISDTPFIHM-------------------------------------V--CPPSPSSFTFLN  359 (562)
T ss_dssp             -------HHHHTCCCSEEEEESSCCCCC-------------------------------------C--CCSSCCCCCEEE
T ss_pred             -------hhhccCcceEEEccCCCcccc-------------------------------------c--CccCCCCceEEE
Confidence                   000113344455544443221                                     0  013345555555


Q ss_pred             ccCCcccccCCccccCCCCCcEEECcCCcccc--cCchhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCcEEEccCC
Q 047929          512 LRSNRLSGIIPVPFENCSQLVALDMGENEFVG--NIPTWMGERFSRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYN  588 (790)
Q Consensus       512 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n  588 (790)
                      +++|++++..+..+..+++|++|++++|.+.+  .+|..+ ..+++|++|++++|++++.+| ..+..+++|+.|++++|
T Consensus       360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n  438 (562)
T 3a79_B          360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN  438 (562)
T ss_dssp             CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT-TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred             CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh-cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence            55555555455555555555555555555542  112222 356777777777777766333 34667778888888887


Q ss_pred             cccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCccccc
Q 047929          589 RLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTN  668 (790)
Q Consensus       589 ~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  668 (790)
                      .+++..|..+                                                                    . 
T Consensus       439 ~l~~~~~~~l--------------------------------------------------------------------~-  449 (562)
T 3a79_B          439 MLTGSVFRCL--------------------------------------------------------------------P-  449 (562)
T ss_dssp             CCCGGGGSSC--------------------------------------------------------------------C-
T ss_pred             CCCcchhhhh--------------------------------------------------------------------c-
Confidence            7764333211                                                                    1 


Q ss_pred             CCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCcc-ccCCCCCCEEECcCCcccccCC
Q 047929          669 LKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQS-MSSLSFLNHLNLSDNKLVGKIP  735 (790)
Q Consensus       669 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~p  735 (790)
                       ++|++|++++|.++ .+|..+..+++|++|++++|+++. +|.. +..+++|+.|++++|++.+..|
T Consensus       450 -~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          450 -PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             -TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             -CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence             34555555555554 444444456666666666666663 3333 6666666666666666665444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.1e-37  Score=347.36  Aligned_cols=456  Identities=22%  Similarity=0.213  Sum_probs=270.2

Q ss_pred             CEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccC
Q 047929          199 NALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY  278 (790)
Q Consensus       199 ~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  278 (790)
                      ++++++++.++  .+|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus        34 ~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            44444444442  2343332  4444555555544444444445555555555555554444444444455555555555


Q ss_pred             cccccccCcccccCCCCCCEEEccCCCCCCCc-chhhhhhhccccCCCCEEEccCCccccccchhhccCCCC--cEEEcc
Q 047929          279 NRLQGTISSIGLENLTFIKTLDLSFNELGQDI-SEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNL--HTLALS  355 (790)
Q Consensus       279 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~L~  355 (790)
                      |.++ .++..   .+++|++|++++|.+.... +.     .+..+++|++|++++|.+...   .+..+++|  ++|+++
T Consensus       110 N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~-----~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          110 NRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCK-----EFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD  177 (562)
T ss_dssp             SCCC-EECSC---CCTTCSEEECCSSCCSBCCCCG-----GGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred             CcCC-ccCcc---ccccCCEEECCCCCccccCchH-----hhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence            5444 33322   3444555555555444322 12     233444455555555544431   22333333  666666


Q ss_pred             Cccc--CCCCCcCcCCCC--CCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCC
Q 047929          356 DNSV--SGPLPPASGELS--SLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCH  431 (790)
Q Consensus       356 ~~~i--~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  431 (790)
                      +|.+  .+..|..+..+.  .+ .+++++|.+.+......+..+++|+.+++..|....                    .
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--------------------~  236 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC--------------------Q  236 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH--------------------H
T ss_pred             cccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEeccccccccc--------------------c
Confidence            6655  444444444332  11 334455554444433334444444444444332000                    0


Q ss_pred             CCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCC-----CCCCC
Q 047929          432 LGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-----GTLTS  506 (790)
Q Consensus       432 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~  506 (790)
                      ........+..++.|+.++++++.+.+.....         ++. ....++|++|++++|.+++.+|..+     ..++.
T Consensus       237 ~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~---------~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~  306 (562)
T 3a79_B          237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVK---------LFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKS  306 (562)
T ss_dssp             HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHH---------HHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred             hHHHHHHHHhccCcceEEEecCCcCcHHHHHH---------HHH-hhhcccccEEEEeccEeeccccchhhhcccccchh
Confidence            00001122455566777777666554321110         001 1123478888888888887777665     55555


Q ss_pred             CCEEEccCCcccccCC-cccc---CCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcE
Q 047929          507 LRSLNLRSNRLSGIIP-VPFE---NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQI  582 (790)
Q Consensus       507 L~~L~L~~n~i~~~~~-~~l~---~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  582 (790)
                      |+.+++..+.+  ..| ..+.   ...+|+.|++++|.+....   +...+++|++|++++|++++..|..+..+++|+.
T Consensus       307 L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  381 (562)
T 3a79_B          307 LMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT  381 (562)
T ss_dssp             EEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCE
T ss_pred             eehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCE
Confidence            55555555555  122 1121   1257899999998875322   1136789999999999999888888999999999


Q ss_pred             EEccCCccccc--CCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC
Q 047929          583 LDVAYNRLSGS--VPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG  660 (790)
Q Consensus       583 L~ls~n~l~~~--~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  660 (790)
                      |++++|.+++.  +|..+.++                                            +.|+.|++++|.+.+
T Consensus       382 L~L~~N~l~~~~~~~~~~~~l--------------------------------------------~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          382 LILQRNGLKNFFKVALMTKNM--------------------------------------------SSLETLDVSLNSLNS  417 (562)
T ss_dssp             EECCSSCCCBTTHHHHTTTTC--------------------------------------------TTCCEEECTTSCCBS
T ss_pred             EECCCCCcCCcccchhhhcCC--------------------------------------------CCCCEEECCCCcCCC
Confidence            99999998752  22333333                                            345789999999997


Q ss_pred             CCCc-ccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCC--C
Q 047929          661 EIPM-EVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPS--S  737 (790)
Q Consensus       661 ~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~--~  737 (790)
                      .+|. .+..+++|++|++++|.+++..|..+.  ++|+.|++++|++. .+|..+..+++|++|++++|++.+ +|.  .
T Consensus       418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~  493 (562)
T 3a79_B          418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVF  493 (562)
T ss_dssp             CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTST
T ss_pred             ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHH
Confidence            5665 578899999999999999887776655  79999999999999 677777799999999999999995 655  3


Q ss_pred             CcCCccCCccccCCccc
Q 047929          738 TQLQSFGASSITGNDLC  754 (790)
Q Consensus       738 ~~~~sl~~l~~~~n~l~  754 (790)
                      ..+.+|+.+++.+|++.
T Consensus       494 ~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          494 DRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             TTCTTCCCEECCSCCBC
T ss_pred             hcCCCCCEEEecCCCcC
Confidence            56889999999999653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.2e-36  Score=314.54  Aligned_cols=293  Identities=30%  Similarity=0.496  Sum_probs=218.3

Q ss_pred             CChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcc--cCceeecCCC--CcEEEEEcCCCCCCc--cccccCcCCCCCCE
Q 047929            2 GCLESERVALIKLKQDFKDPSNHLASWIGDVDCCE--WGGVVCNNIT--GHVLELNLERSELGG--KINPALVDLKHLNL   75 (790)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~c~~~~--~~v~~L~L~~~~~~~--~~~~~l~~l~~L~~   75 (790)
                      +|+.+|+.||++||+++.||. .+++|..+++||.  |.||.|....  ++|++|+|+++.+.+  .+|+++.++++|++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~   80 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence            699999999999999998887 7899977689998  9999997544  899999999999998  88999999999999


Q ss_pred             EeCCC-CCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECC
Q 047929           76 LDLSG-NDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTS  154 (790)
Q Consensus        76 L~Ls~-~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~  154 (790)
                      |++++ |.+.+. +|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+.                     
T Consensus        81 L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~---------------------  138 (313)
T 1ogq_A           81 LYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---------------------  138 (313)
T ss_dssp             EEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE---------------------
T ss_pred             eeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC---------------------
Confidence            99995 888765 8889999999999999999998878888888888888888876432                     


Q ss_pred             CCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCC-CCcEEEccCCcC
Q 047929          155 DVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLS-DLVFLDLSSNIF  233 (790)
Q Consensus       155 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~-~L~~L~l~~~~~  233 (790)
                                                     ...+..+..+++|++|++++|.+.+ .+|..+..++ +|++|++++|.+
T Consensus       139 -------------------------------~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          139 -------------------------------GTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             -------------------------------SCCCGGGGGCTTCCEEECCSSCCEE-ECCGGGGCCCTTCCEEECCSSEE
T ss_pred             -------------------------------CcCChHHhcCCCCCeEECcCCcccC-cCCHHHhhhhhcCcEEECcCCee
Confidence                                           2233445556666666666666643 4666666666 777777777777


Q ss_pred             CCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchh
Q 047929          234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEI  313 (790)
Q Consensus       234 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  313 (790)
                      .+.+|..+..++ |++|++++|.+.+..+..+..+++|+.|++++|.+.+.++.  +..+                    
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l--------------------  243 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLS--------------------  243 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCC--------------------
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--cccc--------------------
Confidence            766777676665 77777777777666666666666666666666665533332  2333                    


Q ss_pred             hhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCc
Q 047929          314 LDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNN  382 (790)
Q Consensus       314 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~  382 (790)
                               ++|++|++++|.+++..|..+..+++|++|++++|++++.+|.. +.+++|+.+++++|+
T Consensus       244 ---------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          244 ---------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             ---------TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             ---------CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence                     44555555555555556666666777777777777776666654 566667777776665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.1e-35  Score=324.18  Aligned_cols=397  Identities=19%  Similarity=0.224  Sum_probs=243.1

Q ss_pred             EEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCcc-ccccccCCCCCCEEEccC
Q 047929          200 ALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNST-ISDCFSNFDDLEYLSLGY  278 (790)
Q Consensus       200 ~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~  278 (790)
                      .++.+++.+  ..+|. +  .++|++|++++|.+.+..|..|.++++|++|++++|.+.+. .+..|..+++|++|++++
T Consensus        14 ~~~c~~~~l--~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGL--HQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCC--SSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCc--ccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            455555555  33555 2  25677777777777666666677777777777777766533 345566666666666666


Q ss_pred             cccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcc
Q 047929          279 NRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNS  358 (790)
Q Consensus       279 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  358 (790)
                      |.+.+..+.. +..+++|++|++++|.+.+..+.                           ...+..+++|++|++++|.
T Consensus        89 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~---------------------------~~~~~~l~~L~~L~L~~n~  140 (455)
T 3v47_A           89 NQFLQLETGA-FNGLANLEVLTLTQCNLDGAVLS---------------------------GNFFKPLTSLEMLVLRDNN  140 (455)
T ss_dssp             CTTCEECTTT-TTTCTTCCEEECTTSCCBTHHHH---------------------------SSTTTTCTTCCEEECCSSB
T ss_pred             CccCccChhh-ccCcccCCEEeCCCCCCCccccC---------------------------cccccCcccCCEEECCCCc
Confidence            6665433333 55555555555555554331111                           1114455555555555555


Q ss_pred             cCCCCCcC-cCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCC
Q 047929          359 VSGPLPPA-SGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFP  437 (790)
Q Consensus       359 i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  437 (790)
                      +.+..|.. +..+++|++|++++|.+.+..+. .+..+                                          
T Consensus       141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l------------------------------------------  177 (455)
T 3v47_A          141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNF------------------------------------------  177 (455)
T ss_dssp             CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGG------------------------------------------
T ss_pred             cCccCcccccCCCCcccEEeCCCCcccccChh-hhhcc------------------------------------------
Confidence            55444443 45555555555555555433221 11110                                          


Q ss_pred             cccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCC---CCCCCEEEccC
Q 047929          438 SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT---LTSLRSLNLRS  514 (790)
Q Consensus       438 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~L~L~~  514 (790)
                          ...+++.|++++|.+.+..+.++..     .....+..+++|++|++++|.+++..+..+..   .++|+.|++++
T Consensus       178 ----~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          178 ----QGKHFTLLRLSSITLQDMNEYWLGW-----EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             ----TTCEEEEEECTTCBCTTCSTTCTTH-----HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             ----ccccccccccccCcccccchhhccc-----cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence                0022333444444433322211100     00011223455666666666655444433322   25666666666


Q ss_pred             CcccccCCccccCCCCCcEEECcCCcccccCchhhh-hcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCccccc
Q 047929          515 NRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMG-ERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGS  593 (790)
Q Consensus       515 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~  593 (790)
                      |...+.... .             +.+.+..+..+. -..++|++|++++|++.+..+..+..+++|++|++++|.+.+.
T Consensus       249 ~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          249 SYNMGSSFG-H-------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             CTTTSCCTT-C-------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             ccccccccc-h-------------hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence            654432110 0             011100011110 1246788888888888888888888888888899888888877


Q ss_pred             CCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCC
Q 047929          594 VPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQ  673 (790)
Q Consensus       594 ~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  673 (790)
                      .|..+.++++                                            |++|++++|.+.+..|..+..+++|+
T Consensus       315 ~~~~~~~l~~--------------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          315 DDNAFWGLTH--------------------------------------------LLKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             CTTTTTTCTT--------------------------------------------CCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             ChhHhcCccc--------------------------------------------CCEEECCCCccCCcChhHhcCcccCC
Confidence            6766655544                                            45888999988877788889999999


Q ss_pred             EEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCc
Q 047929          674 SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQ  739 (790)
Q Consensus       674 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~  739 (790)
                      +|++++|.+++..|.+|..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|....
T Consensus       351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  416 (455)
T 3v47_A          351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  416 (455)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence            999999999988899999999999999999999987777889999999999999999999986543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.2e-35  Score=319.01  Aligned_cols=429  Identities=21%  Similarity=0.253  Sum_probs=225.4

Q ss_pred             ccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCC
Q 047929           65 PALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAG  144 (790)
Q Consensus        65 ~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~  144 (790)
                      +.-.+.++|++|++++|.+.  .+|+.++++++|++|++++|.+.+.+|.+++++++|+++++++|..            
T Consensus         5 p~~~~~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------   70 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------   70 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred             ccccccccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence            33445789999999999984  5899999999999999999999988999999999887666665531            


Q ss_pred             CCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCc
Q 047929          145 PSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLV  224 (790)
Q Consensus       145 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~  224 (790)
                       .++++|+++++.+.+.+.      -.++|++|++++|.+..++.    ..++|++|++++|.+.+  +|..   .++|+
T Consensus        71 -~~l~~L~l~~~~l~~lp~------~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~--l~~~---~~~L~  134 (454)
T 1jl5_A           71 -RQAHELELNNLGLSSLPE------LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKA--LSDL---PPLLE  134 (454)
T ss_dssp             -HTCSEEECTTSCCSCCCS------CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC--CCSC---CTTCC
T ss_pred             -cCCCEEEecCCccccCCC------CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCc--ccCC---CCCCC
Confidence             456677777776665443      13678888888888777543    23788888888887743  4432   26888


Q ss_pred             EEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCC
Q 047929          225 FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN  304 (790)
Q Consensus       225 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~  304 (790)
                      +|++++|.+.+ +| .++++++|++|++++|++.+ +|..   ..+|++|++++|.+.+ ++.  +..+++|+.|++++|
T Consensus       135 ~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~~--~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          135 YLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPE--LQNLPFLTAIYADNN  205 (454)
T ss_dssp             EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSS
T ss_pred             EEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Ccc--ccCCCCCCEEECCCC
Confidence            88888888875 66 48888888888888888875 3432   3578888888888874 552  778888888888888


Q ss_pred             CCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCC
Q 047929          305 ELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN  384 (790)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~  384 (790)
                      .+.+.+.         ..++|++|++++|.+. .+| .+..+++|++|++++|++.+ +|.   .+++|+.|++++|.+.
T Consensus       206 ~l~~l~~---------~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          206 SLKKLPD---------LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLT  270 (454)
T ss_dssp             CCSSCCC---------CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCS
T ss_pred             cCCcCCC---------CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccc
Confidence            8765322         1247888888888877 455 37778888888888888874 443   2477888888888877


Q ss_pred             CcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccC-CCCCEEEccCCccCCCcccc
Q 047929          385 GMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQ-KHLSKLDISNTRISDIIPRW  463 (790)
Q Consensus       385 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~  463 (790)
                      +...     ..++|+.+++++|.+.....    .+++|+.|++++|.+.+.     ..+ ++|++|++++|.+.++    
T Consensus       271 ~l~~-----~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~l----  332 (454)
T 1jl5_A          271 DLPE-----LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIEL----  332 (454)
T ss_dssp             CCCC-----CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCC----
T ss_pred             ccCc-----ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccc----
Confidence            5332     13566666666665544211    124555566655554431     111 3556666666555432    


Q ss_pred             cccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccc--cCCccccCCCCCcEEECcCCcc
Q 047929          464 FWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG--IIPVPFENCSQLVALDMGENEF  541 (790)
Q Consensus       464 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~~  541 (790)
                                |.   .+++|+.|++++|.++ .+|.   .+++|++|++++|++++  ..|..+      ..|  +.|..
T Consensus       333 ----------p~---~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l------~~L--~~n~~  387 (454)
T 1jl5_A          333 ----------PA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESV------EDL--RMNSH  387 (454)
T ss_dssp             ----------CC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTC------CEE--ECCC-
T ss_pred             ----------cc---cCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHH------Hhh--hhccc
Confidence                      11   1245566666666555 2333   24556666666665554  222222      222  22333


Q ss_pred             cccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcch
Q 047929          542 VGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI  598 (790)
Q Consensus       542 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l  598 (790)
                      .+.+|.    .+++|++|++++|++++. +. +  .++++.|.+.+|.+.+.+|...
T Consensus       388 ~~~i~~----~~~~L~~L~ls~N~l~~~-~~-i--P~sl~~L~~~~~~~~~~~~~~~  436 (454)
T 1jl5_A          388 LAEVPE----LPQNLKQLHVETNPLREF-PD-I--PESVEDLRMNSERVVDPYEFAH  436 (454)
T ss_dssp             ---------------------------------------------------------
T ss_pred             cccccc----ccCcCCEEECCCCcCCcc-cc-c--hhhHhheeCcCcccCCccccCH
Confidence            334443    235677777777776642 10 1  2346666666666665554433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.7e-34  Score=315.41  Aligned_cols=368  Identities=22%  Similarity=0.197  Sum_probs=248.2

Q ss_pred             CCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEe
Q 047929          172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD  251 (790)
Q Consensus       172 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  251 (790)
                      ++|++|++++|.+..+.+..+.++++|++|++++|.+.....+..+..+++|++|++++|.+.+..|..|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            56777777777777777777777777777777777764322245566777777777777777766677777777777777


Q ss_pred             CCCCcCCcccccc--ccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEE
Q 047929          252 LSYNQFNSTISDC--FSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLF  329 (790)
Q Consensus       252 l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~  329 (790)
                      +++|.+.+..+..  +..+++|++|++++|.+.+..+...+..+++|++|++++|.+....+..+.   .....+++.++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~~~L~~L~  186 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL---NFQGKHFTLLR  186 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG---GGTTCEEEEEE
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh---ccccccccccc
Confidence            7777776544333  677777777777777776554544356677777777777766555443211   01113555666


Q ss_pred             ccCCccccccchhh--------ccCCCCcEEEccCcccCCCCCcCcCC---CCCCCEEECcCCcCCCcCChhhhcccccc
Q 047929          330 LRGCKISGQLTNQL--------GLFKNLHTLALSDNSVSGPLPPASGE---LSSLTYLDLSNNNLNGMISEIHFGNLTEL  398 (790)
Q Consensus       330 l~~~~~~~~~~~~l--------~~l~~L~~L~L~~~~i~~~~~~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  398 (790)
                      +++|.+.+..+..+        ..+++|++|++++|.+.+..|..+..   .++|+.|++++|...+...          
T Consensus       187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----------  256 (455)
T 3v47_A          187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF----------  256 (455)
T ss_dssp             CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT----------
T ss_pred             cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc----------
Confidence            66665554332221        12344555555555544433333221   1445555555444322110          


Q ss_pred             ceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccc--cCCCCCEEEccCCccCCCcccccccccccccCCCc
Q 047929          399 AFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLH--SQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDC  476 (790)
Q Consensus       399 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~  476 (790)
                                                   ....+....+..+.  ..++|++|++++|.+.+.             .+..
T Consensus       257 -----------------------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-------------~~~~  294 (455)
T 3v47_A          257 -----------------------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-------------LKSV  294 (455)
T ss_dssp             -----------------------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE-------------CTTT
T ss_pred             -----------------------------chhhhccCcccccccccccCceEEEecCcccccc-------------chhh
Confidence                                         00001111111122  236788999999887653             3455


Q ss_pred             cCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCC
Q 047929          477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRL  556 (790)
Q Consensus       477 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  556 (790)
                      +..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+. .+++|
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L  373 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNL  373 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccc
Confidence            67788999999999999988888889999999999999999888888899999999999999999876676664 78999


Q ss_pred             cEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 047929          557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP  595 (790)
Q Consensus       557 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p  595 (790)
                      ++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999998777778899999999999999997776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.9e-34  Score=312.85  Aligned_cols=405  Identities=20%  Similarity=0.227  Sum_probs=173.9

Q ss_pred             CCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCE
Q 047929          194 NFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEY  273 (790)
Q Consensus       194 ~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  273 (790)
                      +.++|++|++++|.+  ..+|..++++++|++|++++|.+.+.+|..++++++|+.+++.+|..           .++++
T Consensus         9 ~~~~L~~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~   75 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHE   75 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSE
T ss_pred             ccccchhhhcccCch--hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCE
Confidence            357888899988888  36888888889999999998888888888888887763333322210           22344


Q ss_pred             EEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEE
Q 047929          274 LSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLA  353 (790)
Q Consensus       274 L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  353 (790)
                      |++++|.+++ +|..    .++|++|++++|.+.+.+.         .+++|++|++++|.+.+. +.   ..++|++|+
T Consensus        76 L~l~~~~l~~-lp~~----~~~L~~L~l~~n~l~~lp~---------~~~~L~~L~l~~n~l~~l-~~---~~~~L~~L~  137 (454)
T 1jl5_A           76 LELNNLGLSS-LPEL----PPHLESLVASCNSLTELPE---------LPQSLKSLLVDNNNLKAL-SD---LPPLLEYLG  137 (454)
T ss_dssp             EECTTSCCSC-CCSC----CTTCSEEECCSSCCSSCCC---------CCTTCCEEECCSSCCSCC-CS---CCTTCCEEE
T ss_pred             EEecCCcccc-CCCC----cCCCCEEEccCCcCCcccc---------ccCCCcEEECCCCccCcc-cC---CCCCCCEEE
Confidence            4444444331 2111    1344444444444433111         113444444444444421 11   013555555


Q ss_pred             ccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCC
Q 047929          354 LSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLG  433 (790)
Q Consensus       354 L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  433 (790)
                      +++|.+.+ +| .++.+++|++|++++|.+++....     ..                        +|+.|++++|.+.
T Consensus       138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~-----~~------------------------~L~~L~L~~n~l~  186 (454)
T 1jl5_A          138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDL-----PP------------------------SLEFIAAGNNQLE  186 (454)
T ss_dssp             CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCC-----CT------------------------TCCEEECCSSCCS
T ss_pred             CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCC-----cc------------------------cccEEECcCCcCC
Confidence            55555553 34 355555555555555554432110     11                        3334444444333


Q ss_pred             CCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEcc
Q 047929          434 PHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLR  513 (790)
Q Consensus       434 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  513 (790)
                      + +| .+..+++|++|++++|.+.+++              .   ..++|++|++++|.+. .+| .+..+++|++|+++
T Consensus       187 ~-l~-~~~~l~~L~~L~l~~N~l~~l~--------------~---~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~  245 (454)
T 1jl5_A          187 E-LP-ELQNLPFLTAIYADNNSLKKLP--------------D---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYAD  245 (454)
T ss_dssp             S-CC-CCTTCTTCCEEECCSSCCSSCC--------------C---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred             c-Cc-cccCCCCCCEEECCCCcCCcCC--------------C---CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECC
Confidence            3 22 2455555666666655554321              1   1135666666666655 344 25556666666666


Q ss_pred             CCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCccccc
Q 047929          514 SNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGS  593 (790)
Q Consensus       514 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~  593 (790)
                      +|++++.. .   .+++|+.|++++|.+.+ +|.    .+++|++|++++|++++.. .   ..++|+.|++++|.+.+ 
T Consensus       246 ~N~l~~l~-~---~~~~L~~L~l~~N~l~~-l~~----~~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~-  311 (454)
T 1jl5_A          246 NNLLKTLP-D---LPPSLEALNVRDNYLTD-LPE----LPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRS-  311 (454)
T ss_dssp             SSCCSSCC-S---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSE-
T ss_pred             CCcCCccc-c---cccccCEEECCCCcccc-cCc----ccCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCc-
Confidence            66655422 1   12556666666666552 333    2355666666666665421 1   12456666666665542 


Q ss_pred             CCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCC
Q 047929          594 VPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQ  673 (790)
Q Consensus       594 ~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  673 (790)
                      ++.    +                                           ++.|++|++++|++.+ +|..   +++|+
T Consensus       312 i~~----~-------------------------------------------~~~L~~L~Ls~N~l~~-lp~~---~~~L~  340 (454)
T 1jl5_A          312 LCD----L-------------------------------------------PPSLEELNVSNNKLIE-LPAL---PPRLE  340 (454)
T ss_dssp             ECC----C-------------------------------------------CTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred             ccC----C-------------------------------------------cCcCCEEECCCCcccc-cccc---CCcCC
Confidence            110    0                                           1134556666666653 4432   35666


Q ss_pred             EEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcc--ccCccccCC-------------CCCCEEECcCCcccc--cCCC
Q 047929          674 SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISG--KIPQSMSSL-------------SFLNHLNLSDNKLVG--KIPS  736 (790)
Q Consensus       674 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~l~~l-------------~~L~~L~l~~n~l~~--~~p~  736 (790)
                      +|++++|.++ .+|.   .+++|++|++++|++.+  .+|.++..+             ++|+.|++++|++.+  .+| 
T Consensus       341 ~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP-  415 (454)
T 1jl5_A          341 RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP-  415 (454)
T ss_dssp             EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred             EEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch-
Confidence            6666666665 3444   34566666666666665  455555555             789999999999987  554 


Q ss_pred             CCcCCccCCccccCCcccC
Q 047929          737 STQLQSFGASSITGNDLCG  755 (790)
Q Consensus       737 ~~~~~sl~~l~~~~n~l~~  755 (790)
                          .+++.+.+.+|.+.+
T Consensus       416 ----~sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          416 ----ESVEDLRMNSERVVD  430 (454)
T ss_dssp             -------------------
T ss_pred             ----hhHhheeCcCcccCC
Confidence                467788888875443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.1e-32  Score=292.11  Aligned_cols=214  Identities=20%  Similarity=0.152  Sum_probs=121.2

Q ss_pred             ccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCcccc
Q 047929           63 INPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWL  142 (790)
Q Consensus        63 ~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l  142 (790)
                      .+..++++++|++|++++|.+.+  +| .+..+++|++|++++|.+++ +|  ++.+++|++|++++|.+...     .+
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-----~~  102 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-----DV  102 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-----CC
T ss_pred             cccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-----ec
Confidence            33456667777777777777763  34 46677777777777777766 33  67777777777777764432     14


Q ss_pred             CCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCC
Q 047929          143 AGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSD  222 (790)
Q Consensus       143 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~  222 (790)
                      +++++|++|++++|.+...     .+..+++|++|++++|.+..+   .++.+++|++|++++|...+ .+  .+..+++
T Consensus       103 ~~l~~L~~L~L~~N~l~~l-----~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~-~~--~~~~l~~  171 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKL-----DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKIT-KL--DVTPQTQ  171 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC-----CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCC-CC--CCTTCTT
T ss_pred             CCCCcCCEEECCCCcCCee-----cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccc-cc--ccccCCc
Confidence            4555555555555554443     144555566666666555554   24555566666666653322 12  2445555


Q ss_pred             CcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEcc
Q 047929          223 LVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLS  302 (790)
Q Consensus       223 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~  302 (790)
                      |++|++++|.+.+ +|  +..+++|++|++++|.+.+.   .+..+++|+.|++++|++.+ +|   +..+++|+.|+++
T Consensus       172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~  241 (457)
T 3bz5_A          172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCS  241 (457)
T ss_dssp             CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECC
T ss_pred             CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEee
Confidence            6666666665554 33  55555566666665555543   24555555555555555553 22   3445555555555


Q ss_pred             CCCCCC
Q 047929          303 FNELGQ  308 (790)
Q Consensus       303 ~~~~~~  308 (790)
                      +|.+.+
T Consensus       242 ~N~l~~  247 (457)
T 3bz5_A          242 VNPLTE  247 (457)
T ss_dssp             SSCCSC
T ss_pred             CCcCCC
Confidence            555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.6e-31  Score=293.21  Aligned_cols=347  Identities=26%  Similarity=0.386  Sum_probs=256.2

Q ss_pred             CCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccC
Q 047929          267 NFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF  346 (790)
Q Consensus       267 ~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  346 (790)
                      .+++++.|++.++.+. .++.  +..+++|++|++++|.+....+       +..+++|++|++++|.+.+..+  +..+
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~~--~~~l  111 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITP--LANL  111 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred             HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-------hhccccCCEEECCCCccccChh--hcCC
Confidence            3567788888888776 3443  6677888888888887765432       3456677777777777765443  6777


Q ss_pred             CCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEE
Q 047929          347 KNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALR  426 (790)
Q Consensus       347 ~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~  426 (790)
                      ++|++|++++|.+.+.. . +..+++|++|++++|.+.+..   .+..+++|+.+++.+                     
T Consensus       112 ~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~---------------------  165 (466)
T 1o6v_A          112 TNLTGLTLFNNQITDID-P-LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFGN---------------------  165 (466)
T ss_dssp             TTCCEEECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEEE---------------------
T ss_pred             CCCCEEECCCCCCCCCh-H-HcCCCCCCEEECCCCccCCCh---hhccCCcccEeecCC---------------------
Confidence            77777777777776442 2 677777777777777765432   245555555555431                     


Q ss_pred             cCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCC
Q 047929          427 LRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTS  506 (790)
Q Consensus       427 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  506 (790)
                          .+...  ..+..+++|++|++++|.+.++               ..+..+++|+.|++++|.+.+..+  +..+++
T Consensus       166 ----~~~~~--~~~~~l~~L~~L~l~~n~l~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~  222 (466)
T 1o6v_A          166 ----QVTDL--KPLANLTTLERLDISSNKVSDI---------------SVLAKLTNLESLIATNNQISDITP--LGILTN  222 (466)
T ss_dssp             ----SCCCC--GGGTTCTTCCEEECCSSCCCCC---------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTT
T ss_pred             ----cccCc--hhhccCCCCCEEECcCCcCCCC---------------hhhccCCCCCEEEecCCccccccc--ccccCC
Confidence                12111  1266778888888888887653               124567888889998888876544  667888


Q ss_pred             CCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEcc
Q 047929          507 LRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVA  586 (790)
Q Consensus       507 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls  586 (790)
                      |+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+   ...+++|++|++++|++++..+  +..+++|+.|+++
T Consensus       223 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~  295 (466)
T 1o6v_A          223 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN  295 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             CCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence            99999999988764  467788899999999998875443   3478899999999999886544  7788999999999


Q ss_pred             CCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCccc
Q 047929          587 YNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV  666 (790)
Q Consensus       587 ~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  666 (790)
                      +|.+.+..|  +..                                            ++.|+.|++++|.+.+..|  +
T Consensus       296 ~n~l~~~~~--~~~--------------------------------------------l~~L~~L~L~~n~l~~~~~--~  327 (466)
T 1o6v_A          296 ENQLEDISP--ISN--------------------------------------------LKNLTYLTLYFNNISDISP--V  327 (466)
T ss_dssp             SSCCSCCGG--GGG--------------------------------------------CTTCSEEECCSSCCSCCGG--G
T ss_pred             CCcccCchh--hcC--------------------------------------------CCCCCEEECcCCcCCCchh--h
Confidence            998875333  222                                            3446789999999986555  7


Q ss_pred             ccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCccccc
Q 047929          667 TNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGK  733 (790)
Q Consensus       667 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  733 (790)
                      ..+++|++|++++|.+++.  ..+..+++|+.|++++|++.+..|  +..+++|+.|++++|++.+.
T Consensus       328 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          328 SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            8899999999999999865  468899999999999999998776  88999999999999999873

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-31  Score=294.70  Aligned_cols=323  Identities=19%  Similarity=0.199  Sum_probs=203.1

Q ss_pred             CEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCC
Q 047929          326 ESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG  405 (790)
Q Consensus       326 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~  405 (790)
                      +.++.+++.++. +|..+  .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+. .|.++++|+.+++  
T Consensus        14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L--   87 (477)
T 2id5_A           14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGL--   87 (477)
T ss_dssp             TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEC--
T ss_pred             CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEEC--
Confidence            456666666653 44333  25677777777777766666777777777777777776654332 3444444444444  


Q ss_pred             CcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcE
Q 047929          406 NSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRV  485 (790)
Q Consensus       406 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  485 (790)
                                            ++|.+....+..|..+++|++|++++|.+..+             .+..+..+++|+.
T Consensus        88 ----------------------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-------------~~~~~~~l~~L~~  132 (477)
T 2id5_A           88 ----------------------RSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-------------LDYMFQDLYNLKS  132 (477)
T ss_dssp             ----------------------CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-------------CTTTTTTCTTCCE
T ss_pred             ----------------------CCCcCCccCcccccCCCCCCEEECCCCccccC-------------ChhHccccccCCE
Confidence                                  44444444444455566666666666665433             2233455566666


Q ss_pred             EEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCc
Q 047929          486 LNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNK  565 (790)
Q Consensus       486 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~  565 (790)
                      |++++|.+.+..+..|..+++|+.|++++|+++...+..+..+++|+.|++++|.+.+..+.. +..+++|++|++++|+
T Consensus       133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWP  211 (477)
T ss_dssp             EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC-SCSCTTCCEEEEECCT
T ss_pred             EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh-cccCcccceeeCCCCc
Confidence            666666666555556666666666666666666555555666666666666666665433322 2356666666666666


Q ss_pred             ccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcc
Q 047929          566 LHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSIL  645 (790)
Q Consensus       566 ~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  645 (790)
                      ..+..+.......+|+.|++++|.+++..+..+..+                                            
T Consensus       212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--------------------------------------------  247 (477)
T 2id5_A          212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL--------------------------------------------  247 (477)
T ss_dssp             TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC--------------------------------------------
T ss_pred             cccccCcccccCccccEEECcCCcccccCHHHhcCc--------------------------------------------
Confidence            555555544445567777777776653222233333                                            


Q ss_pred             cceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEEC
Q 047929          646 NLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNL  725 (790)
Q Consensus       646 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l  725 (790)
                      +.|+.|+|++|.+.+..+..+..+++|++|++++|.+++..|.+|..+++|+.|++++|+++...+..|..+++|++|++
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  327 (477)
T 2id5_A          248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL  327 (477)
T ss_dssp             TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred             cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence            33457777777777666666777788888888888887777777888888888888888887666667777788888888


Q ss_pred             cCCcccccC
Q 047929          726 SDNKLVGKI  734 (790)
Q Consensus       726 ~~n~l~~~~  734 (790)
                      ++|++....
T Consensus       328 ~~N~l~c~c  336 (477)
T 2id5_A          328 DSNPLACDC  336 (477)
T ss_dssp             CSSCEECSG
T ss_pred             cCCCccCcc
Confidence            888776543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-30  Score=286.37  Aligned_cols=345  Identities=24%  Similarity=0.331  Sum_probs=197.0

Q ss_pred             CCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEE
Q 047929          171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYL  250 (790)
Q Consensus       171 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  250 (790)
                      +++++.|++.++.+..++  .+..+++|++|++++|.+.+  +|. +..+++|++|++++|.+.+..+  +.++++|++|
T Consensus        45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            345666666666655543  25556666666666666633  343 5666666666666666664332  6666666666


Q ss_pred             eCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEc
Q 047929          251 DLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFL  330 (790)
Q Consensus       251 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  330 (790)
                      ++++|.+.+..+  +..+++|++|++++|.+.+ ++.  +..+++|+.|++.+ .+....       .+..+++|++|++
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~-~~~~~~-------~~~~l~~L~~L~l  184 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFGN-QVTDLK-------PLANLTTLERLDI  184 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEEE-SCCCCG-------GGTTCTTCCEEEC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecCC-cccCch-------hhccCCCCCEEEC
Confidence            666666655432  6666666666666666553 222  55666666666643 222111       2345556666666


Q ss_pred             cCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCccee
Q 047929          331 RGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNF  410 (790)
Q Consensus       331 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  410 (790)
                      ++|.+...  ..+..+++|++|++++|.+.+..+  ++.+++|+.|++++|.+.+..   .+..+++|+.+++++|    
T Consensus       185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n----  253 (466)
T 1o6v_A          185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANN----  253 (466)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSS----
T ss_pred             cCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch---hhhcCCCCCEEECCCC----
Confidence            66665532  235566667777777666664433  555666777777666655431   2344444444444443    


Q ss_pred             ecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccC
Q 047929          411 KINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN  490 (790)
Q Consensus       411 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  490 (790)
                                          .+.+..+  +..+++|++|++++|.+.+..+               +..+++|+.|++++
T Consensus       254 --------------------~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---------------~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          254 --------------------QISNLAP--LSGLTKLTELKLGANQISNISP---------------LAGLTALTNLELNE  296 (466)
T ss_dssp             --------------------CCCCCGG--GTTCTTCSEEECCSSCCCCCGG---------------GTTCTTCSEEECCS
T ss_pred             --------------------ccccchh--hhcCCCCCEEECCCCccCcccc---------------ccCCCccCeEEcCC
Confidence                                3332222  4455666666666666544311               34556666666666


Q ss_pred             CcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccC
Q 047929          491 NKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIF  570 (790)
Q Consensus       491 n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~  570 (790)
                      |.+.+..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|.+.+. + .+ ..+++|++|++++|++++..
T Consensus       297 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l-~~l~~L~~L~l~~n~l~~~~  369 (466)
T 1o6v_A          297 NQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S-SL-ANLTNINWLSAGHNQISDLT  369 (466)
T ss_dssp             SCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GG-TTCTTCCEEECCSSCCCBCG
T ss_pred             CcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h-hh-ccCCCCCEEeCCCCccCccc
Confidence            66664322  5556666666666666665543  55666666666666666532 2 22 35666677777777666554


Q ss_pred             CccccCCCCCcEEEccCCcccc
Q 047929          571 PIQICHLSSLQILDVAYNRLSG  592 (790)
Q Consensus       571 ~~~~~~l~~L~~L~ls~n~l~~  592 (790)
                      |  +..+++|+.|++++|.+++
T Consensus       370 ~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          370 P--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             G--GTTCTTCCEEECCCEEEEC
T ss_pred             h--hhcCCCCCEEeccCCcccC
Confidence            4  5666677777777766664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.98  E-value=3.2e-31  Score=287.81  Aligned_cols=361  Identities=19%  Similarity=0.190  Sum_probs=215.5

Q ss_pred             CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCccc
Q 047929          112 IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLA  191 (790)
Q Consensus       112 lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  191 (790)
                      .+..++++++|++|++++|.+...    ..++.++                          +|++|++++|.+..++   
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~----~~l~~l~--------------------------~L~~L~Ls~n~l~~~~---   80 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM----TGIEKLT--------------------------GLTKLICTSNNITTLD---   80 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC----TTGGGCT--------------------------TCSEEECCSSCCSCCC---
T ss_pred             cccChhHcCCCCEEEccCCCcccC----hhhcccC--------------------------CCCEEEccCCcCCeEc---
Confidence            344566777777777777765432    1234444                          4444444455444431   


Q ss_pred             CcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCC
Q 047929          192 SANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDL  271 (790)
Q Consensus       192 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  271 (790)
                      ++.+++|++|++++|.+.+  +|  +..+++|++|++++|.+.+ +|  ++.+++|++|++++|.+++.   .+..+++|
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L  150 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQL  150 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTC
T ss_pred             cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcC
Confidence            4455555555555555533  22  4455555555555555553 22  55555555555555555542   14455555


Q ss_pred             CEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcE
Q 047929          272 EYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHT  351 (790)
Q Consensus       272 ~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  351 (790)
                      ++|++++|...+.+   .+..+++|+.|++++|.+....        +..+++|+.|++++|.+++.   .+..+++|+.
T Consensus       151 ~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~--------l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~  216 (457)
T 3bz5_A          151 TELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD--------VSQNKLLNRLNCDTNNITKL---DLNQNIQLTF  216 (457)
T ss_dssp             CEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC--------CTTCTTCCEEECCSSCCSCC---CCTTCTTCSE
T ss_pred             CEEECCCCCccccc---ccccCCcCCEEECCCCccceec--------cccCCCCCEEECcCCcCCee---ccccCCCCCE
Confidence            55555555433333   1445556666666666554421        23445666666666666543   2556677777


Q ss_pred             EEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCC
Q 047929          352 LALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCH  431 (790)
Q Consensus       352 L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  431 (790)
                      |++++|++.+ +|  ++.+++|+.|++++|.+.+..    .+.+++|+.+++..+              +++.+++++|.
T Consensus       217 L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~n--------------~L~~L~l~~n~  275 (457)
T 3bz5_A          217 LDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQT--------------DLLEIDLTHNT  275 (457)
T ss_dssp             EECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTTC--------------CCSCCCCTTCT
T ss_pred             EECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccCC--------------CCCEEECCCCc
Confidence            7777777765 44  666777777777777766543    345566666665543              35566677777


Q ss_pred             CCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEE
Q 047929          432 LGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLN  511 (790)
Q Consensus       432 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  511 (790)
                      ..+.+|  +..+++|+.|++++|...+..|                ...++|+.|+++             .+++|+.|+
T Consensus       276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~----------------~~~~~L~~L~l~-------------~~~~L~~L~  324 (457)
T 3bz5_A          276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLD----------------CQAAGITELDLS-------------QNPKLVYLY  324 (457)
T ss_dssp             TCCEEE--CTTCTTCCCCCCTTCTTCCEEE----------------CTTCCCSCCCCT-------------TCTTCCEEE
T ss_pred             cCCccc--ccccccCCEEECCCCcccceec----------------cCCCcceEechh-------------hcccCCEEE
Confidence            666555  4567888888888887543221                122344444333             336788888


Q ss_pred             ccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCccc
Q 047929          512 LRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS  591 (790)
Q Consensus       512 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~  591 (790)
                      +++|++++.   .+..+++|+.|++++|.+.+         ++.|..|++++|.+.+.     +.+.+|+.+++++|.++
T Consensus       325 L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~  387 (457)
T 3bz5_A          325 LNNTELTEL---DVSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLT  387 (457)
T ss_dssp             CTTCCCSCC---CCTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEE
T ss_pred             CCCCccccc---ccccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEE
Confidence            888888874   37778888888888888763         34566677788877764     24456777888888888


Q ss_pred             ccCCcch
Q 047929          592 GSVPKCI  598 (790)
Q Consensus       592 ~~~p~~l  598 (790)
                      |.+|..+
T Consensus       388 g~ip~~~  394 (457)
T 3bz5_A          388 IAVSPDL  394 (457)
T ss_dssp             EECCTTC
T ss_pred             EEcChhH
Confidence            8888654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=1.6e-31  Score=276.12  Aligned_cols=261  Identities=31%  Similarity=0.544  Sum_probs=225.9

Q ss_pred             CCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccC-CcccccCCcCCCCCCCCCEEEccCCcccccCC
Q 047929          444 KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN-NKFTGSIPISMGTLTSLRSLNLRSNRLSGIIP  522 (790)
Q Consensus       444 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  522 (790)
                      .+++.|++++|.+.+.           ..+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++..|
T Consensus        50 ~~l~~L~L~~~~l~~~-----------~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  118 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKP-----------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP  118 (313)
T ss_dssp             CCEEEEEEECCCCSSC-----------EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred             ceEEEEECCCCCccCC-----------cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC
Confidence            4677778887776530           03445567788888888884 88887888888888999999999999888888


Q ss_pred             ccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCC-CCcEEEccCCcccccCCcchhcc
Q 047929          523 VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLS-SLQILDVAYNRLSGSVPKCINNF  601 (790)
Q Consensus       523 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~p~~l~~l  601 (790)
                      ..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|++++..|..+..++ +|+.|++++|.+.+.+|..+..+
T Consensus       119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l  197 (313)
T 1ogq_A          119 DFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             HHHhCCCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence            8888899999999999998888887775 789999999999999888888888887 99999999999988888766544


Q ss_pred             ccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCc
Q 047929          602 TAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNS  681 (790)
Q Consensus       602 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  681 (790)
                      +                                             |+.|++++|.+.+..|..+..+++|++|++++|.
T Consensus       198 ~---------------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          198 N---------------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             C---------------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             c---------------------------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence            3                                             4689999999998889999999999999999999


Q ss_pred             CCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcCCccCCccccCC-cccCCCCCC
Q 047929          682 FIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAPLSN  760 (790)
Q Consensus       682 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~~~~  760 (790)
                      +++..|. +..+++|++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+.+.+|+.+++.+| .+||.|++.
T Consensus       233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~  311 (313)
T 1ogq_A          233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSC
T ss_pred             eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCC
Confidence            9866665 88899999999999999999999999999999999999999999999989999999999999 699999888


Q ss_pred             CC
Q 047929          761 CT  762 (790)
Q Consensus       761 c~  762 (790)
                      |+
T Consensus       312 C~  313 (313)
T 1ogq_A          312 CT  313 (313)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.7e-30  Score=278.48  Aligned_cols=278  Identities=19%  Similarity=0.207  Sum_probs=144.7

Q ss_pred             CCCCCCCCCCcc-cCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCcc-ccCCCCCCEEe
Q 047929           25 LASWIGDVDCCE-WGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEY-IGSMDNLRYLN  102 (790)
Q Consensus        25 ~~~w~~~~~~~~-~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~-~~~l~~L~~L~  102 (790)
                      +++|....+||. |.+..|.     .+.+++............-..++++++|+++++.+.  .+|.. +..+++|++|+
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~-----~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--~l~~~~~~~l~~L~~L~   75 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCV-----FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLN   75 (390)
T ss_dssp             ----CCEECBCC------EE-----EESCEECSSCCCCEESCSSGGGCCCSEEEEESCEES--EECTHHHHHCCCCSEEE
T ss_pred             cCCCCCccceehhhhhhccc-----eeeeeeecccccccccccccccCCceEEEecCCchh--hCChhHhcccccCcEEE
Confidence            577876577764 5555553     122222222222122222345688888998888887  34544 67888888888


Q ss_pred             CCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCc
Q 047929          103 LSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC  182 (790)
Q Consensus       103 Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  182 (790)
                      +++|.+.+..+.++..+++|++|++++|.+                                                  
T Consensus        76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--------------------------------------------------  105 (390)
T 3o6n_A           76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--------------------------------------------------  105 (390)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCC--------------------------------------------------
T ss_pred             CCCCcccccChhhccCCCCcCEEECCCCCC--------------------------------------------------
Confidence            888888876666788888888888876643                                                  


Q ss_pred             cccccCcccCcCCCCCCEEECCCCCCCCCCcchh-ccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccc
Q 047929          183 KLHHFAPLASANFSSLNALDLSGNLFGKTSIPSW-VFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTI  261 (790)
Q Consensus       183 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~  261 (790)
                        ..+++..++++++|++|++++|.+.  .+|.. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+. 
T Consensus       106 --~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-  180 (390)
T 3o6n_A          106 --RYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-  180 (390)
T ss_dssp             --CCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-
T ss_pred             --CcCCHHHhcCCCCCCEEECCCCccC--cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-
Confidence              2333444555555555555555553  34433 24556666666666666555555566666666666666665543 


Q ss_pred             cccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccch
Q 047929          262 SDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTN  341 (790)
Q Consensus       262 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  341 (790)
                        .+..+++|+.|++++|.+.+      +...++|++|++++|.+......        ..++|+.|++++|.+++.  .
T Consensus       181 --~~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~l~~~~~~--------~~~~L~~L~l~~n~l~~~--~  242 (390)
T 3o6n_A          181 --DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVVRGP--------VNVELTILKLQHNNLTDT--A  242 (390)
T ss_dssp             --CGGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSSCCCEEECC--------CCSSCCEEECCSSCCCCC--G
T ss_pred             --ccccccccceeecccccccc------cCCCCcceEEECCCCeeeecccc--------ccccccEEECCCCCCccc--H
Confidence              23445556666666655432      22233455555555554332111        123444444444444321  2


Q ss_pred             hhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCc
Q 047929          342 QLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNN  382 (790)
Q Consensus       342 ~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~  382 (790)
                      .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR  283 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC
T ss_pred             HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc
Confidence            33444444444444444443334444444444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=6.9e-30  Score=281.70  Aligned_cols=260  Identities=20%  Similarity=0.196  Sum_probs=135.3

Q ss_pred             CCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeec
Q 047929          324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA  403 (790)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l  403 (790)
                      +++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+...... .|.++++|+.+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG-VFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT-SSTTCTTCCEEEC
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc-cccCCCCCCEEEC
Confidence            455555555555544455555556666666666655555555555666666666666655543322 3444555555555


Q ss_pred             CCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCC
Q 047929          404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDL  483 (790)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L  483 (790)
                      ++|.+....+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+..+.+.             .+..+++|
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------~l~~l~~L  178 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE-------------ALSHLHGL  178 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH-------------HHTTCTTC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh-------------HhcccCCC
Confidence            54444444444444445555555555555444444555555555555555555443221             22344555


Q ss_pred             cEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCC
Q 047929          484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS  563 (790)
Q Consensus       484 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~  563 (790)
                      +.|++++|.+.+..+..|..+++|+.|++++|...+..+.......+|+.|++++|.+. .+|...+..+++|++|++++
T Consensus       179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~  257 (477)
T 2id5_A          179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY  257 (477)
T ss_dssp             CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCS
T ss_pred             cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCC
Confidence            55555555555544445555555555555555544443333333345555555555554 34433334555555555555


Q ss_pred             CcccccCCccccCCCCCcEEEccCCcccccCCcch
Q 047929          564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI  598 (790)
Q Consensus       564 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l  598 (790)
                      |++++..+..+..+++|+.|++++|.+.+..|..+
T Consensus       258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (477)
T 2id5_A          258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF  292 (477)
T ss_dssp             SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred             CcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence            55555545555555555555555555554444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=2.1e-29  Score=265.61  Aligned_cols=304  Identities=24%  Similarity=0.347  Sum_probs=240.7

Q ss_pred             CCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEE
Q 047929           46 TGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL  125 (790)
Q Consensus        46 ~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L  125 (790)
                      ..++++|+++++.+.. + +.+..+++|++|++++|.+.+  ++. +..+++|++|++++|.+++ ++ ++..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~-~~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-I-QGIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-c-hhhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEE
Confidence            4688999999998863 3 358889999999999998884  444 8899999999999998887 44 68999999999


Q ss_pred             ECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCC
Q 047929          126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSG  205 (790)
Q Consensus       126 ~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~  205 (790)
                      ++++|.+...+    .+..+++|++|+++++.......   .+..+++|++|++++|.+....+  +..+++|++|++++
T Consensus       116 ~l~~n~i~~~~----~~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          116 YLNEDNISDIS----PLANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY  186 (347)
T ss_dssp             ECTTSCCCCCG----GGTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred             ECcCCcccCch----hhccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence            99998765433    37788999999999886665533   47888999999999988877655  77888999999999


Q ss_pred             CCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCccccccc
Q 047929          206 NLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI  285 (790)
Q Consensus       206 ~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~  285 (790)
                      |.+.+  ++. +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ +
T Consensus       187 n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~  258 (347)
T 4fmz_A          187 NQIED--ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I  258 (347)
T ss_dssp             SCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C
T ss_pred             Ccccc--ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C
Confidence            88844  444 7788889999999988875433  7888899999999998876544  7888899999999988774 3


Q ss_pred             CcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCc
Q 047929          286 SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPP  365 (790)
Q Consensus       286 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~  365 (790)
                      +  .+..+++|+.|++++|.+... +      .+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..| 
T Consensus       259 ~--~~~~l~~L~~L~l~~n~l~~~-~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-  328 (347)
T 4fmz_A          259 N--AVKDLTKLKMLNVGSNQISDI-S------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-  328 (347)
T ss_dssp             G--GGTTCTTCCEEECCSSCCCCC-G------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred             h--hHhcCCCcCEEEccCCccCCC-h------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence            2  377888899999988887664 1      34567788888888888887777788888888888888888876554 


Q ss_pred             CcCCCCCCCEEECcCCcCC
Q 047929          366 ASGELSSLTYLDLSNNNLN  384 (790)
Q Consensus       366 ~~~~l~~L~~L~l~~n~~~  384 (790)
                       ++.+++|+.|++++|.++
T Consensus       329 -~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          329 -LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             -GGGCTTCSEESSSCC---
T ss_pred             -hhhhhccceeehhhhccc
Confidence             777888888888888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.2e-29  Score=271.83  Aligned_cols=217  Identities=21%  Similarity=0.256  Sum_probs=134.4

Q ss_pred             cCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCC
Q 047929          477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRL  556 (790)
Q Consensus       477 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  556 (790)
                      +..+++|++|++++|.+++.   .+..+++|+.|++++|.+...     ...++|+.|++++|.+.. +|..   ..++|
T Consensus       161 ~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~-~~~~---~~~~L  228 (390)
T 3o6n_A          161 FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV-VRGP---VNVEL  228 (390)
T ss_dssp             TSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCE-EECC---CCSSC
T ss_pred             ccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeee-cccc---ccccc
Confidence            34445555555555555432   133445555566655555432     223456666666665542 2322   23566


Q ss_pred             cEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeecc
Q 047929          557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKG  636 (790)
Q Consensus       557 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  636 (790)
                      ++|++++|++++.  ..+..+++|++|++++|.+.+..|..+..+++                                 
T Consensus       229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---------------------------------  273 (390)
T 3o6n_A          229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR---------------------------------  273 (390)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS---------------------------------
T ss_pred             cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc---------------------------------
Confidence            6666666666542  34566666777777777666555554444333                                 


Q ss_pred             chhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccC
Q 047929          637 FMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSS  716 (790)
Q Consensus       637 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~  716 (790)
                                 |++|++++|++.+ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++... |  +..
T Consensus       274 -----------L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~  337 (390)
T 3o6n_A          274 -----------LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST  337 (390)
T ss_dssp             -----------CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred             -----------CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chh
Confidence                       3466777776663 4555567889999999999887 5677788889999999999998854 3  677


Q ss_pred             CCCCCEEECcCCcccccCCCCCcCCccCCccccCC-cccCCC
Q 047929          717 LSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAP  757 (790)
Q Consensus       717 l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~  757 (790)
                      +++|++|++++|++...-. ...+..+....+.++ ..|..+
T Consensus       338 ~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          338 HHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             TCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred             hccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence            8899999999999876422 123445555555555 555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2e-29  Score=284.98  Aligned_cols=281  Identities=20%  Similarity=0.227  Sum_probs=152.6

Q ss_pred             CCCCCCCCCCCCCCcc----cCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCC
Q 047929           21 PSNHLASWIGDVDCCE----WGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMD   96 (790)
Q Consensus        21 ~~~~~~~w~~~~~~~~----~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~   96 (790)
                      .+..+++|....+||.    |..+.|..   +   ++-.....  .....-..+.+++.++++++.+... -+..+..++
T Consensus         5 ~~~~l~~~~~~~~C~~~~~~~~c~~~~~---~---i~~~~~~~--~~~~~~l~l~~l~~l~l~~~~l~~l-p~~~~~~l~   75 (597)
T 3oja_B            5 QRYNVKPRQPEYKCIDSNLQYDCVFYDV---H---IDMQTQDV--YFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFR   75 (597)
T ss_dssp             ------CCCSEECCCCC--CCSEEECSC---E---ECSSCCCC--EESCSSGGGCCCSEEEESSCEESEE-CTHHHHHCC
T ss_pred             ccccccCCCCCCcCcccCcCceeEecCc---e---eccccccc--ccCcccccCCCceEEEeeCCCCCCc-CHHHHccCC
Confidence            3456788976567773    55555531   1   11111111  1111223467888888888887743 234467788


Q ss_pred             CCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCE
Q 047929           97 NLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKV  176 (790)
Q Consensus        97 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~  176 (790)
                      +|++|++++|.+.+..|..++.+++|++|++++|.+                                            
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--------------------------------------------  111 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--------------------------------------------  111 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--------------------------------------------
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC--------------------------------------------
Confidence            888888888888886667788888888888776643                                            


Q ss_pred             EEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchh-ccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCC
Q 047929          177 LKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSW-VFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYN  255 (790)
Q Consensus       177 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~  255 (790)
                              ..+++..|+++++|++|++++|.+.  .+|.. +..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus       112 --------~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          112 --------RYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             --------CCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             --------CCCCHHHHcCCCCCCEEEeeCCCCC--CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence                    3333444555556666666666553  23333 345666666666666666555556666666666666666


Q ss_pred             cCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCcc
Q 047929          256 QFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKI  335 (790)
Q Consensus       256 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (790)
                      .+.+..   +..+++|+.|++++|.+.+      +...++|+.|++++|.+......        ..++|+.|++++|.+
T Consensus       182 ~l~~~~---~~~l~~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n~l~~~~~~--------~~~~L~~L~L~~n~l  244 (597)
T 3oja_B          182 RLTHVD---LSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVVRGP--------VNVELTILKLQHNNL  244 (597)
T ss_dssp             CCSBCC---GGGCTTCSEEECCSSCCSE------EECCTTCSEEECCSSCCCEEECS--------CCSCCCEEECCSSCC
T ss_pred             CCCCcC---hhhhhhhhhhhcccCcccc------ccCCchhheeeccCCcccccccc--------cCCCCCEEECCCCCC
Confidence            665432   3345566666666665542      22334555666665555432221        113455555555544


Q ss_pred             ccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcC
Q 047929          336 SGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL  383 (790)
Q Consensus       336 ~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~  383 (790)
                      ++  +..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+
T Consensus       245 ~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          245 TD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             CC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             CC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence            43  23344455555555555555444444444444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.9e-29  Score=283.69  Aligned_cols=332  Identities=20%  Similarity=0.233  Sum_probs=188.1

Q ss_pred             CCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeec
Q 047929          324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA  403 (790)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l  403 (790)
                      +++.++++++.+....+..+..+++|+.|++++|.+.+..+..|+.+++|+.|++++|.+.+.++. .|+++++|+.|++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  130 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVL  130 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEEC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEe
Confidence            344444444444433333344445555555555554444444444555555555555544433222 2233333333333


Q ss_pred             CCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCC
Q 047929          404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDL  483 (790)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L  483 (790)
                      ++|.+                        ....+..|..+++|++|++++|.+..++             |..+..+++|
T Consensus       131 ~~n~l------------------------~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~~l~~L  173 (597)
T 3oja_B          131 ERNDL------------------------SSLPRGIFHNTPKLTTLSMSNNNLERIE-------------DDTFQATTSL  173 (597)
T ss_dssp             CSSCC------------------------CCCCTTTTTTCTTCCEEECCSSCCCBCC-------------TTTTTTCTTC
T ss_pred             eCCCC------------------------CCCCHHHhccCCCCCEEEeeCCcCCCCC-------------hhhhhcCCcC
Confidence            33322                        2222222344455555555555544322             2233445555


Q ss_pred             cEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCC
Q 047929          484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS  563 (790)
Q Consensus       484 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~  563 (790)
                      +.|++++|.+++. +  +..+++|+.|++++|.+.+.     ...++|+.|++++|.+.. ++..   ..++|+.|++++
T Consensus       174 ~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~-~~~~---~~~~L~~L~L~~  241 (597)
T 3oja_B          174 QNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV-VRGP---VNVELTILKLQH  241 (597)
T ss_dssp             CEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCE-EECS---CCSCCCEEECCS
T ss_pred             cEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccc-cccc---cCCCCCEEECCC
Confidence            5555555555532 1  33445566666666655432     233456666666665542 2222   135667777777


Q ss_pred             CcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhh
Q 047929          564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNS  643 (790)
Q Consensus       564 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  643 (790)
                      |.+++  +..+..+++|+.|++++|.+.+..|..+.++++                                        
T Consensus       242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~----------------------------------------  279 (597)
T 3oja_B          242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR----------------------------------------  279 (597)
T ss_dssp             SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS----------------------------------------
T ss_pred             CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccC----------------------------------------
Confidence            76664  245666777777777777776666655554443                                        


Q ss_pred             cccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEE
Q 047929          644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHL  723 (790)
Q Consensus       644 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  723 (790)
                          |+.|+|++|.+.+ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|.+... |  +..+++|+.|
T Consensus       280 ----L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L  350 (597)
T 3oja_B          280 ----LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL  350 (597)
T ss_dssp             ----CCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred             ----CCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence                3467777777764 4555677889999999999988 6777788889999999999998854 3  6677899999


Q ss_pred             ECcCCcccccCCCCCcCCccCCccccCC-cccCCC
Q 047929          724 NLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAP  757 (790)
Q Consensus       724 ~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~  757 (790)
                      ++++|++.+..+ ...+..+....+.++ ..|+.+
T Consensus       351 ~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          351 TLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             ECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred             EeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence            999999886532 223445555556666 677654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.5e-28  Score=259.22  Aligned_cols=307  Identities=24%  Similarity=0.307  Sum_probs=232.4

Q ss_pred             cCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCC
Q 047929           66 ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGP  145 (790)
Q Consensus        66 ~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l  145 (790)
                      .+..+++|++|+++++.+..  ++. +..+++|++|++++|.+++ ++. +..+++|++|++++|.+..    +..+.++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~----~~~~~~l  109 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD----ISALQNL  109 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC----CGGGTTC
T ss_pred             cchhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC----chHHcCC
Confidence            45678999999999999984  444 8889999999999999987 444 9999999999999997654    3457888


Q ss_pred             CCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcE
Q 047929          146 SLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVF  225 (790)
Q Consensus       146 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~  225 (790)
                      ++|++|+++++.+...+.    +..+++|++|++++|......+ .+..+++|++|++++|.+..  ++. +..+++|++
T Consensus       110 ~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~--~~~-~~~l~~L~~  181 (347)
T 4fmz_A          110 TNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--VTP-IANLTDLYS  181 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCSE
T ss_pred             CcCCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC--chh-hccCCCCCE
Confidence            889999998888777643    7788888888888886544433 37788888888888888743  343 677888888


Q ss_pred             EEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCC
Q 047929          226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNE  305 (790)
Q Consensus       226 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~  305 (790)
                      |++++|.+.+. +. +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+ ++.  +..+++|++|++++|.
T Consensus       182 L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          182 LSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP--LANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             EECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSC
T ss_pred             EEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc--hhcCCCCCEEECCCCc
Confidence            88888887743 33 7788888888888888876544  7778888888888888763 332  6778888888888887


Q ss_pred             CCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCC
Q 047929          306 LGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNG  385 (790)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~  385 (790)
                      +... +      .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+++
T Consensus       255 l~~~-~------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          255 ISDI-N------AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             CCCC-G------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             cCCC-h------hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence            7653 1      345677888888888877754  346777888888888888877677777778888888888888776


Q ss_pred             cCChhhhccccccceeecCCCcc
Q 047929          386 MISEIHFGNLTELAFFYANGNSV  408 (790)
Q Consensus       386 ~~~~~~~~~l~~L~~l~l~~~~~  408 (790)
                      ..+   +..+++|+.+++++|.+
T Consensus       326 ~~~---~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          326 IRP---LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CGG---GGGCTTCSEESSSCC--
T ss_pred             ccC---hhhhhccceeehhhhcc
Confidence            543   55666666666666544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.1e-29  Score=263.84  Aligned_cols=276  Identities=17%  Similarity=0.183  Sum_probs=215.8

Q ss_pred             ChHHHHHHHHHHhhcC-CCCCCCCCCC----CCCCCCcccCceeecC--------CCCcEEEEEcCCCCCCccccccCcC
Q 047929            3 CLESERVALIKLKQDF-KDPSNHLASW----IGDVDCCEWGGVVCNN--------ITGHVLELNLERSELGGKINPALVD   69 (790)
Q Consensus         3 ~~~~~~~~~~~~~~~~-~~~~~~~~~w----~~~~~~~~~~~~~c~~--------~~~~v~~L~L~~~~~~~~~~~~l~~   69 (790)
                      +.++|+.||++||+.+ .|+.+....|    ....++|.|.|+.|..        ...+|++|+|+++.++ .+|+.+++
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~  102 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR  102 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence            3456899999999988 5787778889    4457889999999942        3478999999999998 78888999


Q ss_pred             CCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccc-cccCccccCCCCCC
Q 047929           70 LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYEL-RVEDISWLAGPSLL  148 (790)
Q Consensus        70 l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~-~~~~~~~l~~l~~L  148 (790)
                      +++|++|+|++|.+.  .+|+.++.+++|++|++++|.+. .+|..++++++|++|++++|.+.. .+..+..       
T Consensus       103 l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-------  172 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS-------  172 (328)
T ss_dssp             GTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE-------
T ss_pred             CCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh-------
Confidence            999999999999998  58999999999999999999999 489999999999999999875332 1111110       


Q ss_pred             cEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEc
Q 047929          149 EHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDL  228 (790)
Q Consensus       149 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l  228 (790)
                        ..+           ...+.++++|++|++++|.+..+ +..+..+++|++|++++|.+.  .+|..+..+++|++|++
T Consensus       173 --~~~-----------~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          173 --TDA-----------SGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDL  236 (328)
T ss_dssp             --EC------------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEEC
T ss_pred             --ccc-----------hhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEEC
Confidence              000           01345677788888888877744 445777888888888888774  46667777888888888


Q ss_pred             cCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCC
Q 047929          229 SSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL  306 (790)
Q Consensus       229 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~  306 (790)
                      ++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.+|.. +.++++|+.+++..+.+
T Consensus       237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSCTTCEEECCGGGS
T ss_pred             cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH-HhhccCceEEeCCHHHH
Confidence            888777777877888888888888888777777777888888888888888877777766 77778888777766544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=5.1e-27  Score=245.17  Aligned_cols=248  Identities=23%  Similarity=0.261  Sum_probs=178.5

Q ss_pred             cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEEC
Q 047929           48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDL  127 (790)
Q Consensus        48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l  127 (790)
                      ++++++++++.++ .+|..+.  +++++|++++|.+.+. .+..+.++++|++|++++|.+++..|.+++.+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4567777877776 5565554  6899999999999865 4557899999999999999999877999999999999999


Q ss_pred             cCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccc--cCcccCcCCCCCCEEECCC
Q 047929          128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH--FAPLASANFSSLNALDLSG  205 (790)
Q Consensus       128 s~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~  205 (790)
                      ++|.+...+..+     .++|++|+++++.+.....  ..+.++++|++|++++|.+..  ..+..+..+++|++|++++
T Consensus       108 s~n~l~~l~~~~-----~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          108 SKNQLKELPEKM-----PKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             CSSCCSBCCSSC-----CTTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             CCCcCCccChhh-----cccccEEECCCCcccccCH--hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence            999876443322     1577777777777665521  256677777777777777654  5556677777777777777


Q ss_pred             CCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCccccccc
Q 047929          206 NLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI  285 (790)
Q Consensus       206 ~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~  285 (790)
                      |.+.  .+|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+
T Consensus       181 n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l  255 (330)
T 1xku_A          181 TNIT--TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV  255 (330)
T ss_dssp             SCCC--SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred             Cccc--cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence            7763  3555443  67777777777777666667777777777777777777666666777777777777777766 44


Q ss_pred             CcccccCCCCCCEEEccCCCCCCCcch
Q 047929          286 SSIGLENLTFIKTLDLSFNELGQDISE  312 (790)
Q Consensus       286 ~~~~l~~l~~L~~L~l~~~~~~~~~~~  312 (790)
                      |.. +..+++|++|++++|.+......
T Consensus       256 p~~-l~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          256 PGG-LADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             CTT-TTTCSSCCEEECCSSCCCCCCTT
T ss_pred             Chh-hccCCCcCEEECCCCcCCccChh
Confidence            444 56667777777777766654443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=6.3e-27  Score=244.49  Aligned_cols=289  Identities=19%  Similarity=0.250  Sum_probs=181.1

Q ss_pred             CCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEc
Q 047929          348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRL  427 (790)
Q Consensus       348 ~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l  427 (790)
                      +++.++++++.+. .+|..+  .+.++.|++++|.+++.... .+..                        +++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~-~~~~------------------------l~~L~~L~L   83 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDG-DFKN------------------------LKNLHTLIL   83 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTT-TTTT------------------------CTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChh-hhcc------------------------CCCCCEEEC
Confidence            6788888888776 455443  26788888888877654332 2333                        344445555


Q ss_pred             CCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047929          428 RSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSL  507 (790)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  507 (790)
                      ++|.+.+..|..+..+++|++|++++|.+..++.              .+  .++|++|++++|.+++..+..+..+++|
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~--------------~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L  147 (330)
T 1xku_A           84 INNKISKISPGAFAPLVKLERLYLSKNQLKELPE--------------KM--PKTLQELRVHENEITKVRKSVFNGLNQM  147 (330)
T ss_dssp             CSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS--------------SC--CTTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             CCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh--------------hh--cccccEEECCCCcccccCHhHhcCCccc
Confidence            5555555556666777777777777777654321              11  1567777777777776555556777777


Q ss_pred             CEEEccCCcccc--cCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEc
Q 047929          508 RSLNLRSNRLSG--IIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDV  585 (790)
Q Consensus       508 ~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  585 (790)
                      +.|++++|.+..  ..+..+..+++|++|++++|.+. .+|..+   .++|++|++++|++++..+..+..+++|+.|++
T Consensus       148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  223 (330)
T 1xku_A          148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL  223 (330)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred             cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            777777777643  45566677777777777777766 455443   266777777777777666666777777777777


Q ss_pred             cCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcc
Q 047929          586 AYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPME  665 (790)
Q Consensus       586 s~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  665 (790)
                      ++|.+.+..+..+..+++                                            |++|++++|.+. .+|..
T Consensus       224 s~n~l~~~~~~~~~~l~~--------------------------------------------L~~L~L~~N~l~-~lp~~  258 (330)
T 1xku_A          224 SFNSISAVDNGSLANTPH--------------------------------------------LRELHLNNNKLV-KVPGG  258 (330)
T ss_dssp             CSSCCCEECTTTGGGSTT--------------------------------------------CCEEECCSSCCS-SCCTT
T ss_pred             CCCcCceeChhhccCCCC--------------------------------------------CCEEECCCCcCc-cCChh
Confidence            777766554444433332                                            346777777666 56666


Q ss_pred             cccCCCCCEEeCCCCcCCcCCCccccC------CCCCCEEeCcCccCcc--ccCccccCCCCCCEEECcCCc
Q 047929          666 VTNLKGLQSLNLSHNSFIGKIPETIGN------MRSIESLDLSGNQISG--KIPQSMSSLSFLNHLNLSDNK  729 (790)
Q Consensus       666 ~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~  729 (790)
                      +..+++|++|++++|++++..+..|..      .++|+.|++++|++..  ..|..|..+.+++.+++++|+
T Consensus       259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            666677777777777766555555432      2566667777766643  345566666666666666663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=3.7e-27  Score=246.31  Aligned_cols=293  Identities=19%  Similarity=0.175  Sum_probs=193.0

Q ss_pred             cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEEC
Q 047929           48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDL  127 (790)
Q Consensus        48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l  127 (790)
                      ++++++++++.++ .+|..+.  ++|++|++++|.+.+. .++.+.++++|++|++++|.+++..|.+++++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4567788888876 5666553  6899999999998854 4668999999999999999999877889999999999999


Q ss_pred             cCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccc--cCcccCcCCCCCCEEECCC
Q 047929          128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH--FAPLASANFSSLNALDLSG  205 (790)
Q Consensus       128 s~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~  205 (790)
                      ++|.+...+..+.     ++|++|+++++.+...+.  ..+..+++|++|++++|.+..  ..+..+..+ +|++|++++
T Consensus       110 ~~n~l~~l~~~~~-----~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~  181 (332)
T 2ft3_A          110 SKNHLVEIPPNLP-----SSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE  181 (332)
T ss_dssp             CSSCCCSCCSSCC-----TTCCEEECCSSCCCCCCS--GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred             CCCcCCccCcccc-----ccCCEEECCCCccCccCH--hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence            9998764433221     677777777777665521  146667777777777777653  455566666 777777777


Q ss_pred             CCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCccccccc
Q 047929          206 NLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI  285 (790)
Q Consensus       206 ~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~  285 (790)
                      |.+..  +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+
T Consensus       182 n~l~~--l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l  256 (332)
T 2ft3_A          182 AKLTG--IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV  256 (332)
T ss_dssp             SBCSS--CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred             CCCCc--cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence            76633  555443  56777777777776666566777777777777777776666666666777777777777666 44


Q ss_pred             CcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccC--CCC
Q 047929          286 SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS--GPL  363 (790)
Q Consensus       286 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~--~~~  363 (790)
                      |.. +..+++|+.|++++|.+.......+.     ...                  .....+.|+.+++++|.+.  +..
T Consensus       257 p~~-l~~l~~L~~L~l~~N~l~~~~~~~~~-----~~~------------------~~~~~~~l~~L~l~~N~~~~~~~~  312 (332)
T 2ft3_A          257 PAG-LPDLKLLQVVYLHTNNITKVGVNDFC-----PVG------------------FGVKRAYYNGISLFNNPVPYWEVQ  312 (332)
T ss_dssp             CTT-GGGCTTCCEEECCSSCCCBCCTTSSS-----CSS------------------CCSSSCCBSEEECCSSSSCGGGSC
T ss_pred             Chh-hhcCccCCEEECCCCCCCccChhHcc-----ccc------------------cccccccccceEeecCcccccccC
Confidence            444 56666666666666666554433111     000                  0001245566666666554  345


Q ss_pred             CcCcCCCCCCCEEECcCC
Q 047929          364 PPASGELSSLTYLDLSNN  381 (790)
Q Consensus       364 ~~~~~~l~~L~~L~l~~n  381 (790)
                      |..+..++.|+.+++++|
T Consensus       313 ~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          313 PATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GGGGTTBCCSTTEEC---
T ss_pred             cccccccchhhhhhcccc
Confidence            555666666666666655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=4.2e-27  Score=245.91  Aligned_cols=288  Identities=20%  Similarity=0.266  Sum_probs=195.1

Q ss_pred             CCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEc
Q 047929          348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRL  427 (790)
Q Consensus       348 ~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l  427 (790)
                      +++.++++++.+. .+|..+  .+.++.|++++|.+.+..                         +..+..+++|+.|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~-------------------------~~~~~~l~~L~~L~L   85 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELR-------------------------KDDFKGLQHLYALVL   85 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEEC-------------------------TTTTTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccC-------------------------HhHhhCCCCCcEEEC
Confidence            5677777777665 444433  256667777666655432                         223344455555566


Q ss_pred             CCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047929          428 RSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSL  507 (790)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  507 (790)
                      ++|.+.+..|..+..+++|++|++++|.+..+++              .+.  ++|++|++++|.+.+..+..|..+++|
T Consensus        86 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--------------~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           86 VNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--------------NLP--SSLVELRIHDNRIRKVPKGVFSGLRNM  149 (332)
T ss_dssp             CSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS--------------SCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred             CCCccCccCHhHhhCcCCCCEEECCCCcCCccCc--------------ccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence            6666655566667777888888888887764322              111  678888888888876555567778888


Q ss_pred             CEEEccCCcccc--cCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEc
Q 047929          508 RSLNLRSNRLSG--IIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDV  585 (790)
Q Consensus       508 ~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  585 (790)
                      +.|++++|.++.  ..+..+..+ +|+.|++++|.+. .+|..+   .++|++|++++|++++..+..+..+++|+.|++
T Consensus       150 ~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred             CEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            888888888753  556666666 8888888888876 455543   267888888888887776677778888888888


Q ss_pred             cCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcc
Q 047929          586 AYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPME  665 (790)
Q Consensus       586 s~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  665 (790)
                      ++|.+.+..+..+..+++                                            |++|++++|++. .+|..
T Consensus       225 ~~N~l~~~~~~~~~~l~~--------------------------------------------L~~L~L~~N~l~-~lp~~  259 (332)
T 2ft3_A          225 GHNQIRMIENGSLSFLPT--------------------------------------------LRELHLDNNKLS-RVPAG  259 (332)
T ss_dssp             CSSCCCCCCTTGGGGCTT--------------------------------------------CCEEECCSSCCC-BCCTT
T ss_pred             CCCcCCcCChhHhhCCCC--------------------------------------------CCEEECCCCcCe-ecChh
Confidence            888877655555544333                                            457888888777 67777


Q ss_pred             cccCCCCCEEeCCCCcCCcCCCccccCC------CCCCEEeCcCccCc--cccCccccCCCCCCEEECcCCc
Q 047929          666 VTNLKGLQSLNLSHNSFIGKIPETIGNM------RSIESLDLSGNQIS--GKIPQSMSSLSFLNHLNLSDNK  729 (790)
Q Consensus       666 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l------~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~l~~n~  729 (790)
                      +..+++|++|++++|++++..+..|...      .+|+.|++++|++.  ...|..|..+++|+.+++++|+
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            7778888888888888776655555442      56778888888776  5566777777888888887774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=1.5e-31  Score=294.04  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=36.6

Q ss_pred             CcEEEEEcCCCCCCcccccc-CcCCCCCCEEeCCCCCCCCC---CcCccccCCCCCCEEeCCCCcccc
Q 047929           47 GHVLELNLERSELGGKINPA-LVDLKHLNLLDLSGNDFQGI---QIPEYIGSMDNLRYLNLSGAGFAG  110 (790)
Q Consensus        47 ~~v~~L~L~~~~~~~~~~~~-l~~l~~L~~L~Ls~~~~~~~---~l~~~~~~l~~L~~L~Ls~~~~~~  110 (790)
                      .++++|+++++.+++..... +..+++|++|++++|.+.+.   .+++.+..+++|++|++++|.+.+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~   70 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD   70 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence            45666666666665433322 55666666666666665532   234555556666666666666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=1.1e-30  Score=287.10  Aligned_cols=368  Identities=18%  Similarity=0.135  Sum_probs=208.8

Q ss_pred             CCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccc----cchhhccCCCCcEEEccCcccCCCCCcCc-C
Q 047929          294 TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQ----LTNQLGLFKNLHTLALSDNSVSGPLPPAS-G  368 (790)
Q Consensus       294 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~i~~~~~~~~-~  368 (790)
                      ++|++|+++++.+......  .  .+..+++|++|++++|.+...    ++..+..+++|++|++++|.+.+..+..+ .
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~--~--~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~   78 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWA--E--LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   78 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHH--H--HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccceehhhhhcccCchhHH--H--HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence            4677888888877543321  0  245667888888888887642    35556677888888888887764322222 2


Q ss_pred             CCC----CCCEEECcCCcCCCcC---ChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccc
Q 047929          369 ELS----SLTYLDLSNNNLNGMI---SEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLH  441 (790)
Q Consensus       369 ~l~----~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  441 (790)
                      .++    +|++|++++|.+....   ....+..+++|+.+++++|.+.......+..                   ....
T Consensus        79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------------------~l~~  139 (461)
T 1z7x_W           79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-------------------GLLD  139 (461)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-------------------HHTS
T ss_pred             HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH-------------------HHhc
Confidence            233    6888888888766422   1123455556666555555443211110000                   0011


Q ss_pred             cCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCC-----CCCCCCEEEccCCc
Q 047929          442 SQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMG-----TLTSLRSLNLRSNR  516 (790)
Q Consensus       442 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~  516 (790)
                      ..++|++|++++|.+.+....         .++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.
T Consensus       140 ~~~~L~~L~L~~n~l~~~~~~---------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  210 (461)
T 1z7x_W          140 PQCRLEKLQLEYCSLSAASCE---------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG  210 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHH---------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred             CCCcceEEECCCCCCCHHHHH---------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence            234566666666665543211         1122234456666666666665543222221     23466777777776


Q ss_pred             cccc----CCccccCCCCCcEEECcCCcccccCchh----hhhcCCCCcEEEcCCCccccc----CCccccCCCCCcEEE
Q 047929          517 LSGI----IPVPFENCSQLVALDMGENEFVGNIPTW----MGERFSRLRILNLRSNKLHGI----FPIQICHLSSLQILD  584 (790)
Q Consensus       517 i~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~  584 (790)
                      ++..    .+..+..+++|++|++++|.+.+.....    +...+++|++|++++|++++.    ++..+..+++|++|+
T Consensus       211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  290 (461)
T 1z7x_W          211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS  290 (461)
T ss_dssp             CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred             CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEE
Confidence            6643    2344556677777777777665432211    212356777777777776643    344455567777777


Q ss_pred             ccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCC---
Q 047929          585 VAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE---  661 (790)
Q Consensus       585 ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---  661 (790)
                      +++|.+.+..+..+...-                                       ....+.|++|++++|.+++.   
T Consensus       291 Ls~n~i~~~~~~~l~~~l---------------------------------------~~~~~~L~~L~L~~n~l~~~~~~  331 (461)
T 1z7x_W          291 LAGNELGDEGARLLCETL---------------------------------------LEPGCQLESLWVKSCSFTAACCS  331 (461)
T ss_dssp             CTTCCCHHHHHHHHHHHH---------------------------------------TSTTCCCCEEECTTSCCBGGGHH
T ss_pred             CCCCCCchHHHHHHHHHh---------------------------------------ccCCccceeeEcCCCCCchHHHH
Confidence            777766533222221100                                       00123466777777777643   


Q ss_pred             -CCcccccCCCCCEEeCCCCcCCcCCCccccC-----CCCCCEEeCcCccCcc----ccCccccCCCCCCEEECcCCccc
Q 047929          662 -IPMEVTNLKGLQSLNLSHNSFIGKIPETIGN-----MRSIESLDLSGNQISG----KIPQSMSSLSFLNHLNLSDNKLV  731 (790)
Q Consensus       662 -~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~  731 (790)
                       ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+..    .+|..+..+++|++|++++|++.
T Consensus       332 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence             3445566677778888777776544433332     5678888888887775    56677777777888888888776


Q ss_pred             c
Q 047929          732 G  732 (790)
Q Consensus       732 ~  732 (790)
                      +
T Consensus       412 ~  412 (461)
T 1z7x_W          412 D  412 (461)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=6.4e-26  Score=239.15  Aligned_cols=292  Identities=22%  Similarity=0.214  Sum_probs=191.8

Q ss_pred             CCCCCCCCCCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCC
Q 047929           25 LASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLS  104 (790)
Q Consensus        25 ~~~w~~~~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls  104 (790)
                      ...|..+..+|.|.++ |+          .+++.++ .+|..+.  ++|++|++++|.+.+. .++.+.++++|++|+++
T Consensus        20 ~~~~~~~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~   84 (353)
T 2z80_A           20 EESSNQASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLT   84 (353)
T ss_dssp             -------CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECT
T ss_pred             ccCCCccCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECC
Confidence            3445444567888876 53          4566665 5565554  5899999999998854 34478899999999999


Q ss_pred             CCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccc
Q 047929          105 GAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL  184 (790)
Q Consensus       105 ~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  184 (790)
                      +|.+++..|.++.++++|++|++++|.+...+.                            ..+..+++|++|++++|.+
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------------------------~~~~~l~~L~~L~L~~n~l  136 (353)
T 2z80_A           85 SNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS----------------------------SWFKPLSSLTFLNLLGNPY  136 (353)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH----------------------------HHHTTCTTCSEEECTTCCC
T ss_pred             CCccCccCHhhcCCCCCCCEEECCCCcCCcCCH----------------------------hHhCCCccCCEEECCCCCC
Confidence            999998777889999999999998886442211                            1356667777777777777


Q ss_pred             cccCc-ccCcCCCCCCEEECCCCC-CCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCcccc
Q 047929          185 HHFAP-LASANFSSLNALDLSGNL-FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTIS  262 (790)
Q Consensus       185 ~~~~~-~~l~~l~~L~~L~L~~~~-l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~  262 (790)
                      ..++. ..+..+++|++|++++|. +.. ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.....
T Consensus       137 ~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  215 (353)
T 2z80_A          137 KTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE  215 (353)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH
T ss_pred             cccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh
Confidence            66655 566677777777777763 322 224455666667777777776666666666666667777766666654433


Q ss_pred             ccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCcccc----c
Q 047929          263 DCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISG----Q  338 (790)
Q Consensus       263 ~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~  338 (790)
                      ..+..+++|+.|++++|.+.+..+.. +.                          .......++.++++++.+.+    .
T Consensus       216 ~~~~~~~~L~~L~L~~n~l~~~~~~~-l~--------------------------~~~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          216 IFVDVTSSVECLELRDTDLDTFHFSE-LS--------------------------TGETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             HHHHHTTTEEEEEEESCBCTTCCCC---------------------------------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             hhhhhcccccEEECCCCccccccccc-cc--------------------------cccccchhhccccccccccCcchhh
Confidence            34444566666666666655322111 10                          11123345566666665543    3


Q ss_pred             cchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcC
Q 047929          339 LTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMI  387 (790)
Q Consensus       339 ~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  387 (790)
                      +|..+..+++|++|++++|+++...+..++.+++|++|++++|++.+..
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            5667888999999999999998444444689999999999999987644

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=3.7e-29  Score=284.36  Aligned_cols=239  Identities=14%  Similarity=0.111  Sum_probs=118.8

Q ss_pred             CcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCC--CCcCccc------------cCCCCCC
Q 047929           34 CCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQG--IQIPEYI------------GSMDNLR   99 (790)
Q Consensus        34 ~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~--~~l~~~~------------~~l~~L~   99 (790)
                      |++|.++.+..    -+.+.+.++ .....+..+.++++|++|+++++....  ..+|..+            ..+++|+
T Consensus        41 ck~W~~~~~~~----~~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~  115 (592)
T 3ogk_B           41 CRRWFKIDSET----REHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK  115 (592)
T ss_dssp             CHHHHHHHHHH----CCEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred             hHHHHHhhhcc----ccEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCC
Confidence            44788876531    123334333 222334556788899999998754210  0122222            2678888


Q ss_pred             EEeCCCCcccccCCCCCCC-CC-CCcEEECcCCcccccccCcc-ccCCCCCCcEEECCCCCCCCC-ch-hHHhhCCCCCC
Q 047929          100 YLNLSGAGFAGWIPHQLGN-LS-NLMHLDLSGSYYELRVEDIS-WLAGPSLLEHLDTSDVDLIKA-SD-WLLVINSLPSL  174 (790)
Q Consensus       100 ~L~Ls~~~~~~~lp~~l~~-l~-~L~~L~ls~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~-~~~~l~~l~~L  174 (790)
                      +|++++|.+++..+..+.. ++ +|++|++++|.. .....+. ...++++|++|+++++.+.+. .. +......+++|
T Consensus       116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L  194 (592)
T 3ogk_B          116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL  194 (592)
T ss_dssp             EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred             eEEeeccEecHHHHHHHHHhccccCcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence            8888888776655555544 33 388888887751 1111111 123456666666666654433 11 22334455566


Q ss_pred             CEEEccCccccccC----cccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCC---CCCCccCCCCCCC
Q 047929          175 KVLKLFSCKLHHFA----PLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFR---GPIPDGFKNLTSL  247 (790)
Q Consensus       175 ~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~---~~~p~~~~~l~~L  247 (790)
                      ++|++++|.+..+.    +..+..+++|++|++++|.+.  .+|..+..+++|++|+++.....   ...+..+..+++|
T Consensus       195 ~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L  272 (592)
T 3ogk_B          195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL--ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL  272 (592)
T ss_dssp             CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG--GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred             cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH--HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence            66666555554222    122334555555555555542  24455555555555555532211   1222334444555


Q ss_pred             cEEeCCCCcCCccccccccCCCCCCEEEccCccc
Q 047929          248 RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRL  281 (790)
Q Consensus       248 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l  281 (790)
                      +.|++.++.. ...+..+..+++|++|++++|.+
T Consensus       273 ~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          273 CRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             CEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCC
T ss_pred             cccCccccch-hHHHHHHhhcCCCcEEecCCCcC
Confidence            5555544321 22333344444455555554443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.3e-25  Score=231.95  Aligned_cols=253  Identities=25%  Similarity=0.303  Sum_probs=154.8

Q ss_pred             cccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCccccc--C
Q 047929           35 CEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGW--I  112 (790)
Q Consensus        35 ~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~--l  112 (790)
                      |.|.++.|.+            .+++ .+|..+.  ++|++|++++|.+... -+..+.++++|++|++++|.+...  .
T Consensus         7 C~~~~l~c~~------------~~l~-~ip~~~~--~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~   70 (306)
T 2z66_A            7 CSGTEIRCNS------------KGLT-SVPTGIP--SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCC   70 (306)
T ss_dssp             EETTEEECCS------------SCCS-SCCSCCC--TTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred             eCCCEEEcCC------------CCcc-cCCCCCC--CCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCc
Confidence            6787777753            2333 3333222  4666666666666632 223356666666666666665532  2


Q ss_pred             CCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccC
Q 047929          113 PHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLAS  192 (790)
Q Consensus       113 p~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  192 (790)
                      |..+..+++|++|++++|.+...+   ..+..+++|++|+++++.+..... ...+..+++|++|++++|.+....+..+
T Consensus        71 ~~~~~~~~~L~~L~Ls~n~i~~l~---~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~  146 (306)
T 2z66_A           71 SQSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIF  146 (306)
T ss_dssp             EHHHHSCSCCCEEECCSCSEEEEE---EEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred             ccccccccccCEEECCCCccccCh---hhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhc
Confidence            444555666666666666544221   223445555555555554443321 0145666777777777777777766777


Q ss_pred             cCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCC
Q 047929          193 ANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE  272 (790)
Q Consensus       193 ~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  272 (790)
                      ..+++|++|++++|.+.+..+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus       147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  226 (306)
T 2z66_A          147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  226 (306)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred             ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence            77777777777777664333566667777777777777777766666777777777777777777766666677777777


Q ss_pred             EEEccCcccccccCcccccCC-CCCCEEEccCCCCCC
Q 047929          273 YLSLGYNRLQGTISSIGLENL-TFIKTLDLSFNELGQ  308 (790)
Q Consensus       273 ~L~l~~~~l~~~~~~~~l~~l-~~L~~L~l~~~~~~~  308 (790)
                      .|++++|.+.+..+.. +..+ ++|+.|++++|.+..
T Consensus       227 ~L~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          227 VLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             EEECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEEC
T ss_pred             EeECCCCCCcccCHHH-HHhhhccCCEEEccCCCeec
Confidence            7777777776554443 5555 367777777766654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=9.3e-28  Score=272.82  Aligned_cols=135  Identities=17%  Similarity=0.037  Sum_probs=57.1

Q ss_pred             CCCCCcEEeCCCCcCCccccccccC-CC-CCCEEEccCccc-ccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhc
Q 047929          243 NLTSLRYLDLSYNQFNSTISDCFSN-FD-DLEYLSLGYNRL-QGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISA  319 (790)
Q Consensus       243 ~l~~L~~L~l~~~~~~~~~~~~l~~-l~-~L~~L~l~~~~l-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  319 (790)
                      .+++|++|++++|.+.+..+..+.. ++ +|++|++++|.. ...........+++|++|++++|.+......+... ..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~  188 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LA  188 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HH
Confidence            4455666666555554443333333 22 255555555541 10000001224455555555555443322211110 12


Q ss_pred             cccCCCCEEEccCCccc----cccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECc
Q 047929          320 CAAFELESLFLRGCKIS----GQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLS  379 (790)
Q Consensus       320 ~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~  379 (790)
                      ..+++|++|++++|.+.    ..++..+..+++|++|++++|.+.+ ++..+..+++|+.|+++
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence            23445555555555443    1222233344555555555554442 33344444555555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=5.1e-25  Score=228.63  Aligned_cols=225  Identities=19%  Similarity=0.288  Sum_probs=130.3

Q ss_pred             CCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCC
Q 047929          443 QKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIP  522 (790)
Q Consensus       443 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  522 (790)
                      .+.++.|++++|.+..              +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ ..|
T Consensus        80 ~~~l~~L~L~~n~l~~--------------lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp  143 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQ--------------FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP  143 (328)
T ss_dssp             STTCCEEEEESSCCSS--------------CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCC
T ss_pred             ccceeEEEccCCCchh--------------cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCc
Confidence            3667777777776643              2333455667777777777766 56666666777777777777766 445


Q ss_pred             ccccCCCCCcEEECcCCcccccCchhhh--------hcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccC
Q 047929          523 VPFENCSQLVALDMGENEFVGNIPTWMG--------ERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSV  594 (790)
Q Consensus       523 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~--------~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~  594 (790)
                      ..+..+++|++|++++|.+.+.+|..+.        ..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+ +
T Consensus       144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l  221 (328)
T 4fcg_A          144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-L  221 (328)
T ss_dssp             GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-C
T ss_pred             HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-C
Confidence            5666677777777777666666665442        12555555555555555 444555555555555555555552 3


Q ss_pred             CcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCE
Q 047929          595 PKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQS  674 (790)
Q Consensus       595 p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  674 (790)
                      |..+..+++                                            |++|++++|.+.+.+|..++.+++|++
T Consensus       222 ~~~l~~l~~--------------------------------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          222 GPAIHHLPK--------------------------------------------LEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             CGGGGGCTT--------------------------------------------CCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             chhhccCCC--------------------------------------------CCEEECcCCcchhhhHHHhcCCCCCCE
Confidence            333332222                                            345555555555555555555555555


Q ss_pred             EeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCc
Q 047929          675 LNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNK  729 (790)
Q Consensus       675 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  729 (790)
                      |++++|.+.+.+|..+..+++|++|++++|++.+.+|+.+..+++|+.+++..+.
T Consensus       258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            5555555555555555555555555555555555555555555555555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=5.5e-25  Score=224.55  Aligned_cols=251  Identities=19%  Similarity=0.178  Sum_probs=191.8

Q ss_pred             CEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCcccc
Q 047929          447 SKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFE  526 (790)
Q Consensus       447 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~  526 (790)
                      ++++.+++.+..++              ..  ..++|+.|++++|.+++..+..|..+++|++|++++|.++++.+..|.
T Consensus        14 ~~~~c~~~~l~~ip--------------~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~   77 (285)
T 1ozn_A           14 VTTSCPQQGLQAVP--------------VG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT   77 (285)
T ss_dssp             CEEECCSSCCSSCC--------------TT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             eEEEcCcCCcccCC--------------cC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC
Confidence            56666666665432              11  236788888888888877777788888888888888888888788888


Q ss_pred             CCCCCcEEECcCCc-ccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhcccccc
Q 047929          527 NCSQLVALDMGENE-FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMA  605 (790)
Q Consensus       527 ~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~  605 (790)
                      .+++|++|++++|. +. .++...+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++  
T Consensus        78 ~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--  154 (285)
T 1ozn_A           78 GLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN--  154 (285)
T ss_dssp             TCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT--
T ss_pred             CccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC--
Confidence            88888899998887 55 443333347888999999999888777778888899999999999887555544544443  


Q ss_pred             ccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcC
Q 047929          606 TIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGK  685 (790)
Q Consensus       606 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  685 (790)
                                                                |++|++++|++.+..+..+..+++|++|++++|.+++.
T Consensus       155 ------------------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          155 ------------------------------------------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             ------------------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ------------------------------------------ccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence                                                      46888999988866666788899999999999999888


Q ss_pred             CCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcCCccCCccccCC-cccCCCC
Q 047929          686 IPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAPL  758 (790)
Q Consensus       686 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~~  758 (790)
                      .|.+|..+++|+.|++++|.+.+..+..+..+++|++|++++|++....+.......++.+....+ .-|..|.
T Consensus       193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESG
T ss_pred             CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCch
Confidence            888899999999999999999977667788999999999999998876554433344555555555 4455554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=1.7e-24  Score=223.42  Aligned_cols=249  Identities=21%  Similarity=0.237  Sum_probs=159.4

Q ss_pred             CEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEEC
Q 047929           74 NLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDT  153 (790)
Q Consensus        74 ~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l  153 (790)
                      +.++++++.++  .+|..+.  ++|++|++++|.+....+..+.++++|++|++++|.+.........+..+++|++|++
T Consensus        10 ~~l~c~~~~l~--~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT--SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc--cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            56888888888  5677554  7999999999999974444579999999999999986644333334445677777777


Q ss_pred             CCCCCCCCchhHHhhCCCCCCCEEEccCccccccCc-ccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCc
Q 047929          154 SDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAP-LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNI  232 (790)
Q Consensus       154 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~  232 (790)
                      +++.+...+.   .+..+++|++|++++|.+..... ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.
T Consensus        86 s~n~i~~l~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           86 SFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             CSCSEEEEEE---EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCE
T ss_pred             CCCccccChh---hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCc
Confidence            7766654432   45566667777776666666554 456666666666666666543 344555566666666666666


Q ss_pred             CCC-CCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcc
Q 047929          233 FRG-PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS  311 (790)
Q Consensus       233 ~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  311 (790)
                      +.+ ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +...+..+++|+.|++++|.+....+
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCCCCcccCH
Confidence            654 3555666666666666666666665566666666666666666666532 22225556666666666666555444


Q ss_pred             hhhhhhhcccc-CCCCEEEccCCccc
Q 047929          312 EILDIISACAA-FELESLFLRGCKIS  336 (790)
Q Consensus       312 ~~~~~~~~~~~-~~L~~L~l~~~~~~  336 (790)
                      .     .+..+ ++|+.|++++|.+.
T Consensus       241 ~-----~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          241 Q-----ELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             S-----SCCCCCTTCCEEECTTCCEE
T ss_pred             H-----HHHhhhccCCEEEccCCCee
Confidence            3     23333 25555555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=5.9e-25  Score=231.74  Aligned_cols=239  Identities=16%  Similarity=0.206  Sum_probs=145.5

Q ss_pred             cccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccc
Q 047929          440 LHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG  519 (790)
Q Consensus       440 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~  519 (790)
                      +..+++|++|++++|.+.++.             +..+..+++|++|++++|.+++..+..+..+++|++|++++|+++.
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIE-------------EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT  138 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEEC-------------TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS
T ss_pred             hccCCCCCEEECCCCccCccC-------------HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc
Confidence            444555555555555544322             2234455566666666666654333335556666666666666664


Q ss_pred             cCC-ccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcch
Q 047929          520 IIP-VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI  598 (790)
Q Consensus       520 ~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l  598 (790)
                      +.. ..+..+++|++|++++|.....++...+..+++|++|++++|++++..|..+..+++|++|++++|.+. .+|..+
T Consensus       139 l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~  217 (353)
T 2z80_A          139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF  217 (353)
T ss_dssp             SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHH
T ss_pred             cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhh
Confidence            443 355666666666666663222333222235666666666666666666666666677777777776654 222111


Q ss_pred             hccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCccc---ccCCCCCEE
Q 047929          599 NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV---TNLKGLQSL  675 (790)
Q Consensus       599 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L  675 (790)
                                                                 ...++.|+.|++++|.+.+..+..+   .....++.+
T Consensus       218 -------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l  254 (353)
T 2z80_A          218 -------------------------------------------VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF  254 (353)
T ss_dssp             -------------------------------------------HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred             -------------------------------------------hhhcccccEEECCCCccccccccccccccccchhhcc
Confidence                                                       1123445677777777765444333   235667777


Q ss_pred             eCCCCcCCc----CCCccccCCCCCCEEeCcCccCccccCcc-ccCCCCCCEEECcCCcccccCCC
Q 047929          676 NLSHNSFIG----KIPETIGNMRSIESLDLSGNQISGKIPQS-MSSLSFLNHLNLSDNKLVGKIPS  736 (790)
Q Consensus       676 ~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~p~  736 (790)
                      +++++.+.+    .+|+++..+++|++|++++|++.. +|.. |..+++|++|++++|++.+..|.
T Consensus       255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            777777664    356778889999999999999984 5544 58899999999999999887763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=1.3e-23  Score=229.24  Aligned_cols=247  Identities=23%  Similarity=0.256  Sum_probs=193.5

Q ss_pred             eEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCC
Q 047929          423 LALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMG  502 (790)
Q Consensus       423 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  502 (790)
                      ..++..+..+. .+|..+.  +++++|++++|.+..+.             +..+..+++|+.|++++|.+++..+..|.
T Consensus        57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~-------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  120 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQ-------------ADTFRHLHHLEVLQLGRNSIRQIEVGAFN  120 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEEC-------------TTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceEC-------------HHHcCCCCCCCEEECCCCccCCcChhhcc
Confidence            34444444443 2333332  57888888888876543             34557788888999998888877778888


Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCC-cccccCCccccCCCCCc
Q 047929          503 TLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN-KLHGIFPIQICHLSSLQ  581 (790)
Q Consensus       503 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~l~~L~  581 (790)
                      .+++|++|++++|+++.+.+..|..+++|++|++++|.+. .++...+..+++|++|++++| .+....+..+..+++|+
T Consensus       121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~  199 (452)
T 3zyi_A          121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK  199 (452)
T ss_dssp             TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred             CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence            8889999999999888877778888889999999998887 455555557888999999884 45545555688889999


Q ss_pred             EEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCC
Q 047929          582 ILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE  661 (790)
Q Consensus       582 ~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  661 (790)
                      .|++++|.+.+ +|. +..                                            ++.|++|+|++|.+.+.
T Consensus       200 ~L~L~~n~l~~-~~~-~~~--------------------------------------------l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          200 YLNLGMCNIKD-MPN-LTP--------------------------------------------LVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             EEECTTSCCSS-CCC-CTT--------------------------------------------CTTCCEEECTTSCCSEE
T ss_pred             EEECCCCcccc-ccc-ccc--------------------------------------------cccccEEECcCCcCccc
Confidence            99999998873 231 222                                            34567899999999988


Q ss_pred             CCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccc
Q 047929          662 IPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG  732 (790)
Q Consensus       662 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  732 (790)
                      .|..|..+++|++|++++|.+++..+.+|.++++|+.|++++|+++...+..+..+++|+.|++++|++..
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            88889999999999999999998888899999999999999999998777888899999999999998753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=1.4e-23  Score=228.26  Aligned_cols=246  Identities=23%  Similarity=0.266  Sum_probs=190.6

Q ss_pred             EEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCC
Q 047929          424 ALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT  503 (790)
Q Consensus       424 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  503 (790)
                      .++..+..+. .+|..+.  ++++.|++++|.+..+.+             ..+..+++|++|++++|.+.+..+..|..
T Consensus        47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~-------------~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~  110 (440)
T 3zyj_A           47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKV-------------NSFKHLRHLEILQLSRNHIRTIEIGAFNG  110 (440)
T ss_dssp             EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECT-------------TTTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred             EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCH-------------HHhhCCCCCCEEECCCCcCCccChhhccC
Confidence            4444444443 3333332  578888888888765433             44567788888888888888777777888


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCC-cccccCCccccCCCCCcE
Q 047929          504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN-KLHGIFPIQICHLSSLQI  582 (790)
Q Consensus       504 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~  582 (790)
                      +++|++|++++|+++.+.+..|..+++|++|++++|.+. .++...+..+++|++|++++| .+....+..|..+++|+.
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~  189 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY  189 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred             CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence            888888888888888777777888888888888888887 445444457888888888884 444445556888888999


Q ss_pred             EEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCC
Q 047929          583 LDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEI  662 (790)
Q Consensus       583 L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  662 (790)
                      |++++|.++ .+|. +..                                            ++.|++|+|++|.+.+..
T Consensus       190 L~L~~n~l~-~~~~-~~~--------------------------------------------l~~L~~L~Ls~N~l~~~~  223 (440)
T 3zyj_A          190 LNLAMCNLR-EIPN-LTP--------------------------------------------LIKLDELDLSGNHLSAIR  223 (440)
T ss_dssp             EECTTSCCS-SCCC-CTT--------------------------------------------CSSCCEEECTTSCCCEEC
T ss_pred             ecCCCCcCc-cccc-cCC--------------------------------------------CcccCEEECCCCccCccC
Confidence            999988876 3332 222                                            345678999999998878


Q ss_pred             CcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccc
Q 047929          663 PMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG  732 (790)
Q Consensus       663 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  732 (790)
                      |..|..+++|++|++++|.+++..+.+|.++++|++|++++|+++...+..+..+++|+.|++++|++..
T Consensus       224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            8889999999999999999998888899999999999999999998778888999999999999998753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=7.8e-24  Score=215.96  Aligned_cols=225  Identities=22%  Similarity=0.193  Sum_probs=152.1

Q ss_pred             EEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcC
Q 047929           50 LELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG  129 (790)
Q Consensus        50 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~  129 (790)
                      ++++.++.+++ .+|..+  .++|++|++++|.+.+. .++.+..+++|++|++++|.+++..|.++..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            56777777776 445433  46899999999998854 456788899999999999998887788889999999999988


Q ss_pred             Cc-ccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCC
Q 047929          130 SY-YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLF  208 (790)
Q Consensus       130 ~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l  208 (790)
                      |. +.....  .                          .+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus        90 n~~l~~~~~--~--------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  141 (285)
T 1ozn_A           90 NAQLRSVDP--A--------------------------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL  141 (285)
T ss_dssp             CTTCCCCCT--T--------------------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCccccCH--H--------------------------HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc
Confidence            85 332211  1                          345566666666666666666666666666777777777666


Q ss_pred             CCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcc
Q 047929          209 GKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI  288 (790)
Q Consensus       209 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~  288 (790)
                      .. ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ++..
T Consensus       142 ~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~  219 (285)
T 1ozn_A          142 QA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTE  219 (285)
T ss_dssp             CC-CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHH
T ss_pred             cc-cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHH
Confidence            43 223335566667777777776665555556666777777777777666666666666777777777776663 3333


Q ss_pred             cccCCCCCCEEEccCCCCCC
Q 047929          289 GLENLTFIKTLDLSFNELGQ  308 (790)
Q Consensus       289 ~l~~l~~L~~L~l~~~~~~~  308 (790)
                      .+..+++|+.|++++|.+..
T Consensus       220 ~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          220 ALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             HHTTCTTCCEEECCSSCEEC
T ss_pred             HcccCcccCEEeccCCCccC
Confidence            36666666666666666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=3.1e-23  Score=225.48  Aligned_cols=248  Identities=24%  Similarity=0.292  Sum_probs=210.9

Q ss_pred             CCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCcc
Q 047929          445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVP  524 (790)
Q Consensus       445 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  524 (790)
                      ..+.++.++..+..++              ..+  .++++.|++++|.+.+..+..|..+++|++|++++|.+..+.+..
T Consensus        44 ~~~~v~c~~~~l~~iP--------------~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~  107 (440)
T 3zyj_A           44 QFSKVICVRKNLREVP--------------DGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA  107 (440)
T ss_dssp             TSCEEECCSCCCSSCC--------------SCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG
T ss_pred             CCCEEEeCCCCcCcCC--------------CCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh
Confidence            4567888887776543              222  268999999999999888889999999999999999999988899


Q ss_pred             ccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCc-chhcccc
Q 047929          525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK-CINNFTA  603 (790)
Q Consensus       525 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~  603 (790)
                      |.++++|++|++++|.+. .++...+..+++|++|++++|++....+..|..+++|+.|++++|...+.++. .+.++  
T Consensus       108 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l--  184 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL--  184 (440)
T ss_dssp             GTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC--
T ss_pred             ccCCccCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc--
Confidence            999999999999999998 55555456899999999999999988888899999999999999665444443 34433  


Q ss_pred             ccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCC
Q 047929          604 MATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFI  683 (790)
Q Consensus       604 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  683 (790)
                                                                +.|++|++++|++. .+| .+..+++|++|+|++|.++
T Consensus       185 ------------------------------------------~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          185 ------------------------------------------SNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             ------------------------------------------SSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred             ------------------------------------------cccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence                                                      34679999999998 555 4789999999999999999


Q ss_pred             cCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCC-CcCCccCCccccCCcc-cC
Q 047929          684 GKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDL-CG  755 (790)
Q Consensus       684 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l-~~  755 (790)
                      +..|..|.++++|+.|++++|++....+..|..+++|++|++++|++.+..+.. ..+.+|+.+++.+|++ |.
T Consensus       221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            988999999999999999999999999999999999999999999999766654 4578899999999954 53

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=3.3e-23  Score=226.11  Aligned_cols=246  Identities=24%  Similarity=0.283  Sum_probs=209.7

Q ss_pred             CCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCcc
Q 047929          445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVP  524 (790)
Q Consensus       445 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  524 (790)
                      ....++.++..+..+              |..+  .++++.|++++|.+++..+..|..+++|+.|++++|.++++.+..
T Consensus        55 ~~~~v~c~~~~l~~i--------------P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~  118 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEV--------------PQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA  118 (452)
T ss_dssp             SSCEEECCSSCCSSC--------------CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             CCcEEEECCCCcCcc--------------CCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh
Confidence            456778777776654              2222  268999999999999888889999999999999999999999999


Q ss_pred             ccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCc-chhcccc
Q 047929          525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK-CINNFTA  603 (790)
Q Consensus       525 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~  603 (790)
                      |.++++|++|++++|.+. .+|...+..+++|++|++++|+++...+..|..+++|+.|++++|...+.++. .+.++  
T Consensus       119 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l--  195 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL--  195 (452)
T ss_dssp             TTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC--
T ss_pred             ccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC--
Confidence            999999999999999998 55555556899999999999999988888899999999999999665444443 34333  


Q ss_pred             ccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCC
Q 047929          604 MATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFI  683 (790)
Q Consensus       604 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  683 (790)
                                                                +.|++|++++|++.+ +| .+..+++|++|++++|.++
T Consensus       196 ------------------------------------------~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          196 ------------------------------------------FNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             ------------------------------------------TTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS
T ss_pred             ------------------------------------------CCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc
Confidence                                                      446799999999985 44 4788999999999999999


Q ss_pred             cCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCC-CcCCccCCccccCCcc
Q 047929          684 GKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDL  753 (790)
Q Consensus       684 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l  753 (790)
                      +..|..|.++++|+.|++++|++.+..|..|..+++|+.|++++|++.+..+.. ..+.+|+.+++.+|++
T Consensus       232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            999999999999999999999999999999999999999999999998655554 3578899999999954

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=4.1e-25  Score=228.76  Aligned_cols=267  Identities=21%  Similarity=0.236  Sum_probs=161.7

Q ss_pred             CCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecC
Q 047929          325 LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYAN  404 (790)
Q Consensus       325 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~  404 (790)
                      ++..+++.+.+.......+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..+                
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------------   75 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----------------   75 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----------------
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----------------
Confidence            3444555555544444445556678888888888876666677777778888877776643221                


Q ss_pred             CCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCc
Q 047929          405 GNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLR  484 (790)
Q Consensus       405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~  484 (790)
                                                         +..+++|++|++++|.+.++.                  ..++|+
T Consensus        76 -----------------------------------~~~l~~L~~L~Ls~n~l~~l~------------------~~~~L~  102 (317)
T 3o53_A           76 -----------------------------------LESLSTLRTLDLNNNYVQELL------------------VGPSIE  102 (317)
T ss_dssp             -----------------------------------ETTCTTCCEEECCSSEEEEEE------------------ECTTCC
T ss_pred             -----------------------------------hhhcCCCCEEECcCCcccccc------------------CCCCcC
Confidence                                               233455555555555544321                  125666


Q ss_pred             EEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCC
Q 047929          485 VLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN  564 (790)
Q Consensus       485 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n  564 (790)
                      +|++++|.+++..+.   .+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+...+++|++|++++|
T Consensus       103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            666666666644332   24566777777776666655566666666666666666654444444334555666666666


Q ss_pred             cccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhc
Q 047929          565 KLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSI  644 (790)
Q Consensus       565 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (790)
                      ++++..+  ...+++|++|++                                                           
T Consensus       180 ~l~~~~~--~~~l~~L~~L~L-----------------------------------------------------------  198 (317)
T 3o53_A          180 FIYDVKG--QVVFAKLKTLDL-----------------------------------------------------------  198 (317)
T ss_dssp             CCCEEEC--CCCCTTCCEEEC-----------------------------------------------------------
T ss_pred             cCccccc--ccccccCCEEEC-----------------------------------------------------------
Confidence            5554311  122444444444                                                           


Q ss_pred             ccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCc-cccCccccCCCCCCEE
Q 047929          645 LNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS-GKIPQSMSSLSFLNHL  723 (790)
Q Consensus       645 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L  723 (790)
                               ++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++. +.+|..+..+++|+.+
T Consensus       199 ---------s~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          199 ---------SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             ---------CSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred             ---------CCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence                     444444 23344666777888888888777 45667777888888888888887 6677777788888888


Q ss_pred             ECcCCc-ccccCC
Q 047929          724 NLSDNK-LVGKIP  735 (790)
Q Consensus       724 ~l~~n~-l~~~~p  735 (790)
                      ++++|+ +.+..|
T Consensus       268 ~l~~~~~l~~~~~  280 (317)
T 3o53_A          268 AKQTVKKLTGQNE  280 (317)
T ss_dssp             HHHHHHHHHSSSS
T ss_pred             ECCCchhccCCch
Confidence            887443 344333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=3e-25  Score=229.85  Aligned_cols=257  Identities=19%  Similarity=0.239  Sum_probs=197.5

Q ss_pred             cccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcc
Q 047929          438 SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRL  517 (790)
Q Consensus       438 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i  517 (790)
                      ..+..+++|++|++++|.+.++.+.             .+..+++|+.|++++|.+++..+  +..+++|++|++++|++
T Consensus        28 ~~~~~~~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l   92 (317)
T 3o53_A           28 SLRQSAWNVKELDLSGNPLSQISAA-------------DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV   92 (317)
T ss_dssp             HHHTTGGGCSEEECTTSCCCCCCHH-------------HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred             HHhccCCCCCEEECcCCccCcCCHH-------------HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence            3345567888888888887765432             34677888888888888876544  77888899999998888


Q ss_pred             cccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcc
Q 047929          518 SGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKC  597 (790)
Q Consensus       518 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~  597 (790)
                      ++..     ..++|++|++++|.+.+..+.    .+++|++|++++|++++..+..+..+++|+.|++++|.+.+..|..
T Consensus        93 ~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           93 QELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             EEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             cccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            7543     347889999999888754332    4678999999999998877778888899999999999888655443


Q ss_pred             hhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeC
Q 047929          598 INNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNL  677 (790)
Q Consensus       598 l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  677 (790)
                      +.                                           ..++.|++|++++|.+.+. +. ...+++|++|++
T Consensus       164 ~~-------------------------------------------~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~L  198 (317)
T 3o53_A          164 LA-------------------------------------------ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDL  198 (317)
T ss_dssp             GG-------------------------------------------GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEEC
T ss_pred             Hh-------------------------------------------hccCcCCEEECCCCcCccc-cc-ccccccCCEEEC
Confidence            32                                           1134467899999999854 32 345899999999


Q ss_pred             CCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCccc-ccCCCC-CcCCccCCccccCC-ccc
Q 047929          678 SHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLV-GKIPSS-TQLQSFGASSITGN-DLC  754 (790)
Q Consensus       678 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~-~~~~sl~~l~~~~n-~l~  754 (790)
                      ++|.+++ +|..+..+++|++|++++|++. .+|..+..+++|+.|++++|++. +.+|.. ..+..|+.+.+.++ .+.
T Consensus       199 s~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          199 SSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             CSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            9999985 4555899999999999999999 57888999999999999999998 555544 44677888888876 777


Q ss_pred             CCCCCCCCccc
Q 047929          755 GAPLSNCTEKN  765 (790)
Q Consensus       755 ~~~~~~c~~~~  765 (790)
                      +.....|....
T Consensus       277 ~~~~~~~~~~~  287 (317)
T 3o53_A          277 GQNEEECTVPT  287 (317)
T ss_dssp             SSSSCCCSSTT
T ss_pred             CCchhccCCCc
Confidence            76666665443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=3.3e-23  Score=231.10  Aligned_cols=284  Identities=25%  Similarity=0.249  Sum_probs=186.9

Q ss_pred             CCCCCCCCCCcccCceee--c----CCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCC
Q 047929           25 LASWIGDVDCCEWGGVVC--N----NITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNL   98 (790)
Q Consensus        25 ~~~w~~~~~~~~~~~~~c--~----~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L   98 (790)
                      .+.|...+++|.|.+..+  .    -....+++|+++++.++ .+|..+.  ++|++|++++|.+.  .+|.   .+++|
T Consensus        12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~--~lp~---~l~~L   83 (622)
T 3g06_A           12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT--SLPA---LPPEL   83 (622)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS--CCCC---CCTTC
T ss_pred             HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC--CCCC---cCCCC
Confidence            345655578899966432  1    01346899999999987 6776665  79999999999988  4666   57899


Q ss_pred             CEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEE
Q 047929           99 RYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLK  178 (790)
Q Consensus        99 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  178 (790)
                      ++|++++|++++ +|.   .+++|++|++++|.+...+.      .+++|++|+++                        
T Consensus        84 ~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~------~l~~L~~L~L~------------------------  129 (622)
T 3g06_A           84 RTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA------LPSGLCKLWIF------------------------  129 (622)
T ss_dssp             CEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC------CCTTCCEEECC------------------------
T ss_pred             CEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC------CCCCcCEEECC------------------------
Confidence            999999999886 666   67889999999887554322      33444555555                        


Q ss_pred             ccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCC
Q 047929          179 LFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFN  258 (790)
Q Consensus       179 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~  258 (790)
                        +|.+..++..    +++|++|++++|.+..  +|.   .+.+|+.|++++|.+.+ +|   ..+++|+.|++++|.+.
T Consensus       130 --~N~l~~lp~~----l~~L~~L~Ls~N~l~~--l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          130 --GNQLTSLPVL----PPGLQELSVSDNQLAS--LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA  194 (622)
T ss_dssp             --SSCCSCCCCC----CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred             --CCCCCcCCCC----CCCCCEEECcCCcCCC--cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC
Confidence              4444443321    2556666666665532  333   23456666666666653 33   33456666666666665


Q ss_pred             ccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccc
Q 047929          259 STISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQ  338 (790)
Q Consensus       259 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  338 (790)
                      +. +.   .+++|+.|++++|.+. .++.    .+++|+.|++++|.+...+         ..+++|+.|++++|.++. 
T Consensus       195 ~l-~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~lp---------~~l~~L~~L~Ls~N~L~~-  255 (622)
T 3g06_A          195 SL-PT---LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTSLP---------VLPSELKELMVSGNRLTS-  255 (622)
T ss_dssp             CC-CC---CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSC-
T ss_pred             CC-CC---ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCcCC---------CCCCcCcEEECCCCCCCc-
Confidence            42 22   2356666666666665 3332    2356777777777665432         234577888888887774 


Q ss_pred             cchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCC
Q 047929          339 LTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMIS  388 (790)
Q Consensus       339 ~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  388 (790)
                      +|.   .+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+
T Consensus       256 lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            343   5678999999999888 667888889999999999998876543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.8e-22  Score=203.69  Aligned_cols=215  Identities=22%  Similarity=0.283  Sum_probs=138.1

Q ss_pred             CCCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCccccc
Q 047929           32 VDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGW  111 (790)
Q Consensus        32 ~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~  111 (790)
                      .++|.|.|+.|.- .+.++.++++++.++ .+|..+.  +++++|++++|.+... .+..|.++++|++|++++|.++..
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i   76 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTL   76 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCee
Confidence            5789999998852 345678899988887 4565444  6788899998888855 455788888999999988888874


Q ss_pred             CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCccc
Q 047929          112 IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLA  191 (790)
Q Consensus       112 lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  191 (790)
                      .+..+..+++|++|++++|.+...+..                            .+..+++|++|++++|.+..+++..
T Consensus        77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------------~~~~l~~L~~L~l~~n~l~~~~~~~  128 (270)
T 2o6q_A           77 PAGIFKELKNLETLWVTDNKLQALPIG----------------------------VFDQLVNLAELRLDRNQLKSLPPRV  128 (270)
T ss_dssp             CTTTTSSCTTCCEEECCSSCCCCCCTT----------------------------TTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred             ChhhhcCCCCCCEEECCCCcCCcCCHh----------------------------HcccccCCCEEECCCCccCeeCHHH
Confidence            445567888888888887754322210                            3445556666666666666665556


Q ss_pred             CcCCCCCCEEECCCCCCCCCCcch-hccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCC
Q 047929          192 SANFSSLNALDLSGNLFGKTSIPS-WVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD  270 (790)
Q Consensus       192 l~~l~~L~~L~L~~~~l~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  270 (790)
                      +..+++|++|++++|.+..  +|. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQS--LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK  206 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             hCcCcCCCEEECCCCcCCc--cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence            6666666666666666533  232 2445566666666666555544444555566666666666555544444555555


Q ss_pred             CCEEEccCccc
Q 047929          271 LEYLSLGYNRL  281 (790)
Q Consensus       271 L~~L~l~~~~l  281 (790)
                      |+.|++++|++
T Consensus       207 L~~L~l~~N~~  217 (270)
T 2o6q_A          207 LKMLQLQENPW  217 (270)
T ss_dssp             CCEEECCSSCB
T ss_pred             CCEEEecCCCe
Confidence            55555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=1.6e-26  Score=262.90  Aligned_cols=89  Identities=15%  Similarity=0.076  Sum_probs=45.2

Q ss_pred             CCCCCCCEEEccCCcccccCCccccC-CCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCc-cccCCCC
Q 047929          502 GTLTSLRSLNLRSNRLSGIIPVPFEN-CSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPI-QICHLSS  579 (790)
Q Consensus       502 ~~l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~  579 (790)
                      ..+++|++|++++ .+++.....+.. +++|+.|++++|.+++..+..+...+++|++|++++|++++.... .+..+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3445566666654 333332222322 556666666666555444444434456666666666665432221 2233556


Q ss_pred             CcEEEccCCccc
Q 047929          580 LQILDVAYNRLS  591 (790)
Q Consensus       580 L~~L~ls~n~l~  591 (790)
                      |+.|++++|+++
T Consensus       508 L~~L~l~~~~~~  519 (594)
T 2p1m_B          508 MRSLWMSSCSVS  519 (594)
T ss_dssp             SSEEEEESSCCB
T ss_pred             CCEEeeeCCCCC
Confidence            666666666553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.89  E-value=2.8e-26  Score=260.82  Aligned_cols=236  Identities=15%  Similarity=0.123  Sum_probs=122.1

Q ss_pred             ccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCccccc-CCcCCCCCCCCCEEEccC---
Q 047929          439 WLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGS-IPISMGTLTSLRSLNLRS---  514 (790)
Q Consensus       439 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~---  514 (790)
                      .+..+++|++|++++|.+.+..            +...+..+++|+.|++++| +.+. ++.....+++|++|++.+   
T Consensus       284 ~~~~~~~L~~L~L~~~~l~~~~------------l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~  350 (594)
T 2p1m_B          284 VYSVCSRLTTLNLSYATVQSYD------------LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEP  350 (594)
T ss_dssp             GHHHHTTCCEEECTTCCCCHHH------------HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCT
T ss_pred             HHHhhCCCCEEEccCCCCCHHH------------HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcc
Confidence            3445667777777777643211            1112345667777777776 3321 111122366777777733   


Q ss_pred             ------CcccccCCccc-cCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcC--C----Cccccc-----CCccccC
Q 047929          515 ------NRLSGIIPVPF-ENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLR--S----NKLHGI-----FPIQICH  576 (790)
Q Consensus       515 ------n~i~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~--~----n~~~~~-----~~~~~~~  576 (790)
                            +.++......+ ..+++|+.|.+..|.+++..+..+...+++|+.|+++  +    +.+++.     ++..+..
T Consensus       351 ~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~  430 (594)
T 2p1m_B          351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH  430 (594)
T ss_dssp             TCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence                  23332221122 2366777776666666655555554456777777776  2    333311     1111445


Q ss_pred             CCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCc
Q 047929          577 LSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMN  656 (790)
Q Consensus       577 l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n  656 (790)
                      +++|+.|++++ .+++..+..+.                                           ..++.|+.|+|++|
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~-------------------------------------------~~~~~L~~L~L~~~  466 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIG-------------------------------------------TYAKKMEMLSVAFA  466 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHH-------------------------------------------HHCTTCCEEEEESC
T ss_pred             CCCccEEeecC-cccHHHHHHHH-------------------------------------------HhchhccEeeccCC
Confidence            66677777755 33322111111                                           11344567777777


Q ss_pred             cCCCCCCccc-ccCCCCCEEeCCCCcCCcCCCc-cccCCCCCCEEeCcCccCccccCccc-cCCCCCCEEECcCCccc
Q 047929          657 NFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQISGKIPQSM-SSLSFLNHLNLSDNKLV  731 (790)
Q Consensus       657 ~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~  731 (790)
                      .+++..+..+ ..+++|++|++++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+..+...
T Consensus       467 ~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred             CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence            7654333333 4567777777777777543322 23446777777777777643322233 34555655555555433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=1.5e-24  Score=223.90  Aligned_cols=206  Identities=21%  Similarity=0.268  Sum_probs=110.7

Q ss_pred             CCCCCcEEEccCCcccccCCcCC--CCCCCCCEEEccCCcccccCCccccCC-----CCCcEEECcCCcccccCchhhhh
Q 047929          479 NWPDLRVLNLGNNKFTGSIPISM--GTLTSLRSLNLRSNRLSGIIPVPFENC-----SQLVALDMGENEFVGNIPTWMGE  551 (790)
Q Consensus       479 ~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~  551 (790)
                      .+++|++|++++|.+++..|..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|.+.+..|..+ .
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-R  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-C
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-c
Confidence            35566666666666665555543  5566666666666666655 4444444     566666666666553333333 2


Q ss_pred             cCCCCcEEEcCCCccccc--CCccc--cCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeeccccccccee
Q 047929          552 RFSRLRILNLRSNKLHGI--FPIQI--CHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIV  627 (790)
Q Consensus       552 ~~~~L~~L~L~~n~~~~~--~~~~~--~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  627 (790)
                      .+++|++|++++|++.+.  .+..+  ..+++|++|++++|.+.+. +...                             
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~-----------------------------  220 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SGVC-----------------------------  220 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HHHH-----------------------------
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HHHH-----------------------------
Confidence            455666666666655432  11122  4556666666666655411 0000                             


Q ss_pred             eeeeeeeccchhhhhhcccceeEEEccCccCCCCCC-cccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccC
Q 047929          628 EEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIP-MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQI  706 (790)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  706 (790)
                                 ......++.|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++
T Consensus       221 -----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          221 -----------SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             -----------HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC
T ss_pred             -----------HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC
Confidence                       0000112344566666666665443 33445566666666666665 5555544  5666666666666


Q ss_pred             ccccCccccCCCCCCEEECcCCcccc
Q 047929          707 SGKIPQSMSSLSFLNHLNLSDNKLVG  732 (790)
Q Consensus       707 ~~~~p~~l~~l~~L~~L~l~~n~l~~  732 (790)
                      ++. |. +..+++|++|++++|++.+
T Consensus       287 ~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          287 DRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            643 44 6666666666666666553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=2.4e-24  Score=222.44  Aligned_cols=252  Identities=20%  Similarity=0.270  Sum_probs=199.3

Q ss_pred             cccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCccc-ccCCcCCC-------CCCCCCEEE
Q 047929          440 LHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT-GSIPISMG-------TLTSLRSLN  511 (790)
Q Consensus       440 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~  511 (790)
                      +...++|+++++++|.+ .+ |..+             .  ..|+.|++++|.+. ..++..+.       .+++|++|+
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~-p~~~-------------~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~  101 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-AD-LGQF-------------T--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT  101 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CC-CHHH-------------H--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEE
T ss_pred             EccCCCceeEeeccccc-cc-HHHH-------------H--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEE
Confidence            44567788888888887 32 2211             1  12788888888884 33444443       689999999


Q ss_pred             ccCCcccccCCccc--cCCCCCcEEECcCCcccccCchhhhhcC-----CCCcEEEcCCCcccccCCccccCCCCCcEEE
Q 047929          512 LRSNRLSGIIPVPF--ENCSQLVALDMGENEFVGNIPTWMGERF-----SRLRILNLRSNKLHGIFPIQICHLSSLQILD  584 (790)
Q Consensus       512 L~~n~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  584 (790)
                      +++|++++..|..+  ..+++|++|++++|.+.+. |..+. .+     ++|++|++++|++.+..+..+..+++|++|+
T Consensus       102 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  179 (312)
T 1wwl_A          102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD  179 (312)
T ss_dssp             EEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE
T ss_pred             ccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE
Confidence            99999998888765  8999999999999999866 76654 44     8999999999999988889999999999999


Q ss_pred             ccCCcccccC--CcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC--
Q 047929          585 VAYNRLSGSV--PKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG--  660 (790)
Q Consensus       585 ls~n~l~~~~--p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--  660 (790)
                      +++|.+.+.+  |..+                                          ....++.|++|++++|.+.+  
T Consensus       180 Ls~N~l~~~~~~~~~~------------------------------------------~~~~l~~L~~L~L~~N~l~~~~  217 (312)
T 1wwl_A          180 LSDNPELGERGLISAL------------------------------------------CPLKFPTLQVLALRNAGMETPS  217 (312)
T ss_dssp             CCSCTTCHHHHHHHHS------------------------------------------CTTSCTTCCEEECTTSCCCCHH
T ss_pred             CCCCCcCcchHHHHHH------------------------------------------HhccCCCCCEEECCCCcCcchH
Confidence            9999976542  2111                                          00123456799999999983  


Q ss_pred             CCC-cccccCCCCCEEeCCCCcCCcCCC-ccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCC
Q 047929          661 EIP-MEVTNLKGLQSLNLSHNSFIGKIP-ETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSST  738 (790)
Q Consensus       661 ~~~-~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~  738 (790)
                      .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+.  ++|++|++++|++.+. |...
T Consensus       218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~  293 (312)
T 1wwl_A          218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPD  293 (312)
T ss_dssp             HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTT
T ss_pred             HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHh
Confidence            122 334678999999999999998764 45677899999999999999 6787776  8999999999999876 7777


Q ss_pred             cCCccCCccccCCcccCC
Q 047929          739 QLQSFGASSITGNDLCGA  756 (790)
Q Consensus       739 ~~~sl~~l~~~~n~l~~~  756 (790)
                      .+.+|+.+++.+|++.+.
T Consensus       294 ~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          294 ELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             TSCEEEEEECTTCTTTCC
T ss_pred             hCCCCCEEeccCCCCCCC
Confidence            789999999999988754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=6.1e-21  Score=212.90  Aligned_cols=263  Identities=23%  Similarity=0.246  Sum_probs=210.8

Q ss_pred             CCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcE
Q 047929           71 KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEH  150 (790)
Q Consensus        71 ~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~  150 (790)
                      ..+++|+++++.+.  .+|..+.  ++|++|++++|.++. +|.   .+++|++|++++|.+...+.             
T Consensus        40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~-------------   98 (622)
T 3g06_A           40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV-------------   98 (622)
T ss_dssp             HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC-------------
T ss_pred             CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC-------------
Confidence            46899999999998  5787665  899999999999886 666   57889999998886542111             


Q ss_pred             EECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccC
Q 047929          151 LDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS  230 (790)
Q Consensus       151 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~  230 (790)
                                         .+++|++|++++|.+..++.    .+++|+.|++++|.++  .+|..   +++|++|++++
T Consensus        99 -------------------~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~--~lp~~---l~~L~~L~Ls~  150 (622)
T 3g06_A           99 -------------------LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT--SLPVL---PPGLQELSVSD  150 (622)
T ss_dssp             -------------------CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCS--CCCCC---CTTCCEEECCS
T ss_pred             -------------------CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCC--cCCCC---CCCCCEEECcC
Confidence                               45778888888888877655    5689999999999985  46764   48999999999


Q ss_pred             CcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCc
Q 047929          231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDI  310 (790)
Q Consensus       231 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  310 (790)
                      |.+.+ +|.   .+++|+.|++++|.+... |   ..+++|+.|++++|.+.+ ++.    .+++|+.|++++|.+...+
T Consensus       151 N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l~  217 (622)
T 3g06_A          151 NQLAS-LPA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTSLP  217 (622)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSCC
T ss_pred             CcCCC-cCC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccccC
Confidence            99985 454   357899999999999874 3   457899999999999874 443    3488999999999987543


Q ss_pred             chhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChh
Q 047929          311 SEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEI  390 (790)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  390 (790)
                      .         .+++|+.|++++|.+++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.++.. +. 
T Consensus       218 ~---------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~l-p~-  278 (622)
T 3g06_A          218 A---------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRL-PE-  278 (622)
T ss_dssp             C---------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSC-CG-
T ss_pred             C---------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcC-CH-
Confidence            2         24789999999999986 44   45689999999999998 4554   678999999999999855 33 


Q ss_pred             hhccccccceeecCCCcceeecCC
Q 047929          391 HFGNLTELAFFYANGNSVNFKINS  414 (790)
Q Consensus       391 ~~~~l~~L~~l~l~~~~~~~~~~~  414 (790)
                      .+..+++|+.+++.+|.+....+.
T Consensus       279 ~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          279 SLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             GGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             HHhhccccCEEEecCCCCCCcCHH
Confidence            588999999999999988765443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=6e-22  Score=200.91  Aligned_cols=211  Identities=22%  Similarity=0.221  Sum_probs=158.3

Q ss_pred             CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929          481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN  560 (790)
Q Consensus       481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  560 (790)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+..+.+..|..+++|++|++++|.+.+..+..+ ..+++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh-cCCccccEEE
Confidence            467777777777776666667777788888888887777777777777888888888887775444444 3677888888


Q ss_pred             cCCCcccccCCccccCCCCCcEEEccCCccccc-CCcchhccccccccCCccccceeecccccccceeeeeeeeeccchh
Q 047929          561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGS-VPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMV  639 (790)
Q Consensus       561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  639 (790)
                      +++|++.+..+..+..+++|++|++++|.+.+. +|..+.++++                                    
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~------------------------------------  150 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN------------------------------------  150 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT------------------------------------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC------------------------------------
Confidence            888887766666677888888888888887653 4655554443                                    


Q ss_pred             hhhhcccceeEEEccCccCCCCCCcccccCCCCC----EEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCcccc
Q 047929          640 EYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQ----SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS  715 (790)
Q Consensus       640 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~  715 (790)
                              |++|++++|++.+..+..+..+++|+    +|++++|.+++..+..+. ..+|++|++++|++.+..+..+.
T Consensus       151 --------L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~  221 (276)
T 2z62_A          151 --------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFD  221 (276)
T ss_dssp             --------CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTT
T ss_pred             --------CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhc
Confidence                    45788888888766666666666666    889999998866555554 44899999999999977777788


Q ss_pred             CCCCCCEEECcCCcccccCCCC
Q 047929          716 SLSFLNHLNLSDNKLVGKIPSS  737 (790)
Q Consensus       716 ~l~~L~~L~l~~n~l~~~~p~~  737 (790)
                      .+++|++|++++|++.+..|..
T Consensus       222 ~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          222 RLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             TCCSCCEEECCSSCBCCCTTTT
T ss_pred             ccccccEEEccCCcccccCCch
Confidence            9999999999999999877654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=5e-23  Score=225.55  Aligned_cols=234  Identities=18%  Similarity=0.229  Sum_probs=151.1

Q ss_pred             CCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCc
Q 047929          444 KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPV  523 (790)
Q Consensus       444 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  523 (790)
                      ++|++|++++|.+.++.+             ..+..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+ 
T Consensus        34 ~~L~~L~Ls~n~l~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-   97 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISA-------------ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-   97 (487)
T ss_dssp             GGCCEEECCSSCCCCCCG-------------GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred             CCccEEEeeCCcCCCCCH-------------HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence            456666666666654332             234556667777777776665443  6666777777777777664332 


Q ss_pred             cccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchh-ccc
Q 047929          524 PFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCIN-NFT  602 (790)
Q Consensus       524 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~-~l~  602 (790)
                          .++|+.|++++|.+.+..+.    .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+ 
T Consensus        98 ----~~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l-  168 (487)
T 3oja_A           98 ----GPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS-  168 (487)
T ss_dssp             ----CTTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT-
T ss_pred             ----CCCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC-
Confidence                26777777777776643332    356777777777777776666677777777777777777765554432 22 


Q ss_pred             cccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcC
Q 047929          603 AMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSF  682 (790)
Q Consensus       603 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  682 (790)
                                                                 +.|+.|+|++|.+++..+  ...+++|++|++++|.+
T Consensus       169 -------------------------------------------~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          169 -------------------------------------------DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKL  203 (487)
T ss_dssp             -------------------------------------------TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCC
T ss_pred             -------------------------------------------CcccEEecCCCccccccc--cccCCCCCEEECCCCCC
Confidence                                                       234577777777765422  33577888888888887


Q ss_pred             CcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCccc-ccCCCC-CcCCccCCcccc
Q 047929          683 IGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLV-GKIPSS-TQLQSFGASSIT  749 (790)
Q Consensus       683 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~-~~~~sl~~l~~~  749 (790)
                      ++. |..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|.. ..+..++.+.+.
T Consensus       204 ~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          204 AFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            754 3447777888888888888874 6667777788888888888877 444432 334445555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.8e-21  Score=196.36  Aligned_cols=206  Identities=21%  Similarity=0.299  Sum_probs=146.3

Q ss_pred             CCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEc
Q 047929          482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNL  561 (790)
Q Consensus       482 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L  561 (790)
                      ..+.++++++.++ .+|..+.  +++++|++++|+++.+.+..|..+++|++|++++|.+. .++..++..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence            3455666666655 3443332  45666666666666655556666666666666666665 445444445667777777


Q ss_pred             CCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhh
Q 047929          562 RSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEY  641 (790)
Q Consensus       562 ~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (790)
                      ++|++++..+..+..+++|++|++++|.+++..+..+..+++                                      
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--------------------------------------  134 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK--------------------------------------  134 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT--------------------------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC--------------------------------------
Confidence            777776655556677777777777777776555544444333                                      


Q ss_pred             hhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCC
Q 047929          642 NSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLN  721 (790)
Q Consensus       642 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~  721 (790)
                            |++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++.+..+..+..+++|+
T Consensus       135 ------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          135 ------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             ------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence                  45777788877755555678899999999999999877777789999999999999999977777788999999


Q ss_pred             EEECcCCcccccCC
Q 047929          722 HLNLSDNKLVGKIP  735 (790)
Q Consensus       722 ~L~l~~n~l~~~~p  735 (790)
                      .|++++|++....+
T Consensus       209 ~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          209 MLQLQENPWDCTCN  222 (270)
T ss_dssp             EEECCSSCBCCSSS
T ss_pred             EEEecCCCeeCCCc
Confidence            99999999876554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=6e-22  Score=216.96  Aligned_cols=218  Identities=20%  Similarity=0.183  Sum_probs=185.9

Q ss_pred             CCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcE
Q 047929          479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRI  558 (790)
Q Consensus       479 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  558 (790)
                      .+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|++++|.+.+ +|     ..++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-----~~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL-----VGPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE-----ECTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC-----CCCCcCE
Confidence            45689999999999998778889999999999999999987665  8999999999999999874 33     2489999


Q ss_pred             EEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccch
Q 047929          559 LNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFM  638 (790)
Q Consensus       559 L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  638 (790)
                      |++++|.+++..+.   .+++|+.|++++|.+++..|..+.++++                                   
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------------------------------  145 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-----------------------------------  145 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSS-----------------------------------
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCC-----------------------------------
Confidence            99999999876554   4689999999999999777766655444                                   


Q ss_pred             hhhhhcccceeEEEccCccCCCCCCcccc-cCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCC
Q 047929          639 VEYNSILNLVRSIDISMNNFSGEIPMEVT-NLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSL  717 (790)
Q Consensus       639 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l  717 (790)
                               |+.|+|++|.+++..|..+. .+++|++|+|++|.+++. | .+..+++|+.|++++|.+++. |..+..+
T Consensus       146 ---------L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  213 (487)
T 3oja_A          146 ---------VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSA  213 (487)
T ss_dssp             ---------EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGG
T ss_pred             ---------CCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCC
Confidence                     56899999999988888775 799999999999999866 3 345689999999999999964 5559999


Q ss_pred             CCCCEEECcCCcccccCCCCCcCCccCCccccCCccc
Q 047929          718 SFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLC  754 (790)
Q Consensus       718 ~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n~l~  754 (790)
                      ++|+.|++++|++.+.++..+.+.+|+.+++.+|.+.
T Consensus       214 ~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            9999999999999975555566889999999999554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=5e-21  Score=194.13  Aligned_cols=215  Identities=25%  Similarity=0.259  Sum_probs=149.2

Q ss_pred             cccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccc
Q 047929           62 KINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISW  141 (790)
Q Consensus        62 ~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~  141 (790)
                      .+|..+.  ++|++|++++|.+.+. .+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.....    
T Consensus        21 ~ip~~l~--~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----   93 (276)
T 2z62_A           21 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL----   93 (276)
T ss_dssp             SCCSSSC--TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT----
T ss_pred             ccCCCCC--CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh----
Confidence            3444443  4688888888887754 34467788888888888888877666677888888888888776432221    


Q ss_pred             cCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCC
Q 047929          142 LAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLS  221 (790)
Q Consensus       142 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~  221 (790)
                                              ..+.++++|++|++++|.+..+.+..+..+++|++|++++|.+....+|..+..++
T Consensus        94 ------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~  149 (276)
T 2z62_A           94 ------------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  149 (276)
T ss_dssp             ------------------------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             ------------------------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC
Confidence                                    14556667777777777777766667777888888888888776555677777788


Q ss_pred             CCcEEEccCCcCCCCCCccCCCCCCCc----EEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCC
Q 047929          222 DLVFLDLSSNIFRGPIPDGFKNLTSLR----YLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIK  297 (790)
Q Consensus       222 ~L~~L~l~~~~~~~~~p~~~~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~  297 (790)
                      +|++|++++|++.+..+..+..+++|+    +|++++|.+.+..+..+.. .+|+.|++++|.+++ ++...+..+++|+
T Consensus       150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  227 (276)
T 2z62_A          150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS-VPDGIFDRLTSLQ  227 (276)
T ss_dssp             TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC-CCTTTTTTCCSCC
T ss_pred             CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceee-cCHhHhccccccc
Confidence            888888888887766556666665555    7788888777655544433 467788888777763 3443366777777


Q ss_pred             EEEccCCCCCCC
Q 047929          298 TLDLSFNELGQD  309 (790)
Q Consensus       298 ~L~l~~~~~~~~  309 (790)
                      .|++++|.+...
T Consensus       228 ~L~l~~N~~~c~  239 (276)
T 2z62_A          228 KIWLHTNPWDCS  239 (276)
T ss_dssp             EEECCSSCBCCC
T ss_pred             EEEccCCccccc
Confidence            777777776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.2e-20  Score=191.90  Aligned_cols=202  Identities=19%  Similarity=0.274  Sum_probs=125.6

Q ss_pred             CCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcE
Q 047929          479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRI  558 (790)
Q Consensus       479 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  558 (790)
                      .++++++++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|+.|++++|.+.+ ++..  ..+++|++
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L~~   81 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLGT   81 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTCCE
T ss_pred             ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcCCE
Confidence            3445555555555554 2333332  455555555555555555555555556666665555542 2221  24566666


Q ss_pred             EEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccch
Q 047929          559 LNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFM  638 (790)
Q Consensus       559 L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  638 (790)
                      |++++|+++ .+|..+..+++|+.|++++|.+++..|..+.++++                                   
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~-----------------------------------  125 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-----------------------------------  125 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-----------------------------------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC-----------------------------------
Confidence            666666665 34555666667777777777666544444444433                                   


Q ss_pred             hhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCC
Q 047929          639 VEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS  718 (790)
Q Consensus       639 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~  718 (790)
                               |++|++++|.+.+..+..|..+++|++|++++|+++...+..|..+++|++|++++|++. .+|..+..+.
T Consensus       126 ---------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~  195 (290)
T 1p9a_G          126 ---------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (290)
T ss_dssp             ---------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             ---------CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc
Confidence                     346777777776555556677788888888888887555556677888888888888887 5677777777


Q ss_pred             CCCEEECcCCcccc
Q 047929          719 FLNHLNLSDNKLVG  732 (790)
Q Consensus       719 ~L~~L~l~~n~l~~  732 (790)
                      +|+.|++++|++..
T Consensus       196 ~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          196 LLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCSEEECCSCCBCC
T ss_pred             cCCeEEeCCCCccC
Confidence            88888888887754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=8.6e-21  Score=191.56  Aligned_cols=201  Identities=20%  Similarity=0.245  Sum_probs=123.9

Q ss_pred             CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929          481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN  560 (790)
Q Consensus       481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  560 (790)
                      ++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+ ++...+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV  115 (272)
T ss_dssp             TTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEE
T ss_pred             cceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCEEE
Confidence            344444444444431 11 234445555555555554432  244455555555555555542 2222223455666666


Q ss_pred             cCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhh
Q 047929          561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVE  640 (790)
Q Consensus       561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  640 (790)
                      +++|++++..+..+..+++|++|++++|.+.+..+..+..+++                                     
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------------------------------------  158 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN-------------------------------------  158 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------------------------------------
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc-------------------------------------
Confidence            6666665555555566666666666666666444433333332                                     


Q ss_pred             hhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCC
Q 047929          641 YNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL  720 (790)
Q Consensus       641 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  720 (790)
                             |+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+.       +++|
T Consensus       159 -------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l  224 (272)
T 3rfs_A          159 -------LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGI  224 (272)
T ss_dssp             -------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTT
T ss_pred             -------CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHH
Confidence                   34677777777655566677888899999999988877777788889999999999987744       3468


Q ss_pred             CEEECcCCcccccCCCC
Q 047929          721 NHLNLSDNKLVGKIPSS  737 (790)
Q Consensus       721 ~~L~l~~n~l~~~~p~~  737 (790)
                      +.|+++.|.+.|.+|..
T Consensus       225 ~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          225 RYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             HHHHHHHHHTGGGBBCT
T ss_pred             HHHHHHHHhCCCcccCc
Confidence            88899999999988876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=2.5e-20  Score=188.17  Aligned_cols=217  Identities=18%  Similarity=0.211  Sum_probs=180.3

Q ss_pred             CCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEc
Q 047929          482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNL  561 (790)
Q Consensus       482 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L  561 (790)
                      .+..+++.++.+.+..  ....+++|+.|++++|.+...  ..+..+++|++|++++|.+.+ ++ .+ ..+++|++|++
T Consensus        20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~l-~~l~~L~~L~L   92 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS-AL-KELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG-GG-TTCTTCCEEEC
T ss_pred             HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch-hh-cCCCCCCEEEC
Confidence            3444555555555332  345678999999999998854  358889999999999999875 43 33 47899999999


Q ss_pred             CCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhh
Q 047929          562 RSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEY  641 (790)
Q Consensus       562 ~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (790)
                      ++|.+++..+..+..+++|++|++++|.+.+..+..+..+++                                      
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--------------------------------------  134 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN--------------------------------------  134 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT--------------------------------------
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC--------------------------------------
Confidence            999999888878899999999999999998666655555544                                      


Q ss_pred             hhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCC
Q 047929          642 NSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLN  721 (790)
Q Consensus       642 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~  721 (790)
                            |++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++.+..|..+..+++|+
T Consensus       135 ------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          135 ------LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             ------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ------CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence                  56899999999977777789999999999999999988777889999999999999999988888899999999


Q ss_pred             EEECcCCcccccCCCCCcCCccCCccccCCcccC
Q 047929          722 HLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCG  755 (790)
Q Consensus       722 ~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n~l~~  755 (790)
                      .|++++|++.+.+|      .++.+.+.+|.+.|
T Consensus       209 ~L~l~~N~~~~~~~------~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          209 YIWLHDNPWDCTCP------GIRYLSEWINKHSG  236 (272)
T ss_dssp             EEECCSSCBCCCTT------TTHHHHHHHHHTGG
T ss_pred             EEEccCCCccccCc------HHHHHHHHHHhCCC
Confidence            99999999987766      46677777776665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=8.3e-20  Score=185.60  Aligned_cols=202  Identities=21%  Similarity=0.233  Sum_probs=169.5

Q ss_pred             CCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCC
Q 047929          501 MGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSL  580 (790)
Q Consensus       501 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L  580 (790)
                      +..+++++.++++++.++.+.+ .+.  ++++.|++++|.+.+..+..+ ..+++|++|++++|.+++..+.  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~-~~~--~~l~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPP-DLP--KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS-CCC--TTCCEEECTTSCCSEEEGGGG-TTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCCcCCC-CCC--CCCCEEEcCCCcCCccCHHHh-hcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            4567899999999999986543 332  689999999999986555555 4799999999999999876543  789999


Q ss_pred             cEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC
Q 047929          581 QILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG  660 (790)
Q Consensus       581 ~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  660 (790)
                      +.|++++|.+. .+|..+..++                                            .|++|++++|.+++
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~--------------------------------------------~L~~L~l~~N~l~~  114 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLP--------------------------------------------ALTVLDVSFNRLTS  114 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCT--------------------------------------------TCCEEECCSSCCCC
T ss_pred             CEEECCCCcCC-cCchhhccCC--------------------------------------------CCCEEECCCCcCcc
Confidence            99999999987 5565544443                                            45789999999997


Q ss_pred             CCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcC
Q 047929          661 EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQL  740 (790)
Q Consensus       661 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~  740 (790)
                      ..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++....+..|..+++|+.|++++|++...++.....
T Consensus       115 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~  194 (290)
T 1p9a_G          115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS  194 (290)
T ss_dssp             CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc
Confidence            77788999999999999999999877788899999999999999999776777899999999999999998544444667


Q ss_pred             CccCCccccCCcc
Q 047929          741 QSFGASSITGNDL  753 (790)
Q Consensus       741 ~sl~~l~~~~n~l  753 (790)
                      .+|+.+.+.+|++
T Consensus       195 ~~L~~l~L~~Np~  207 (290)
T 1p9a_G          195 HLLPFAFLHGNPW  207 (290)
T ss_dssp             CCCSEEECCSCCB
T ss_pred             ccCCeEEeCCCCc
Confidence            7899999999954

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=2.4e-22  Score=210.60  Aligned_cols=270  Identities=19%  Similarity=0.130  Sum_probs=155.1

Q ss_pred             CCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCC--CCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccc
Q 047929           33 DCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDL--KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG  110 (790)
Q Consensus        33 ~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l--~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~  110 (790)
                      -|..|.++.++  +..++.++++++.+.   +..+.++  +++++|++++|.+.+. .+ .+.++++|++|++++|.+++
T Consensus        35 vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L~L~~~~l~~  107 (336)
T 2ast_B           35 VCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHMDLSNSVIEV  107 (336)
T ss_dssp             SCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEEECTTCEECH
T ss_pred             HHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEEEccCCCcCH
Confidence            35579888875  456889999998775   3456666  8999999999988854 33 46678999999999998876


Q ss_pred             c-CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCc
Q 047929          111 W-IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAP  189 (790)
Q Consensus       111 ~-lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  189 (790)
                      . +|..+..+++|++|++++|.+.  ......++.+++|++|+++++.......+...+..                   
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~~l~--~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-------------------  166 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGLRLS--DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-------------------  166 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTCBCC--HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-------------------
T ss_pred             HHHHHHHhhCCCCCEEeCcCcccC--HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-------------------
Confidence            5 7777888999999999988643  12223344455555555555532222222223444                   


Q ss_pred             ccCcCCCCCCEEECCCC-CCCCCCcchhccCCC-CCcEEEccCCc--CC-CCCCccCCCCCCCcEEeCCCCc-CCccccc
Q 047929          190 LASANFSSLNALDLSGN-LFGKTSIPSWVFGLS-DLVFLDLSSNI--FR-GPIPDGFKNLTSLRYLDLSYNQ-FNSTISD  263 (790)
Q Consensus       190 ~~l~~l~~L~~L~L~~~-~l~~~~lp~~l~~l~-~L~~L~l~~~~--~~-~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~  263 (790)
                           +++|++|++++| .+++..++..+..++ +|++|++++|.  +. ..+|..+..+++|++|++++|. +++..+.
T Consensus       167 -----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  241 (336)
T 2ast_B          167 -----CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  241 (336)
T ss_dssp             -----CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             -----CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence                 445555555555 443222344444455 55555555552  22 1233334455555555555555 4444444


Q ss_pred             cccCCCCCCEEEccCcc-cccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchh
Q 047929          264 CFSNFDDLEYLSLGYNR-LQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQ  342 (790)
Q Consensus       264 ~l~~l~~L~~L~l~~~~-l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  342 (790)
                      .+..+++|++|++++|. +..... ..+..+++|+.|++++| +......     .+.  ..++.|++++|.+++..|..
T Consensus       242 ~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~-i~~~~~~-----~l~--~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          242 EFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI-VPDGTLQ-----LLK--EALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS-SCTTCHH-----HHH--HHSTTSEESCCCSCCTTCSS
T ss_pred             HHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc-cCHHHHH-----HHH--hhCcceEEecccCccccCCc
Confidence            55555566666665553 111111 12455666666666666 2221111     111  12445556777777666655


Q ss_pred             hc
Q 047929          343 LG  344 (790)
Q Consensus       343 l~  344 (790)
                      ++
T Consensus       313 ~~  314 (336)
T 2ast_B          313 IG  314 (336)
T ss_dssp             CS
T ss_pred             cc
Confidence            44

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=3.4e-20  Score=184.78  Aligned_cols=214  Identities=19%  Similarity=0.252  Sum_probs=131.2

Q ss_pred             CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929          481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN  560 (790)
Q Consensus       481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  560 (790)
                      ...+.++++++.++ .+|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ ..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-DDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEE
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-ccCCcCCEEE
Confidence            34567777777776 4554443  567777777777776666666666666666666665553222222 2444555555


Q ss_pred             cCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhh
Q 047929          561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVE  640 (790)
Q Consensus       561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  640 (790)
                      +++|++++..+..+..+++|+                                                           
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~-----------------------------------------------------------  110 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLD-----------------------------------------------------------  110 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCC-----------------------------------------------------------
T ss_pred             CCCCcccccChhHhcccCCCC-----------------------------------------------------------
Confidence            555554444333344444444                                                           


Q ss_pred             hhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCC
Q 047929          641 YNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL  720 (790)
Q Consensus       641 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  720 (790)
                               +|+|++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++.+..+..+..+++|
T Consensus       111 ---------~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          111 ---------KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             ---------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ---------EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence                     55555555554444556778888888888888886666678888899999999999987777788888999


Q ss_pred             CEEECcCCcccccCCCCCcC------CccCCccccCCcccCCCCC-CCCcccc
Q 047929          721 NHLNLSDNKLVGKIPSSTQL------QSFGASSITGNDLCGAPLS-NCTEKNV  766 (790)
Q Consensus       721 ~~L~l~~n~l~~~~p~~~~~------~sl~~l~~~~n~l~~~~~~-~c~~~~~  766 (790)
                      +.|++++|++.+..+....+      ...+.....++.+++.|.. .|..++.
T Consensus       182 ~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  234 (251)
T 3m19_A          182 QTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKV  234 (251)
T ss_dssp             CEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTSCB
T ss_pred             CEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCCcE
Confidence            99999999987764332211      1122334456667776666 6876643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=3.5e-20  Score=183.41  Aligned_cols=199  Identities=16%  Similarity=0.204  Sum_probs=125.3

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCcEEECcCCc-ccccCchhhhhcCCCCcEEEcCC-CcccccCCccccCCCCCcEE
Q 047929          506 SLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE-FVGNIPTWMGERFSRLRILNLRS-NKLHGIFPIQICHLSSLQIL  583 (790)
Q Consensus       506 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L  583 (790)
                      +|++|++++|+++++.+..|..+++|++|++++|. +. .++...+..+++|++|++++ |++++..+..|..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            55555555555555555455555555555555554 33 33333333556666666665 66665555666677777777


Q ss_pred             EccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCc-cCCCCC
Q 047929          584 DVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMN-NFSGEI  662 (790)
Q Consensus       584 ~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~  662 (790)
                      ++++|.+++ +|. +..+++|+                                         .|+.|++++| .+.+..
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~-----------------------------------------~L~~L~l~~N~~l~~i~  147 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTD-----------------------------------------IFFILEITDNPYMTSIP  147 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCC-----------------------------------------SEEEEEEESCTTCCEEC
T ss_pred             eCCCCCCcc-ccc-cccccccc-----------------------------------------cccEEECCCCcchhhcC
Confidence            777777664 443 33333321                                         1346777777 776555


Q ss_pred             CcccccCCCCC-EEeCCCCcCCcCCCccccCCCCCCEEeCcCcc-CccccCccccCC-CCCCEEECcCCcccccCCCCCc
Q 047929          663 PMEVTNLKGLQ-SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQ-ISGKIPQSMSSL-SFLNHLNLSDNKLVGKIPSSTQ  739 (790)
Q Consensus       663 ~~~~~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~~~~  739 (790)
                      +..|..+++|+ +|++++|.++...+..|.. ++|++|++++|+ +....+..|..+ ++|+.|++++|++.+ +|.. .
T Consensus       148 ~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~  224 (239)
T 2xwt_C          148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-G  224 (239)
T ss_dssp             TTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-T
T ss_pred             cccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-H
Confidence            55677788888 8888888877444444554 778888888884 776666777777 888888888888764 4444 5


Q ss_pred             CCccCCccccCC
Q 047929          740 LQSFGASSITGN  751 (790)
Q Consensus       740 ~~sl~~l~~~~n  751 (790)
                      +.+|+.|.+.++
T Consensus       225 ~~~L~~L~l~~~  236 (239)
T 2xwt_C          225 LEHLKELIARNT  236 (239)
T ss_dssp             CTTCSEEECTTC
T ss_pred             hccCceeeccCc
Confidence            667777777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.6e-19  Score=179.92  Aligned_cols=191  Identities=21%  Similarity=0.287  Sum_probs=118.2

Q ss_pred             CCCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCccccc
Q 047929           32 VDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGW  111 (790)
Q Consensus        32 ~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~  111 (790)
                      ++|+.|.|..|.   ...++++++++.++ .+|..+.  ++++.|+|++|.+.+. .+..+.++++|++|++++|.+.+.
T Consensus         2 ~~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~   74 (251)
T 3m19_A            2 KTCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTL   74 (251)
T ss_dssp             --CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             ccCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCcc
Confidence            357789999994   24557888888887 5565554  5889999999988866 566788889999999999988887


Q ss_pred             CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCccc
Q 047929          112 IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLA  191 (790)
Q Consensus       112 lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  191 (790)
                      .+..+..+++|++|++++|.+...+..                            .+..+++|++|++++|.+..+++..
T Consensus        75 ~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------------~~~~l~~L~~L~L~~N~l~~~~~~~  126 (251)
T 3m19_A           75 SAGVFDDLTELGTLGLANNQLASLPLG----------------------------VFDHLTQLDKLYLGGNQLKSLPSGV  126 (251)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTT----------------------------TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CHhHhccCCcCCEEECCCCcccccChh----------------------------HhcccCCCCEEEcCCCcCCCcChhH
Confidence            777788888888888887754322110                            2334444444444444444444444


Q ss_pred             CcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCC
Q 047929          192 SANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDL  271 (790)
Q Consensus       192 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  271 (790)
                      +..+++|++|                         ++++|.+.+..+..|..+++|++|++++|++.+..+..+..+++|
T Consensus       127 ~~~l~~L~~L-------------------------~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          127 FDRLTKLKEL-------------------------RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             TTTCTTCCEE-------------------------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hccCCcccEE-------------------------ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            4444444444                         444444443333344555555555555555554444445555555


Q ss_pred             CEEEccCcccc
Q 047929          272 EYLSLGYNRLQ  282 (790)
Q Consensus       272 ~~L~l~~~~l~  282 (790)
                      +.|++++|++.
T Consensus       182 ~~L~l~~N~~~  192 (251)
T 3m19_A          182 QTITLFGNQFD  192 (251)
T ss_dssp             CEEECCSCCBC
T ss_pred             CEEEeeCCcee
Confidence            55555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=5.3e-22  Score=211.93  Aligned_cols=248  Identities=14%  Similarity=0.191  Sum_probs=186.1

Q ss_pred             CCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcc---cccCCcCC-------CCC
Q 047929          435 HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKF---TGSIPISM-------GTL  504 (790)
Q Consensus       435 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~---~~~~~~~~-------~~l  504 (790)
                      .++..+..+++|++|++++|.+....+.         .++..+..+++|++|++++|.+   .+.+|..+       ..+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~---------~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~   93 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAAR---------WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC   93 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHH---------HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHH---------HHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence            3455677788899999999987754332         1233456788999999998644   33444333       678


Q ss_pred             CCCCEEEccCCcccc----cCCccccCCCCCcEEECcCCcccccCchhhhhc---C---------CCCcEEEcCCCccc-
Q 047929          505 TSLRSLNLRSNRLSG----IIPVPFENCSQLVALDMGENEFVGNIPTWMGER---F---------SRLRILNLRSNKLH-  567 (790)
Q Consensus       505 ~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~---~---------~~L~~L~L~~n~~~-  567 (790)
                      ++|++|++++|.++.    ..+..+..+++|++|++++|.+.+..+..+...   +         ++|++|++++|+++ 
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            999999999999887    345577888999999999998875444444322   2         89999999999987 


Q ss_pred             ccCC---ccccCCCCCcEEEccCCccccc-----CCcchhccccccccCCccccceeecccccccceeeeeeeeeccchh
Q 047929          568 GIFP---IQICHLSSLQILDVAYNRLSGS-----VPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMV  639 (790)
Q Consensus       568 ~~~~---~~~~~l~~L~~L~ls~n~l~~~-----~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  639 (790)
                      ...+   ..+..+++|+.|++++|.+...     .|..+.                                        
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~----------------------------------------  213 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA----------------------------------------  213 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG----------------------------------------
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh----------------------------------------
Confidence            2333   3566788999999999987621     111222                                        


Q ss_pred             hhhhcccceeEEEccCccCC----CCCCcccccCCCCCEEeCCCCcCCcC----CCccccC--CCCCCEEeCcCccCcc-
Q 047929          640 EYNSILNLVRSIDISMNNFS----GEIPMEVTNLKGLQSLNLSHNSFIGK----IPETIGN--MRSIESLDLSGNQISG-  708 (790)
Q Consensus       640 ~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~--l~~L~~L~l~~n~l~~-  708 (790)
                          .++.|+.|+|++|.++    ..+|..+..+++|++|+|++|.+++.    ++.++..  +++|++|++++|.+.. 
T Consensus       214 ----~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~  289 (386)
T 2ca6_A          214 ----YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD  289 (386)
T ss_dssp             ----GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             ----cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence                2445678999999985    56778888999999999999999865    4566643  8999999999999997 


Q ss_pred             ---ccCccc-cCCCCCCEEECcCCcccccCC
Q 047929          709 ---KIPQSM-SSLSFLNHLNLSDNKLVGKIP  735 (790)
Q Consensus       709 ---~~p~~l-~~l~~L~~L~l~~n~l~~~~p  735 (790)
                         .+|..+ ..+++|++|++++|++.+..|
T Consensus       290 g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          290 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence               477777 668999999999999987654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=7.5e-21  Score=199.19  Aligned_cols=249  Identities=19%  Similarity=0.231  Sum_probs=129.9

Q ss_pred             ceEEEcCCCCCCCCCCcccccC--CCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCccccc-CC
Q 047929          422 LLALRLRSCHLGPHFPSWLHSQ--KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGS-IP  498 (790)
Q Consensus       422 L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~  498 (790)
                      ++.++++++.+.   +..+..+  ++++.+++++|.+.+..+              .+..+++|++|++++|.+++. ++
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~--------------~~~~~~~L~~L~L~~~~l~~~~~~  111 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA--------------EHFSPFRVQHMDLSNSVIEVSTLH  111 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC--------------SCCCCBCCCEEECTTCEECHHHHH
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccch--------------hhccCCCCCEEEccCCCcCHHHHH
Confidence            445555555443   2334444  566677776666544322              123456667777776666543 44


Q ss_pred             cCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCC-ccccc-CchhhhhcCCCCcEEEcCCC-ccccc-CCccc
Q 047929          499 ISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGEN-EFVGN-IPTWMGERFSRLRILNLRSN-KLHGI-FPIQI  574 (790)
Q Consensus       499 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~~L~~L~L~~n-~~~~~-~~~~~  574 (790)
                      ..+..+++|++|++++|.+++..+..+..+++|++|++++| .+.+. ++. +...+++|++|++++| .+++. .+..+
T Consensus       112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~  190 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQVAV  190 (336)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred             HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence            45566666777777666666555555666666666666666 34432 222 2235666666666666 66542 34445


Q ss_pred             cCCC-CCcEEEccCCc--cc-ccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeE
Q 047929          575 CHLS-SLQILDVAYNR--LS-GSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRS  650 (790)
Q Consensus       575 ~~l~-~L~~L~ls~n~--l~-~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  650 (790)
                      ..++ +|++|++++|.  ++ +.+|..+.+                                            ++.|++
T Consensus       191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~--------------------------------------------~~~L~~  226 (336)
T 2ast_B          191 AHVSETITQLNLSGYRKNLQKSDLSTLVRR--------------------------------------------CPNLVH  226 (336)
T ss_dssp             HHSCTTCCEEECCSCGGGSCHHHHHHHHHH--------------------------------------------CTTCSE
T ss_pred             HhcccCCCEEEeCCCcccCCHHHHHHHHhh--------------------------------------------CCCCCE
Confidence            5566 66666666663  22 112222111                                            223445


Q ss_pred             EEccCcc-CCCCCCcccccCCCCCEEeCCCCc-CCcCCCccccCCCCCCEEeCcCccCccccCccccCCC-CCCEEECcC
Q 047929          651 IDISMNN-FSGEIPMEVTNLKGLQSLNLSHNS-FIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS-FLNHLNLSD  727 (790)
Q Consensus       651 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~  727 (790)
                      |++++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++| +.   .+.+..+. +++.|++++
T Consensus       227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~  302 (336)
T 2ast_B          227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINC  302 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESC
T ss_pred             EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEec
Confidence            6666665 444444455555666666666653 21111123455556666666655 22   12233332 245555555


Q ss_pred             CcccccCCC
Q 047929          728 NKLVGKIPS  736 (790)
Q Consensus       728 n~l~~~~p~  736 (790)
                      |++.+..|.
T Consensus       303 n~l~~~~~~  311 (336)
T 2ast_B          303 SHFTTIARP  311 (336)
T ss_dssp             CCSCCTTCS
T ss_pred             ccCccccCC
Confidence            555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=3.1e-21  Score=203.71  Aligned_cols=260  Identities=17%  Similarity=0.184  Sum_probs=180.3

Q ss_pred             EEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCC-CCcEEEccCCcccccCCcCCCC
Q 047929          425 LRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWP-DLRVLNLGNNKFTGSIPISMGT  503 (790)
Q Consensus       425 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~  503 (790)
                      +.++.+.+.+..|..+...++|++|++++|.+.+..+..+         ...+..++ +|++|++++|.+++..+..+..
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~   73 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVEL---------IQAFANTPASVTSLNLSGNSLGFKNSDELVQ   73 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHH---------HHHHHTCCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHH---------HHHHHhCCCceeEEECcCCCCCHHHHHHHHH
Confidence            4566677777777766666778889998888876544211         12345666 7889999998888665555544


Q ss_pred             C-----CCCCEEEccCCcccccCCcc----ccCC-CCCcEEECcCCcccccCchhhhhc----CCCCcEEEcCCCccccc
Q 047929          504 L-----TSLRSLNLRSNRLSGIIPVP----FENC-SQLVALDMGENEFVGNIPTWMGER----FSRLRILNLRSNKLHGI  569 (790)
Q Consensus       504 l-----~~L~~L~L~~n~i~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~L~L~~n~~~~~  569 (790)
                      +     ++|++|++++|.+++..+..    +..+ ++|++|++++|.+.+..+..+...    .++|++|++++|++++.
T Consensus        74 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  153 (362)
T 3goz_A           74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK  153 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred             HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence            3     88999999999888766553    3344 789999999998876655554332    35899999999988743


Q ss_pred             C----CccccCCC-CCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhc
Q 047929          570 F----PIQICHLS-SLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSI  644 (790)
Q Consensus       570 ~----~~~~~~l~-~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (790)
                      .    +..+..++ +|++|++++|.+++..+..+...                                        ...
T Consensus       154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~----------------------------------------l~~  193 (362)
T 3goz_A          154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF----------------------------------------LAS  193 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH----------------------------------------HHT
T ss_pred             HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHH----------------------------------------HHh
Confidence            3    23344555 89999999998876555433321                                        011


Q ss_pred             c-cceeEEEccCccCCCC----CCccccc-CCCCCEEeCCCCcCCcCCC----ccccCCCCCCEEeCcCccCccc-----
Q 047929          645 L-NLVRSIDISMNNFSGE----IPMEVTN-LKGLQSLNLSHNSFIGKIP----ETIGNMRSIESLDLSGNQISGK-----  709 (790)
Q Consensus       645 ~-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~l~~n~l~~~-----  709 (790)
                      . +.|++|||++|.+.+.    ++..+.. .++|++|++++|.+++..+    ..+..+++|++|++++|.+...     
T Consensus       194 ~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~  273 (362)
T 3goz_A          194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC  273 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred             CCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence            2 3567899999988752    3444544 3589999999998886544    3456678899999999984432     


Q ss_pred             --cCccccCCCCCCEEECcCCccccc
Q 047929          710 --IPQSMSSLSFLNHLNLSDNKLVGK  733 (790)
Q Consensus       710 --~p~~l~~l~~L~~L~l~~n~l~~~  733 (790)
                        ++..+..+++|+.|++++|++...
T Consensus       274 ~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          274 KALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHhccCCceEEEecCCCcCCCc
Confidence              345677788899999999988765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=1.2e-19  Score=179.58  Aligned_cols=197  Identities=16%  Similarity=0.231  Sum_probs=128.6

Q ss_pred             CCcEEEccCCcccccCCcCCCCCCCCCEEEccCCc-ccccCCccccCCCCCcEEECcC-CcccccCchhhhhcCCCCcEE
Q 047929          482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNR-LSGIIPVPFENCSQLVALDMGE-NEFVGNIPTWMGERFSRLRIL  559 (790)
Q Consensus       482 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L  559 (790)
                      +++.|++++|.+++..+..|..+++|++|++++|+ ++.+.+..|..+++|++|++++ |.+. .++...+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            56677777777765555566667777777777775 6666666667777777777776 6665 3333333456777777


Q ss_pred             EcCCCcccccCCccccCCCCCc---EEEccCC-cccccCCcchhccccccccCCccccceeecccccccceeeeeeeeec
Q 047929          560 NLRSNKLHGIFPIQICHLSSLQ---ILDVAYN-RLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMK  635 (790)
Q Consensus       560 ~L~~n~~~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  635 (790)
                      ++++|++++ +|. +..+++|+   .|++++| .+.+..+..+.+++                                 
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~---------------------------------  155 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC---------------------------------  155 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB---------------------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh---------------------------------
Confidence            777777765 343 66666666   7777777 66544443344333                                 


Q ss_pred             cchhhhhhccccee-EEEccCccCCCCCCcccccCCCCCEEeCCCCc-CCcCCCccccCC-CCCCEEeCcCccCccccCc
Q 047929          636 GFMVEYNSILNLVR-SIDISMNNFSGEIPMEVTNLKGLQSLNLSHNS-FIGKIPETIGNM-RSIESLDLSGNQISGKIPQ  712 (790)
Q Consensus       636 ~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~  712 (790)
                                 .|+ .|++++|++. .+|......++|++|++++|+ +++..+..|.++ ++|+.|++++|++.. +|.
T Consensus       156 -----------~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~  222 (239)
T 2xwt_C          156 -----------NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPS  222 (239)
T ss_dssp             -----------SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCC
T ss_pred             -----------cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CCh
Confidence                       345 6777777776 444433233778888888884 776666778888 888888888888874 443


Q ss_pred             cccCCCCCCEEECcCCc
Q 047929          713 SMSSLSFLNHLNLSDNK  729 (790)
Q Consensus       713 ~l~~l~~L~~L~l~~n~  729 (790)
                      .  .+++|+.|+++++.
T Consensus       223 ~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          223 K--GLEHLKELIARNTW  237 (239)
T ss_dssp             T--TCTTCSEEECTTC-
T ss_pred             h--HhccCceeeccCcc
Confidence            3  56788888888764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=5.7e-19  Score=181.39  Aligned_cols=194  Identities=22%  Similarity=0.301  Sum_probs=102.6

Q ss_pred             CcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCC
Q 047929           67 LVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPS  146 (790)
Q Consensus        67 l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~  146 (790)
                      ..++++|++|+++++.+..  ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+...    ..+..++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~----~~~~~l~  107 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV----SAIAGLQ  107 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC----GGGTTCT
T ss_pred             HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc----hhhcCCC
Confidence            3456677777777776663  33 46667777777777777666 333 66777777777777654322    2344444


Q ss_pred             CCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEE
Q 047929          147 LLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL  226 (790)
Q Consensus       147 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L  226 (790)
                      +|++|+++++.+...+    .+..+++|++|++++|.+..+.+  +..+++|++|++++|.+.+  ++. +..+++|++|
T Consensus       108 ~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L  178 (308)
T 1h6u_A          108 SIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTL  178 (308)
T ss_dssp             TCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEE
T ss_pred             CCCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEE
Confidence            4444444444444332    24455555555555555544433  4455555555555555432  232 4455555555


Q ss_pred             EccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccc
Q 047929          227 DLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ  282 (790)
Q Consensus       227 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  282 (790)
                      ++++|.+.+. +. +..+++|++|++++|++.+..  .+..+++|+.|++++|+++
T Consensus       179 ~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          179 KADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             ECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             ECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            5555555432 21 445555555555555554432  2444555555555555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=4.8e-19  Score=181.95  Aligned_cols=191  Identities=20%  Similarity=0.367  Sum_probs=108.8

Q ss_pred             CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929          481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN  560 (790)
Q Consensus       481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  560 (790)
                      ++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ ++ .+ ..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~-~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AI-AGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GG-TTCTTCCEEE
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hh-cCCCCCCEEE
Confidence            344444444444442 22 24444555555555555544332  4555555555555555442 22 12 2455666666


Q ss_pred             cCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhh
Q 047929          561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVE  640 (790)
Q Consensus       561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  640 (790)
                      +++|++++..  .+..+++|+.|++++|.+.+..+  +..                                        
T Consensus       114 l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~----------------------------------------  149 (308)
T 1h6u_A          114 LTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAG----------------------------------------  149 (308)
T ss_dssp             CTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGG----------------------------------------
T ss_pred             CCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccC----------------------------------------
Confidence            6666665432  25566666666666666553221  222                                        


Q ss_pred             hhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCC
Q 047929          641 YNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL  720 (790)
Q Consensus       641 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  720 (790)
                          ++.|+.|++++|.+.+ ++. +..+++|++|++++|.+++..+  +..+++|++|++++|++.+..  .+..+++|
T Consensus       150 ----l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L  219 (308)
T 1h6u_A          150 ----LTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNL  219 (308)
T ss_dssp             ----CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTC
T ss_pred             ----CCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCC
Confidence                2234566677776664 232 6677777777777777764332  677777888888888777544  26777778


Q ss_pred             CEEECcCCcccc
Q 047929          721 NHLNLSDNKLVG  732 (790)
Q Consensus       721 ~~L~l~~n~l~~  732 (790)
                      +.|++++|++.+
T Consensus       220 ~~L~l~~N~i~~  231 (308)
T 1h6u_A          220 FIVTLTNQTITN  231 (308)
T ss_dssp             CEEEEEEEEEEC
T ss_pred             CEEEccCCeeec
Confidence            888888887764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=1.7e-19  Score=185.92  Aligned_cols=204  Identities=22%  Similarity=0.246  Sum_probs=109.4

Q ss_pred             CCCcEEEccCCcccccCCcCC--CCCCCCCEEEccCCcccccCC----ccccCCCCCcEEECcCCcccccCchhhhhcCC
Q 047929          481 PDLRVLNLGNNKFTGSIPISM--GTLTSLRSLNLRSNRLSGIIP----VPFENCSQLVALDMGENEFVGNIPTWMGERFS  554 (790)
Q Consensus       481 ~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  554 (790)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+..+ ..++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV-RAFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC-CCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh-ccCC
Confidence            457777777777776666665  666777777777777665333    223345666666666666653333333 3556


Q ss_pred             CCcEEEcCCCccccc---C-CccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeee
Q 047929          555 RLRILNLRSNKLHGI---F-PIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEI  630 (790)
Q Consensus       555 ~L~~L~L~~n~~~~~---~-~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~  630 (790)
                      +|++|++++|++.+.   . +..+..+++|++|++++|.++. ++.....                              
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~------------------------------  218 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAA------------------------------  218 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH------------------------------
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH------------------------------
Confidence            666666666665431   1 1223455666666666665541 1110000                              


Q ss_pred             eeeeccchhhhhhcccceeEEEccCccCCCCCCcccccC---CCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCc
Q 047929          631 SLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNL---KGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS  707 (790)
Q Consensus       631 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  707 (790)
                                ....++.|++|||++|.+.+..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|+++
T Consensus       219 ----------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          219 ----------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             ----------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred             ----------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence                      00112334556666666665545544444   46666666666665 4454443  56666666666665


Q ss_pred             cccCccccCCCCCCEEECcCCccc
Q 047929          708 GKIPQSMSSLSFLNHLNLSDNKLV  731 (790)
Q Consensus       708 ~~~p~~l~~l~~L~~L~l~~n~l~  731 (790)
                      +. |. +..+++|+.|++++|++.
T Consensus       286 ~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          286 RA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             SC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             CC-ch-hhhCCCccEEECcCCCCC
Confidence            32 22 455566666666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=1.9e-19  Score=185.57  Aligned_cols=226  Identities=21%  Similarity=0.206  Sum_probs=159.6

Q ss_pred             cEEEEEcCCCCCCcccc---ccCcCCCCCCEEeCCCCCCCCCCcCccc--cCCCCCCEEeCCCCcccccCC----CCCCC
Q 047929           48 HVLELNLERSELGGKIN---PALVDLKHLNLLDLSGNDFQGIQIPEYI--GSMDNLRYLNLSGAGFAGWIP----HQLGN  118 (790)
Q Consensus        48 ~v~~L~L~~~~~~~~~~---~~l~~l~~L~~L~Ls~~~~~~~~l~~~~--~~l~~L~~L~Ls~~~~~~~lp----~~l~~  118 (790)
                      +++.+.+.++.+.....   ..+..+++|++|++++|.+.+. .|..+  ..+++|++|++++|.+.+..+    ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            56777777776643211   1122346688888888887765 56666  778888888888888776444    33456


Q ss_pred             CCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhH--HhhCCCCCCCEEEccCccccccCcc---cCc
Q 047929          119 LSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWL--LVINSLPSLKVLKLFSCKLHHFAPL---ASA  193 (790)
Q Consensus       119 l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~---~l~  193 (790)
                      +++|++|++++|.+...  ....++++++|++|++++|.+.+.....  ..+..+++|++|++++|.++.++..   .+.
T Consensus       144 ~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAF--SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             CSCCCEEEEECCSSCCC--CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchh--hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            88888888888875332  2245667888888888888765432221  1236788888888888888654332   356


Q ss_pred             CCCCCCEEECCCCCCCCCCcchhccCC---CCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCC
Q 047929          194 NFSSLNALDLSGNLFGKTSIPSWVFGL---SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD  270 (790)
Q Consensus       194 ~l~~L~~L~L~~~~l~~~~lp~~l~~l---~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  270 (790)
                      .+++|++|++++|.+.+ ..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++
T Consensus       222 ~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~  295 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE  295 (310)
T ss_dssp             HTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred             cCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence            77889999999988865 346666655   68999999999888 5676664  7899999999988865 22 677888


Q ss_pred             CCEEEccCcccc
Q 047929          271 LEYLSLGYNRLQ  282 (790)
Q Consensus       271 L~~L~l~~~~l~  282 (790)
                      |+.|++++|+++
T Consensus       296 L~~L~L~~N~l~  307 (310)
T 4glp_A          296 VDNLTLDGNPFL  307 (310)
T ss_dssp             CSCEECSSTTTS
T ss_pred             ccEEECcCCCCC
Confidence            999999998875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.79  E-value=1.5e-20  Score=200.76  Aligned_cols=194  Identities=18%  Similarity=0.157  Sum_probs=85.9

Q ss_pred             CccccCCCCCCEEeCCCCccccc----CCCCCCCCCCCcEEECcCCcccccccC----c----cccCCCCCCcEEECCCC
Q 047929           89 PEYIGSMDNLRYLNLSGAGFAGW----IPHQLGNLSNLMHLDLSGSYYELRVED----I----SWLAGPSLLEHLDTSDV  156 (790)
Q Consensus        89 ~~~~~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~ls~~~~~~~~~~----~----~~l~~l~~L~~L~l~~~  156 (790)
                      +..+..+++|++|++++|.+...    ++..+.++++|++|++++|.+......    +    ..+..+++|++|++++|
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            34444445555555555544433    222344455555555554432211100    0    11233344444444444


Q ss_pred             CCCCC--chhHHhhCCCCCCCEEEccCccccccCcccCc----CC---------CCCCEEECCCCCCCCCCcc---hhcc
Q 047929          157 DLIKA--SDWLLVINSLPSLKVLKLFSCKLHHFAPLASA----NF---------SSLNALDLSGNLFGKTSIP---SWVF  218 (790)
Q Consensus       157 ~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~----~l---------~~L~~L~L~~~~l~~~~lp---~~l~  218 (790)
                      .+...  ..++..+..+++|++|++++|.+.......+.    .+         ++|++|++++|.+....+|   ..+.
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            43332  12333455556666666666655433322222    22         5566666666655432333   2333


Q ss_pred             CCCCCcEEEccCCcCCC-----CCCccCCCCCCCcEEeCCCCcCC----ccccccccCCCCCCEEEccCcccc
Q 047929          219 GLSDLVFLDLSSNIFRG-----PIPDGFKNLTSLRYLDLSYNQFN----STISDCFSNFDDLEYLSLGYNRLQ  282 (790)
Q Consensus       219 ~l~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~l~  282 (790)
                      .+++|++|++++|.+..     ..+..+..+++|++|++++|.+.    ..++..+..+++|++|++++|.+.
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence            45555555555555441     12223445555555555555543    223334444444444544444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=3.6e-20  Score=195.51  Aligned_cols=256  Identities=17%  Similarity=0.145  Sum_probs=188.3

Q ss_pred             EEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCC----cCCCCCC-CCCEEEccCCcccccCCc
Q 047929          449 LDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIP----ISMGTLT-SLRSLNLRSNRLSGIIPV  523 (790)
Q Consensus       449 L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~  523 (790)
                      +.++.|.+.+..+             ..+...++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+.
T Consensus         3 ~~ls~n~~~~~~~-------------~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~   69 (362)
T 3goz_A            3 YKLTLHPGSNPVE-------------EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD   69 (362)
T ss_dssp             EECCCCTTCCHHH-------------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred             cccccccchHHHH-------------HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence            5677777665433             333455669999999999986655    5677788 899999999999987776


Q ss_pred             cccCC-----CCCcEEECcCCcccccCchhhhhc---C-CCCcEEEcCCCcccccCCccc----cC-CCCCcEEEccCCc
Q 047929          524 PFENC-----SQLVALDMGENEFVGNIPTWMGER---F-SRLRILNLRSNKLHGIFPIQI----CH-LSSLQILDVAYNR  589 (790)
Q Consensus       524 ~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~~---~-~~L~~L~L~~n~~~~~~~~~~----~~-l~~L~~L~ls~n~  589 (790)
                      .+..+     ++|++|++++|.+.+..+..+...   + ++|++|++++|++++..+..+    .. .++|++|++++|.
T Consensus        70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            66664     999999999999987776655432   3 799999999999986655443    33 3699999999999


Q ss_pred             ccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccc--
Q 047929          590 LSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVT--  667 (790)
Q Consensus       590 l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--  667 (790)
                      +.+..+..+...                                       .......|++|+|++|.+++..+..+.  
T Consensus       150 l~~~~~~~l~~~---------------------------------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  190 (362)
T 3goz_A          150 LGIKSSDELIQI---------------------------------------LAAIPANVNSLNLRGNNLASKNCAELAKF  190 (362)
T ss_dssp             GGGSCHHHHHHH---------------------------------------HHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             CCHHHHHHHHHH---------------------------------------HhcCCccccEeeecCCCCchhhHHHHHHH
Confidence            885443332210                                       001123678999999999876665443  


Q ss_pred             --cC-CCCCEEeCCCCcCCcC----CCccccC-CCCCCEEeCcCccCccccC----ccccCCCCCCEEECcCCccccc--
Q 047929          668 --NL-KGLQSLNLSHNSFIGK----IPETIGN-MRSIESLDLSGNQISGKIP----QSMSSLSFLNHLNLSDNKLVGK--  733 (790)
Q Consensus       668 --~l-~~L~~L~L~~n~l~~~----~p~~l~~-l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~l~~n~l~~~--  733 (790)
                        .+ ++|++|++++|.+++.    ++..+.. .++|++|++++|.+....+    ..+..+++|++|++++|++.+.  
T Consensus       191 l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~  270 (362)
T 3goz_A          191 LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK  270 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred             HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCH
Confidence              44 6999999999999863    3445555 3599999999999986544    3456789999999999984322  


Q ss_pred             -----CC-CCCcCCccCCccccCCcccCC
Q 047929          734 -----IP-SSTQLQSFGASSITGNDLCGA  756 (790)
Q Consensus       734 -----~p-~~~~~~sl~~l~~~~n~l~~~  756 (790)
                           ++ ....+.+|+.+++.+|.+.+.
T Consensus       271 ~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          271 EQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence                 22 224577789999999977643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=2e-18  Score=181.05  Aligned_cols=223  Identities=17%  Similarity=0.123  Sum_probs=138.8

Q ss_pred             CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccc-cCCccccCCCCCcE-EECcCCcccccCchhhhhcCCCCcE
Q 047929          481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG-IIPVPFENCSQLVA-LDMGENEFVGNIPTWMGERFSRLRI  558 (790)
Q Consensus       481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~-L~l~~n~~~~~~~~~~~~~~~~L~~  558 (790)
                      +++++|++++|+++...+..|..+++|++|+|++|++.+ +.+..|.+++++.+ +.+..|.+. .++...+..+++|++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhcccccc
Confidence            456666777766665444556666666777776666543 33345666666554 344445555 333333345666666


Q ss_pred             EEcCCCcccccCCccccCCCCCcEEEccCC-cccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccc
Q 047929          559 LNLRSNKLHGIFPIQICHLSSLQILDVAYN-RLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGF  637 (790)
Q Consensus       559 L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (790)
                      |++++|++....+..+....++..+++.++ .+....+..+..+                                    
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~------------------------------------  152 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL------------------------------------  152 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS------------------------------------
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhc------------------------------------
Confidence            666666666554444555555666666543 2322111122211                                    


Q ss_pred             hhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCC-CcCCcCCCccccCCCCCCEEeCcCccCccccCccccC
Q 047929          638 MVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSH-NSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSS  716 (790)
Q Consensus       638 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~  716 (790)
                             ...++.|++++|++. .+|.......+|++|++.+ |.++...+++|.++++|++||+++|+++...+..   
T Consensus       153 -------~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---  221 (350)
T 4ay9_X          153 -------SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---  221 (350)
T ss_dssp             -------BSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred             -------chhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence                   224567899999988 4555555567888999875 5555444457888899999999999988544433   


Q ss_pred             CCCCCEEECcCCcccccCCCCCcCCccCCccccCC
Q 047929          717 LSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN  751 (790)
Q Consensus       717 l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n  751 (790)
                      +.+|+.|.+.+|.-...+|....+.+|+.+.+.++
T Consensus       222 ~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred             hccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence            46777888877777778887777888888877665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=4e-18  Score=187.63  Aligned_cols=207  Identities=25%  Similarity=0.361  Sum_probs=136.9

Q ss_pred             CCCCCCCCCCCc-----ccCce-eecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCC
Q 047929           24 HLASWIGDVDCC-----EWGGV-VCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDN   97 (790)
Q Consensus        24 ~~~~w~~~~~~~-----~~~~~-~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~   97 (790)
                      .+.+|.....+|     .|.++ .|.  .+++++|+++++.+++ +|..+  +++|++|+|++|.+.  .+|   ..+++
T Consensus        32 ~l~~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~  101 (571)
T 3cvr_A           32 AWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI--SLP---ELPAS  101 (571)
T ss_dssp             HHHHHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS--CCC---CCCTT
T ss_pred             HHHHHhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc--ccc---cccCC
Confidence            345674445667     68888 785  4689999999999986 67656  389999999999998  467   45799


Q ss_pred             CCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEE
Q 047929           98 LRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVL  177 (790)
Q Consensus        98 L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  177 (790)
                      |++|++++|.+++ +|. +..  +|++|++++|.+...+.      .+++|+.|++++|.+...+.      .+++|++|
T Consensus       102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L  165 (571)
T 3cvr_A          102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE------LPALLEYINADNNQLTMLPE------LPTSLEVL  165 (571)
T ss_dssp             CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC------CCTTCCEE
T ss_pred             CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC------cCccccEEeCCCCccCcCCC------cCCCcCEE
Confidence            9999999999998 777 665  99999999997664322      45667777777666665432      34566666


Q ss_pred             EccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCC-------cEEEccCCcCCCCCCccCCCCCCCcEE
Q 047929          178 KLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL-------VFLDLSSNIFRGPIPDGFKNLTSLRYL  250 (790)
Q Consensus       178 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L-------~~L~l~~~~~~~~~p~~~~~l~~L~~L  250 (790)
                      ++++|.+..++.  +.  ++|++|++++|.++  .+|. +..  +|       +.|++++|.+. .+|..+..+++|+.|
T Consensus       166 ~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~--~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L  235 (571)
T 3cvr_A          166 SVRNNQLTFLPE--LP--ESLEALDVSTNLLE--SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI  235 (571)
T ss_dssp             ECCSSCCSCCCC--CC--TTCCEEECCSSCCS--SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred             ECCCCCCCCcch--hh--CCCCEEECcCCCCC--chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence            666666655443  33  56666666666553  3444 322  44       55555555555 345445555555555


Q ss_pred             eCCCCcCCcccccccc
Q 047929          251 DLSYNQFNSTISDCFS  266 (790)
Q Consensus       251 ~l~~~~~~~~~~~~l~  266 (790)
                      ++++|++++..|..+.
T Consensus       236 ~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          236 ILEDNPLSSRIRESLS  251 (571)
T ss_dssp             ECCSSSCCHHHHHHHH
T ss_pred             EeeCCcCCCcCHHHHH
Confidence            5555555555444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=1.1e-17  Score=161.35  Aligned_cols=86  Identities=24%  Similarity=0.357  Sum_probs=43.6

Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEE
Q 047929          505 TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD  584 (790)
Q Consensus       505 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  584 (790)
                      ++|++|++++|.++.+.+..|..+++|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            45555666555555544444555555555555555554 23332223445555555555555544444445555555555


Q ss_pred             ccCCccc
Q 047929          585 VAYNRLS  591 (790)
Q Consensus       585 ls~n~l~  591 (790)
                      +++|.+.
T Consensus       107 L~~N~l~  113 (208)
T 2o6s_A          107 LNTNQLQ  113 (208)
T ss_dssp             CCSSCCC
T ss_pred             cCCCcCc
Confidence            5555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=9.7e-18  Score=175.85  Aligned_cols=240  Identities=18%  Similarity=0.136  Sum_probs=122.4

Q ss_pred             cccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcC-ccccCCCCCCEEeCCCCcccccCC
Q 047929           35 CEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIP-EYIGSMDNLRYLNLSGAGFAGWIP  113 (790)
Q Consensus        35 ~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~-~~~~~l~~L~~L~Ls~~~~~~~lp  113 (790)
                      |.|..|.|.+            ++++ .+|..+  .+++++|+|++|+++  .+| .+|.++++|++|+|++|++.+.+|
T Consensus         9 C~~~~v~C~~------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N~i~~~i~   71 (350)
T 4ay9_X            9 CSNRVFLCQE------------SKVT-EIPSDL--PRNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIE   71 (350)
T ss_dssp             EETTEEEEES------------TTCC-SCCTTC--CTTCSEEEEESCCCS--EECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred             eeCCEEEecC------------CCCC-ccCcCc--CCCCCEEEccCCcCC--CcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence            6777777752            3333 344433  246666777776666  334 346666777777777766654343


Q ss_pred             -CCCCCCCCCcE-EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccC-ccccccCcc
Q 047929          114 -HQLGNLSNLMH-LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFS-CKLHHFAPL  190 (790)
Q Consensus       114 -~~l~~l~~L~~-L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~  190 (790)
                       .+|.++++|++ +.+++|++...+.  ..++++++|++|++++|.+...+..  .+....++..+++.+ +.+..++..
T Consensus        72 ~~~f~~L~~l~~~l~~~~N~l~~l~~--~~f~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~l~~l~l~~~~~i~~l~~~  147 (350)
T 4ay9_X           72 ADVFSNLPKLHEIRIEKANNLLYINP--EAFQNLPNLQYLLISNTGIKHLPDV--HKIHSLQKVLLDIQDNINIHTIERN  147 (350)
T ss_dssp             TTSBCSCTTCCEEEEEEETTCCEECT--TSBCCCTTCCEEEEEEECCSSCCCC--TTCCBSSCEEEEEESCTTCCEECTT
T ss_pred             hhHhhcchhhhhhhcccCCcccccCc--hhhhhccccccccccccccccCCch--hhcccchhhhhhhcccccccccccc
Confidence             34566666554 3334444332211  1233444444444444444333110  223334455555543 345555555


Q ss_pred             cCcCCC-CCCEEECCCCCCCCCCcchhccCCCCCcEEEccC-CcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCC
Q 047929          191 ASANFS-SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS-NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNF  268 (790)
Q Consensus       191 ~l~~l~-~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  268 (790)
                      .|..+. .++.|++++|.++  .+|..+....+|++|++.+ |.+....+..|..+++|++|++++|+++...+..+   
T Consensus       148 ~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---  222 (350)
T 4ay9_X          148 SFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---  222 (350)
T ss_dssp             SSTTSBSSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---
T ss_pred             chhhcchhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---
Confidence            555543 4666666666663  3555555555666666654 34443333455666666666666666665443333   


Q ss_pred             CCCCEEEccCcccccccCcccccCCCCCCEEEcc
Q 047929          269 DDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLS  302 (790)
Q Consensus       269 ~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~  302 (790)
                      .+|+.|.+.++.-...+|.  +..+++|+.+++.
T Consensus       223 ~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~  254 (350)
T 4ay9_X          223 ENLKKLRARSTYNLKKLPT--LEKLVALMEASLT  254 (350)
T ss_dssp             TTCCEEECTTCTTCCCCCC--TTTCCSCCEEECS
T ss_pred             ccchHhhhccCCCcCcCCC--chhCcChhhCcCC
Confidence            3444444433332223443  4455555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=2.1e-17  Score=159.50  Aligned_cols=111  Identities=23%  Similarity=0.313  Sum_probs=84.1

Q ss_pred             CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929          481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN  560 (790)
Q Consensus       481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  560 (790)
                      ++|++|++++|.+++..+..|..+++|++|++++|+++.+.+..|..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence            57788888888887666666777888888888888888776667778888888888888877 44444445678888888


Q ss_pred             cCCCcccccCCccccCCCCCcEEEccCCcccc
Q 047929          561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSG  592 (790)
Q Consensus       561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~  592 (790)
                      +++|++++..+..+..+++|+.|++++|.+++
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence            88888887666667777778877777777653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=4.4e-17  Score=179.38  Aligned_cols=94  Identities=32%  Similarity=0.476  Sum_probs=45.0

Q ss_pred             CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929          481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN  560 (790)
Q Consensus       481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  560 (790)
                      ++|+.|++++|.++ .+|   ..+++|+.|++++|+++++ |. +..  +|+.|++++|.+.+ +|.    .+++|++|+
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~  146 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYIN  146 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEE
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEe
Confidence            45555555555555 333   2245555555555555542 22 322  55555555555543 333    244555555


Q ss_pred             cCCCcccccCCccccCCCCCcEEEccCCccc
Q 047929          561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLS  591 (790)
Q Consensus       561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~  591 (790)
                      +++|++++ +|.   .+++|+.|++++|.++
T Consensus       147 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          147 ADNNQLTM-LPE---LPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             CCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence            55555543 222   2344555555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=1.4e-17  Score=161.75  Aligned_cols=178  Identities=20%  Similarity=0.229  Sum_probs=120.3

Q ss_pred             EEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCcEEEccCCcccccCCcchhccccccccCCcc
Q 047929          533 ALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHH  611 (790)
Q Consensus       533 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~  611 (790)
                      .+++++|.+. .+|..+   .+.+++|++++|++++..+ ..|..+++|+.|++++|.+++..+..+.++++        
T Consensus        15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~--------   82 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG--------   82 (220)
T ss_dssp             EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT--------
T ss_pred             EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC--------
Confidence            4555555544 344432   2345666666666665533 33566677777777777666554444444333        


Q ss_pred             ccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCcccc
Q 047929          612 QVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIG  691 (790)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  691 (790)
                                                          |++|+|++|.+.+..+..|..+++|++|++++|.+++..|..|.
T Consensus        83 ------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  126 (220)
T 2v70_A           83 ------------------------------------VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI  126 (220)
T ss_dssp             ------------------------------------CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST
T ss_pred             ------------------------------------CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC
Confidence                                                34677777777766666688889999999999999888888899


Q ss_pred             CCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcCCccCCc-cccCCcccCCCC
Q 047929          692 NMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGAS-SITGNDLCGAPL  758 (790)
Q Consensus       692 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l-~~~~n~l~~~~~  758 (790)
                      .+++|++|++++|++.+..|..|..+++|+.|++++|++.+..+......-++.. ...++..|..|.
T Consensus       127 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~  194 (220)
T 2v70_A          127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPY  194 (220)
T ss_dssp             TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESG
T ss_pred             CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCCh
Confidence            9999999999999999888889999999999999999988765532221111111 134556676664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=3e-16  Score=153.36  Aligned_cols=167  Identities=20%  Similarity=0.249  Sum_probs=114.4

Q ss_pred             CCCCCCCCCCCCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEe
Q 047929           23 NHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLN  102 (790)
Q Consensus        23 ~~~~~w~~~~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~  102 (790)
                      +....|..++..|.|.++.|.+            +.++ .+|..+.  ++|++|+|++|.+.+. .|..+..+++|++|+
T Consensus         7 ~~~~~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~   70 (229)
T 3e6j_A            7 HHHSAACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKELY   70 (229)
T ss_dssp             ----CCCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             chhhccCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEEE
Confidence            4455666658899999999963            2232 4444333  7788888888888765 567777888888888


Q ss_pred             CCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCc
Q 047929          103 LSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC  182 (790)
Q Consensus       103 Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  182 (790)
                      +++|.+....+..+..+++|++|++++|.                                                   
T Consensus        71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~---------------------------------------------------   99 (229)
T 3e6j_A           71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQ---------------------------------------------------   99 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC---------------------------------------------------
T ss_pred             CCCCCCCCcChhhcccCCCcCEEECCCCc---------------------------------------------------
Confidence            88888766444555667777777666553                                                   


Q ss_pred             cccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCc
Q 047929          183 KLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNS  259 (790)
Q Consensus       183 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~  259 (790)
                       +..+++..|..+++|++|++++|.+.  .+|..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+..
T Consensus       100 -l~~l~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          100 -LTVLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             -CCccChhHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence             33444555667777777777777774  567777777788888888887776555667777778888877777653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=1.5e-16  Score=154.44  Aligned_cols=153  Identities=18%  Similarity=0.245  Sum_probs=116.5

Q ss_pred             cEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCcc
Q 047929          532 VALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHH  611 (790)
Q Consensus       532 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~  611 (790)
                      +.++++++.+. .+|..+   .++++.|++++|++++..+..|..+++|+.|++++|.+.+..|..+.++++        
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~--------   81 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS--------   81 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS--------
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC--------
Confidence            34555555554 455433   256777777777777666667777778888888888777666666655444        


Q ss_pred             ccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCcccc
Q 047929          612 QVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIG  691 (790)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  691 (790)
                                                          |++|+|++|.+....+..|..+++|++|+|++|.+++..|..|.
T Consensus        82 ------------------------------------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~  125 (220)
T 2v9t_B           82 ------------------------------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ  125 (220)
T ss_dssp             ------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ------------------------------------CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence                                                35788888888755555678889999999999999888888899


Q ss_pred             CCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccc
Q 047929          692 NMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG  732 (790)
Q Consensus       692 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  732 (790)
                      .+++|++|++++|++.+..+..|..+++|++|++++|++..
T Consensus       126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99999999999999998777788889999999999998865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=2.6e-16  Score=159.98  Aligned_cols=172  Identities=24%  Similarity=0.281  Sum_probs=104.9

Q ss_pred             CcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCC
Q 047929           67 LVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPS  146 (790)
Q Consensus        67 l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~  146 (790)
                      +.++++|++|++++|.+..  ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+...    .      
T Consensus        42 ~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~----~------  106 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDL----S------  106 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCG----G------
T ss_pred             hhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCC----h------
Confidence            3466777777777777763  33 36667777777777777776 333 77777777777777654321    1      


Q ss_pred             CCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEE
Q 047929          147 LLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL  226 (790)
Q Consensus       147 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L  226 (790)
                                          .+..+++|++|++++|.+..+  ..+..+++|++|++++|.+.+  + ..+..+++|++|
T Consensus       107 --------------------~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L  161 (291)
T 1h6t_A          107 --------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTL  161 (291)
T ss_dssp             --------------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEE
T ss_pred             --------------------hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEE
Confidence                                244455555555555555443  235556666666666666643  2 345566666666


Q ss_pred             EccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccc
Q 047929          227 DLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ  282 (790)
Q Consensus       227 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  282 (790)
                      ++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|+.|++++|++.
T Consensus       162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEE
T ss_pred             EccCCccccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCccc
Confidence            666666664332  66666677777766666553  23666666666666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.68  E-value=3.4e-16  Score=159.11  Aligned_cols=170  Identities=20%  Similarity=0.309  Sum_probs=100.7

Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEE
Q 047929          504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQIL  583 (790)
Q Consensus       504 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  583 (790)
                      +++|+.|++++|.+...  ..+..+++|+.|++++|.+.+ ++.  ...+++|++|++++|++++.  ..+..+++|+.|
T Consensus        45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred             cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence            44455555555544433  124445555555555555542 222  22455555566655555532  225566666666


Q ss_pred             EccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCC
Q 047929          584 DVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIP  663 (790)
Q Consensus       584 ~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  663 (790)
                      ++++|.+.+.  ..+..                                            ++.|+.|++++|.+.+.  
T Consensus       118 ~L~~n~i~~~--~~l~~--------------------------------------------l~~L~~L~l~~n~l~~~--  149 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVH--------------------------------------------LPQLESLYLGNNKITDI--  149 (291)
T ss_dssp             ECTTSCCCCC--GGGGG--------------------------------------------CTTCCEEECCSSCCCCC--
T ss_pred             ECCCCcCCCC--hhhcC--------------------------------------------CCCCCEEEccCCcCCcc--
Confidence            6666665531  11221                                            22345666676666643  


Q ss_pred             cccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccc
Q 047929          664 MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG  732 (790)
Q Consensus       664 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  732 (790)
                      ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.+.. +| .+..+++|+.|++++|++..
T Consensus       150 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            456777888888888888775443  7778888888888888875 33 37778888888888888765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=4.3e-16  Score=152.31  Aligned_cols=155  Identities=20%  Similarity=0.251  Sum_probs=119.4

Q ss_pred             cEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCcc
Q 047929          532 VALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHH  611 (790)
Q Consensus       532 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~  611 (790)
                      +.++++++.+. .+|..+   .++|++|++++|++++..+..+..+++|+.|++++|.+....+..+..+++        
T Consensus        22 ~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~--------   89 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ--------   89 (229)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT--------
T ss_pred             CEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC--------
Confidence            45566655554 555443   367778888888887777777778888888888888876444344444333        


Q ss_pred             ccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCcccc
Q 047929          612 QVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIG  691 (790)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  691 (790)
                                                          |+.|+|++|.+.+..+..+..+++|++|++++|.++ .+|..+.
T Consensus        90 ------------------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  132 (229)
T 3e6j_A           90 ------------------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE  132 (229)
T ss_dssp             ------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred             ------------------------------------cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc
Confidence                                                457888888888666666788999999999999998 7788889


Q ss_pred             CCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCC
Q 047929          692 NMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIP  735 (790)
Q Consensus       692 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  735 (790)
                      .+++|++|++++|++....+..+..+++|+.|++++|++.+..+
T Consensus       133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99999999999999997777788999999999999999987665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=2.9e-16  Score=175.11  Aligned_cols=186  Identities=24%  Similarity=0.278  Sum_probs=108.2

Q ss_pred             EEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCC
Q 047929           51 ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGS  130 (790)
Q Consensus        51 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~  130 (790)
                      .+.+....+.+..  .+..+++|+.|++++|.+..  ++ .+..+++|++|+|++|.+.+ ++. +..+++|++|+|++|
T Consensus        25 ~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           25 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSS
T ss_pred             HHhccCCCccccc--chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCC
Confidence            3444555544332  24567777778888777763  33 46777888888888887776 333 777777777777777


Q ss_pred             cccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCC
Q 047929          131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGK  210 (790)
Q Consensus       131 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~  210 (790)
                      .+...    ..+.                          .+++|++|++++|.+..+  ..+..+++|+.|+|++|.+.+
T Consensus        98 ~l~~l----~~l~--------------------------~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  145 (605)
T 1m9s_A           98 KIKDL----SSLK--------------------------DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD  145 (605)
T ss_dssp             CCCCC----TTST--------------------------TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCCCC----hhhc--------------------------cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC
Confidence            64421    2233                          444444444444444443  234455555666666655533


Q ss_pred             CCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccc
Q 047929          211 TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ  282 (790)
Q Consensus       211 ~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  282 (790)
                        + ..+..+++|+.|+|++|.+.+..|  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|++.
T Consensus       146 --l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          146 --I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             --C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             --c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence              2 345556666666666666554333  55666666666666666543  24556666666666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.66  E-value=1e-15  Score=148.47  Aligned_cols=155  Identities=19%  Similarity=0.257  Sum_probs=102.0

Q ss_pred             cEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCC
Q 047929          484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS  563 (790)
Q Consensus       484 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~  563 (790)
                      +.+++++|.++ .+|..+.  +.+++|++++|.+++..                        +...+..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~------------------------~~~~~~~l~~L~~L~L~~   66 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLE------------------------ATGIFKKLPQLRKINFSN   66 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEEC------------------------CCCCGGGCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccC------------------------chhhhccCCCCCEEECCC
Confidence            35666666665 2443332  34455555555555442                        222223455666666666


Q ss_pred             CcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhh
Q 047929          564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNS  643 (790)
Q Consensus       564 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  643 (790)
                      |++++..+..|..+++|++|++++|.+++..|..+.++++                                        
T Consensus        67 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~----------------------------------------  106 (220)
T 2v70_A           67 NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES----------------------------------------  106 (220)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS----------------------------------------
T ss_pred             CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC----------------------------------------
Confidence            6666555556666777777777777766554444444333                                        


Q ss_pred             cccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccc
Q 047929          644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGK  709 (790)
Q Consensus       644 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  709 (790)
                          |++|+|++|.+.+..|..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++...
T Consensus       107 ----L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          107 ----LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             ----CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ----CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence                35677777777766677788888999999999999888788888899999999999988754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=4.3e-16  Score=163.94  Aligned_cols=113  Identities=20%  Similarity=0.230  Sum_probs=78.7

Q ss_pred             cEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCcccc-CCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcC
Q 047929          484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFE-NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLR  562 (790)
Q Consensus       484 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  562 (790)
                      +.++++++.++ .+|..+.  +.++.|++++|+++.+.+..+. .+++|+.|++++|.+.+..+..+ ..+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc-cCCCCCCEEECC
Confidence            57888888887 4565443  5688888888888877777776 77888888888887774333333 467777777777


Q ss_pred             CCcccccCCccccCCCCCcEEEccCCcccccCCcchhc
Q 047929          563 SNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN  600 (790)
Q Consensus       563 ~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~  600 (790)
                      +|++++..+..|..+++|+.|++++|.+.+..|..+.+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~  134 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED  134 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC
Confidence            77777666666777777777777777766444444433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=1.2e-15  Score=170.17  Aligned_cols=171  Identities=20%  Similarity=0.298  Sum_probs=93.2

Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcE
Q 047929          503 TLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQI  582 (790)
Q Consensus       503 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  582 (790)
                      .+++|+.|++++|.+....  .+..+++|+.|+|++|.+.+..+   +..+++|+.|+|++|++.+.  ..+..+++|+.
T Consensus        41 ~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~  113 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS  113 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred             cCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence            3444555555555544331  34455555555555555543222   22455555555555555532  24555666666


Q ss_pred             EEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCC
Q 047929          583 LDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEI  662 (790)
Q Consensus       583 L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  662 (790)
                      |+|++|.+.+. + .+..                                            ++.|+.|+|++|.+.+. 
T Consensus       114 L~Ls~N~l~~l-~-~l~~--------------------------------------------l~~L~~L~Ls~N~l~~l-  146 (605)
T 1m9s_A          114 LSLEHNGISDI-N-GLVH--------------------------------------------LPQLESLYLGNNKITDI-  146 (605)
T ss_dssp             EECTTSCCCCC-G-GGGG--------------------------------------------CTTCSEEECCSSCCCCC-
T ss_pred             EEecCCCCCCC-c-cccC--------------------------------------------CCccCEEECCCCccCCc-
Confidence            66666655531 1 1221                                            22345566666666543 


Q ss_pred             CcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccc
Q 047929          663 PMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG  732 (790)
Q Consensus       663 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  732 (790)
                       ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|++.+.  ..+..+++|+.|++++|++.+
T Consensus       147 -~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          147 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             -hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence             445666666677776666664444  66666777777777766643  246666667777777776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.64  E-value=9.2e-16  Score=161.44  Aligned_cols=180  Identities=21%  Similarity=0.201  Sum_probs=141.1

Q ss_pred             CCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCC-CCCCCCEEEccCCcccccCCcc
Q 047929          446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMG-TLTSLRSLNLRSNRLSGIIPVP  524 (790)
Q Consensus       446 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~  524 (790)
                      -+.++++++.+..++              ..+  .+.++.|++++|.+++..+..+. .+++|+.|++++|+++.+.+..
T Consensus        20 ~~~l~c~~~~l~~iP--------------~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~   83 (361)
T 2xot_A           20 SNILSCSKQQLPNVP--------------QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA   83 (361)
T ss_dssp             TTEEECCSSCCSSCC--------------SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT
T ss_pred             CCEEEeCCCCcCccC--------------ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh
Confidence            478999999887643              222  24689999999999988787787 8999999999999999998889


Q ss_pred             ccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccc
Q 047929          525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAM  604 (790)
Q Consensus       525 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L  604 (790)
                      |..+++|+.|++++|.+. .++...+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..+   
T Consensus        84 ~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~---  159 (361)
T 2xot_A           84 FVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG---  159 (361)
T ss_dssp             TTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----
T ss_pred             ccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc---
Confidence            999999999999999998 4555445689999999999999998888899999999999999999884333222111   


Q ss_pred             cccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCC--CCEEeCCCCcC
Q 047929          605 ATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKG--LQSLNLSHNSF  682 (790)
Q Consensus       605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l  682 (790)
                                                            ..++.|+.|+|++|.+.+..+..+..++.  ++.|++++|++
T Consensus       160 --------------------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          160 --------------------------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             --------------------------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence                                                  11344567888888887544456666666  37788888876


Q ss_pred             C
Q 047929          683 I  683 (790)
Q Consensus       683 ~  683 (790)
                      .
T Consensus       202 ~  202 (361)
T 2xot_A          202 E  202 (361)
T ss_dssp             E
T ss_pred             c
Confidence            5

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.64  E-value=5.3e-15  Score=143.45  Aligned_cols=76  Identities=22%  Similarity=0.311  Sum_probs=45.5

Q ss_pred             EEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCc
Q 047929           52 LNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY  131 (790)
Q Consensus        52 L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~  131 (790)
                      ++.+++.++ .+|..+.  ++|+.|++++|.+... .+..|..+++|++|++++|.+++..|.+|..+++|++|++++|.
T Consensus        16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            344445554 3444333  5677777777776643 33456666777777777776666556666666666666666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.62  E-value=1.4e-15  Score=145.06  Aligned_cols=78  Identities=19%  Similarity=0.296  Sum_probs=45.6

Q ss_pred             EEEccCccCCCCCCcccccCCCCCEEeCCCCc-CCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCC
Q 047929          650 SIDISMNNFSGEIPMEVTNLKGLQSLNLSHNS-FIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDN  728 (790)
Q Consensus       650 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n  728 (790)
                      +|++++|.+.+..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|++.. ++ .+..+++|++|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence            44444444444444455566666666666666 43 344 46666777777777777764 33 5666777777777777


Q ss_pred             ccc
Q 047929          729 KLV  731 (790)
Q Consensus       729 ~l~  731 (790)
                      ++.
T Consensus       192 ~i~  194 (197)
T 4ezg_A          192 TIG  194 (197)
T ss_dssp             ---
T ss_pred             ccC
Confidence            654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=4.5e-15  Score=141.43  Aligned_cols=153  Identities=16%  Similarity=0.188  Sum_probs=124.2

Q ss_pred             CcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccC
Q 047929          418 PPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSI  497 (790)
Q Consensus       418 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  497 (790)
                      .+++++.|++++|.+. .++ .+..+++|++|++++|.+...               ..+..+++|++|++++|.+++..
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~---------------~~l~~l~~L~~L~l~~n~l~~~~  104 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY---------------NPISGLSNLERLRIMGKDVTSDK  104 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC---------------GGGTTCTTCCEEEEECTTCBGGG
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc---------------hhhhcCCCCCEEEeECCccCccc
Confidence            3456777777777776 344 578889999999999976543               24577899999999999999777


Q ss_pred             CcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCC
Q 047929          498 PISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHL  577 (790)
Q Consensus       498 ~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l  577 (790)
                      +..+..+++|++|++++|++++..+..+..+++|++|++++|.....+| . ...+++|++|++++|++++. + .+..+
T Consensus       105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~-l~~l~~L~~L~l~~n~i~~~-~-~l~~l  180 (197)
T 4ezg_A          105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P-LKTLPELKSLNIQFDGVHDY-R-GIEDF  180 (197)
T ss_dssp             SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G-GGGCSSCCEEECTTBCCCCC-T-TGGGC
T ss_pred             ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h-hcCCCCCCEEECCCCCCcCh-H-HhccC
Confidence            8889999999999999999998778889999999999999998344666 3 34789999999999999864 3 67889


Q ss_pred             CCCcEEEccCCccc
Q 047929          578 SSLQILDVAYNRLS  591 (790)
Q Consensus       578 ~~L~~L~ls~n~l~  591 (790)
                      ++|+.|++++|++.
T Consensus       181 ~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          181 PKLNQLYAFSQTIG  194 (197)
T ss_dssp             SSCCEEEECBC---
T ss_pred             CCCCEEEeeCcccC
Confidence            99999999999875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=2.4e-15  Score=142.53  Aligned_cols=112  Identities=24%  Similarity=0.343  Sum_probs=80.5

Q ss_pred             eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929          648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD  727 (790)
Q Consensus       648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  727 (790)
                      |++|+|++|.+++..|..|..+++|++|++++|.+++..+..|.++++|++|++++|++++..|..+..+++|++|++++
T Consensus        56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            45677777777766677778888888888888888877777788888888888888888888788888888888888888


Q ss_pred             CcccccCCCCCcCCccCCccccCC-cccCCCCC
Q 047929          728 NKLVGKIPSSTQLQSFGASSITGN-DLCGAPLS  759 (790)
Q Consensus       728 n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~~~  759 (790)
                      |++.+..+.......++...+.++ ..|+.|..
T Consensus       136 N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~  168 (192)
T 1w8a_A          136 NPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK  168 (192)
T ss_dssp             CCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT
T ss_pred             CCccCcCcchHHHHHHHHcCCCCCCCCCCCChH
Confidence            888776653322222333334444 55665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=4.9e-18  Score=188.29  Aligned_cols=96  Identities=25%  Similarity=0.342  Sum_probs=74.0

Q ss_pred             eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcccc-CccccCCCCCCEEECc
Q 047929          648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI-PQSMSSLSFLNHLNLS  726 (790)
Q Consensus       648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~  726 (790)
                      |+.|+|++|.+. .+|..++.+++|++|+|++|.+++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|+++
T Consensus       465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence            457888888887 677788888888888888888875 56 7888888888888888888765 8888888888888888


Q ss_pred             CCcccccCCCCCc----CCccCCc
Q 047929          727 DNKLVGKIPSSTQ----LQSFGAS  746 (790)
Q Consensus       727 ~n~l~~~~p~~~~----~~sl~~l  746 (790)
                      +|++.+.+|....    +++|+.|
T Consensus       542 ~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          542 GNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             TSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCcCCCCccHHHHHHHHCcccCcc
Confidence            8888877665433    4445444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=2.6e-17  Score=182.42  Aligned_cols=105  Identities=28%  Similarity=0.297  Sum_probs=48.7

Q ss_pred             CCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEcc
Q 047929          198 LNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLG  277 (790)
Q Consensus       198 L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  277 (790)
                      |++|++++|.+++  +|. +..+++|+.|++++|.+. .+|..++.+++|++|++++|.+++ +| .+..+++|+.|+++
T Consensus       443 L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          443 VRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             CSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             ceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            4444454444422  343 444444555555555444 344444445555555555554443 22 44444555555555


Q ss_pred             Cccccccc-CcccccCCCCCCEEEccCCCCCCC
Q 047929          278 YNRLQGTI-SSIGLENLTFIKTLDLSFNELGQD  309 (790)
Q Consensus       278 ~~~l~~~~-~~~~l~~l~~L~~L~l~~~~~~~~  309 (790)
                      +|.+++.. |.. +..+++|+.|++++|.+.+.
T Consensus       517 ~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          517 NNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             SSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCC
Confidence            55444332 222 44455555555555544443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.58  E-value=1.4e-15  Score=151.96  Aligned_cols=75  Identities=17%  Similarity=0.282  Sum_probs=37.5

Q ss_pred             EEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcC
Q 047929           50 LELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG  129 (790)
Q Consensus        50 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~  129 (790)
                      +.+++.++.+++..  .+..+++|++|++++|.+..  ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++
T Consensus        22 ~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           22 VKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCS
T ss_pred             HHHHhcCCCccccc--chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCC
Confidence            33444455444221  34555555555555555552  23 35555555555555555554 222 55555555555555


Q ss_pred             Cc
Q 047929          130 SY  131 (790)
Q Consensus       130 ~~  131 (790)
                      |.
T Consensus        95 N~   96 (263)
T 1xeu_A           95 NR   96 (263)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.58  E-value=6.3e-15  Score=147.18  Aligned_cols=171  Identities=20%  Similarity=0.215  Sum_probs=141.5

Q ss_pred             CCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCC
Q 047929           69 DLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLL  148 (790)
Q Consensus        69 ~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L  148 (790)
                      .+.++..++++++.+.+  ++ .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+...+.    +.++++|
T Consensus        17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L   87 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP----LKDLTKL   87 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG----GTTCSSC
T ss_pred             HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh----hccCCCC
Confidence            45667778888888884  44 57789999999999999886 56 68899999999999998765433    7889999


Q ss_pred             cEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEc
Q 047929          149 EHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDL  228 (790)
Q Consensus       149 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l  228 (790)
                      ++|++++|.+...+.    +.. ++|++|++++|.+..++  .+..+++|++|++++|.+++  ++ .+..+++|++|++
T Consensus        88 ~~L~L~~N~l~~l~~----~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L  157 (263)
T 1xeu_A           88 EELSVNRNRLKNLNG----IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDL  157 (263)
T ss_dssp             CEEECCSSCCSCCTT----CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEEC
T ss_pred             CEEECCCCccCCcCc----ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEEC
Confidence            999999999888653    233 89999999999988863  58899999999999999855  44 5888999999999


Q ss_pred             cCCcCCCCCCccCCCCCCCcEEeCCCCcCCcc
Q 047929          229 SSNIFRGPIPDGFKNLTSLRYLDLSYNQFNST  260 (790)
Q Consensus       229 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~  260 (790)
                      ++|.+.+.  ..+..+++|+.|++++|.+...
T Consensus       158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            99999865  5689999999999999988755

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=3.3e-14  Score=131.63  Aligned_cols=133  Identities=22%  Similarity=0.240  Sum_probs=83.7

Q ss_pred             CCCcEEEcCCCccc-ccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeee
Q 047929          554 SRLRILNLRSNKLH-GIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISL  632 (790)
Q Consensus       554 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  632 (790)
                      ++|+.|++++|.++ +.+|..+..+++|+.|++++|.+.+.  ..+..                                
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------------------------------   69 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK--------------------------------   69 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC--------------------------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc--------------------------------
Confidence            55666666666665 34455556666666666666665532  22222                                


Q ss_pred             eeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCC-CccccCCCCCCEEeCcCccCccccC
Q 047929          633 VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKI-PETIGNMRSIESLDLSGNQISGKIP  711 (790)
Q Consensus       633 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p  711 (790)
                                  ++.|++|++++|.+.+.+|..+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..+
T Consensus        70 ------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           70 ------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             ------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             ------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence                        223456666666666556666666777777777777776432 2567777777777777777775444


Q ss_pred             ---ccccCCCCCCEEECcCCcccc
Q 047929          712 ---QSMSSLSFLNHLNLSDNKLVG  732 (790)
Q Consensus       712 ---~~l~~l~~L~~L~l~~n~l~~  732 (790)
                         ..+..+++|++|++++|++..
T Consensus       138 ~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          138 YRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             HHHHHHTTCSSCCEETTEETTSCB
T ss_pred             HHHHHHHhCccCcEecCCCCChhh
Confidence               367777777777777777653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=1.8e-15  Score=173.19  Aligned_cols=220  Identities=18%  Similarity=0.118  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhhcC-CCCCCCCCCC-CCCCCCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeC-----
Q 047929            6 SERVALIKLKQDF-KDPSNHLASW-IGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDL-----   78 (790)
Q Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~w-~~~~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~L-----   78 (790)
                      .++.|++++.... .+.+.....| ...+....|.+..+.  .++++.|+|.++.+.. .+..+.....|+.+++     
T Consensus       132 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~  208 (727)
T 4b8c_D          132 CTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDD  208 (727)
T ss_dssp             CCCHHHHHHHHHHHHHHTTC------------------------------------------------------------
T ss_pred             cchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCc-chhhHhhcCccCcccccCccc
Confidence            3667888888776 3555666778 343556788888776  5789999999988764 3444433333333332     


Q ss_pred             CCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCC
Q 047929           79 SGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDL  158 (790)
Q Consensus        79 s~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  158 (790)
                      +.+.+.  ..++.+..+++|+.|+|++|.+.. +|..+..+++|++|+|++|.+...+   ..++++++|++|++++|.+
T Consensus       209 ~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          209 IENRMV--MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTELP---AEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCSCCC---GGGGGGTTCCEEECTTSCC
T ss_pred             ccccee--cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCcccC---hhhhCCCCCCEEeCcCCcC
Confidence            223333  246778888999999999999885 8877888999999999988766322   3345566666666666665


Q ss_pred             CCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCC-CCcEEEccCCcCCCCC
Q 047929          159 IKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLS-DLVFLDLSSNIFRGPI  237 (790)
Q Consensus       159 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~-~L~~L~l~~~~~~~~~  237 (790)
                      ...+.   .+..+++|++|+|++|.+..++. .|+.+++|++|+|++|.+.+ .+|..+..+. .+..+++++|.+.+.+
T Consensus       283 ~~lp~---~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~~~  357 (727)
T 4b8c_D          283 TSLPA---ELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEIPL  357 (727)
T ss_dssp             SSCCS---SGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred             CccCh---hhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCcccCcC
Confidence            54332   45556666666666666654433 35666666666666666544 3344333221 1122455555555544


Q ss_pred             Cc
Q 047929          238 PD  239 (790)
Q Consensus       238 p~  239 (790)
                      |.
T Consensus       358 p~  359 (727)
T 4b8c_D          358 PH  359 (727)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=3.7e-15  Score=170.74  Aligned_cols=143  Identities=24%  Similarity=0.272  Sum_probs=82.6

Q ss_pred             CCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhc
Q 047929          521 IPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN  600 (790)
Q Consensus       521 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~  600 (790)
                      .+..+..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..|..+++|+.|+|++|.++ .+|..+.+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            3455556666666666666665 5555554 5666666666666666 45566666666666666666666 55555544


Q ss_pred             cccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCC
Q 047929          601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHN  680 (790)
Q Consensus       601 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  680 (790)
                      +++|                                            ++|+|++|.+. .+|..|+.+++|++|+|++|
T Consensus       292 l~~L--------------------------------------------~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          292 CFQL--------------------------------------------KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             GTTC--------------------------------------------SEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             CCCC--------------------------------------------CEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence            4433                                            46666666665 55666666666777777777


Q ss_pred             cCCcCCCccccCCC-CCCEEeCcCccCccccCc
Q 047929          681 SFIGKIPETIGNMR-SIESLDLSGNQISGKIPQ  712 (790)
Q Consensus       681 ~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~  712 (790)
                      .+++.+|..+..+. .+..|++++|.+.+.+|.
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            66666665554331 122355666666655554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=2.3e-14  Score=148.79  Aligned_cols=285  Identities=13%  Similarity=0.074  Sum_probs=147.6

Q ss_pred             CCCCCEEEccCCCCCCCcchhhhhhhccc-cCCCCEEEccCCccc--cccchhhccCCCCcEEEccCcccCCCCCcCcCC
Q 047929          293 LTFIKTLDLSFNELGQDISEILDIISACA-AFELESLFLRGCKIS--GQLTNQLGLFKNLHTLALSDNSVSGPLPPASGE  369 (790)
Q Consensus       293 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~  369 (790)
                      ++++++|.++++--.    ....  .+.. +++|+.|++++|.+.  .....   .++.+..+.+..+.+   .+.+|.+
T Consensus        24 ~~~l~~L~l~g~i~~----~~~~--~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~   91 (329)
T 3sb4_A           24 ANSITHLTLTGKLNA----EDFR--HLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSN   91 (329)
T ss_dssp             HHHCSEEEEEEEECH----HHHH--HHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEE
T ss_pred             hCceeEEEEeccccH----HHHH--HHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcc
Confidence            456777777654211    1011  2222 567777777777766  11111   112233344444322   2344555


Q ss_pred             --------CCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCC----CCCCCC
Q 047929          370 --------LSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCH----LGPHFP  437 (790)
Q Consensus       370 --------l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~  437 (790)
                              +++|+.|++.+ .++.. +...|.++++|+.+.+..+.+.......|..+.++..+......    ......
T Consensus        92 ~~~~~~~g~~~L~~l~L~~-~i~~I-~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~  169 (329)
T 3sb4_A           92 VVNGVTKGKQTLEKVILSE-KIKNI-EDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH  169 (329)
T ss_dssp             EETTEEEECTTCCC-CBCT-TCCEE-CTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred             cccccccccCCCcEEECCc-cccch-hHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc
Confidence                    67777777766 54433 33356666677777666666655555566655555555544321    111122


Q ss_pred             cccccCCCCC-EEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCc
Q 047929          438 SWLHSQKHLS-KLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNR  516 (790)
Q Consensus       438 ~~~~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  516 (790)
                      ..|..+..|+ .+.+.....  +....+          .......+++.+.+.++-...........+++|+.+++++|+
T Consensus       170 ~~f~~~~~L~~~i~~~~~~~--l~~~~~----------~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~  237 (329)
T 3sb4_A          170 FAFIEGEPLETTIQVGAMGK--LEDEIM----------KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN  237 (329)
T ss_dssp             SCEEESCCCEEEEEECTTCC--HHHHHH----------HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC
T ss_pred             cccccccccceeEEecCCCc--HHHHHh----------hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC
Confidence            2344455555 333332210  000000          000122344444444432111100001125677777777777


Q ss_pred             ccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCc-EEEcCCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 047929          517 LSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLR-ILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP  595 (790)
Q Consensus       517 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p  595 (790)
                      ++.+....|.+|++|+.+++.+| +. .++...+..+++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.+...-+
T Consensus       238 i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          238 ATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             cceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence            77666667777777777777766 33 55655556677777 777766 5655666677777777777777777765555


Q ss_pred             cchhccccccc
Q 047929          596 KCINNFTAMAT  606 (790)
Q Consensus       596 ~~l~~l~~L~~  606 (790)
                      ..|.++++|+.
T Consensus       315 ~aF~~~~~L~~  325 (329)
T 3sb4_A          315 ELFGNGVPSKL  325 (329)
T ss_dssp             TTTCTTCCCCE
T ss_pred             hhhcCCcchhh
Confidence            56666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.50  E-value=4.8e-14  Score=133.48  Aligned_cols=132  Identities=21%  Similarity=0.280  Sum_probs=89.6

Q ss_pred             cEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCc-cccCCCCCcEEEccCCcccccCCcchhccccccccCCc
Q 047929          532 VALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPI-QICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSH  610 (790)
Q Consensus       532 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~  610 (790)
                      +.+++++|.+. .+|..+.   +++++|++++|++++..+. .+..+++|++|++++|.+++..|..+.++++       
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-------   79 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-------   79 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT-------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc-------
Confidence            34555555553 4454332   3566666666666655443 3566667777777777766655555544443       


Q ss_pred             cccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccc
Q 047929          611 HQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETI  690 (790)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  690 (790)
                                                           |++|+|++|++.+..+..|..+++|++|++++|++++..|..|
T Consensus        80 -------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  122 (192)
T 1w8a_A           80 -------------------------------------IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             -------------------------------------CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred             -------------------------------------CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence                                                 3467777777776666667888888999999998888888888


Q ss_pred             cCCCCCCEEeCcCccCccccC
Q 047929          691 GNMRSIESLDLSGNQISGKIP  711 (790)
Q Consensus       691 ~~l~~L~~L~l~~n~l~~~~p  711 (790)
                      ..+++|++|++++|++.+..+
T Consensus       123 ~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          123 EHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TTCTTCCEEECTTCCBCCSGG
T ss_pred             hcCCCCCEEEeCCCCccCcCc
Confidence            888999999999998876543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.49  E-value=2.7e-13  Score=128.17  Aligned_cols=129  Identities=28%  Similarity=0.344  Sum_probs=98.6

Q ss_pred             cEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeecc
Q 047929          557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKG  636 (790)
Q Consensus       557 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  636 (790)
                      +.++++++.++. +|..+  .++|+.|++++|.++ .+|..+.+++.                                 
T Consensus        13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~---------------------------------   55 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKH---------------------------------   55 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTT---------------------------------
T ss_pred             CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccC---------------------------------
Confidence            456666666663 34333  256777777777776 45544444333                                 


Q ss_pred             chhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccC
Q 047929          637 FMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSS  716 (790)
Q Consensus       637 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~  716 (790)
                                 |+.|+|++|.+++..+..|..+++|++|+|++|.++...|..|.++++|+.|++++|++....+..|..
T Consensus        56 -----------L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~  124 (193)
T 2wfh_A           56 -----------LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND  124 (193)
T ss_dssp             -----------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             -----------CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence                       457888888887666777888999999999999999888888999999999999999999766777889


Q ss_pred             CCCCCEEECcCCccccc
Q 047929          717 LSFLNHLNLSDNKLVGK  733 (790)
Q Consensus       717 l~~L~~L~l~~n~l~~~  733 (790)
                      +++|+.|++++|++...
T Consensus       125 l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          125 LSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CTTCCEEECCSSCEECS
T ss_pred             CccccEEEeCCCCeecC
Confidence            99999999999998753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.48  E-value=4.8e-14  Score=127.61  Aligned_cols=129  Identities=22%  Similarity=0.251  Sum_probs=83.6

Q ss_pred             CCCCcEEEcCCCccc-ccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeee
Q 047929          553 FSRLRILNLRSNKLH-GIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEIS  631 (790)
Q Consensus       553 ~~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  631 (790)
                      .++|+.|++++|.++ +..|..+..+++|+.|++++|.+.+.  ..+..                               
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   62 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-------------------------------   62 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence            356777777777766 45566666777777777777766533  22222                               


Q ss_pred             eeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcC-CCccccCCCCCCEEeCcCccCcccc
Q 047929          632 LVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGK-IPETIGNMRSIESLDLSGNQISGKI  710 (790)
Q Consensus       632 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~  710 (790)
                                   ++.|++|++++|.+.+.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++.+..
T Consensus        63 -------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           63 -------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             -------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             -------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence                         22345677777777655666666677777777777777643 2356777777777777777777554


Q ss_pred             C---ccccCCCCCCEEECcC
Q 047929          711 P---QSMSSLSFLNHLNLSD  727 (790)
Q Consensus       711 p---~~l~~l~~L~~L~l~~  727 (790)
                      +   ..+..+++|+.|++++
T Consensus       130 ~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          130 DYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             THHHHHHHHCTTCCEETTBC
T ss_pred             HHHHHHHHHCCCcccccCCC
Confidence            4   4667777777777653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=1.3e-13  Score=127.65  Aligned_cols=138  Identities=17%  Similarity=0.200  Sum_probs=116.0

Q ss_pred             CCCCCcEEEccCCccc-ccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEcc
Q 047929          576 HLSSLQILDVAYNRLS-GSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDIS  654 (790)
Q Consensus       576 ~l~~L~~L~ls~n~l~-~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  654 (790)
                      .+++|+.|++++|.+. +.+|..+..+++                                            |+.|+++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~--------------------------------------------L~~L~l~   57 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVN--------------------------------------------LEFLSLI   57 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGG--------------------------------------------CCEEEEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCC--------------------------------------------CCEEeCc
Confidence            4578999999999997 667766555444                                            5689999


Q ss_pred             CccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcccc-CccccCCCCCCEEECcCCccccc
Q 047929          655 MNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI-PQSMSSLSFLNHLNLSDNKLVGK  733 (790)
Q Consensus       655 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~  733 (790)
                      +|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|++.+.
T Consensus        58 ~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A           58 NVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             SSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred             CCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence            9999865  77899999999999999999878888888999999999999998643 27899999999999999999876


Q ss_pred             CC----CCCcCCccCCccccCCcccCCCCC
Q 047929          734 IP----SSTQLQSFGASSITGNDLCGAPLS  759 (790)
Q Consensus       734 ~p----~~~~~~sl~~l~~~~n~l~~~~~~  759 (790)
                      .+    ....+++|+.+++.+|.+...|..
T Consensus       136 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          136 NDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             TTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             HHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            65    345688999999999877666643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=1.2e-13  Score=143.47  Aligned_cols=206  Identities=12%  Similarity=0.100  Sum_probs=116.6

Q ss_pred             CCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCccc---ccCchhhhhcCCCC
Q 047929          480 WPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFV---GNIPTWMGERFSRL  556 (790)
Q Consensus       480 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~~~~~~~~L  556 (790)
                      +++|+.+++.+ .++...+..|..|++|+.+++.+|.+..+.+..|.++.++..+........   ..+....+..+..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            88889998888 777677778888899999999988888888888888887777776653221   11222222244455


Q ss_pred             c-EEEcCCCcc-cccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeee
Q 047929          557 R-ILNLRSNKL-HGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVM  634 (790)
Q Consensus       557 ~-~L~L~~n~~-~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  634 (790)
                      + .+.+..... .......-....++..+.+.++-...    .+..                                  
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~----~~~~----------------------------------  220 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNA----DFKL----------------------------------  220 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHH----HHHH----------------------------------
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHH----HHHH----------------------------------
Confidence            5 444433211 10000001123344555554431110    0000                                  


Q ss_pred             ccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCC-EEeCcCccCccccCcc
Q 047929          635 KGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIE-SLDLSGNQISGKIPQS  713 (790)
Q Consensus       635 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~l~~n~l~~~~p~~  713 (790)
                            ....++.|+.++|++|++....+..|.++++|++|++.+| ++...+.+|.++++|+ .+++.+ .+....+.+
T Consensus       221 ------l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a  292 (329)
T 3sb4_A          221 ------IRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA  292 (329)
T ss_dssp             ------HHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTT
T ss_pred             ------HHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhh
Confidence                  0011234556666666666444445666666666666665 5545556666666666 666666 555455566


Q ss_pred             ccCCCCCCEEECcCCcccc
Q 047929          714 MSSLSFLNHLNLSDNKLVG  732 (790)
Q Consensus       714 l~~l~~L~~L~l~~n~l~~  732 (790)
                      |..+++|+.+++++|.+..
T Consensus       293 F~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          293 FMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             TTTCTTEEEEEECSSCCCE
T ss_pred             hhCCccCCEEEeCCCccCc
Confidence            6666666666666666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.46  E-value=4.4e-13  Score=125.21  Aligned_cols=89  Identities=18%  Similarity=0.187  Sum_probs=70.7

Q ss_pred             eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929          648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD  727 (790)
Q Consensus       648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  727 (790)
                      |++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            34666666766655555667888899999999998877777788889999999999999876666678889999999999


Q ss_pred             CcccccCCC
Q 047929          728 NKLVGKIPS  736 (790)
Q Consensus       728 n~l~~~~p~  736 (790)
                      |++.+..|.
T Consensus       134 N~~~~~~~~  142 (177)
T 2o6r_A          134 NPWDCSCPR  142 (177)
T ss_dssp             SCBCCCHHH
T ss_pred             CCeeccCcc
Confidence            998876663

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.43  E-value=5.2e-12  Score=133.62  Aligned_cols=201  Identities=13%  Similarity=0.129  Sum_probs=112.2

Q ss_pred             ccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCC
Q 047929          476 CWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR  555 (790)
Q Consensus       476 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  555 (790)
                      .|..+++|+.+++.+|.++......|. +.+|+.+.+.++ +..+....|.+|++|+.+++.++ +. .++...+.. .+
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~  249 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SG  249 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CC
T ss_pred             HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CC
Confidence            455667777777777766655555555 467777777643 66666677777777777777764 32 444444434 66


Q ss_pred             CcEEEcCCCcccccCCccccCCCCCcEEEccCCccc-----ccCCcchhccccccccCCccccceeecccccccceeeee
Q 047929          556 LRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS-----GSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEI  630 (790)
Q Consensus       556 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~-----~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~  630 (790)
                      |+.+.+. +.++.+...+|.++++|+.+++.++.+.     ...+.+|.++++                           
T Consensus       250 L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~---------------------------  301 (401)
T 4fdw_A          250 ITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK---------------------------  301 (401)
T ss_dssp             CSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT---------------------------
T ss_pred             ccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc---------------------------
Confidence            7777773 3455555667777777877777766543     111122222222                           


Q ss_pred             eeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcccc
Q 047929          631 SLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI  710 (790)
Q Consensus       631 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  710 (790)
                                       |+.++|. +.+...-...|.++++|+.+.|..+ ++...+.+|.++ +|+.+++++|.+....
T Consensus       302 -----------------L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          302 -----------------LARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             -----------------CCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             -----------------CCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence                             2334443 2233222344555555666655433 443444555555 5666666666555444


Q ss_pred             CccccCCC-CCCEEECcCCc
Q 047929          711 PQSMSSLS-FLNHLNLSDNK  729 (790)
Q Consensus       711 p~~l~~l~-~L~~L~l~~n~  729 (790)
                      +..|..++ .++.|.+..+.
T Consensus       362 ~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          362 EKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CSSCCCSCTTCCEEEECGGG
T ss_pred             cccccCCCCCccEEEeCHHH
Confidence            45555543 45555555444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.41  E-value=2e-11  Score=129.15  Aligned_cols=223  Identities=12%  Similarity=0.120  Sum_probs=136.0

Q ss_pred             CCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeC
Q 047929          173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDL  252 (790)
Q Consensus       173 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  252 (790)
                      +|+.+.+.. .+..+...+|.++++|+.+++.++.+  ..++.......+|+.+.+..+ +......+|.++++|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l--~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI--TKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC--SEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc--eEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            466666654 56666667777777777777777666  345555555677777777644 55455567777777777777


Q ss_pred             CCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccC
Q 047929          253 SYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRG  332 (790)
Q Consensus       253 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  332 (790)
                      ..+ +..+...+|.. .+|+.+.+.+ .+. .++..+|.++++|+.+.+.++.+............+..+++|+.+.+.+
T Consensus       234 ~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          234 PEN-VSTIGQEAFRE-SGITTVKLPN-GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             CTT-CCEECTTTTTT-CCCSEEEEET-TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             CCC-ccCcccccccc-CCccEEEeCC-Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            653 55555566666 6777777743 333 4555557777778887777765531110000011445566777777763


Q ss_pred             CccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhcccc-ccceeecCCCc
Q 047929          333 CKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLT-ELAFFYANGNS  407 (790)
Q Consensus       333 ~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~l~l~~~~  407 (790)
                       .+......+|.++.+|+.+.+..+ +......+|.++ +|+.+++.+|........ .|.+++ .+..+++..+.
T Consensus       310 -~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~-~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          310 -SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK-VWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             -TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS-SCCCSCTTCCEEEECGGG
T ss_pred             -ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc-cccCCCCCccEEEeCHHH
Confidence             355455566777777777777543 544555667777 777777777765543333 344443 45556555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.41  E-value=2.3e-11  Score=129.48  Aligned_cols=331  Identities=14%  Similarity=0.102  Sum_probs=201.4

Q ss_pred             CCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhh
Q 047929          236 PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILD  315 (790)
Q Consensus       236 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  315 (790)
                      .-..+|.++.+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++ .+...++..+++|+.+.+..+ +......   
T Consensus        62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~---  134 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVE---  134 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTT---
T ss_pred             hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecce---
Confidence            3344566666666666643 244445556666666666666543 22 344444666666665544432 1111111   


Q ss_pred             hhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccc
Q 047929          316 IISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNL  395 (790)
Q Consensus       316 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  395 (790)
                        .+... .+....+... .......+|..+++|+.+.+..+. ......+|..+.+|+.+++..+ +. .+....|.++
T Consensus       135 --aF~~~-~~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~  207 (394)
T 4fs7_A          135 --AFKGC-DFKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC  207 (394)
T ss_dssp             --TTTTC-CCSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC
T ss_pred             --eeecc-cccccccCcc-ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccc
Confidence              11111 1222222221 111234457777888888886543 2244556777888888877665 22 2334467777


Q ss_pred             cccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCC
Q 047929          396 TELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPD  475 (790)
Q Consensus       396 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~  475 (790)
                      ..|+.+.+..+...  .........+++.+.+... ........+..+..++.+.+..+... +             ...
T Consensus       208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i-------------~~~  270 (394)
T 4fs7_A          208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-I-------------GGS  270 (394)
T ss_dssp             TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-E-------------CSC
T ss_pred             cccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-e-------------ecc
Confidence            77777776655332  2233444567777777543 22233445778888888888765421 1             123


Q ss_pred             ccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCC
Q 047929          476 CWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR  555 (790)
Q Consensus       476 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  555 (790)
                      .+..+..++.+......+   ....|..+.+|+.+.+.++ +..+....|.+|++|+.+++.++ +. .+....+.++.+
T Consensus       271 ~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~  344 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTS  344 (394)
T ss_dssp             TTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTT
T ss_pred             ccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCC
Confidence            456777888887776543   3346778899999998765 66677788999999999999754 43 566666678899


Q ss_pred             CcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccc
Q 047929          556 LRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMAT  606 (790)
Q Consensus       556 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~  606 (790)
                      |+.+.+..+ ++.+...+|.+|++|+.+++..+- . .+...+.++++|+.
T Consensus       345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred             CCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence            999999776 666777789999999999997652 2 23456667766654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.40  E-value=1e-12  Score=118.85  Aligned_cols=124  Identities=19%  Similarity=0.286  Sum_probs=76.2

Q ss_pred             CCCcEEEccCCccc-ccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEE
Q 047929          481 PDLRVLNLGNNKFT-GSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRIL  559 (790)
Q Consensus       481 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  559 (790)
                      ++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+ ..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCCCEE
Confidence            45666666666665 45555566666666666666666654  456666667777777766665455443 246667777


Q ss_pred             EcCCCccccc-CCccccCCCCCcEEEccCCcccccCC---cchhcccccccc
Q 047929          560 NLRSNKLHGI-FPIQICHLSSLQILDVAYNRLSGSVP---KCINNFTAMATI  607 (790)
Q Consensus       560 ~L~~n~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~l  607 (790)
                      ++++|++++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.+
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  145 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL  145 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence            7777766643 23556666777777777776665444   345555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.39  E-value=2.6e-12  Score=119.95  Aligned_cols=133  Identities=21%  Similarity=0.252  Sum_probs=107.6

Q ss_pred             CCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccc
Q 047929          446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPF  525 (790)
Q Consensus       446 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l  525 (790)
                      .+.++++++.+..++.              .  ..++|+.|++++|.+++..+..|..+++|++|++++|+++.+.+..|
T Consensus         9 ~~~l~~~~~~l~~~p~--------------~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~   72 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT--------------G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF   72 (177)
T ss_dssp             TTEEECCSSCCSSCCT--------------T--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred             CCEEEecCCCCccCCC--------------C--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc
Confidence            5677888777765422              1  23688999999999987666677889999999999999998877788


Q ss_pred             cCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 047929          526 ENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP  595 (790)
Q Consensus       526 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p  595 (790)
                      ..+++|+.|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus        73 ~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           73 DKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCCccCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            89999999999999988 4454444578999999999999987766667889999999999999886544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.39  E-value=1.4e-11  Score=131.15  Aligned_cols=123  Identities=14%  Similarity=0.152  Sum_probs=78.0

Q ss_pred             ccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCccc
Q 047929          439 WLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLS  518 (790)
Q Consensus       439 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  518 (790)
                      .|..+..++.+......+.+                ..+..+.+|+.+.+.++ ++......|..+.+|+.+++.++ ++
T Consensus       271 ~F~~~~~l~~~~~~~~~i~~----------------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~  332 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIVPE----------------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE  332 (394)
T ss_dssp             TTTTCTTCCEEEECSSEECT----------------TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred             ccccccccceeccCceeecc----------------ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence            35556666666655443221                23456677777777654 44455566777788888877643 66


Q ss_pred             ccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEE
Q 047929          519 GIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQIL  583 (790)
Q Consensus       519 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  583 (790)
                      .+...+|.+|.+|+.+++..+ +. .+....+..+++|+.+++..+ ++ ....+|.++++|+.+
T Consensus       333 ~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          333 EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            666777888888888888765 33 555556667788888887654 22 223467777777765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=4.2e-12  Score=119.96  Aligned_cols=127  Identities=25%  Similarity=0.330  Sum_probs=93.7

Q ss_pred             CEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCC
Q 047929          175 KVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY  254 (790)
Q Consensus       175 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  254 (790)
                      ++++++++.+..++....   ++|++|++++|.+.  .+|..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            456666777666654322   57788888888774  5677777788888888888888877777788888888888888


Q ss_pred             CcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCC
Q 047929          255 NQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELG  307 (790)
Q Consensus       255 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~  307 (790)
                      |.+....+..|..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence            8888777777888888888888888877 444444677777777777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.34  E-value=1.7e-12  Score=121.06  Aligned_cols=63  Identities=19%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             ccCCCCCEEeCCCCcCCcCCCc--cccCCCCCCEEeCcCccCccccCcc----ccCCCCCCEEECcCCccc
Q 047929          667 TNLKGLQSLNLSHNSFIGKIPE--TIGNMRSIESLDLSGNQISGKIPQS----MSSLSFLNHLNLSDNKLV  731 (790)
Q Consensus       667 ~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L~l~~n~l~  731 (790)
                      ..+++|++|++++|.+. .+|.  .+..+++|+.|++++|++. ..|..    +..+++|+.|++++|...
T Consensus        85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            55556666666666654 3333  5556666666666666665 33442    566666666666666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.32  E-value=3.3e-12  Score=119.01  Aligned_cols=134  Identities=16%  Similarity=0.216  Sum_probs=92.3

Q ss_pred             ccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccc
Q 047929          525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAM  604 (790)
Q Consensus       525 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L  604 (790)
                      +..+++|+.|++++|.+. .++. +....++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..+..++  
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP--   88 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT--
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC--
Confidence            344556666666666655 3333 222344777777777777754  4677778888888888887744333334433  


Q ss_pred             cccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCc--ccccCCCCCEEeCCCCcC
Q 047929          605 ATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPM--EVTNLKGLQSLNLSHNSF  682 (790)
Q Consensus       605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l  682 (790)
                                                                .|++|++++|.+. .+|.  .+..+++|++|++++|++
T Consensus        89 ------------------------------------------~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           89 ------------------------------------------DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             ------------------------------------------TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ------------------------------------------CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC
Confidence                                                      3457888888886 4555  678889999999999998


Q ss_pred             CcCCCcc----ccCCCCCCEEeCcCccCcc
Q 047929          683 IGKIPET----IGNMRSIESLDLSGNQISG  708 (790)
Q Consensus       683 ~~~~p~~----l~~l~~L~~L~l~~n~l~~  708 (790)
                      + ..|..    +..+++|+.||+++|....
T Consensus       126 ~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          126 T-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             G-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             C-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            7 45553    7888999999999998764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.30  E-value=4.9e-14  Score=134.35  Aligned_cols=128  Identities=18%  Similarity=0.301  Sum_probs=71.2

Q ss_pred             cCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeee
Q 047929          552 RFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEIS  631 (790)
Q Consensus       552 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  631 (790)
                      .+++|++|++++|++++ +| .+..+++|+.|++++|.+. .+|..+..+                              
T Consensus        46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~------------------------------   92 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA------------------------------   92 (198)
T ss_dssp             HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH------------------------------
T ss_pred             cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC------------------------------
Confidence            56666666666666664 34 5566666666666666665 334332222                              


Q ss_pred             eeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCC-ccccCCCCCCEEeCcCccCcccc
Q 047929          632 LVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIP-ETIGNMRSIESLDLSGNQISGKI  710 (790)
Q Consensus       632 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~  710 (790)
                                    +.|+.|++++|.+.+ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..
T Consensus        93 --------------~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A           93 --------------DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             --------------HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             --------------CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence                          234466666666653 33 35556666666666666653221 24556666666666666665444


Q ss_pred             Ccc----------ccCCCCCCEEECcCCcc
Q 047929          711 PQS----------MSSLSFLNHLNLSDNKL  730 (790)
Q Consensus       711 p~~----------l~~l~~L~~L~l~~n~l  730 (790)
                      |..          +..+++|+.|+  +|++
T Consensus       157 ~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          157 KENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             HTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             ccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            432          55566666654  4444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.29  E-value=1.2e-11  Score=114.26  Aligned_cols=90  Identities=18%  Similarity=0.196  Sum_probs=80.9

Q ss_pred             ceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECc
Q 047929          647 LVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLS  726 (790)
Q Consensus       647 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~  726 (790)
                      .++.|+|++|.+.+..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|++.+..+..|..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            45789999999998888889999999999999999997777788999999999999999998777789999999999999


Q ss_pred             CCcccccCCC
Q 047929          727 DNKLVGKIPS  736 (790)
Q Consensus       727 ~n~l~~~~p~  736 (790)
                      +|++....+.
T Consensus       111 ~N~~~c~c~~  120 (170)
T 3g39_A          111 NNPWDCACSD  120 (170)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCCCCCchh
Confidence            9999876653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.27  E-value=4.7e-14  Score=134.46  Aligned_cols=152  Identities=18%  Similarity=0.248  Sum_probs=120.2

Q ss_pred             cCCCCcEEEcCCCcccccCCc------cccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccc
Q 047929          552 RFSRLRILNLRSNKLHGIFPI------QICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDY  625 (790)
Q Consensus       552 ~~~~L~~L~L~~n~~~~~~~~------~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~  625 (790)
                      ..+.++.++++.+.+.+..|.      .+..+++|++|++++|.+.+ +| .+.+++                       
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-----------------------   70 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGME-----------------------   70 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHT-----------------------
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCC-----------------------
Confidence            456667777777777666555      78899999999999999885 55 555444                       


Q ss_pred             eeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCcc
Q 047929          626 IVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQ  705 (790)
Q Consensus       626 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~  705 (790)
                                           .|+.|++++|.+. .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|+
T Consensus        71 ---------------------~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           71 ---------------------NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             ---------------------TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred             ---------------------CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence                                 3568999999998 678878888999999999999985 45 68889999999999999


Q ss_pred             CccccC-ccccCCCCCCEEECcCCcccccCCCC-----------CcCCccCCccccCCccc
Q 047929          706 ISGKIP-QSMSSLSFLNHLNLSDNKLVGKIPSS-----------TQLQSFGASSITGNDLC  754 (790)
Q Consensus       706 l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~-----------~~~~sl~~l~~~~n~l~  754 (790)
                      +....+ ..+..+++|++|++++|++.+.+|..           ..+++|+.++  +|.++
T Consensus       127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            985433 47889999999999999999887762           3355666554  54554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.22  E-value=5.3e-11  Score=110.11  Aligned_cols=88  Identities=18%  Similarity=0.226  Sum_probs=72.3

Q ss_pred             eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929          648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD  727 (790)
Q Consensus       648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  727 (790)
                      ++.|+|++|.+.+..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+..+..|..+++|+.|++++
T Consensus        35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            46788888888777777888888999999999998876666678889999999999999876666688899999999999


Q ss_pred             CcccccCC
Q 047929          728 NKLVGKIP  735 (790)
Q Consensus       728 n~l~~~~p  735 (790)
                      |++....+
T Consensus       115 N~~~c~~~  122 (174)
T 2r9u_A          115 NPWDCECR  122 (174)
T ss_dssp             SCBCTTBG
T ss_pred             CCcccccc
Confidence            98876544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.21  E-value=5.7e-11  Score=109.58  Aligned_cols=104  Identities=22%  Similarity=0.269  Sum_probs=92.0

Q ss_pred             eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929          648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD  727 (790)
Q Consensus       648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  727 (790)
                      .+.+++++|.+. .+|..+  .++|++|+|++|.+++..|..|..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            358999999998 577666  38999999999999988899999999999999999999988788889999999999999


Q ss_pred             CcccccCCCC-CcCCccCCccccCCccc
Q 047929          728 NKLVGKIPSS-TQLQSFGASSITGNDLC  754 (790)
Q Consensus       728 n~l~~~~p~~-~~~~sl~~l~~~~n~l~  754 (790)
                      |++.+..|.. ..+.+|+.+++.+|++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            9999766653 56889999999999664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.20  E-value=6.6e-11  Score=109.49  Aligned_cols=103  Identities=17%  Similarity=0.239  Sum_probs=91.0

Q ss_pred             eEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCC
Q 047929          649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDN  728 (790)
Q Consensus       649 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n  728 (790)
                      +.+++++|.+. .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|++.+..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57999999997 6777664  89999999999999888999999999999999999999877777899999999999999


Q ss_pred             cccccCCC-CCcCCccCCccccCCccc
Q 047929          729 KLVGKIPS-STQLQSFGASSITGNDLC  754 (790)
Q Consensus       729 ~l~~~~p~-~~~~~sl~~l~~~~n~l~  754 (790)
                      ++.+.+|. ...+.+|+.+++.+|++.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            99976665 356889999999999664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=1.1e-12  Score=137.45  Aligned_cols=187  Identities=18%  Similarity=0.128  Sum_probs=100.0

Q ss_pred             CCCCEEEccCCcccccCCcccc-----CCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccc-----
Q 047929          505 TSLRSLNLRSNRLSGIIPVPFE-----NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQI-----  574 (790)
Q Consensus       505 ~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~-----  574 (790)
                      ++|+.|++++|.++......+.     ..++|+.|++++|.+.+.....+...+++|++|++++|.+++.....+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4566666666666543322222     225677777777766544444444455667777777777654332222     


Q ss_pred             cCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEcc
Q 047929          575 CHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDIS  654 (790)
Q Consensus       575 ~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  654 (790)
                      ...++|++|++++|.++......+.                                        ......+.|++|+|+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~----------------------------------------~~L~~~~~L~~L~Ls  191 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLM----------------------------------------EGLAGNTSVTHLSLL  191 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHH----------------------------------------HHHHTCSSCCEEECT
T ss_pred             hcCCccceeeCCCCCCChHHHHHHH----------------------------------------HHHhcCCCcCEEeCC
Confidence            2356777777777776532111110                                        000112345567777


Q ss_pred             CccCCC----CCCcccccCCCCCEEeCCCCcCCcC----CCccccCCCCCCEEeCcCccCccccCccccCCC-----CCC
Q 047929          655 MNNFSG----EIPMEVTNLKGLQSLNLSHNSFIGK----IPETIGNMRSIESLDLSGNQISGKIPQSMSSLS-----FLN  721 (790)
Q Consensus       655 ~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-----~L~  721 (790)
                      +|.+.+    .++..+...++|++|+|++|.+++.    ++.++...++|++|++++|.+.......+..+.     .|+
T Consensus       192 ~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~  271 (372)
T 3un9_A          192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR  271 (372)
T ss_dssp             TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CE
T ss_pred             CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccch
Confidence            776653    1234455667788888888877643    233444557788888888887654443343321     155


Q ss_pred             EEE--CcCCccc
Q 047929          722 HLN--LSDNKLV  731 (790)
Q Consensus       722 ~L~--l~~n~l~  731 (790)
                      .+.  +.+|.+.
T Consensus       272 ~l~~ll~~~~~~  283 (372)
T 3un9_A          272 VVVSLTEGTAVS  283 (372)
T ss_dssp             EECCCC----CH
T ss_pred             hhHhhhcCCccC
Confidence            555  5555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.12  E-value=1.3e-08  Score=108.03  Aligned_cols=131  Identities=20%  Similarity=0.279  Sum_probs=77.5

Q ss_pred             ccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCccc
Q 047929          439 WLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLS  518 (790)
Q Consensus       439 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  518 (790)
                      +|.+|..|+.+.+.++.. .+             -...|..+++|+.+.+.. .++......|..|.+|+.+.+..+ ++
T Consensus       260 aF~~c~~L~~i~lp~~~~-~I-------------~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~  323 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVV-SI-------------GTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT  323 (394)
T ss_dssp             TTTTCSSCCEEECCTTCC-EE-------------CTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred             eeeecccccEEecccccc-ee-------------cCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc
Confidence            466667777777654321 11             123456667777777753 344455566777888888888653 66


Q ss_pred             ccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcc
Q 047929          519 GIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRL  590 (790)
Q Consensus       519 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l  590 (790)
                      .+....|.+|.+|+.+.+..+ +. .+....+.++++|+.+++.++....   ..+..+.+|+.+.+..+.+
T Consensus       324 ~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          324 QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            666777888888888888654 33 5666666677888888887765431   2455667777777765543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.10  E-value=9.3e-09  Score=109.27  Aligned_cols=65  Identities=14%  Similarity=0.143  Sum_probs=40.5

Q ss_pred             CCCccCCCCC-CCcEEeCCCCcCCccccccccCCCCCCEEEccCcc---cccccCcccccCCCCCCEEEcc
Q 047929          236 PIPDGFKNLT-SLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNR---LQGTISSIGLENLTFIKTLDLS  302 (790)
Q Consensus       236 ~~p~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~---l~~~~~~~~l~~l~~L~~L~l~  302 (790)
                      .-..+|.++. .|+.+.+... ++.+...+|.++.+|+.+.+..+.   ++ .+...+|..+.+|+.+.+.
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~  122 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPIL  122 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGG
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccC
Confidence            3445677764 5888887543 566666778888888888776653   22 3444446666666655443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.99  E-value=8.7e-10  Score=115.25  Aligned_cols=102  Identities=16%  Similarity=0.175  Sum_probs=63.3

Q ss_pred             EEEccCc-cCCCCCCcccccCCCCCEEeCCC-CcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929          650 SIDISMN-NFSGEIPMEVTNLKGLQSLNLSH-NSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD  727 (790)
Q Consensus       650 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  727 (790)
                      .++.+++ ++. .+|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|++.+..|..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3566665 555 3555 66666666666664 666655556666666666666666666666666666666666666666


Q ss_pred             CcccccCCCCCcCCccCCccccCCcc
Q 047929          728 NKLVGKIPSSTQLQSFGASSITGNDL  753 (790)
Q Consensus       728 n~l~~~~p~~~~~~sl~~l~~~~n~l  753 (790)
                      |++.+.+|......+|+.|.+.+|.+
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCc
Confidence            66665444444433466666666633

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.95  E-value=3.6e-11  Score=125.87  Aligned_cols=16  Identities=31%  Similarity=0.195  Sum_probs=7.9

Q ss_pred             cCCCCcEEEccCcccC
Q 047929          345 LFKNLHTLALSDNSVS  360 (790)
Q Consensus       345 ~l~~L~~L~L~~~~i~  360 (790)
                      ..++|++|+|++|.+.
T Consensus       237 ~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          237 EHPSLELLHLYFNELS  252 (372)
T ss_dssp             HCSSCCEEECTTSSCC
T ss_pred             hCCCCCEEeccCCCCC
Confidence            3445555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.89  E-value=3.3e-09  Score=110.81  Aligned_cols=58  Identities=26%  Similarity=0.293  Sum_probs=29.7

Q ss_pred             eEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCc
Q 047929          649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS  707 (790)
Q Consensus       649 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  707 (790)
                      +.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..++ |+.|++.+|.+.
T Consensus        59 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            3555555555554444555555555555555555543333344333 555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.82  E-value=8.3e-07  Score=93.70  Aligned_cols=66  Identities=9%  Similarity=0.066  Sum_probs=33.2

Q ss_pred             EEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCC
Q 047929          650 SIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSL  717 (790)
Q Consensus       650 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l  717 (790)
                      .+++.++.+...-...|.++.+|+.+.|..+ ++.....+|.++++|+.+.+..+ ++..-..+|...
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            3444444333223344555666666666543 44344456666666666666543 443334455443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.74  E-value=1.4e-06  Score=91.97  Aligned_cols=87  Identities=17%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             cccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcc
Q 047929          438 SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRL  517 (790)
Q Consensus       438 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i  517 (790)
                      .+|.++.+|+.+.+..+ +..+.             ...|..+++|+.+.+.++.++......|.+|.+|+.+.+..+ +
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~~i~-------------~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l  321 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VKTVP-------------YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L  321 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CSEEC-------------TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred             cccceeehhcccccccc-ceecc-------------ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c
Confidence            34556666666666433 22211             134566777777777777776566667777788888887643 6


Q ss_pred             cccCCccccCCCCCcEEECcCC
Q 047929          518 SGIIPVPFENCSQLVALDMGEN  539 (790)
Q Consensus       518 ~~~~~~~l~~l~~L~~L~l~~n  539 (790)
                      +.+...+|.+|++|+.+.+..+
T Consensus       322 ~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          322 KTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CEECTTTTTTCTTCCCCCCCTT
T ss_pred             cEEHHHHhhCCCCCCEEEECCc
Confidence            6666677888888887777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.67  E-value=5.1e-09  Score=108.43  Aligned_cols=202  Identities=15%  Similarity=0.234  Sum_probs=107.2

Q ss_pred             CCcEEEEEcCCCCCCc--------cccccCcCCCCCCEEeCCCCCCCC--------CCcCccccCCCCCCEEeCCCCccc
Q 047929           46 TGHVLELNLERSELGG--------KINPALVDLKHLNLLDLSGNDFQG--------IQIPEYIGSMDNLRYLNLSGAGFA  109 (790)
Q Consensus        46 ~~~v~~L~L~~~~~~~--------~~~~~l~~l~~L~~L~Ls~~~~~~--------~~l~~~~~~l~~L~~L~Ls~~~~~  109 (790)
                      ..+|+.|.+......+        .+..++.++++|+.|.+.......        ..+...+..+++|+.|+++++.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            3467778777655432        124556678899999886643321        124455667788888888776322


Q ss_pred             ccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCc--c----
Q 047929          110 GWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC--K----  183 (790)
Q Consensus       110 ~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~--~----  183 (790)
                      . ++. +. +++|++|++..+.+.  ...+..+.                        ...+|+|++|+|+.+  .    
T Consensus       186 ~-l~~-~~-~~~L~~L~L~~~~l~--~~~l~~l~------------------------~~~lp~L~~L~L~~~~~~~~~~  236 (362)
T 2ra8_A          186 S-IGK-KP-RPNLKSLEIISGGLP--DSVVEDIL------------------------GSDLPNLEKLVLYVGVEDYGFD  236 (362)
T ss_dssp             B-CCS-CB-CTTCSEEEEECSBCC--HHHHHHHH------------------------HSBCTTCCEEEEECBCGGGTCC
T ss_pred             e-ecc-cc-CCCCcEEEEecCCCC--hHHHHHHH------------------------HccCCCCcEEEEeccccccccc
Confidence            2 333 33 677888887766432  11122221                        123455555544321  1    


Q ss_pred             --ccccCcccC--cCCCCCCEEECCCCCCCCCCcchhcc---CCCCCcEEEccCCcCCCC----CCccCCCCCCCcEEeC
Q 047929          184 --LHHFAPLAS--ANFSSLNALDLSGNLFGKTSIPSWVF---GLSDLVFLDLSSNIFRGP----IPDGFKNLTSLRYLDL  252 (790)
Q Consensus       184 --~~~~~~~~l--~~l~~L~~L~L~~~~l~~~~lp~~l~---~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l  252 (790)
                        +..+. ..+  ..+++|++|++.+|.+.+ ..+..+.   .+++|++|+++.|.+...    ++..+..+++|+.|++
T Consensus       237 ~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L  314 (362)
T 2ra8_A          237 GDMNVFR-PLFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM  314 (362)
T ss_dssp             SCGGGTG-GGSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred             hhHHHHH-HHHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence              00010 111  235666666666665532 1122221   356777777777766542    2333345678888888


Q ss_pred             CCCcCCccccccccC-CCCCCEEEccCcc
Q 047929          253 SYNQFNSTISDCFSN-FDDLEYLSLGYNR  280 (790)
Q Consensus       253 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  280 (790)
                      ++|.++......+.. +  ...++++.++
T Consensus       315 ~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          315 KYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            888776544444432 2  2345555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.55  E-value=9.3e-08  Score=98.96  Aligned_cols=62  Identities=15%  Similarity=0.125  Sum_probs=36.8

Q ss_pred             cchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCcccccccc--CCCCCCEEEcc
Q 047929          213 IPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFS--NFDDLEYLSLG  277 (790)
Q Consensus       213 lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~  277 (790)
                      +...+..+++|+.|++++|.-. .++. +. +++|++|++..+.+.......+.  .+++|+.|+|+
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            4455566777888877776311 2232 32 67777777777766543333333  56777777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=4.7e-08  Score=91.17  Aligned_cols=72  Identities=10%  Similarity=0.119  Sum_probs=44.4

Q ss_pred             cccccCcCCCCCCEEeCCCC-CCCCC---CcCccccCCCCCCEEeCCCCccccc----CCCCCCCCCCCcEEECcCCccc
Q 047929           62 KINPALVDLKHLNLLDLSGN-DFQGI---QIPEYIGSMDNLRYLNLSGAGFAGW----IPHQLGNLSNLMHLDLSGSYYE  133 (790)
Q Consensus        62 ~~~~~l~~l~~L~~L~Ls~~-~~~~~---~l~~~~~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~ls~~~~~  133 (790)
                      .+...+...+.|++|+|++| .+.+.   .+.+.+...++|++|+|++|.+...    +...+...++|++|++++|.+.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34455666777777777777 66532   1344555667777777777776542    3334445566777777776544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.11  E-value=2.8e-07  Score=85.84  Aligned_cols=123  Identities=14%  Similarity=0.061  Sum_probs=66.9

Q ss_pred             cCccccCCCCCCEEeCCCC-ccccc----CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCc
Q 047929           88 IPEYIGSMDNLRYLNLSGA-GFAGW----IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKAS  162 (790)
Q Consensus        88 l~~~~~~l~~L~~L~Ls~~-~~~~~----lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  162 (790)
                      +...+...++|++|+|++| .+...    +...+...++|++|+|++|.+.....                        .
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~------------------------~   83 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA------------------------F   83 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH------------------------H
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH------------------------H
Confidence            3445566778888888887 66542    44455666777777777776542211                        1


Q ss_pred             hhHHhhCCCCCCCEEEccCccccccC----cccCcCCCCCCEEEC--CCCCCCCCC---cchhccCCCCCcEEEccCCcC
Q 047929          163 DWLLVINSLPSLKVLKLFSCKLHHFA----PLASANFSSLNALDL--SGNLFGKTS---IPSWVFGLSDLVFLDLSSNIF  233 (790)
Q Consensus       163 ~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L--~~~~l~~~~---lp~~l~~l~~L~~L~l~~~~~  233 (790)
                      .+...+...+.|++|++++|.+....    ..++...+.|++|++  ++|.+.+..   +...+...++|++|++++|.+
T Consensus        84 ~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           84 ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            22333444455555555555554421    233444555666666  555554311   223333456666666666654


Q ss_pred             C
Q 047929          234 R  234 (790)
Q Consensus       234 ~  234 (790)
                      .
T Consensus       164 ~  164 (185)
T 1io0_A          164 G  164 (185)
T ss_dssp             H
T ss_pred             C
Confidence            3

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.01  E-value=1.8e-06  Score=77.89  Aligned_cols=85  Identities=8%  Similarity=0.030  Sum_probs=55.2

Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCcEEECcCCc-ccccCchhhhhc---CCCCcEEEcCCCc-ccccCCccccCCCC
Q 047929          505 TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE-FVGNIPTWMGER---FSRLRILNLRSNK-LHGIFPIQICHLSS  579 (790)
Q Consensus       505 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~---~~~L~~L~L~~n~-~~~~~~~~~~~l~~  579 (790)
                      ..|+.|++++|.++...-..+.++++|+.|++++|. +++..-..+...   .++|++|+|++|. +++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            456777777776665555556667777777777774 444333333321   2468888888874 66544445667888


Q ss_pred             CcEEEccCCc
Q 047929          580 LQILDVAYNR  589 (790)
Q Consensus       580 L~~L~ls~n~  589 (790)
                      |+.|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888888885

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.97  E-value=1e-06  Score=79.42  Aligned_cols=82  Identities=13%  Similarity=0.075  Sum_probs=40.6

Q ss_pred             cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCC-CCCCCcCccccCC----CCCCEEeCCCCc-ccccCCCCCCCCCC
Q 047929           48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGND-FQGIQIPEYIGSM----DNLRYLNLSGAG-FAGWIPHQLGNLSN  121 (790)
Q Consensus        48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~l~~~~~~l----~~L~~L~Ls~~~-~~~~lp~~l~~l~~  121 (790)
                      ++++||++++.+++..-..+..+++|+.|+|++|. +++. --..+..+    ++|++|+|++|. +++..-..+.++++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            45666666665554444555555666666665553 3332 12223332    245555555553 44433333444555


Q ss_pred             CcEEECcCC
Q 047929          122 LMHLDLSGS  130 (790)
Q Consensus       122 L~~L~ls~~  130 (790)
                      |++|++++|
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.91  E-value=7.6e-06  Score=79.92  Aligned_cols=66  Identities=27%  Similarity=0.448  Sum_probs=33.7

Q ss_pred             cCCCCCEEeCCCCcCCc--CCCccccCCCCCCEEeCcCccCccccCccccCCC--CCCEEECcCCcccccCC
Q 047929          668 NLKGLQSLNLSHNSFIG--KIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS--FLNHLNLSDNKLVGKIP  735 (790)
Q Consensus       668 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~p  735 (790)
                      ++++|++|+|++|.+++  .+|..+..+++|+.|+|++|++.+.  ..+..+.  +|++|++++|++.+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            34555555555555554  2233344555566666666655533  2233333  56666666666655544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.86  E-value=8.5e-06  Score=79.59  Aligned_cols=81  Identities=21%  Similarity=0.278  Sum_probs=64.4

Q ss_pred             hcccceeEEEccCccCCC--CCCcccccCCCCCEEeCCCCcCCcCCCccccCCC--CCCEEeCcCccCccccC-------
Q 047929          643 SILNLVRSIDISMNNFSG--EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMR--SIESLDLSGNQISGKIP-------  711 (790)
Q Consensus       643 ~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~p-------  711 (790)
                      ..++.|+.|+|++|.+.+  .+|..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++++|++.+..|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457789999999999987  4456677899999999999999865  3344444  99999999999987665       


Q ss_pred             ccccCCCCCCEEEC
Q 047929          712 QSMSSLSFLNHLNL  725 (790)
Q Consensus       712 ~~l~~l~~L~~L~l  725 (790)
                      ..+..+++|+.||=
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            24677888888863

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.01  E-value=7.7e-05  Score=68.61  Aligned_cols=94  Identities=9%  Similarity=0.068  Sum_probs=54.2

Q ss_pred             cccccCcCCCCCCEEeCCCC-CCCCC---CcCccccCCCCCCEEeCCCCcccccCC----CCCCCCCCCcEEECcCCccc
Q 047929           62 KINPALVDLKHLNLLDLSGN-DFQGI---QIPEYIGSMDNLRYLNLSGAGFAGWIP----HQLGNLSNLMHLDLSGSYYE  133 (790)
Q Consensus        62 ~~~~~l~~l~~L~~L~Ls~~-~~~~~---~l~~~~~~l~~L~~L~Ls~~~~~~~lp----~~l~~l~~L~~L~ls~~~~~  133 (790)
                      .+...+.+-+.|+.|+|+++ .+.+.   .+.+++..-+.|+.|+|++|.+.+...    .++..-+.|++|+|++|.|.
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34444556678888888875 55431   144556666778888888887775433    33345567777777777655


Q ss_pred             cccc--CccccCCCCCCcEEECCC
Q 047929          134 LRVE--DISWLAGPSLLEHLDTSD  155 (790)
Q Consensus       134 ~~~~--~~~~l~~l~~L~~L~l~~  155 (790)
                      ..+.  ....+..-+.|++|++++
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCC
Confidence            3221  112333344455555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.94  E-value=0.0015  Score=56.12  Aligned_cols=56  Identities=18%  Similarity=0.298  Sum_probs=33.8

Q ss_pred             EEeCCCCcCC-cCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCccc
Q 047929          674 SLNLSHNSFI-GKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLV  731 (790)
Q Consensus       674 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  731 (790)
                      .++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555554 24444333  45677777777776555556666777777777777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.38  E-value=0.0013  Score=60.36  Aligned_cols=91  Identities=12%  Similarity=0.032  Sum_probs=49.9

Q ss_pred             ccccCCCCCCEEeCCCC-ccccc----CCCCCCCCCCCcEEECcCCccccccc--CccccCCCCCCcEEECCCCCCCCC-
Q 047929           90 EYIGSMDNLRYLNLSGA-GFAGW----IPHQLGNLSNLMHLDLSGSYYELRVE--DISWLAGPSLLEHLDTSDVDLIKA-  161 (790)
Q Consensus        90 ~~~~~l~~L~~L~Ls~~-~~~~~----lp~~l~~l~~L~~L~ls~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~-  161 (790)
                      ..+.+-+.|+.|+|+++ .+...    +.+++..-+.|++|+|++|.+.....  ....+..-+.|++|+++.|.+... 
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            33455678888888875 66542    44556666778888888876553221  112233344555555555555443 


Q ss_pred             -chhHHhhCCCCCCCEEEcc
Q 047929          162 -SDWLLVINSLPSLKVLKLF  180 (790)
Q Consensus       162 -~~~~~~l~~l~~L~~L~l~  180 (790)
                       ..+...+..-+.|++|+++
T Consensus       115 a~ala~aL~~N~tL~~L~L~  134 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKAD  134 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECC
T ss_pred             HHHHHHHHhhCCceeEEECC
Confidence             3333444444444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.75  E-value=0.018  Score=49.17  Aligned_cols=56  Identities=14%  Similarity=0.254  Sum_probs=46.6

Q ss_pred             EEEccCccCC-CCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCc
Q 047929          650 SIDISMNNFS-GEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS  707 (790)
Q Consensus       650 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  707 (790)
                      .++.++++++ ..+|..+  -++|++|+|++|.++...+..|..+++|+.|+|++|...
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            6888888886 3566544  257999999999999777788999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	790
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-13
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-10
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-09
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-09
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  103 bits (258), Expect = 2e-24
 Identities = 60/383 (15%), Positives = 120/383 (31%), Gaps = 20/383 (5%)

Query: 346 FKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG 405
                   L   +V+  +     +L  +T L      +  +        L  L     + 
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSN 75

Query: 406 NSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW 465
           N +      K +     + +            +  +        +               
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPF 525
                            L  L   +     +    +  LT+L  L++ SN+         
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDISVL 193

Query: 526 ENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDV 585
              + L +L    N+     P  +    + L  L+L  N+L  I    +  L++L  LD+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDIGT--LASLTNLTDLDL 248

Query: 586 AYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSIL 645
           A N++S   P  ++  T +  +       +          +        +   +   S L
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 646 NLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQ 705
             +  + +  NN S   P  V++L  LQ L  ++N        ++ N+ +I  L    NQ
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 706 ISGKIPQSMSSLSFLNHLNLSDN 728
           IS   P  +++L+ +  L L+D 
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.9 bits (206), Expect = 9e-18
 Identities = 59/379 (15%), Positives = 109/379 (28%), Gaps = 48/379 (12%)

Query: 219 GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY 278
            L++ +   L        +     +L  +  L        S   D     ++L  ++   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75

Query: 279 NRLQGTISSIGLENLTFIKTLDLSFNELGQDISEIL----DIISACAAFELESLFLRGCK 334
           N+L        L  L  I   +    ++    +        + +           L    
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 335 ISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGN 394
                +N +     L  L        G        L++LT L+  + + N +        
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 395 LTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNT 454
           LT L    A  N ++       +     L+L              L S  +L+ LD++N 
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSL----NGNQLKDIGTLASLTNLTDLDLANN 251

Query: 455 RISDIIPRWFWNSIY-----------------------------QDTIPDCWMNWPDLRV 485
           +IS++ P      +                              Q        N  +L  
Sbjct: 252 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 486 LNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNI 545
           L L  N  +   P+   +LT L+ L   +N++S        N + +  L  G N+     
Sbjct: 312 LTLYFNNISDISPV--SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 367

Query: 546 PTWMGERFSRLRILNLRSN 564
           P       +R+  L L   
Sbjct: 368 PL---ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 8e-17
 Identities = 65/373 (17%), Positives = 127/373 (34%), Gaps = 41/373 (10%)

Query: 49  VLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGF 108
            ++  L ++ +   ++    DL  +  L        GI+  + +  ++NL  +N S    
Sbjct: 24  KMKTVLGKTNVTDTVSQT--DLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQL 78

Query: 109 AGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLV- 167
               P  L NL+ L+ + ++ +         +      L    +         +   L  
Sbjct: 79  TDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 168 -------INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGL 220
                  I+ + +L  L                  ++L  L+       K S  S +  L
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 221 SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNR 280
           ++L  L  ++N      P G    T+L  L L+ NQ     +   ++  +L  L L  N+
Sbjct: 197 TNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ 252

Query: 281 LQGTISSIGLENLTFIKTLDLSFNELGQDIS---------------EILDIISACAAFEL 325
           +       GL  LT    L L  N++                    ++ DI        L
Sbjct: 253 ISNLAPLSGLTKLT---ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 326 ESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNG 385
             L L    IS    + +     L  L  ++N VS     +   L+++ +L   +N ++ 
Sbjct: 310 TYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISD 365

Query: 386 MISEIHFGNLTEL 398
           +    +   +T+L
Sbjct: 366 LTPLANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 5e-15
 Identities = 83/455 (18%), Positives = 137/455 (30%), Gaps = 92/455 (20%)

Query: 236 PIPDGF--KNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI-GLEN 292
           PI   F    L       L       T+S   ++ D +  L          I SI G+E 
Sbjct: 11  PINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG----IKSIDGVEY 64

Query: 293 LTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTL 352
           L  +  ++ S N+L  DI+ + ++             L    ++      +    NL  L
Sbjct: 65  LNNLTQINFSNNQL-TDITPLKNLTK-----------LVDILMNNNQIADITPLANLTNL 112

Query: 353 ALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKI 412
                  +        +  +       ++N    IS +      +   F      +    
Sbjct: 113 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 172

Query: 413 NSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIY--- 469
           N   +                    S L    +L  L  +N +ISDI P     ++    
Sbjct: 173 NLTTLERLD-------ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 225

Query: 470 ----QDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPF 525
               Q        +  +L  L+L NN+ +   P+S   LT L  L L +N++S I   P 
Sbjct: 226 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQISNIS--PL 281

Query: 526 ENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDV 585
              + L  L++ EN+     P         L  L L  N +  I P  +  L+ LQ L  
Sbjct: 282 AGLTALTNLELNENQLEDISPISN---LKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 336

Query: 586 AYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSIL 645
           A N++S      + N T +                                         
Sbjct: 337 ANNKVSD--VSSLANLTNI----------------------------------------- 353

Query: 646 NLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHN 680
                +    N  S   P+   NL  +  L L+  
Sbjct: 354 ---NWLSAGHNQISDLTPLA--NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 44/228 (19%)

Query: 28  WIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQ 87
                   +   +    I  ++ EL+L  ++L       L  L +L  LDL+ N    + 
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL- 256

Query: 88  IPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSL 147
               +  +  L  L L     +   P         + L+ +                   
Sbjct: 257 --APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE---------------- 298

Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNL 207
                            +  I++L +L  L L+   +   +P+  ++ + L  L  + N 
Sbjct: 299 ----------------DISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNK 340

Query: 208 FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYN 255
               S  S +  L+++ +L    N      P    NLT +  L L+  
Sbjct: 341 V---SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 23  NHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGND 82
              A    +++  +   +   +   ++  L L  + +       +  L  L  L  + N 
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNK 340

Query: 83  FQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG 129
                    + ++ N+ +L+      +   P  L NL+ +  L L+ 
Sbjct: 341 VSD---VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.3 bits (233), Expect = 1e-21
 Identities = 63/303 (20%), Positives = 105/303 (34%), Gaps = 22/303 (7%)

Query: 209 GKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNF 268
           G   +P  +    D   LDL +N         FKNL +L  L L  N+ +      F+  
Sbjct: 21  GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 78

Query: 269 DDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESL 328
             LE L L  N+L      +  +    ++ L +  NE+ +    + + ++      +  L
Sbjct: 79  VKLERLYLSKNQL----KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM---IVVEL 131

Query: 329 FLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMIS 388
                K SG         K L  + ++D +++  +P   G   SLT L L  N +  + +
Sbjct: 132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDA 188

Query: 389 EIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSK 448
                 L  LA    + NS++   N        L  L L +  L    P  L   K++  
Sbjct: 189 A-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQV 246

Query: 449 LDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLR 508
           + + N  IS I    F         P           ++L +N       I   T   + 
Sbjct: 247 VYLHNNNISAIGSNDF-------CPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVY 298

Query: 509 SLN 511
              
Sbjct: 299 VRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 3e-16
 Identities = 40/249 (16%), Positives = 77/249 (30%), Gaps = 20/249 (8%)

Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
            L  +   L L +N ++         L +L  L L NN ++ +     F  L +L   Y 
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYL 86

Query: 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRW 463
           + N +            +L         +     + L+    +                 
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE--------------LG 132

Query: 464 FWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPV 523
                        +     L  + + +   T    I  G   SL  L+L  N+++ +   
Sbjct: 133 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAA 189

Query: 524 PFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQIL 583
             +  + L  L +  N         +      LR L+L +NKL    P  +     +Q++
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 247

Query: 584 DVAYNRLSG 592
            +  N +S 
Sbjct: 248 YLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.0 bits (188), Expect = 7e-16
 Identities = 50/281 (17%), Positives = 99/281 (35%), Gaps = 28/281 (9%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
           PD  +L+L NNK T         L +L +L L +N++S I P  F    +          
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK---------- 80

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
                          L  L L  N+L  +       L  L++ +    ++  SV   +N 
Sbjct: 81  ---------------LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

Query: 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660
              +    +  +   I + +F+    +  I +           +   +  + +  N  + 
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 185

Query: 661 EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL 720
                +  L  L  L LS NS       ++ N   +  L L+ N++  K+P  ++   ++
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 244

Query: 721 NHLNLSDNKLVGKIPSSTQLQSFGA--SSITGNDLCGAPLS 759
             + L +N +     +      +    +S +G  L   P+ 
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 50/284 (17%), Positives = 89/284 (31%), Gaps = 14/284 (4%)

Query: 71  KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGS 130
               LLDL  N    I       ++ NL  L L     +   P     L  L  L LS +
Sbjct: 31  PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPL 190
             +   E +         + L   + ++ K    +    +   +  L     K       
Sbjct: 90  QLKELPEKMPKTL-----QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 191 ASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYL 250
           A      L+ + ++      T+IP  +     L  L L  N          K L +L  L
Sbjct: 145 AFQGMKKLSYIRIADTNI--TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 251 DLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQ-D 309
            LS+N  ++  +   +N   L  L L  N+L      +   +  +I+ + L  N +    
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAIG 258

Query: 310 ISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLA 353
            ++               + L    +      Q   F+ ++  A
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 1e-13
 Identities = 49/291 (16%), Positives = 100/291 (34%), Gaps = 28/291 (9%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
            LRV+   +      +P  +        L+L++N+++ I    F+N   L  L +  N+ 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 542 VGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNF 601
               P        +L  L L  N+L  +       L  L++ +    ++  SV   +N  
Sbjct: 68  SKISPGAFA-PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 602 TAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE 661
             +    +  +   I + +F+                      +  +  I I+  N +  
Sbjct: 127 IVVELGTNPLKSSGIENGAFQG---------------------MKKLSYIRIADTNIT-- 163

Query: 662 IPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLN 721
             +       L  L+L  N        ++  + ++  L LS N IS     S+++   L 
Sbjct: 164 -TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 222

Query: 722 HLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLALCLS 772
            L+L++NKLV         +      +  N++     ++           S
Sbjct: 223 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 2e-13
 Identities = 45/292 (15%), Positives = 93/292 (31%), Gaps = 27/292 (9%)

Query: 444 KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT 503
              + LD+ N +I++I    F N               +L  L L NNK +   P +   
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKN-------------LKNLHTLILINNKISKISPGAFAP 77

Query: 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563
           L  L  L L  N+L  +     +   +L   +    +   ++   +      +  L    
Sbjct: 78  LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNP 135

Query: 564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFEN 623
            K  GI       +  L  + +A   ++        + T +      +++  +  AS + 
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL--HLDGNKITKVDAASLKG 193

Query: 624 DYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG--EIPMEVTNLKGLQSLNLSHNS 681
              + ++ L         N  L     +     N +   ++P  + + K +Q + L +N+
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

Query: 682 FIG------KIPETIGNMRSIESLDLSGNQISGK--IPQSMSSLSFLNHLNL 725
                      P       S   + L  N +      P +   +     + L
Sbjct: 254 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 91.4 bits (225), Expect = 1e-20
 Identities = 68/303 (22%), Positives = 109/303 (35%), Gaps = 26/303 (8%)

Query: 3   CLESERVALIKLKQDFKDPSNHLASWIGDVDCCE--WGGVVCNNITG--HVLELNLERSE 58
           C   ++ AL+++K+D  +P+  L+SW+   DCC   W GV+C+  T    V  L+L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 59  LGGK--INPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQL 116
           L     I  +L +L +LN L + G +     IP  I  +  L YL ++    +G IP  L
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 117 GNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLD----TSDVDLIKASDWLLVINSLP 172
             +  L+ LD S +     +          +    D    +  +     S   L  +   
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNL--------------FGKTSIPSWVF 218
           S   L            LA  + S       +  L                       V 
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241

Query: 219 GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY 278
              +L  LDL +N   G +P G   L  L  L++S+N     I     N    +  +   
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300

Query: 279 NRL 281
           N+ 
Sbjct: 301 NKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 90.6 bits (223), Expect = 2e-20
 Identities = 58/267 (21%), Positives = 105/267 (39%), Gaps = 6/267 (2%)

Query: 502 GTLTSLRSLNLRSNRLSGIIPVP--FENCSQLVALDMGENEFVGNIPTWMGERFSRLRIL 559
                + +L+L    L    P+P    N   L  L +G    +         + ++L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 560 NLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMAT--IGSHHQVKAIY 617
            +    + G  P  +  + +L  LD +YN LSG++P  I++   +       +    AI 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 618 HASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMN-NFSGEIPMEVTNLKGLQSLN 676
            +      +   +++       +       +    + ++ N        +          
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 677 LSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPS 736
               + +      +G  +++  LDL  N+I G +PQ ++ L FL+ LN+S N L G+IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 737 STQLQSFGASSITGND-LCGAPLSNCT 762
              LQ F  S+   N  LCG+PL  CT
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 66.7 bits (161), Expect = 2e-12
 Identities = 54/278 (19%), Positives = 90/278 (32%), Gaps = 23/278 (8%)

Query: 271 LEYLSLGYNRLQGTIS-SIGLENLTFIKTLDLSFNE-LGQDISEILDIISACAAFELESL 328
           +  L L    L         L NL ++  L +     L   I       +     +L  L
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-----AIAKLTQLHYL 106

Query: 329 FLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMIS 388
           ++    +SG + + L   K L TL  S N++SG LPP+   L +L  +    N ++G I 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 389 EIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSK 448
           + +            + N                L  ++       +      S+  L  
Sbjct: 167 DSYGSFSKLFTSMTISRNR---------------LTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 449 LDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLR 508
                        +                   +L  L+L NN+  G++P  +  L  L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 509 SLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIP 546
           SLN+  N L G IP    N  +        N+ +   P
Sbjct: 272 SLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 48/264 (18%), Positives = 78/264 (29%), Gaps = 38/264 (14%)

Query: 348 NLHTLALSDNSVSG--PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG 405
            ++ L LS  ++    P+P +   L  L +L +   N            LT+L + Y   
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 406 NSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW 465
            +V+  I         L+ L      L    P  + S  +L  +     RIS  IP  + 
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 466 NSIYQDTIPDCWMN----------------------------------WPDLRVLNLGNN 491
           +     T      N                                              
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 492 KFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGE 551
                    +G   +L  L+LR+NR+ G +P        L +L++  N   G IP     
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--G 288

Query: 552 RFSRLRILNLRSNKLHGIFPIQIC 575
              R  +    +NK     P+  C
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 1e-11
 Identities = 56/257 (21%), Positives = 93/257 (36%), Gaps = 37/257 (14%)

Query: 367 SGELSSLTYLDLSNNNLNGMISEIH-FGNLTELAFFYANGN-SVNFKINSKWVPPFQLLA 424
             +   +  LDLS  NL           NL  L F Y  G  ++   I        QL  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 425 LRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLR 484
           L +   ++    P +L   K L             +   F  +    T+P    + P+L 
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTL-------------VTLDFSYNALSGTLPPSISSLPNLV 152

Query: 485 VLNLGNNKFTGSIPISMGTLTSLRS-LNLRSNRLSGIIPVPFENCSQLVALD-------- 535
            +    N+ +G+IP S G+ + L + + +  NRL+G IP  F N +              
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 536 -------------MGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQI 582
                        +   +               L  L+LR+N+++G  P  +  L  L  
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 583 LDVAYNRLSGSVPKCIN 599
           L+V++N L G +P+  N
Sbjct: 273 LNVSFNNLCGEIPQGGN 289

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 55/310 (17%), Positives = 88/310 (28%), Gaps = 51/310 (16%)

Query: 223 LVFLDLSSNIFRG--PIPDGFKNLTSLRYLDLSYN-QFNSTISDCFSNFDDLEYLSLGYN 279
           +  LDLS        PIP    NL  L +L +         I    +    L YL + + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 280 RLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQL 339
            + G                                         L +L      +SG L
Sbjct: 112 NVSGA------------------------------IPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 340 TNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
              +    NL  +    N +SG +P + G  S L      +   N +  +I         
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR--NRLTGKIPPTFANLNL 199

Query: 400 FFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
            F     ++     S      +       + +        +   K+L+ LD+ N RI   
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259

Query: 460 IPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG 519
           +P+                    L  LN+  N   G IP   G L         +N+   
Sbjct: 260 LPQGLT-------------QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLC 305

Query: 520 IIPVPFENCS 529
             P+P   C+
Sbjct: 306 GSPLP--ACT 313

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 5e-14
 Identities = 47/256 (18%), Positives = 95/256 (37%), Gaps = 8/256 (3%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
              + + L  N+ +     S     +L  L L SN L+ I    F   + L  LD+ +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
            + ++         RL  L+L    L  + P     L++LQ L +  N L         +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 601 FTAMATIGSHH-QVKAIYHASFENDYIVEEISL---VMKGFMVEYNSILNLVRSIDISMN 656
              +  +  H  ++ ++   +F   + ++ + L    +          L  + ++ +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 657 NFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSS 716
           N S      +  L+ LQ L L+ N ++            ++    S +++   +PQ ++ 
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 717 LSFLNHLNLSDNKLVG 732
                   L+ N L G
Sbjct: 271 RDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 3e-13
 Identities = 44/260 (16%), Positives = 82/260 (31%), Gaps = 16/260 (6%)

Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
           G+      + L  N +S     +     +LT L L +N L  + +    G         +
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRW 463
           +   +     + +    +L  L L  C L    P        L  L + +  +  +    
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 464 FWNSI-----------YQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNL 512
           F +                     +     L  L L  N+     P +   L  L +L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 513 RSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPI 572
            +N LS +          L  L + +N +V +        ++ L+     S+++    P 
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 573 QICHLSSLQILDVAYNRLSG 592
               L+   +  +A N L G
Sbjct: 267 ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 53/264 (20%), Positives = 85/264 (32%), Gaps = 21/264 (7%)

Query: 209 GKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNF 268
           G  ++P  +   +    + L  N         F+   +L  L L  N      +  F+  
Sbjct: 22  GLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79

Query: 269 DDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESL 328
             LE L L  N    ++       L  + TL L      +   + L          L+ L
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-----RCGLQELGPGLFRGLAALQYL 134

Query: 329 FLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMIS 388
           +L+   +     +      NL  L L  N +S     A   L SL  L L  N +  +  
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 389 EIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLR------SCHLGPHFPSWLHS 442
              F +L  L   Y   N+++        P   L  LRL        C   P   +WL  
Sbjct: 195 HA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQ- 251

Query: 443 QKHLSKLDISNTRISDIIPRWFWN 466
                K   S++ +   +P+    
Sbjct: 252 -----KFRGSSSEVPCSLPQRLAG 270

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 42/295 (14%), Positives = 88/295 (29%), Gaps = 25/295 (8%)

Query: 476 CWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALD 535
           C          +        ++P+ +    + + + L  NR+S +    F  C  L  L 
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 536 MGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP 595
           +  N                 ++    + +L  + P     L  L  L +    L    P
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 596 KCINNFTAMATIGSHH-QVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDIS 654
                  A+  +      ++A+   +F +   +  + L                      
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-------------------- 162

Query: 655 MNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSM 714
            N  S         L  L  L L  N      P    ++  + +L L  N +S    +++
Sbjct: 163 -NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221

Query: 715 SSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLAL 769
           + L  L +L L+DN  V    +            + +++  +       +++  L
Sbjct: 222 APLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRL 276

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 4e-10
 Identities = 48/231 (20%), Positives = 75/231 (32%), Gaps = 7/231 (3%)

Query: 76  LDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELR 135
           + L GN    +       +  NL  L L     A         L+ L          +LR
Sbjct: 37  IFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ-LDLSDNAQLR 94

Query: 136 VEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANF 195
             D +   G   L  L      L +      +   L +L+ L L    L         + 
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQE--LGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 196 SSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYN 255
            +L  L L GN    +       GL  L  L L  N      P  F++L  L  L L  N
Sbjct: 153 GNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 256 QFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
             ++  ++  +    L+YL L  N       +  L    +++    S +E+
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEV 260

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 55/299 (18%), Positives = 83/299 (27%), Gaps = 40/299 (13%)

Query: 87  QIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPS 146
            +P  I +    + + L G   +           NL  L     +  +     +      
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILW---LHSNVLARIDAAAFTGL 79

Query: 147 LLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGN 206
            L        +    S      + L  L  L L  C L    P      ++L  L L  N
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139

Query: 207 LFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFS 266
              +         L +L  L L  N         F+ L SL  L L  N+        F 
Sbjct: 140 AL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 267 NFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELE 326
           +   L  L L  N     + +  L  L  ++ L L+ N    D                 
Sbjct: 199 DLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWVCD----------------- 240

Query: 327 SLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNG 385
                 C+          L+  L     S + V   LP     L+      L+ N+L G
Sbjct: 241 ------CRA-------RPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (171), Expect = 2e-13
 Identities = 56/461 (12%), Positives = 105/461 (22%), Gaps = 38/461 (8%)

Query: 296 IKTLDLSFNELG-QDISEILDIISACAAFELESLFLRGCKISGQ----LTNQLGLFKNLH 350
           I++LD+   EL     +E+L ++  C     + + L  C ++      +++ L +   L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQC-----QVVRLDDCGLTEARCKDISSALRVNPALA 58

Query: 351 TLALSDNSVSGPLPPASGEL-----SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG 405
            L L  N +         +        +  L L N  L G    +    L  L       
Sbjct: 59  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 118

Query: 406 NSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW 465
            S N   ++      + L                L +                  P    
Sbjct: 119 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA--------------SCEPLASV 164

Query: 466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPF 525
                D       N            +     P  +  L          N       V  
Sbjct: 165 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 224

Query: 526 ENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDV 585
           +   + +AL   +   VG      G      R+  L   +              L+  + 
Sbjct: 225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 284

Query: 586 AYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSIL 645
                             +         +          +     S            + 
Sbjct: 285 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 344

Query: 646 NLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSF----IGKIPETIGNMRSIESLDL 701
             + +  +                  L+ L L+           +  T+    S+  LDL
Sbjct: 345 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 404

Query: 702 SGNQISGKIPQSMSS-----LSFLNHLNLSDNKLVGKIPSS 737
           S N +       +          L  L L D     ++   
Sbjct: 405 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 4e-07
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 645 LNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSF----IGKIPETIGNMRSIESL 699
           L++ +S+DI     S     E+   L+  Q + L            I   +    ++  L
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 700 DLSGNQISGKIPQSMSSLSFLNHLNLSDNKL 730
           +L  N++       +          +    L
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 43/415 (10%), Positives = 98/415 (23%), Gaps = 13/415 (3%)

Query: 197 SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRG----PIPDGFKNLTSLRYLDL 252
            + +LD+             +  L     + L            I    +   +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 253 SYNQFNSTISDCF-----SNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELG 307
             N+       C      +    ++ LSL    L G    +    L  + TL        
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 308 QDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS 367
                 L ++          L     +             ++         ++      +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 368 GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRL 427
                +    L ++       ++    +T        G   +     +       L    
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 428 RSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLN 487
            +             +           +    + R          +        D     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 488 LGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPT 547
           L          +    + S        +  S ++          ++ +  E+  V  +  
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 548 WMGERFSRLRILNLRSNKLHGIFPIQIC----HLSSLQILDVAYNRLSGSVPKCI 598
            +G+  S LR+L L    +       +        SL+ LD++ N L  +    +
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 58/460 (12%), Positives = 118/460 (25%), Gaps = 28/460 (6%)

Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL--HHFAPLASA--NFSSLNALDL 203
           ++ LD    + +  + W  ++  L   +V++L  C L       ++SA     +L  L+L
Sbjct: 4   IQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 204 SGNLFGKTSIPSWVFGLSD----LVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNS 259
             N  G   +   + GL      +  L L +    G       +         +  + + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP---TLQELHL 119

Query: 260 TISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISA 319
           + +        L    L   + +     +   +L+      L+     +   + L + + 
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 320 CAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLS 379
                   +  +G K S      L L     T     +        AS    +L    L 
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 380 NNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSW 439
           +  +  +   +   +      +                      +L+  S          
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 440 LHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPI 499
                              +    F  +           N   L +    N      +  
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 500 SMGTL----TSLRSLNLRSNRLSGI----IPVPFENCSQLVALDMGENEFVGNIPTWMGE 551
               L    + LR L L    +S      +         L  LD+  N         + E
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 552 RF----SRLRILNLRSNKLHGIFPIQICHLS----SLQIL 583
                   L  L L           ++  L     SL+++
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 50/460 (10%), Positives = 115/460 (25%), Gaps = 30/460 (6%)

Query: 73  LNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGF----AGWIPHQLGNLSNLMHLDLS 128
           +  LD+   +    +  E +  +   + + L   G        I   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 129 GSYYELRVEDISWLAGPSLLEHLDTSDVDL-IKASDWLLVINSLPSLKVLKLFSCKLHHF 187
            +     + D+        L+        L ++          + S  +  L + +  H 
Sbjct: 64  SN----ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 188 APLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSL 247
           +     +       +   +   +       +        +  +++ R         +++ 
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 248 RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELG 307
              +         + D     + L+  S G            + +   ++ L L  N+LG
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 308 QDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS 367
                 L       +  L +L++  C I    T +          A              
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGI----TAKGCGDLCRVLRAKESLKELSLAGNEL 295

Query: 368 GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRL 427
           G+  +    +        + S          A      + +        +          
Sbjct: 296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 355

Query: 428 RSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLN 487
               L           + L    +++  +SD              +    +    LR L+
Sbjct: 356 GVRELCQGLGQPGSVLRVL---WLADCDVSDSSCSS---------LAATLLANHSLRELD 403

Query: 488 LGNNKFTGSIPISMGT-----LTSLRSLNLRSNRLSGIIP 522
           L NN    +  + +          L  L L     S  + 
Sbjct: 404 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 28/181 (15%), Positives = 47/181 (25%), Gaps = 8/181 (4%)

Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
            L K+   L LS+N +           + LT L+L    L  +  +     L  L   + 
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87

Query: 404 NG------NSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRIS 457
                         +    V   +L +L L +                L  L       +
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 458 DIIPRWFWNSI-YQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNR 516
             + +    +    +          +L  L L  N    +IP        L    L  N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 517 L 517
            
Sbjct: 207 W 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 5e-10
 Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 35/235 (14%)

Query: 474 PDCWMNW-PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLV 532
           P C ++       +N      T ++P  +        L+L  N L           ++L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 533 ALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSG 592
            L++   E                                    L  L  LD+++N+L  
Sbjct: 59  QLNLDRAEL---------------------------TKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 593 SVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSI---LNLVR 649
                           S +++ ++   +      ++E+ L           +      + 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 650 SIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGN 704
            + ++ NN +      +  L+ L +L L  NS    IP+       +    L GN
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 34/206 (16%), Positives = 58/206 (28%), Gaps = 20/206 (9%)

Query: 194 NFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLS 253
             +S   ++        T++P  +    D   L LS N+            T L  L+L 
Sbjct: 8   KVASHLEVNCDKR--NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 254 YNQ---------------FNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKT 298
             +                + + +   S     + L               L        
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 299 LDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNS 358
            +L    L  +  + L         +LE L L    ++      L   +NL TL L +NS
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 359 VSGPLPPASGELSSLTYLDLSNNNLN 384
           +   +P        L +  L  N   
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 6e-08
 Identities = 44/207 (21%), Positives = 67/207 (32%), Gaps = 13/207 (6%)

Query: 76  LDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELR 135
           ++    +     +P  +    +   L+LS      +    L   + L  L+L  +     
Sbjct: 15  VNCDKRNLT--ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-- 68

Query: 136 VEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANF 195
                 L     L  L T D+   +     L+  +LP+L VL +   +L      A    
Sbjct: 69  -----KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 196 SSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYN 255
             L  L L GN   KT  P  +     L  L L++N            L +L  L L  N
Sbjct: 124 GELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 256 QFNSTISDCFSNFDDLEYLSLGYNRLQ 282
               TI   F     L +  L  N   
Sbjct: 183 SL-YTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 30/197 (15%), Positives = 47/197 (23%), Gaps = 19/197 (9%)

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
              T L LS N L    S       T L     +   +             +L     S 
Sbjct: 31  KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQ---VDGTLPVLGTLDLSH 86

Query: 431 HLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN 490
           +     P    +   L+ LD+S  R++ +             +         L    L  
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 491 NKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMG 550
                 + ++              N L+ +          L  L + EN     IP    
Sbjct: 147 TPKLEKLSLAN-------------NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192

Query: 551 ERFSRLRILNLRSNKLH 567
                L    L  N   
Sbjct: 193 -GSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 7e-05
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 665 EVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLN 724
           EV+ +     +N    +    +P  +   +    L LS N +      ++   + L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 725 LSDNK 729
           L   +
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 34/202 (16%), Positives = 63/202 (31%), Gaps = 20/202 (9%)

Query: 220 LSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
           ++  + ++         +P           L LS N   +        +  L  L+L   
Sbjct: 9   VASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 280 RLQGTISSIGLENLTFIKTLDLSFNELGQDISEI---------------LDIISACAAFE 324
            L        L  L  +         L      +               L + +     E
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 325 LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384
           L+ L+L+G ++       L     L  L+L++N+++         L +L  L L  N+L 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 385 GMISEIHFGNLTELAFFYANGN 406
            +     F     L F + +GN
Sbjct: 186 TIPKG--FFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 32/204 (15%), Positives = 65/204 (31%), Gaps = 4/204 (1%)

Query: 551 ERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIG-S 609
            + +    +N     L  + P  +       IL ++ N L       +  +T +  +   
Sbjct: 7   SKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 610 HHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNL 669
             ++  +            ++S      +      L  +  +D+S N  +      +  L
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 670 KGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNK 729
             LQ L L  N      P  +     +E L L+ N ++      ++ L  L+ L L +N 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 730 LVGKIPSSTQLQSFGASSITGNDL 753
           L               + + GN  
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 33/224 (14%), Positives = 62/224 (27%), Gaps = 24/224 (10%)

Query: 368 GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLAL-R 426
            +++S   ++    NL  +  ++   + T L   + + N +             L+   R
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDL-PKDTTIL---HLSENLL------YTFSLATLMPYTR 56

Query: 427 LRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVL 486
           L   +L     + L     L  L   +   + +                           
Sbjct: 57  LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR----- 111

Query: 487 NLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIP 546
                  T     ++  L  L+ L L+ N L  + P       +L  L +  N       
Sbjct: 112 ------LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165

Query: 547 TWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRL 590
             +      L  L L+ N L+ I P        L    +  N  
Sbjct: 166 GLLN-GLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 30/191 (15%), Positives = 50/191 (26%), Gaps = 10/191 (5%)

Query: 44  NITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNL 103
           ++      L+L  + L       L+    L  L+L   +   +Q+      +  L  L+L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT---LPVLGTLDL 84

Query: 104 SGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASD 163
           S               +  +          L +  +  L     L         L     
Sbjct: 85  SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 164 WLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL 223
                          L +  L            +L+ L L  N     +IP   FG   L
Sbjct: 145 TPTPKLEKL-----SLANNNLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLL 197

Query: 224 VFLDLSSNIFR 234
            F  L  N + 
Sbjct: 198 PFAFLHGNPWL 208

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.9 bits (141), Expect = 3e-10
 Identities = 31/213 (14%), Positives = 75/213 (35%), Gaps = 8/213 (3%)

Query: 324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
               +      ++  +T        + TL+     V+         L++L  L+L +N +
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75

Query: 384 NGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQ 443
             +    +   +TEL        +V+     + +    L + ++          +     
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 444 KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT 503
             L+++   +        ++      Q +      N   L  L   +NK +   P+   +
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL--AS 193

Query: 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDM 536
           L +L  ++L++N++S +   P  N S L  + +
Sbjct: 194 LPNLIEVHLKNNQISDVS--PLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 28/222 (12%), Positives = 71/222 (31%), Gaps = 27/222 (12%)

Query: 524 PFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQIL 583
           P    +  + +  G++     +          +  L+     +  I  +Q  +L++L  L
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGL 68

Query: 584 DVAYNRLSGS------------------VPKCINNFTAMATIGSHHQVKAIYHASFENDY 625
           ++  N+++                    +          +          I   +     
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 626 IVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGK 685
              ++  +    +   + +  L     +S+ N        + NL  L +L    N     
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 686 IPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD 727
            P  + ++ ++  + L  NQIS   P  +++ S L  + L++
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 15/215 (6%)

Query: 49  VLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGF 108
            +++   +S +   +     DL  +  L   G     I   E +  ++NL  L L     
Sbjct: 21  AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKDNQI 75

Query: 109 AGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVI 168
               P +       + L  +       +  +  +    L     T    L   S+  ++ 
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 169 NSLPSLKVLKLFSCK-------LHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLS 221
             L  +  +   +         + +         ++L+ L        K S  S +  L 
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLP 195

Query: 222 DLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQ 256
           +L+ + L +N      P    N ++L  + L+ NQ
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 23/212 (10%), Positives = 54/212 (25%), Gaps = 48/212 (22%)

Query: 346 FKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTEL------- 398
             N   +A   ++V+  +  A  +L  +T L      +  +    +  NL  L       
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

Query: 399 -----------AFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLS 447
                              +    +++              +        + L + + L 
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 448 KLDISNTRISDIIPRWFWNSIYQDTIPDCWMNW--------------------------P 481
                 T IS +        +         +                            P
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLP 195

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLR 513
           +L  ++L NN+ +   P++    ++L  + L 
Sbjct: 196 NLIEVHLKNNQISDVSPLA--NTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 24/217 (11%), Positives = 53/217 (24%), Gaps = 22/217 (10%)

Query: 97  NLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDV 156
           N   +    +     +     +L  +  L   G+     V  I  +   + L  L+  D 
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT----GVTTIEGVQYLNNLIGLELKDN 73

Query: 157 DLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTS---- 212
            +   +    +                       +       +            S    
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 213 -------IPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCF 265
                  I +            LS    +        NL+ L  L    N+ +       
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 266 SNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLS 302
           ++  +L  + L  N++        L N + +  + L+
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLT 225

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 32/269 (11%), Positives = 87/269 (32%), Gaps = 19/269 (7%)

Query: 484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVG 543
           + L+L        +   + +   + +     + +   +   F +  ++  +D+  +    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60

Query: 544 NIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDV------------AYNRLS 591
           +    +  + S+L+ L+L   +L       +   S+L  L++                  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 592 GSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSI 651
             + +   ++    T        A    +     +      + K  +         +  +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 652 DISMN-NFSGEIPMEVTNLKGLQSLNLSHNSFI-GKIPETIGNMRSIESLDLSGNQISGK 709
           D+S +     +   E   L  LQ L+LS    I  +    +G + ++++L + G    G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 710 IPQSMSSLSFLNHLNLSDNKLVGKIPSST 738
           +     +L    HL ++ +        + 
Sbjct: 241 LQLLKEALP---HLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 40/274 (14%), Positives = 74/274 (27%), Gaps = 9/274 (3%)

Query: 327 SLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGM 386
           +L L G  +   +T +L L + +       + +  PL         + ++DLSN+ +   
Sbjct: 4   TLDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 61

Query: 387 ISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHL 446
                    ++L      G  ++  I +       L+ L L  C  G    +        
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSC 120

Query: 447 SKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTS 506
           S+LD  N                                 NL  +  +  +      +  
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 507 LRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKL 566
             S +     L       F   + L  L +     +             L+ L +     
Sbjct: 181 DLSDS---VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVP 237

Query: 567 HGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600
            G   +    L  LQI     +  +      I N
Sbjct: 238 DGTLQLLKEALPHLQINC---SHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 42/240 (17%), Positives = 80/240 (33%), Gaps = 6/240 (2%)

Query: 38  GGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDN 97
             V    ++  V+     RS +   +       + +  +DLS +  +   +   +     
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSK 72

Query: 98  LRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVD 157
           L+ L+L G   +  I + L   SNL+ L+LSG          + L+  S L+ L+ S   
Sbjct: 73  LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 132

Query: 158 LIKASDWLLVI----NSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSI 213
                   + +     ++  L +                    +L  LDLS ++  K   
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 192

Query: 214 PSWVFGLSDLVFLDLSS-NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE 272
               F L+ L  L LS               + +L+ L +     + T+         L+
Sbjct: 193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 30/308 (9%), Positives = 87/308 (28%), Gaps = 63/308 (20%)

Query: 226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285
           LDL+       +     +   +       +  +  +++ FS F  ++++ L  + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI---- 58

Query: 286 SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGL 345
                                  ++S +  I+S C                         
Sbjct: 59  -----------------------EVSTLHGILSQC------------------------- 70

Query: 346 FKNLHTLALSDNSVSGPLPPASGELSSLTYLDL-SNNNLNGMISEIHFGNLTELAFFYAN 404
              L  L+L    +S P+     + S+L  L+L   +  +    +    + + L     +
Sbjct: 71  -SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 129

Query: 405 GNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWF 464
                 + + +                   +   +  + +      +     + +     
Sbjct: 130 WCFDFTEKHVQVAVAHV------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 465 WNSIYQDTIPDCWMNWPDLRVLNLGN-NKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPV 523
            + + ++     +     L+ L+L           + +G + +L++L +      G + +
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 524 PFENCSQL 531
             E    L
Sbjct: 244 LKEALPHL 251

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 17/92 (18%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 647 LVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQI 706
           L +++D++  N   ++   + +  G+ +     +     + E     R ++ +DLS + I
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI 58

Query: 707 SGK-IPQSMSSLSFLNHLNLSDNKLVGKIPSS 737
               +   +S  S L +L+L   +L   I ++
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 41/251 (16%), Positives = 79/251 (31%), Gaps = 26/251 (10%)

Query: 374 TYLDLSNNNLNGMISEIHFGNLTELAFFYAN-GNSVNFKINSKWVPPFQLLALRLRSCHL 432
             LDL+  NL+  +     G L            S   +  ++   PF++  + L +  +
Sbjct: 3   QTLDLTGKNLHPDV----TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 58

Query: 433 GP-HFPSWLHSQKHLSKLDISNTRISDIIPR-------------WFWNSIYQDTIPDCWM 478
                   L     L  L +   R+SD I                  +   +  +     
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 479 NWPDLRVLNLGNNKFTG------SIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLV 532
           +   L  LNL             ++     T+T L     R N     +      C  LV
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 533 ALDMGENEFVGNIPTWMGERFSRLRILNL-RSNKLHGIFPIQICHLSSLQILDVAYNRLS 591
            LD+ ++  + N       + + L+ L+L R   +     +++  + +L+ L V      
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 592 GSVPKCINNFT 602
           G++        
Sbjct: 239 GTLQLLKEALP 249

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 6/218 (2%)

Query: 186 HFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN-IFRGPIPDGFKNL 244
           +  P  +    S   +             +  F    +  +DLS++ I    +       
Sbjct: 11  NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 70

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
           + L+ L L   + +  I +  +   +L  L+L       +  ++     +  +  +L+ +
Sbjct: 71  SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF-SEFALQTLLSSCSRLDELNLS 129

Query: 305 ELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLP 364
                  + + +  A  +  +  L L G + + Q ++   L +    L   D S S  L 
Sbjct: 130 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 189

Query: 365 PAS----GELSSLTYLDLSNNNLNGMISEIHFGNLTEL 398
                   +L+ L +L LS        + +  G +  L
Sbjct: 190 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 27/189 (14%), Positives = 61/189 (32%), Gaps = 6/189 (3%)

Query: 346 FKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG 405
                   L   +V+  +     +L  +T L      +  +    +  NLT++ F     
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 74

Query: 406 NSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW 465
             +    N   +    +   ++       +  +        +++   +   +        
Sbjct: 75  TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134

Query: 466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPF 525
            S    +          L+ LN  +N+ T   P+    LT+L  L++ SN++S I     
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNKVSDIS--VL 190

Query: 526 ENCSQLVAL 534
              + L +L
Sbjct: 191 AKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 20/200 (10%), Positives = 66/200 (33%), Gaps = 13/200 (6%)

Query: 524 PFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQIL 583
                ++ +   +G+      +         ++  L      +  I  ++  +L++L  +
Sbjct: 13  TDTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSIDGVE--YLNNLTQI 67

Query: 584 DVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNS 643
           + + N+L+      I     +  +                  +     L +    +    
Sbjct: 68  NFSNNQLTD-----ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 122

Query: 644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSG 703
            L  + +++    + +    +   +           ++ +  +   + N+ ++E LD+S 
Sbjct: 123 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISS 181

Query: 704 NQISGKIPQSMSSLSFLNHL 723
           N++S      ++ L+ L  L
Sbjct: 182 NKVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 20/192 (10%)

Query: 219 GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY 278
            L++ +   L        +     +L  +  L        S   D     ++L  ++   
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 71

Query: 279 NRLQGTI------------SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELE 326
           N+L                 +              +   L    ++I DI        L 
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 327 SLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGM 386
            L L    IS                + +  +   PL      L++L  LD+S+N ++ +
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPL----ANLTTLERLDISSNKVSDI 187

Query: 387 ISEIHFGNLTEL 398
                  NL  L
Sbjct: 188 SVLAKLTNLESL 199

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.6 bits (130), Expect = 6e-09
 Identities = 30/191 (15%), Positives = 66/191 (34%), Gaps = 6/191 (3%)

Query: 346 FKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG 405
           F       L   SV+  +     EL+S+  +  +N+++  +    +  N+T+L       
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80

Query: 406 NSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW 465
             +    N K +    L   +++                  + +   N  +        +
Sbjct: 81  TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140

Query: 466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPF 525
               + T          L  L+L +N+ +  +P++   LT L++L L  N +S +     
Sbjct: 141 LGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDL--RAL 196

Query: 526 ENCSQLVALDM 536
                L  L++
Sbjct: 197 AGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 3e-08
 Identities = 23/203 (11%), Positives = 68/203 (33%), Gaps = 13/203 (6%)

Query: 524 PFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQIL 583
             +  ++ +  ++ +      +        + +  +   ++ +  +  IQ  +L ++  L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKL 73

Query: 584 DVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNS 643
            +  N+L+    K + N   +  +           +  +   +            +    
Sbjct: 74  FLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSG 703
            L  + S+ +  N  +    +               ++ I  I   +  +  +++L LS 
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTK---LDTLSLEDNQISDIVP-LAGLTKLQNLYLSK 187

Query: 704 NQISGKIPQSMSSLSFLNHLNLS 726
           N IS    ++++ L  L+ L L 
Sbjct: 188 NHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 28/188 (14%), Positives = 58/188 (30%), Gaps = 12/188 (6%)

Query: 219 GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY 278
             ++ +  +L        +      L S+  +  + +   S          ++  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 279 NRLQGTISSIGLENLTFIKT--------LDLSFNELGQDISEILDIISACAAFELESLFL 330
           N+L        L+NL ++            L   +  + +S   + IS            
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 331 RGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEI 390
                + ++T+   L +      LS              L+ L  L LS N+++ + +  
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 197

Query: 391 HFGNLTEL 398
              NL  L
Sbjct: 198 GLKNLDVL 205

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 27/204 (13%), Positives = 55/204 (26%), Gaps = 28/204 (13%)

Query: 311 SEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGEL 370
             + D ++      ++ +      I       +    N+  L L+ N ++   P     L
Sbjct: 34  KSVTDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDIKP-----L 86

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
           ++L  L     + N +       +L +L       N ++                     
Sbjct: 87  ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI------------------N 128

Query: 431 HLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN 490
            L            +    DI+       +            I         L+ L L  
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA-GLTKLQNLYLSK 187

Query: 491 NKFTGSIPISMGTLTSLRSLNLRS 514
           N  +  +  ++  L +L  L L S
Sbjct: 188 NHIS-DLR-ALAGLKNLDVLELFS 209

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVG 543
           RVL+L +   T  +   +  L  +  L+L  NRL  + P        L  L   +N    
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 544 NIPTWMGERFSRLRILNLRSNKLHGIFPIQ-ICHLSSLQILDVAYNRLSG 592
                   R    + L L +N+L     IQ +     L +L++  N L  
Sbjct: 58  VDGVANLPRL---QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 6/118 (5%)

Query: 201 LDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNST 260
           L L+       ++   +  L  +  LDLS N  R   P     L  L  L  S N   + 
Sbjct: 3   LHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 261 ISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIIS 318
                      + L L  NRLQ + +   L +   +  L+L  N L Q+      +  
Sbjct: 59  DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 437 PSWLHSQKHLSKLDISNTRISDIIP--------RWFWNSIYQDTIPDCWMNWPDLRVLNL 488
              L     ++ LD+S+ R+  + P             S       D   N P L+ L L
Sbjct: 13  LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLL 72

Query: 489 GNNKFTGSIPI-SMGTLTSLRSLNLRSNRLSGIIPVP 524
            NN+   S  I  + +   L  LNL+ N L     + 
Sbjct: 73  CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 351 TLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNF 410
            L L+   ++        +L  +T+LDLS+N L  +        L  L    A+ N++  
Sbjct: 2   VLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALEN 57

Query: 411 KINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
                 +P  Q L L              L S   L  L++    +   
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 24/116 (20%)

Query: 649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIP--------------------- 687
           R + ++  + +  +   +  L  +  L+LSHN      P                     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 688 ETIGNMRSIESLDLSGNQI-SGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQS 742
           + + N+  ++ L L  N++      Q + S   L  LNL  N L  +     +L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 14/116 (12%)

Query: 248 RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIG-LENLTFIKTLDLSFNEL 306
           R L L++     T+         + +L L +NRL+    ++  L  L  ++         
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ--------- 49

Query: 307 GQDISEILDIISACAAFELESLFLRGCKI-SGQLTNQLGLFKNLHTLALSDNSVSG 361
               + + ++        L+ L L   ++        L     L  L L  NS+  
Sbjct: 50  -ASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 4e-08
 Identities = 28/255 (10%), Positives = 68/255 (26%), Gaps = 23/255 (9%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
             RV     +K T  IP  +    +   L     +L  I    F     L  +++ +N+ 
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 542 VGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNF 601
           +  I   +     +L  + +           +                        +   
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ-----------------NLPNLQYL 108

Query: 602 TAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE 661
               T   H       H+  +    +++   +       +  +      + ++ N     
Sbjct: 109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 168

Query: 662 IPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLN 721
                   +  +     +N+      +          LD+S  +I       + +L  L 
Sbjct: 169 HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 228

Query: 722 HLNLSDNKLVGKIPS 736
             +  + K   K+P+
Sbjct: 229 ARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 3e-07
 Identities = 30/207 (14%), Positives = 51/207 (24%), Gaps = 14/207 (6%)

Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
            L +N   L      +      A      L  +++S N++  +I    F NL +L     
Sbjct: 26  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 85

Query: 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRW 463
              +    IN +       L   L S     H P           L      I+      
Sbjct: 86  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 464 FWNS--------------IYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRS 509
                               Q+     +       +    NN             +    
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 205

Query: 510 LNLRSNRLSGIIPVPFENCSQLVALDM 536
           L++   R+  +     EN  +L A   
Sbjct: 206 LDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 28/219 (12%), Positives = 58/219 (26%), Gaps = 11/219 (5%)

Query: 367 SGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALR 426
           S    +   L      L   I +  F    +L     + N V   I +            
Sbjct: 25  SDLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL------ 77

Query: 427 LRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVL 486
                L        ++  +++     N      +        +   +         L  +
Sbjct: 78  ---PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 134

Query: 487 NLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIP 546
               N  T      +G       L L  N +  I    F         ++ +N  +  +P
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL-NLSDNNNLEELP 193

Query: 547 TWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDV 585
             +    S   IL++   ++H +    + +L  L+    
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 30/242 (12%), Positives = 58/242 (23%), Gaps = 17/242 (7%)

Query: 35  CEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGS 94
           C     +C       +  +L                ++   L       + I        
Sbjct: 8   CSNRVFLCQESKVTEIPSDL---------------PRNAIELRFVLTKLRVI-QKGAFSG 51

Query: 95  MDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTS 154
             +L  + +S       I   + +    +H         L   +         L++L  S
Sbjct: 52  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 111

Query: 155 DVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIP 214
           +  +    D   + +    L  ++                      L L+ N   +    
Sbjct: 112 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHN 170

Query: 215 SWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYL 274
               G          +N       D F   +    LD+S  + +S  S    N   L   
Sbjct: 171 CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230

Query: 275 SL 276
           S 
Sbjct: 231 ST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 213 IPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQ 256
           +P+ VF G S  V LD+S          G +NL  LR       +
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.8 bits (122), Expect = 2e-07
 Identities = 35/331 (10%), Positives = 72/331 (21%), Gaps = 18/331 (5%)

Query: 222 DLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFN----STISDCFSNFDDLEYLSLG 277
            L    +++   +  +        S++ + LS N         +S+  ++  DLE     
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 278 YNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISG 337
                  +     E L  +    L   +L                  ++ L         
Sbjct: 68  DIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 338 QLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTE 397
            L N            ++       +   +     L  +    N L     +        
Sbjct: 127 YLHNNG--LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 398 LAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRIS 457
               +      N                  +   +     +        +      +  +
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 458 DIIPRWFWNSIYQDTIPDCW-----MNWPDLRVLNLGNNKFTGSIPISMGT-----LTSL 507
                     +              +    L+ L L  N+       ++ T     +  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 508 RSLNLRSNRLSGIIPVPFENCSQLVALDMGE 538
             L L  NR S    V  E          GE
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 3e-05
 Identities = 28/313 (8%), Positives = 77/313 (24%), Gaps = 15/313 (4%)

Query: 436 FPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTG 495
             + L     + ++ +S   I     RW         + +   +  DL +    +     
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARW---------LSENIASKKDLEIAEFSDIFTGR 73

Query: 496 SIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555
                   L  L    L+  +L  +               +        +          
Sbjct: 74  VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 133

Query: 556 LRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKA 615
                 +  +      +     ++  +  +   R                +    H VK 
Sbjct: 134 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 193

Query: 616 IYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSL 675
           + +           +  +     ++   + +   +   S                GL   
Sbjct: 194 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 253

Query: 676 NLSHNSFIGKI-PETIGNMRSIESLDLSGNQISGKIPQSMSS-----LSFLNHLNLSDNK 729
            LS       +   +      +++L L  N+I     +++ +     +  L  L L+ N+
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313

Query: 730 LVGKIPSSTQLQS 742
              +     +++ 
Sbjct: 314 FSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 49/313 (15%), Positives = 94/313 (30%), Gaps = 21/313 (6%)

Query: 44  NITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQG---IQIPEYIGSMDNLRY 100
           +I G  L+L+   +E    +   L++   +  + LSGN         + E I S  +L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 101 LNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIK 160
              S              L  L+   L            +     +    +D        
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 161 ASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGL 220
              +L      P     K+            + N   L ++    N     S+  W    
Sbjct: 124 EHLYLHNNGLGPQ-AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 221 SDLVFLDLSSNIFRGPIPDGFKNLTSL------------RYLDLSYNQFNSTISDCFSNF 268
                L     +  G  P+G ++L                  +   +  +S ++    ++
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 269 DDLEYLSLGYNRLQGTISSIGLENLTF-----IKTLDLSFNELGQDISEILDIISACAAF 323
            +L  L L    L    ++  ++  +      ++TL L +NE+  D    L  +      
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 324 ELESLFLRGCKIS 336
           +L  L L G + S
Sbjct: 303 DLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 41/304 (13%), Positives = 74/304 (24%), Gaps = 37/304 (12%)

Query: 321 AAFELESLFLRGCKISGQ----LTNQLGLFKNLHTLALSDNSVSGP----LPPASGELSS 372
           A F +E   L+   I+ +    +   L    ++  + LS N++       L         
Sbjct: 1   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60

Query: 373 LTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHL 432
           L   + S+     +  EI       L            +++     P     L       
Sbjct: 61  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120

Query: 433 GPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNK 492
            P    +LH+                        ++ +  +     N P LR +  G N+
Sbjct: 121 TPLEHLYLHNNGL-----------GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 169

Query: 493 FTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVAL------------DMGENE 540
                            L      +   I         L  L            D     
Sbjct: 170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 229

Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQI------CHLSSLQILDVAYNRLSGSV 594
              +      + +  LR L L    L       +           LQ L + YN +    
Sbjct: 230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 289

Query: 595 PKCI 598
            + +
Sbjct: 290 VRTL 293

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 670 KGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGK----IPQSMSSLSFLNHLNL 725
           K L+   ++       +   +    S++ + LSGN I  +    + ++++S   L     
Sbjct: 8   KSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 726 SDNKL 730
           SD   
Sbjct: 67  SDIFT 71

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 50/347 (14%), Positives = 92/347 (26%), Gaps = 34/347 (9%)

Query: 71  KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLS----GAGFAGWIPHQLGNLSNLMHLD 126
           K L L  ++  D +   +   +   D+++ + LS    G   A W+   + +  +L   +
Sbjct: 8   KSLKLDAITTEDEK--SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 127 LSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH 186
            S  +   RV+D    A   LL+ L                  +     +  L       
Sbjct: 66  FSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 187 FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTS 246
              L +          ++  L                  +   + +  G + +  K   S
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 247 LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
            R L       N    +   +              +G      L+ L             
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLL-----------EGLAYCQELKVLDLQDNTFTHLGSS 233

Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA 366
              I+                L  RG        ++L     L TL L  N +       
Sbjct: 234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE-NIGLQTLRLQYNEIELDAVRT 292

Query: 367 -----SGELSSLTYLDLSNNN----------LNGMISEIHFGNLTEL 398
                  ++  L +L+L+ N           +  + S    G L EL
Sbjct: 293 LKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 47/338 (13%), Positives = 94/338 (27%), Gaps = 24/338 (7%)

Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
                L+L+     S++ +   +   LE L    N L          +L  +   + +  
Sbjct: 38  RQAHELELNNLGL-SSLPELPPH---LESLVASCNSLTELPELPQ--SLKSLLVDNNNLK 91

Query: 305 ELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLP 364
            L      +  +  +    E     L   + S  L        +L  L     S+     
Sbjct: 92  ALSDLPPLLEYLGVSNNQLE----KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 365 PASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLA 424
             +         +L         +              +     N       +     L 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 425 LRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLR 484
                 +L    P    S + L+  D   T + ++     +  + ++         P+L 
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 485 VLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGN 544
            LN  +N+      +      SL  LN+ +N+L  +         +L  L    N     
Sbjct: 268 YLNASSNEIRSLCDL----PPSLEELNVSNNKLIEL----PALPPRLERLIASFNHL-AE 318

Query: 545 IPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQI 582
           +P         L+ L++  N L    P     +  L++
Sbjct: 319 VPELPQ----NLKQLHVEYNPLREF-PDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 50/342 (14%), Positives = 95/342 (27%), Gaps = 26/342 (7%)

Query: 261 ISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISAC 320
           + DC         L L    L    SS+  E    +++L  S N L    +E+ ++  + 
Sbjct: 32  LRDCLDR--QAHELELNNLGL----SSLP-ELPPHLESLVASCNSL----TELPELPQSL 80

Query: 321 AAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSN 380
            +  +++  L+       L   L      +        +         ++ + +   L +
Sbjct: 81  KSLLVDNNNLKALS---DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD 137

Query: 381 NNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWL 440
              +          L EL              ++  +     L L L S   G +    L
Sbjct: 138 LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL 197

Query: 441 HSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPIS 500
              ++L  L       + +          +                   +  F       
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENI 255

Query: 501 MGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN 560
              L+ L       N  S  I    +    L  L++  N+ +  +P        RL  L 
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL----PPRLERLI 310

Query: 561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFT 602
              N L  +  +      +L+ L V YN L    P    +  
Sbjct: 311 ASFNHLAEVPEL----PQNLKQLHVEYNPLR-EFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 9e-05
 Identities = 44/329 (13%), Positives = 89/329 (27%), Gaps = 39/329 (11%)

Query: 443 QKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMG 502
            +   +L+++N  +S              ++P+     P L  L    N  T  +P    
Sbjct: 37  DRQAHELELNNLGLS--------------SLPELP---PHLESLVASCNSLT-ELPELPQ 78

Query: 503 TLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLR 562
           +L SL   N     LS + P+          L+        +    +    + L+ L   
Sbjct: 79  SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL 138

Query: 563 SNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK--------------CINNFTAMATIG 608
              L  I           ++ ++ +     +                  +     +  + 
Sbjct: 139 PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP 198

Query: 609 SHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTN 668
               +  +     +N+ +     L      +                  F        + 
Sbjct: 199 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 258

Query: 669 LKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDN 728
           L  L       N+   +I        S+E L++S N++  ++P     L     L  S N
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFN 314

Query: 729 KLVGKIPSSTQLQSFGASSITGNDLCGAP 757
            L         L+      +  N L   P
Sbjct: 315 HLAEVPELPQNLKQL---HVEYNPLREFP 340

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 163 DWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSD 222
           +   + +  PSL+ L + + KL        A    L  L  S N      +P       +
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLIEL----PALPPRLERLIASFNHL--AEVPEL---PQN 325

Query: 223 LVFLDLSSNIFRGPIPDGFKNLTSLR 248
           L  L +  N  R   PD  +++  LR
Sbjct: 326 LKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 48/371 (12%), Positives = 99/371 (26%), Gaps = 77/371 (20%)

Query: 345 LFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF---- 400
           L +  H L L++  +S  LP        L  L  S N+L  +           +      
Sbjct: 36  LDRQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK 91

Query: 401 -FYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKL-------DIS 452
                   + +   S                 +     + L     L          +  
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 453 NTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNL 512
              + ++    F  +IY D      +    L + ++            +  L  L ++  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 513 RSNRLSGIIPVPF-------ENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNK 565
            +N L  +  +P         +       ++ ++    ++   +    S L       N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 566 LHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDY 625
                        SL+ L+V+ N+L   +P                              
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR------------------------- 305

Query: 626 IVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSF--I 683
                                 +  +  S N+ + E+P    NLK    L++ +N     
Sbjct: 306 ----------------------LERLIASFNHLA-EVPELPQNLK---QLHVEYNPLREF 339

Query: 684 GKIPETIGNMR 694
             IPE++ ++R
Sbjct: 340 PDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 179 LFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIP 238
            +     +          SL  L++S N      +P+       L  L  S N     +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKL--IELPAL---PPRLERLIASFNHLAE-VP 320

Query: 239 DGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDL 271
           +      +L+ L + YN       D   + +DL
Sbjct: 321 E---LPQNLKQLHVEYNPL-REFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 9/79 (11%)

Query: 228 LSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISS 287
              N     I        SL  L++S N+    +         LE L   +N L      
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPR---LERLIASFNHLAEVPEL 322

Query: 288 IGLENLTFIKTLDLSFNEL 306
               NL   K L + +N L
Sbjct: 323 PQ--NL---KQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 44/328 (13%), Positives = 89/328 (27%), Gaps = 16/328 (4%)

Query: 71  KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGS 130
           +  + L+L+        +PE      +L  L  S       +P    +L +L+  + +  
Sbjct: 38  RQAHELELNNLGLS--SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPL 190
                   + +L   +          +        +  NSL  L  L      +      
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 191 ASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYL 250
                   N   L+       S+         L  +   +NI             +  Y 
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 251 DLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDI 310
           D +  +    +       +  +        L  +++ + +    F    +L  N    + 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 311 SEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGEL 370
           S             LE L +       +L     L   L  L  S N ++  +P      
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNN----KLIELPALPPRLERLIASFNHLAE-VPE---LP 323

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTEL 398
            +L  L +  N L          ++ +L
Sbjct: 324 QNLKQLHVEYNPLREFPDIP--ESVEDL 349

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 23/157 (14%), Positives = 49/157 (31%), Gaps = 13/157 (8%)

Query: 371 SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSC 430
              T L L++N L  + S+  FG L  L       N +     + +     +  L+L   
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 431 HLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDL------- 483
            +             L  L++ + +IS ++P  F +     ++      +          
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148

Query: 484 ---RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRL 517
              R  +L         P     +  ++  +L  +  
Sbjct: 149 EWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 463 WFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIP 522
               +      P+ +     ++ L LG NK           L  L++LNL  N++S ++P
Sbjct: 60  ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119

Query: 523 VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQI 582
             FE+ + L +L++  N F  N        + R    +L         P     +  +QI
Sbjct: 120 GSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK--KSLNGGAARCGAP---SKVRDVQI 174

Query: 583 LDVAYNRL 590
            D+ ++  
Sbjct: 175 KDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 13/188 (6%)

Query: 197 SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQ 256
               +D +G   G   IP  +        L L+ N       DG                
Sbjct: 9   EGTTVDCTGR--GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN 64

Query: 257 FNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDI 316
             + I                       IS+     L  +KTL+L  N++   +    + 
Sbjct: 65  QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

Query: 317 ISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYL 376
           +++  +  L S             +     + L   +L+  +     P    ++  +   
Sbjct: 125 LNSLTSLNLASNPFNC------NCHLAWFAEWLRKKSLNGGAARCGAPS---KVRDVQIK 175

Query: 377 DLSNNNLN 384
           DL ++   
Sbjct: 176 DLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 28/210 (13%), Positives = 59/210 (28%), Gaps = 27/210 (12%)

Query: 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEF 541
           +   ++         IP  +        L L  N L  I           +     +   
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 542 VGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNF 601
           +  I     E  S ++ L L  NK+  I       L  L+ L++  N++S  +P    + 
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 602 TAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE 661
            ++ ++                                        +R   ++       
Sbjct: 126 NSLTSLNLASN---------------------PFNCNCHLAWFAEWLRKKSLNGGAARCG 164

Query: 662 IPMEVTNLKGLQSLNLSHNSFIGKIPETIG 691
            P   + ++ +Q  +L H+ F      + G
Sbjct: 165 AP---SKVRDVQIKDLPHSEFKCSSENSEG 191

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540
              + L+L   +        +        LN RS+  +  + +  EN  +L++L++  N 
Sbjct: 22  GSQQALDLKGLRSDPD----LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNR 76

Query: 541 FVGNIP-TWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCIN 599
                  + + ++   L+ILNL  N+L     +       L+ L +  N LS +      
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 600 NFTAM 604
             +A+
Sbjct: 137 YISAI 141

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 656 NNFSGEIPMEVTNLKGLQSLNLSHN--SFIGKIPETIGNMRSIESLDLSGNQISGKIPQS 713
           ++ +  + +   N+  L SLNLS+N    +  +   +    +++ L+LSGN++  +    
Sbjct: 51  SSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 110

Query: 714 MSSLSFLNHLNLSDNKLVGKIPSSTQLQSF 743
                 L  L L  N L       +   S 
Sbjct: 111 KIKGLKLEELWLDGNSLSDTFRDQSTYISA 140

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 6/136 (4%)

Query: 166 LVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVF 225
           L+++         L    L     L + N      L+   ++    ++      + +L+ 
Sbjct: 14  LIMSKRYDGSQQALDLKGLRSDPDLVAQNI--DVVLNRRSSMA--ATLRIIEENIPELLS 69

Query: 226 LDLSSNIFRG--PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQG 283
           L+LS+N       +    +   +L+ L+LS N+  S           LE L L  N L  
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129

Query: 284 TISSIGLENLTFIKTL 299
           T            +  
Sbjct: 130 TFRDQSTYISAIRERF 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 7e-05
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 665 EVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLN 724
           + TN    + L+L     I  I      +   +++D S N+I  +       L  L  L 
Sbjct: 13  QYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 69

Query: 725 LSDNKLVGKIP 735
           +++N++     
Sbjct: 70  VNNNRICRIGE 80

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 4/127 (3%)

Query: 51  ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
           EL+L   ++   I      L   + +D S N+ + +   +    +  L+ L ++      
Sbjct: 22  ELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICR 77

Query: 111 WIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINS 170
                   L +L  L L+ +      +     +  SL       +    K    L VI  
Sbjct: 78  IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK 137

Query: 171 LPSLKVL 177
           +P ++VL
Sbjct: 138 VPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 3/71 (4%)

Query: 479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGE 538
           N    R L+L   K    I     TL    +++   N +  +    F    +L  L +  
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNN 72

Query: 539 NEFVGNIPTWM 549
           N          
Sbjct: 73  NRICRIGEGLD 83

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 23/157 (14%), Positives = 37/157 (23%), Gaps = 16/157 (10%)

Query: 334 KISGQLTNQLGLFKN---LHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEI 390
           K++ +L  Q   + N      L L    +   +      L     +D S+N +  +    
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 391 HFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLD 450
               L  L                            L    L  +    L     L+ L 
Sbjct: 61  LLRRLKTLLVNNNRICR--------IGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 112

Query: 451 ISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLN 487
                     P           I       P +RVL+
Sbjct: 113 SLTYLCILRNPVTNKKHYRLYVIYKV----PQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 21/140 (15%), Positives = 38/140 (27%), Gaps = 4/140 (2%)

Query: 65  PALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH 124
               +      LDL G       I     ++D    ++ S              L  L  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKT 67

Query: 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL 184
           L ++ +      E +           L  + +  +   D L  + SL  L +L+      
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 185 HHFAPLASANFSSLNALDLS 204
            H+          +  LD  
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQ 147

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 14/172 (8%)

Query: 346 FKNLHTLALSDNSVSGPLPPAS------GELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
            K++         + G +PP          L +  +L LS NN+  + S     NL  L+
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILS 76

Query: 400 FFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
                    N     + +         L   +      S +    +L  L +SN +I++ 
Sbjct: 77  LGR------NLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW 130

Query: 460 IPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLN 511
                  ++ +        N   L      NN  +      +  L +L+ L+
Sbjct: 131 GEIDKLAALDKLEDLLLAGNP--LYNDYKENNATSEYRIEVVKRLPNLKKLD 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	790
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.35
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.05
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.03
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.03
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.79
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.22
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.95
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.64

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4.4e-34  Score=293.76  Aligned_cols=293  Identities=31%  Similarity=0.508  Sum_probs=186.1

Q ss_pred             CChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCc--ccCceeecCC--CCcEEEEEcCCCCCCc--cccccCcCCCCCCE
Q 047929            2 GCLESERVALIKLKQDFKDPSNHLASWIGDVDCC--EWGGVVCNNI--TGHVLELNLERSELGG--KINPALVDLKHLNL   75 (790)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~c~~~--~~~v~~L~L~~~~~~~--~~~~~l~~l~~L~~   75 (790)
                      .|+..|+.||++||+++.||. .+++|..++|||  .|.||.|+..  ..||++|+|+++++.+  .+|++++++++|++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence            599999999999999998774 689997778999  5999999754  3489999999998876  46778888888888


Q ss_pred             EeCCC-CCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECC
Q 047929           76 LDLSG-NDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTS  154 (790)
Q Consensus        76 L~Ls~-~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~  154 (790)
                      |+|++ |.+.+. +|+.|+++++|++|++++|++.+..+..+..+.+|+++++++|.                       
T Consensus        81 L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~-----------------------  136 (313)
T d1ogqa_          81 LYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-----------------------  136 (313)
T ss_dssp             EEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-----------------------
T ss_pred             cccccccccccc-cccccccccccchhhhccccccccccccccchhhhccccccccc-----------------------
Confidence            88876 666654 77778888888888888887777666666667777777666553                       


Q ss_pred             CCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCC-cEEEccCCcC
Q 047929          155 DVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL-VFLDLSSNIF  233 (790)
Q Consensus       155 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L-~~L~l~~~~~  233 (790)
                                                   +....+..+.++++|+++++++|.+.+ .+|..+..+..+ +.+++++|++
T Consensus       137 -----------------------------~~~~~p~~l~~l~~L~~l~l~~n~l~~-~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         137 -----------------------------LSGTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             -----------------------------EESCCCGGGGGCTTCCEEECCSSCCEE-ECCGGGGCCCTTCCEEECCSSEE
T ss_pred             -----------------------------ccccCchhhccCcccceeecccccccc-ccccccccccccccccccccccc
Confidence                                         222223334444445555555544433 344444444333 4455555554


Q ss_pred             CCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchh
Q 047929          234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEI  313 (790)
Q Consensus       234 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  313 (790)
                      .+..|..+..+..+ .+++..+...+..+..+.                         .+++++.+++.++.+...++  
T Consensus       187 ~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~-------------------------~~~~l~~l~~~~~~l~~~~~--  238 (313)
T d1ogqa_         187 TGKIPPTFANLNLA-FVDLSRNMLEGDASVLFG-------------------------SDKNTQKIHLAKNSLAFDLG--  238 (313)
T ss_dssp             EEECCGGGGGCCCS-EEECCSSEEEECCGGGCC-------------------------TTSCCSEEECCSSEECCBGG--
T ss_pred             cccccccccccccc-cccccccccccccccccc-------------------------cccccccccccccccccccc--
Confidence            44444444433322 344444444444444444                         44444444444444433222  


Q ss_pred             hhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCc
Q 047929          314 LDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNN  382 (790)
Q Consensus       314 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~  382 (790)
                          .+..+++|+.|++++|++++.+|..+..+++|++|+|++|++++.+|. ++.+++|+.+++++|+
T Consensus       239 ----~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         239 ----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             ----ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence                223344566666666666666666777777777777777777766663 4566666666666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=3.6e-29  Score=256.82  Aligned_cols=260  Identities=32%  Similarity=0.549  Sum_probs=229.8

Q ss_pred             CCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccC-CcccccCCcCCCCCCCCCEEEccCCcccccCCc
Q 047929          445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN-NKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPV  523 (790)
Q Consensus       445 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  523 (790)
                      +++.|+++++.+...           ..+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|++.+..+.
T Consensus        51 ~v~~L~L~~~~l~g~-----------~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~  119 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKP-----------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD  119 (313)
T ss_dssp             CEEEEEEECCCCSSC-----------EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred             EEEEEECCCCCCCCC-----------CCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc
Confidence            578888888876542           24667788899999999987 788888898999999999999999999998888


Q ss_pred             cccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCC-cEEEccCCcccccCCcchhccc
Q 047929          524 PFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSL-QILDVAYNRLSGSVPKCINNFT  602 (790)
Q Consensus       524 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L-~~L~ls~n~l~~~~p~~l~~l~  602 (790)
                      .+..++.|+.+++++|.+.+.+|..+. .++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+.
T Consensus       120 ~~~~~~~L~~l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~  198 (313)
T d1ogqa_         120 FLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             cccchhhhcccccccccccccCchhhc-cCcccceeeccccccccccccccccccccccccccccccccccccccccccc
Confidence            899999999999999999888888775 78999999999999998889888888775 8899999999988887665443


Q ss_pred             cccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcC
Q 047929          603 AMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSF  682 (790)
Q Consensus       603 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  682 (790)
                      .                                             ..++++++...+.+|..+..+++++.+++++|.+
T Consensus       199 ~---------------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         199 L---------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             C---------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             c---------------------------------------------cccccccccccccccccccccccccccccccccc
Confidence            2                                             3688899999888999999999999999999999


Q ss_pred             CcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcCCccCCccccCC-cccCCCCCCC
Q 047929          683 IGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAPLSNC  761 (790)
Q Consensus       683 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~~~~c  761 (790)
                      .+..| .+..+++|+.|++++|++++.+|+.|+.+++|++|++++|+++|.+|..+.+.+|+.+++.|| .+||.|++.|
T Consensus       234 ~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         234 AFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             ccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCCCC
Confidence            86654 688899999999999999999999999999999999999999999999888999999999999 7999999988


Q ss_pred             C
Q 047929          762 T  762 (790)
Q Consensus       762 ~  762 (790)
                      +
T Consensus       313 ~  313 (313)
T d1ogqa_         313 T  313 (313)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=1.4e-23  Score=222.16  Aligned_cols=191  Identities=27%  Similarity=0.418  Sum_probs=126.2

Q ss_pred             cCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCC
Q 047929          477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRL  556 (790)
Q Consensus       477 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  556 (790)
                      +..+++++.+++++|.+++..+  +..+++|++|++++|.++..  ..+..+++|+.+++++|.+.+..+  + ..+++|
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~-~~~~~L  265 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L-SGLTKL  265 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G-TTCTTC
T ss_pred             cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--c-cccccC
Confidence            3455677777777777665433  34456777777777776643  356667777777777777663322  2 356777


Q ss_pred             cEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeecc
Q 047929          557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKG  636 (790)
Q Consensus       557 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  636 (790)
                      ++|++++|++++..  .+..++.++.++++.|.+.+.  ..+.                                     
T Consensus       266 ~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~-------------------------------------  304 (384)
T d2omza2         266 TELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPIS-------------------------------------  304 (384)
T ss_dssp             SEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGG-------------------------------------
T ss_pred             CEeeccCcccCCCC--ccccccccccccccccccccc--cccc-------------------------------------
Confidence            77777777776432  355667777777777766531  1111                                     


Q ss_pred             chhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccC
Q 047929          637 FMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSS  716 (790)
Q Consensus       637 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~  716 (790)
                             .++.++.|++++|++.+..  .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|  +..
T Consensus       305 -------~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~  371 (384)
T d2omza2         305 -------NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LAN  371 (384)
T ss_dssp             -------GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTT
T ss_pred             -------hhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hcc
Confidence                   1334567788888777532  26778888888888888763 33 57778888888888888876543  777


Q ss_pred             CCCCCEEECcCC
Q 047929          717 LSFLNHLNLSDN  728 (790)
Q Consensus       717 l~~L~~L~l~~n  728 (790)
                      +++|+.|+|++|
T Consensus       372 l~~L~~L~L~~N  383 (384)
T d2omza2         372 LTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCSEEECCCE
T ss_pred             CCCCCEeeCCCC
Confidence            888888888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=3.3e-23  Score=219.21  Aligned_cols=355  Identities=23%  Similarity=0.280  Sum_probs=177.2

Q ss_pred             cCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCccc
Q 047929           54 LERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYE  133 (790)
Q Consensus        54 L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~  133 (790)
                      +....+++.+.  ...+.+|++|+++++.++.  + +.+..+++|++|++++|++++ +| .++++++|++|++++|++.
T Consensus        29 l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~--l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          29 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             hCCCCCCCccC--HHHhCCCCEEECCCCCCCC--c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccc
Confidence            33444444332  2355677777777777763  3 346677777777777777776 33 2777777777777777654


Q ss_pred             ccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCc
Q 047929          134 LRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSI  213 (790)
Q Consensus       134 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~l  213 (790)
                      .    +..++++++|+.|++.++......    .......+.......+.+......................      .
T Consensus       102 ~----i~~l~~l~~L~~L~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~  167 (384)
T d2omza2         102 D----ITPLANLTNLTGLTLFNNQITDID----PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT------D  167 (384)
T ss_dssp             C----CGGGTTCTTCCEEECCSSCCCCCG----GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC------C
T ss_pred             c----cccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccc------h
Confidence            2    223556666666666666555543    2233445555555554443332222211111111111111      1


Q ss_pred             chhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCC
Q 047929          214 PSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL  293 (790)
Q Consensus       214 p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l  293 (790)
                      ...+.............+...  ....+..+++++.+++++|.+.+..+  +...++|++|++++|.++           
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-----------  232 (384)
T d2omza2         168 LKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------  232 (384)
T ss_dssp             CGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------
T ss_pred             hhhhccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-----------
Confidence            111222233333333333222  12234444555555555554443322  223344444444444433           


Q ss_pred             CCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCC
Q 047929          294 TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSL  373 (790)
Q Consensus       294 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L  373 (790)
                                    ...       .+..+++|+.+++++|.+++..  .+..+++|++|+++++++.+..  .+..++.+
T Consensus       233 --------------~~~-------~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l  287 (384)
T d2omza2         233 --------------DIG-------TLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTAL  287 (384)
T ss_dssp             --------------CCG-------GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTC
T ss_pred             --------------Ccc-------hhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccc
Confidence                          211       1223444555555555544322  2455666777777766665332  25566677


Q ss_pred             CEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccC
Q 047929          374 TYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISN  453 (790)
Q Consensus       374 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  453 (790)
                      +.+++.+|.+.+..   .                                                +..+++++.|++++
T Consensus       288 ~~l~~~~n~l~~~~---~------------------------------------------------~~~~~~l~~L~ls~  316 (384)
T d2omza2         288 TNLELNENQLEDIS---P------------------------------------------------ISNLKNLTYLTLYF  316 (384)
T ss_dssp             SEEECCSSCCSCCG---G------------------------------------------------GGGCTTCSEEECCS
T ss_pred             cccccccccccccc---c------------------------------------------------cchhcccCeEECCC
Confidence            77777666654321   1                                                22334445555555


Q ss_pred             CccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcE
Q 047929          454 TRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVA  533 (790)
Q Consensus       454 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  533 (790)
                      |.+.++.               .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++..|  +.++++|+.
T Consensus       317 n~l~~l~---------------~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~  377 (384)
T d2omza2         317 NNISDIS---------------PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQ  377 (384)
T ss_dssp             SCCSCCG---------------GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSE
T ss_pred             CCCCCCc---------------ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence            5544321               12344566666666666553 22 35556666666666666665432  566666666


Q ss_pred             EECcCC
Q 047929          534 LDMGEN  539 (790)
Q Consensus       534 L~l~~n  539 (790)
                      |+|++|
T Consensus       378 L~L~~N  383 (384)
T d2omza2         378 LGLNDQ  383 (384)
T ss_dssp             EECCCE
T ss_pred             eeCCCC
Confidence            666665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=2.8e-21  Score=196.65  Aligned_cols=245  Identities=24%  Similarity=0.292  Sum_probs=167.6

Q ss_pred             cccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCc-cccCCCCCCEEeCCCCcccccCC
Q 047929           35 CEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPE-YIGSMDNLRYLNLSGAGFAGWIP  113 (790)
Q Consensus        35 ~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~-~~~~l~~L~~L~Ls~~~~~~~lp  113 (790)
                      |.|.++.|.+            .+++ .+|..+.  +.+++|+|++|+++  .+|+ .|.++++|++|++++|.+....|
T Consensus        10 c~~~~~~C~~------------~~L~-~lP~~l~--~~l~~L~Ls~N~i~--~l~~~~f~~l~~L~~L~l~~n~~~~i~~   72 (305)
T d1xkua_          10 CHLRVVQCSD------------LGLE-KVPKDLP--PDTALLDLQNNKIT--EIKDGDFKNLKNLHTLILINNKISKISP   72 (305)
T ss_dssp             EETTEEECTT------------SCCC-SCCCSCC--TTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSSCCCCBCT
T ss_pred             ecCCEEEecC------------CCCC-ccCCCCC--CCCCEEECcCCcCC--CcChhHhhccccccccccccccccccch
Confidence            6777777752            3444 5566553  68999999999998  4554 68899999999999999998778


Q ss_pred             CCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccc--cccCccc
Q 047929          114 HQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL--HHFAPLA  191 (790)
Q Consensus       114 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~  191 (790)
                      .+|.++++|++|++++|++...+..     ....++.|+...+.+......  .+.....++.+....+..  .......
T Consensus        73 ~~f~~l~~L~~L~l~~n~l~~l~~~-----~~~~l~~L~~~~n~l~~l~~~--~~~~~~~~~~l~~~~n~~~~~~~~~~~  145 (305)
T d1xkua_          73 GAFAPLVKLERLYLSKNQLKELPEK-----MPKTLQELRVHENEITKVRKS--VFNGLNQMIVVELGTNPLKSSGIENGA  145 (305)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBCCSS-----CCTTCCEEECCSSCCCBBCHH--HHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred             hhhhCCCccCEecccCCccCcCccc-----hhhhhhhhhccccchhhhhhh--hhhccccccccccccccccccCCCccc
Confidence            8899999999999999987654432     235667777777766655321  455666667777666543  2333455


Q ss_pred             CcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCC
Q 047929          192 SANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDL  271 (790)
Q Consensus       192 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  271 (790)
                      +..+++|++++++++.+.  .+|..+  +++|++|++++|......+..|.+++.+++|++++|.+.+..+.++..+++|
T Consensus       146 ~~~l~~L~~l~l~~n~l~--~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L  221 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNIT--TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  221 (305)
T ss_dssp             GGGCTTCCEEECCSSCCC--SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             cccccccCccccccCCcc--ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccc
Confidence            666777777777777663  344432  4667777777777666666667777777777777777766666666677777


Q ss_pred             CEEEccCcccccccCcccccCCCCCCEEEccCCCCCCC
Q 047929          272 EYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQD  309 (790)
Q Consensus       272 ~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~  309 (790)
                      ++|++++|+++ .+|.. +..+++|+.|++++|+++..
T Consensus       222 ~~L~L~~N~L~-~lp~~-l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         222 RELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             CEEECCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCC
T ss_pred             eeeeccccccc-ccccc-cccccCCCEEECCCCccCcc
Confidence            77777777665 44443 66666666666666666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.3e-22  Score=200.18  Aligned_cols=235  Identities=20%  Similarity=0.201  Sum_probs=184.6

Q ss_pred             CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929          481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN  560 (790)
Q Consensus       481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  560 (790)
                      +++++|++++|++++..+..|..+++|++|++++|++..+.+..+..++.+..+....+.....++...+..+++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            46788889988888766677888889999999999888888888888888888877654433455555455788899999


Q ss_pred             cCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhh
Q 047929          561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVE  640 (790)
Q Consensus       561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  640 (790)
                      +++|.+....+..+..+++|+.+++++|.+++..+..+..++                                      
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~--------------------------------------  153 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG--------------------------------------  153 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--------------------------------------
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhcccc--------------------------------------
Confidence            999988777777788888999999999988855555544433                                      


Q ss_pred             hhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCC
Q 047929          641 YNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL  720 (790)
Q Consensus       641 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  720 (790)
                            .++.|++++|.+.+..+..|.++++|+.+++++|.+++..|..|.++++|++|++++|.+.+..|..|+.+++|
T Consensus       154 ------~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L  227 (284)
T d1ozna_         154 ------NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (284)
T ss_dssp             ------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             ------chhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccccc
Confidence                  34689999999987777888999999999999999998889999999999999999999998888899999999


Q ss_pred             CEEECcCCcccccCCCCCcCCccCCccccCC-cccCCCCC
Q 047929          721 NHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAPLS  759 (790)
Q Consensus       721 ~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~~~  759 (790)
                      ++|++++|++....+.......++......+ ..|..|.+
T Consensus       228 ~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         228 QYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             CEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred             CEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchH
Confidence            9999999999876553322333444444444 44544443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=1.2e-20  Score=191.83  Aligned_cols=233  Identities=20%  Similarity=0.308  Sum_probs=163.5

Q ss_pred             ccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCccc
Q 047929          439 WLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLS  518 (790)
Q Consensus       439 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  518 (790)
                      .|.++++|++|++++|.+..+.+             ..+..+++|+.|++++|+++. +|..+  ...++.|.+.+|.+.
T Consensus        50 ~f~~l~~L~~L~l~~n~~~~i~~-------------~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~  113 (305)
T d1xkua_          50 DFKNLKNLHTLILINNKISKISP-------------GAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEIT  113 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCT-------------TTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCC
T ss_pred             Hhhccccccccccccccccccch-------------hhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhccccchh
Confidence            45566677777777777654322             344566777777777777773 44332  356777777777777


Q ss_pred             ccCCccccCCCCCcEEECcCCccccc-CchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcc
Q 047929          519 GIIPVPFENCSQLVALDMGENEFVGN-IPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKC  597 (790)
Q Consensus       519 ~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~  597 (790)
                      .+.+..+.....+..++...|..... .....+..+++|+++++++|++.. ++..  .+++|+.|++++|...+..+..
T Consensus       114 ~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~  190 (305)
T d1xkua_         114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAAS  190 (305)
T ss_dssp             BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGG
T ss_pred             hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhH
Confidence            66666666777777777777643321 112233467788888888888764 3333  3578888888888887666665


Q ss_pred             hhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeC
Q 047929          598 INNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNL  677 (790)
Q Consensus       598 l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  677 (790)
                      +.+++.                                            ++.|++++|.+.+..+..+.++++|++|+|
T Consensus       191 ~~~~~~--------------------------------------------l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L  226 (305)
T d1xkua_         191 LKGLNN--------------------------------------------LAKLGLSFNSISAVDNGSLANTPHLRELHL  226 (305)
T ss_dssp             GTTCTT--------------------------------------------CCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             hhcccc--------------------------------------------ccccccccccccccccccccccccceeeec
Confidence            554443                                            357888888888777778888999999999


Q ss_pred             CCCcCCcCCCccccCCCCCCEEeCcCccCccccCcc------ccCCCCCCEEECcCCccc-ccCC
Q 047929          678 SHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQS------MSSLSFLNHLNLSDNKLV-GKIP  735 (790)
Q Consensus       678 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~------l~~l~~L~~L~l~~n~l~-~~~p  735 (790)
                      ++|.++ .+|.+|..+++|++|++++|+++...+..      +..+.+|+.|++++|++. ..+|
T Consensus       227 ~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         227 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             CSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             cccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCC
Confidence            999987 56888999999999999999988543333      345678999999999985 3443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3e-20  Score=184.26  Aligned_cols=201  Identities=19%  Similarity=0.278  Sum_probs=155.5

Q ss_pred             CCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEE
Q 047929          480 WPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRIL  559 (790)
Q Consensus       480 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  559 (790)
                      ...+.+++.+++.++ .+|..+.  +++++|+|++|+++.+.+..|..+++|++|++++|.++ .++..  ..+++|++|
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L   82 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTL   82 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--ccccccccc
Confidence            345566677777777 4565443  57788888888887777677778888888888888776 44432  357888888


Q ss_pred             EcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchh
Q 047929          560 NLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMV  639 (790)
Q Consensus       560 ~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  639 (790)
                      ++++|+++. .+..+..+++|+.|++++|.+.+..+..+..+                                      
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--------------------------------------  123 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------------------------------------  123 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC--------------------------------------
T ss_pred             ccccccccc-cccccccccccccccccccccceeeccccccc--------------------------------------
Confidence            888888874 45567788889999998888775444433333                                      


Q ss_pred             hhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCC
Q 047929          640 EYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSF  719 (790)
Q Consensus       640 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~  719 (790)
                            ..++.|++++|.+....+..+..+++|+.|++++|++++..++.|..+++|++|+|++|+++ .+|+++..+++
T Consensus       124 ------~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~  196 (266)
T d1p9ag_         124 ------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL  196 (266)
T ss_dssp             ------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred             ------cccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCC
Confidence                  33467888999888666777788999999999999999888888999999999999999998 78888888999


Q ss_pred             CCEEECcCCcccc
Q 047929          720 LNHLNLSDNKLVG  732 (790)
Q Consensus       720 L~~L~l~~n~l~~  732 (790)
                      |+.|++++||+..
T Consensus       197 L~~L~L~~Np~~C  209 (266)
T d1p9ag_         197 LPFAFLHGNPWLC  209 (266)
T ss_dssp             CSEEECCSCCBCC
T ss_pred             CCEEEecCCCCCC
Confidence            9999999998764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.9e-20  Score=186.67  Aligned_cols=221  Identities=22%  Similarity=0.194  Sum_probs=143.3

Q ss_pred             EcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCc-
Q 047929           53 NLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY-  131 (790)
Q Consensus        53 ~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~-  131 (790)
                      +.++.+++ .+|..+.  +.+++|+|++|+++.. -+.+|.++++|++|+++++++....+..+..+..+++++...+. 
T Consensus        17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCC-CHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            45555665 5555443  5678888888888743 23568888888888888888888777777778888888765432 


Q ss_pred             ccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCC
Q 047929          132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKT  211 (790)
Q Consensus       132 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~  211 (790)
                      +....  .                          ..+.++++|++|++++|.+..+....+....+|+.+++++|.++. 
T Consensus        93 ~~~l~--~--------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~-  143 (284)
T d1ozna_          93 LRSVD--P--------------------------ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-  143 (284)
T ss_dssp             CCCCC--T--------------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred             ccccc--c--------------------------hhhcccccCCEEecCCcccccccccccchhcccchhhhccccccc-
Confidence            11110  0                          145566666666666666666666666666667777777766643 


Q ss_pred             CcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCccccc
Q 047929          212 SIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLE  291 (790)
Q Consensus       212 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~  291 (790)
                      ..+..+..+++|+.|++++|.+....+.+|..+++|+++++++|.+.+..|..|..+++|++|++++|.+.+ ++...+.
T Consensus       144 i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~-~~~~~~~  222 (284)
T d1ozna_         144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALA  222 (284)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHT
T ss_pred             cChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccc-ccccccc
Confidence            223345556667777777776666556666667777777777777666666667777777777777776663 3333366


Q ss_pred             CCCCCCEEEccCCCCC
Q 047929          292 NLTFIKTLDLSFNELG  307 (790)
Q Consensus       292 ~l~~L~~L~l~~~~~~  307 (790)
                      .+++|+.|++++|.+.
T Consensus       223 ~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         223 PLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TCTTCCEEECCSSCEE
T ss_pred             cccccCEEEecCCCCC
Confidence            6666777777666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-18  Score=172.00  Aligned_cols=194  Identities=26%  Similarity=0.233  Sum_probs=108.7

Q ss_pred             EEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCC
Q 047929           51 ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGS  130 (790)
Q Consensus        51 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~  130 (790)
                      +++-++++++ .+|+.+.  +++++|+|++|.+.+. -+..|.++++|++|+|++|+++. +| .++.+++|++|++++|
T Consensus        14 ~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          14 EVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSS
T ss_pred             EEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCc-CHHHhhccccccccccccccccc-cc-cccccccccccccccc
Confidence            3466666666 4555443  4677777777777643 23556777777777777777765 33 2456677777777766


Q ss_pred             cccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCC
Q 047929          131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGK  210 (790)
Q Consensus       131 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~  210 (790)
                      ++.....                             .+..+++|+.|+++++.+..+....+..+.++++|++++|.+..
T Consensus        88 ~l~~~~~-----------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~  138 (266)
T d1p9ag_          88 QLQSLPL-----------------------------LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT  138 (266)
T ss_dssp             CCSSCCC-----------------------------CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             ccccccc-----------------------------ccccccccccccccccccceeeccccccccccccccccccccce
Confidence            5432211                             34455556666666666555555555556666666666665533


Q ss_pred             CCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCccc
Q 047929          211 TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRL  281 (790)
Q Consensus       211 ~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l  281 (790)
                       ..+..+..+++++.+++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.|+|++|++
T Consensus       139 -l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         139 -LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             -CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             -eccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence             11223334555555555555555544455555555555555555555 2343444455555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=2.3e-15  Score=156.01  Aligned_cols=51  Identities=20%  Similarity=0.262  Sum_probs=29.7

Q ss_pred             CCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCc
Q 047929           72 HLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY  131 (790)
Q Consensus        72 ~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~  131 (790)
                      ++++|+|+++.++  ++|+.   .++|++|++++|+++. +|..+   .+|++|++++|.
T Consensus        39 ~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~~-lp~~~---~~L~~L~l~~n~   89 (353)
T d1jl5a_          39 QAHELELNNLGLS--SLPEL---PPHLESLVASCNSLTE-LPELP---QSLKSLLVDNNN   89 (353)
T ss_dssp             TCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCSS-CCCCC---TTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCC--CCCCC---CCCCCEEECCCCCCcc-cccch---hhhhhhhhhhcc
Confidence            4666666666665  35542   3566666666666664 55433   355666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.72  E-value=5.4e-15  Score=153.22  Aligned_cols=77  Identities=29%  Similarity=0.384  Sum_probs=41.6

Q ss_pred             CCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEcc
Q 047929          507 LRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVA  586 (790)
Q Consensus       507 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls  586 (790)
                      ....++..+.+...    ...+++|++|++++|++. .+|.    .+++|+.|++++|+++. +|.   .+++|++|+++
T Consensus       266 ~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~L~  332 (353)
T d1jl5a_         266 LYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVE  332 (353)
T ss_dssp             CCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred             hcccccccCccccc----cccCCCCCEEECCCCccC-cccc----ccCCCCEEECCCCcCCc-ccc---ccCCCCEEECc
Confidence            34445555544432    223456666666666655 4443    24566666666666653 332   23466677777


Q ss_pred             CCcccccCCcc
Q 047929          587 YNRLSGSVPKC  597 (790)
Q Consensus       587 ~n~l~~~~p~~  597 (790)
                      +|+++ .+|..
T Consensus       333 ~N~L~-~lp~~  342 (353)
T d1jl5a_         333 YNPLR-EFPDI  342 (353)
T ss_dssp             SSCCS-SCCCC
T ss_pred             CCcCC-CCCcc
Confidence            77665 44443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.2e-16  Score=150.88  Aligned_cols=203  Identities=23%  Similarity=0.322  Sum_probs=112.1

Q ss_pred             EEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCC
Q 047929           51 ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGS  130 (790)
Q Consensus        51 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~  130 (790)
                      .+++..+.+++..  .++++.+|+.|++.+|.++.  + +.+..+++|++|++++|.+++..  .+.++++|+++++++|
T Consensus        23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGN   95 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSC
T ss_pred             HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccc
Confidence            3455555555433  44667778888888887773  4 34777888888888888777622  3777788888888776


Q ss_pred             cccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCC
Q 047929          131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGK  210 (790)
Q Consensus       131 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~  210 (790)
                      .+.    .+..+.++++|+.++++.+......                            .+...+.++.+.++++.+..
T Consensus        96 ~~~----~i~~l~~l~~L~~l~l~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~~  143 (227)
T d1h6ua2          96 PLK----NVSAIAGLQSIKTLDLTSTQITDVT----------------------------PLAGLSNLQVLYLDLNQITN  143 (227)
T ss_dssp             CCS----CCGGGTTCTTCCEEECTTSCCCCCG----------------------------GGTTCTTCCEEECCSSCCCC
T ss_pred             ccc----ccccccccccccccccccccccccc----------------------------hhccccchhhhhchhhhhch
Confidence            543    2333445555555555544443332                            23334445555555444422


Q ss_pred             CCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccc
Q 047929          211 TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGL  290 (790)
Q Consensus       211 ~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l  290 (790)
                         ...+..+++|++|++++|.+...  ..++++++|++|++++|++.+.  ..++.+++|++|++++|+++ .++.  +
T Consensus       144 ---~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt-~i~~--l  213 (227)
T d1h6ua2         144 ---ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS-DVSP--L  213 (227)
T ss_dssp             ---CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCC-BCGG--G
T ss_pred             ---hhhhccccccccccccccccccc--hhhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCC-CCcc--c
Confidence               12234445555555555554422  1255555555555555555443  12455556666666665554 2322  4


Q ss_pred             cCCCCCCEEEcc
Q 047929          291 ENLTFIKTLDLS  302 (790)
Q Consensus       291 ~~l~~L~~L~l~  302 (790)
                      .++++|+.|+++
T Consensus       214 ~~l~~L~~L~ls  225 (227)
T d1h6ua2         214 ANTSNLFIVTLT  225 (227)
T ss_dssp             TTCTTCCEEEEE
T ss_pred             ccCCCCCEEEee
Confidence            555666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.9e-19  Score=191.69  Aligned_cols=96  Identities=22%  Similarity=0.313  Sum_probs=54.4

Q ss_pred             hHHhhCCCCCCCEEEccCccccccC----cccCcCCCCCCEEECCCCCCCCCCc---chhcc-CCCCCcEEEccCCcCCC
Q 047929          164 WLLVINSLPSLKVLKLFSCKLHHFA----PLASANFSSLNALDLSGNLFGKTSI---PSWVF-GLSDLVFLDLSSNIFRG  235 (790)
Q Consensus       164 ~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~~~l~~~~l---p~~l~-~l~~L~~L~l~~~~~~~  235 (790)
                      +...+..++++++|+|.+|.++...    ..++..+++|++|++++|.+++..+   ...+. ...+|++|++++|.++.
T Consensus        19 ~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          19 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccc
Confidence            3345556667777777777665432    2344566777777777776532111   11111 12357777777776653


Q ss_pred             C----CCccCCCCCCCcEEeCCCCcCCc
Q 047929          236 P----IPDGFKNLTSLRYLDLSYNQFNS  259 (790)
Q Consensus       236 ~----~p~~~~~l~~L~~L~l~~~~~~~  259 (790)
                      .    ++..+..+++|++|++++|.+..
T Consensus        99 ~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          99 AGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             GGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cccccccchhhccccccccccccccchh
Confidence            2    33445666777777777776653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1e-15  Score=147.22  Aligned_cols=207  Identities=22%  Similarity=0.267  Sum_probs=156.2

Q ss_pred             CCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEE
Q 047929           72 HLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHL  151 (790)
Q Consensus        72 ~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L  151 (790)
                      ++..++++.+++.+.   ..+..+.+|++|++++|+++. + +.++++++|++|++++|.+....               
T Consensus        20 ~~~~~~l~~~~~~d~---~~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~---------------   79 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA---------------   79 (227)
T ss_dssp             HHHHHHTTCSSTTSE---ECHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG---------------
T ss_pred             HHHHHHhCCCCcCCc---CCHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc---------------
Confidence            334456777776643   234567888999999998886 5 45888889999988888643221               


Q ss_pred             ECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCC
Q 047929          152 DTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN  231 (790)
Q Consensus       152 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~  231 (790)
                                     .+..+++++.+++++|.++.+  ..+.++++|++++++++...+   ...+...+.++.+.++++
T Consensus        80 ---------------~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~---~~~~~~~~~~~~l~~~~~  139 (227)
T d1h6ua2          80 ---------------PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLN  139 (227)
T ss_dssp             ---------------GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC---CGGGTTCTTCCEEECCSS
T ss_pred             ---------------ccccccccccccccccccccc--ccccccccccccccccccccc---cchhccccchhhhhchhh
Confidence                           355666777777777766654  246788899999998887643   333667889999999999


Q ss_pred             cCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcc
Q 047929          232 IFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS  311 (790)
Q Consensus       232 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  311 (790)
                      .+...  ..+..+++|++|++++|.+...  ..++++++|+.|++++|+++ .++.  +..+++|++|++++|+++... 
T Consensus       140 ~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~-~l~~--l~~l~~L~~L~Ls~N~lt~i~-  211 (227)
T d1h6ua2         140 QITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVS-  211 (227)
T ss_dssp             CCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCG-
T ss_pred             hhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccC-CChh--hcCCCCCCEEECcCCcCCCCc-
Confidence            88743  3478889999999999998754  34889999999999999987 4443  789999999999999987643 


Q ss_pred             hhhhhhhccccCCCCEEEccC
Q 047929          312 EILDIISACAAFELESLFLRG  332 (790)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~  332 (790)
                            .+..+++|+.|++++
T Consensus       212 ------~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         212 ------PLANTSNLFIVTLTN  226 (227)
T ss_dssp             ------GGTTCTTCCEEEEEE
T ss_pred             ------ccccCCCCCEEEeeC
Confidence                  346788999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.8e-16  Score=149.67  Aligned_cols=86  Identities=19%  Similarity=0.238  Sum_probs=37.6

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCC-CcccccCCccccCCCCCcEEE
Q 047929          506 SLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS-NKLHGIFPIQICHLSSLQILD  584 (790)
Q Consensus       506 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~  584 (790)
                      ++++|++++|+++.+.+..|.++++|++|++++|.+...++...+..++.++++.+.. |++....+..|..+++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            3444444444444333334444444444444444443333332223344444444432 334334444445555555555


Q ss_pred             ccCCccc
Q 047929          585 VAYNRLS  591 (790)
Q Consensus       585 ls~n~l~  591 (790)
                      +++|.+.
T Consensus       110 l~~~~l~  116 (242)
T d1xwdc1         110 ISNTGIK  116 (242)
T ss_dssp             EESCCCC
T ss_pred             cchhhhc
Confidence            5555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-18  Score=187.17  Aligned_cols=397  Identities=17%  Similarity=0.111  Sum_probs=209.7

Q ss_pred             CCCEEEccCccccccC-cccCcCCCCCCEEECCCCCCCCC---CcchhccCCCCCcEEEccCCcCCCC----CCccCC-C
Q 047929          173 SLKVLKLFSCKLHHFA-PLASANFSSLNALDLSGNLFGKT---SIPSWVFGLSDLVFLDLSSNIFRGP----IPDGFK-N  243 (790)
Q Consensus       173 ~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~L~~~~l~~~---~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~-~  243 (790)
                      +|++|+++++++++.. ...+..++++++|+|++|.+++.   .+...+..+++|++|++++|.+...    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5677777777776643 23345567777777777776431   2234455677777777777766421    122222 2


Q ss_pred             CCCCcEEeCCCCcCCcc----ccccccCCCCCCEEEccCcccccccCcc----cccCCCCCCEEEccCCCCCCCcchhhh
Q 047929          244 LTSLRYLDLSYNQFNST----ISDCFSNFDDLEYLSLGYNRLQGTISSI----GLENLTFIKTLDLSFNELGQDISEILD  315 (790)
Q Consensus       244 l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~  315 (790)
                      .++|++|++++|.+++.    ++..+..+++|++|++++|.+.......    ......................... .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~  161 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP-L  161 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH-H
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc-c
Confidence            34677777777776543    2344566677777777777664221111    0111122333333333222111100 0


Q ss_pred             hhhccccCCCCEEEccCCcccccc----chhh-ccCCCCcEEEccCcccCCCC----CcCcCCCCCCCEEECcCCcCCCc
Q 047929          316 IISACAAFELESLFLRGCKISGQL----TNQL-GLFKNLHTLALSDNSVSGPL----PPASGELSSLTYLDLSNNNLNGM  386 (790)
Q Consensus       316 ~~~~~~~~~L~~L~l~~~~~~~~~----~~~l-~~l~~L~~L~L~~~~i~~~~----~~~~~~l~~L~~L~l~~n~~~~~  386 (790)
                      ...+.....++.+.++++......    ...+ ........+++..+.+....    ...+...+.++.+++.+|.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            112233455666666665443211    0111 11123445555554433110    01122345555555555543211


Q ss_pred             CChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCC----CCcccccCCCCCEEEccCCccCCCccc
Q 047929          387 ISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPH----FPSWLHSQKHLSKLDISNTRISDIIPR  462 (790)
Q Consensus       387 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~  462 (790)
                      ...                    ............++.+++++|.+...    ....+...+.++.+++++|.+.+....
T Consensus       242 ~~~--------------------~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~  301 (460)
T d1z7xw1         242 GMA--------------------ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  301 (460)
T ss_dssp             HHH--------------------HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             ccc--------------------hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            000                    00111122345566777777765532    223345678888899988887543222


Q ss_pred             ccccccccccCCCccCCCCCCcEEEccCCcccccCCc----CCCCCCCCCEEEccCCcccccCC----ccc-cCCCCCcE
Q 047929          463 WFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPI----SMGTLTSLRSLNLRSNRLSGIIP----VPF-ENCSQLVA  533 (790)
Q Consensus       463 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~L~~n~i~~~~~----~~l-~~l~~L~~  533 (790)
                      .+..     .   .......|+.+++++|.++.....    .+...++|++|+|++|+++....    ..+ ...+.|++
T Consensus       302 ~l~~-----~---l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~  373 (460)
T d1z7xw1         302 LLCE-----T---LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV  373 (460)
T ss_dssp             HHHH-----H---HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             hhhc-----c---ccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCE
Confidence            1110     0   012335788999998887643222    23345689999999998865322    222 34577999


Q ss_pred             EECcCCcccccCchhh---hhcCCCCcEEEcCCCcccccCCc----ccc-CCCCCcEEEccCCcccccCCcch
Q 047929          534 LDMGENEFVGNIPTWM---GERFSRLRILNLRSNKLHGIFPI----QIC-HLSSLQILDVAYNRLSGSVPKCI  598 (790)
Q Consensus       534 L~l~~n~~~~~~~~~~---~~~~~~L~~L~L~~n~~~~~~~~----~~~-~l~~L~~L~ls~n~l~~~~p~~l  598 (790)
                      |++++|.+++.....+   ....++|++|++++|+++.....    .+. +.+.|+.|++.+|.+.+..+..+
T Consensus       374 L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             EECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            9999998875322222   23568899999999988643222    222 34579999999998875444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.7e-15  Score=146.17  Aligned_cols=221  Identities=13%  Similarity=0.069  Sum_probs=151.0

Q ss_pred             CCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccc-cCCcc
Q 047929          446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG-IIPVP  524 (790)
Q Consensus       446 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~  524 (790)
                      .+.++.++..++.+              |+.+  .+++++|++++|+++...+..|.++++|++|++++|.+.. +.+..
T Consensus        10 ~~~i~c~~~~l~~i--------------P~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~   73 (242)
T d1xwdc1          10 NRVFLCQESKVTEI--------------PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV   73 (242)
T ss_dssp             SSEEEEESCSCSSC--------------CSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSS
T ss_pred             CCEEEEeCCCCCCc--------------CCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccc
Confidence            46788888777654              3222  2589999999999997666679999999999999999875 44567


Q ss_pred             ccCCCCCcEEECcC-CcccccCchhhhhcCCCCcEEEcCCCcccccCCcc-ccCCCCCcEEEccCCcccccCCcchhccc
Q 047929          525 FENCSQLVALDMGE-NEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQ-ICHLSSLQILDVAYNRLSGSVPKCINNFT  602 (790)
Q Consensus       525 l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~ls~n~l~~~~p~~l~~l~  602 (790)
                      |..++.++++.+.. |.+.. .+...+..+++|+.+++++|.+....+.. +..+..+..+..+++.+....+..+.++ 
T Consensus        74 f~~l~~l~~l~~~~~n~l~~-~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~-  151 (242)
T d1xwdc1          74 FSNLPKLHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL-  151 (242)
T ss_dssp             EESCTTCCEEEEECCTTCCE-ECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS-
T ss_pred             cccccccccccccccccccc-cccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccc-
Confidence            89999999999876 45553 44444458999999999999987543322 2334555555555555553333332222 


Q ss_pred             cccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEE-eCCCCc
Q 047929          603 AMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSL-NLSHNS  681 (790)
Q Consensus       603 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~n~  681 (790)
                                                                ...++.+++++|+++. ++.......+++++ .+++|.
T Consensus       152 ------------------------------------------~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         152 ------------------------------------------SFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             ------------------------------------------BSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTT
T ss_pred             ------------------------------------------cccceeeecccccccc-cccccccchhhhccccccccc
Confidence                                                      1234678888888874 44444445555555 456777


Q ss_pred             CCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929          682 FIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD  727 (790)
Q Consensus       682 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  727 (790)
                      ++...+..|.++++|++|++++|+++...+..|..++.|+.+++.+
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            7755555688888899999988888865555666666666555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.8e-15  Score=139.65  Aligned_cols=163  Identities=27%  Similarity=0.388  Sum_probs=84.5

Q ss_pred             cCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCC
Q 047929           68 VDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSL  147 (790)
Q Consensus        68 ~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~  147 (790)
                      .++.++++|+++++.+..  + +.+..+++|++|++++|++++ ++ .++++++|++|++++|.+...    .       
T Consensus        37 ~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~-~~-~l~~l~~L~~L~l~~n~~~~~----~-------  100 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADI----T-------  100 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC----G-------
T ss_pred             HHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccC-cc-cccCCcccccccccccccccc----c-------
Confidence            345666677777666663  2 235666677777777766665 22 266666666666666543211    1       


Q ss_pred             CcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEE
Q 047929          148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD  227 (790)
Q Consensus       148 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~  227 (790)
                                         .+.+++.|+.|+++++.....  ..+..+++|+.|++++|.+..  ++ .+..+++|++|+
T Consensus       101 -------------------~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~--~~-~l~~~~~L~~L~  156 (199)
T d2omxa2         101 -------------------PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD--IS-ALSGLTSLQQLN  156 (199)
T ss_dssp             -------------------GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC--CG-GGTTCTTCSEEE
T ss_pred             -------------------ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc--cc-cccccccccccc
Confidence                               233444444444444443332  124445555555555555422  22 344555555555


Q ss_pred             ccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEE
Q 047929          228 LSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYL  274 (790)
Q Consensus       228 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  274 (790)
                      +.+|++.+. + .++++++|++|++++|++++.  ..++++++|++|
T Consensus       157 l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         157 FSSNQVTDL-K-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             cccccccCC-c-cccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            555555532 2 255555566666655555442  234455555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=3.8e-15  Score=140.90  Aligned_cols=165  Identities=25%  Similarity=0.292  Sum_probs=84.7

Q ss_pred             CCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCC
Q 047929           69 DLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLL  148 (790)
Q Consensus        69 ~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L  148 (790)
                      .+..|+.|+++++.+...  + .+..+++|++|++++|++++ ++ .++.+++|++|++++|++..    +.        
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~----l~--------  106 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD----LS--------  106 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC----GG--------
T ss_pred             HhcCccEEECcCCCCCCc--h-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc----cc--------
Confidence            345566666666666532  2 35556666666666666655 32 24556666666666554321    11        


Q ss_pred             cEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEc
Q 047929          149 EHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDL  228 (790)
Q Consensus       149 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l  228 (790)
                                        .+..+++|+.|++.+|.+..+  ..+..+++++.++++++.+.+   +..+..+++|+++++
T Consensus       107 ------------------~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~---~~~~~~l~~L~~l~l  163 (210)
T d1h6ta2         107 ------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSL  163 (210)
T ss_dssp             ------------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEEC
T ss_pred             ------------------ccccccccccccccccccccc--ccccccccccccccccccccc---ccccccccccccccc
Confidence                              233444445555444444332  234455555555555555432   223445555666666


Q ss_pred             cCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEcc
Q 047929          229 SSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLG  277 (790)
Q Consensus       229 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  277 (790)
                      ++|++.+ ++ .+.++++|++|++++|++++. + .+..+++|++|+++
T Consensus       164 ~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         164 EDNQISD-IV-PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CSSCCCC-CG-GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEE
T ss_pred             ccccccc-cc-cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEcc
Confidence            6665553 22 255556666666666655432 2 35555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.2e-14  Score=137.29  Aligned_cols=163  Identities=23%  Similarity=0.294  Sum_probs=110.9

Q ss_pred             CcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEE
Q 047929           47 GHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLD  126 (790)
Q Consensus        47 ~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~  126 (790)
                      ..+++|+++++.+++.  ..+..+++|++|++++|++.+  ++ .++.+++|++|++++|++++ +| .+..+++|++|+
T Consensus        46 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccC--cc-ccccCccccccccccccccc-cc-cccccccccccc
Confidence            3689999999998743  348899999999999999985  44 47899999999999999987 55 589999999999


Q ss_pred             CcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCC
Q 047929          127 LSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGN  206 (790)
Q Consensus       127 ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  206 (790)
                      +++|.+..    +..+.+++.++.++++.+.+....                            .+..+++|+++++++|
T Consensus       119 l~~~~~~~----~~~l~~l~~l~~l~~~~n~l~~~~----------------------------~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         119 LEHNGISD----INGLVHLPQLESLYLGNNKITDIT----------------------------VLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             CTTSCCCC----CGGGGGCTTCCEEECCSSCCCCCG----------------------------GGGGCTTCSEEECCSS
T ss_pred             cccccccc----cccccccccccccccccccccccc----------------------------cccccccccccccccc
Confidence            99886432    233444445555555544443322                            2344556666666666


Q ss_pred             CCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCC
Q 047929          207 LFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLS  253 (790)
Q Consensus       207 ~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  253 (790)
                      .+.+  ++. +..+++|++|++++|.++. ++ .+.++++|++|+++
T Consensus       167 ~l~~--i~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         167 QISD--IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCCC--CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             cccc--ccc-ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            5532  332 5556666666666666653 33 36666666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=3.8e-15  Score=138.76  Aligned_cols=128  Identities=21%  Similarity=0.272  Sum_probs=64.9

Q ss_pred             cEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccc-cCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCc
Q 047929          532 VALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHG-IFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSH  610 (790)
Q Consensus       532 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~  610 (790)
                      +.++.+++.++ .+|..+   .+++++|+|++|++++ ..+..|..+++|+.|++++|.+....+..+..++.       
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~-------   79 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-------   79 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT-------
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccc-------
Confidence            35566666555 455433   2456666666666653 22334455556666666655555444433333222       


Q ss_pred             cccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccc
Q 047929          611 HQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETI  690 (790)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  690 (790)
                                                           |++|+|++|++....|..|.++++|++|+|++|.++...|++|
T Consensus        80 -------------------------------------L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f  122 (192)
T d1w8aa_          80 -------------------------------------IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             -------------------------------------CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred             -------------------------------------cceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHh
Confidence                                                 2345555555554444445555555555555555554444455


Q ss_pred             cCCCCCCEEeCcCccCc
Q 047929          691 GNMRSIESLDLSGNQIS  707 (790)
Q Consensus       691 ~~l~~L~~L~l~~n~l~  707 (790)
                      ..+++|++|++++|.+.
T Consensus       123 ~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         123 EHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCTTCCEEECTTCCBC
T ss_pred             cCCcccccccccccccc
Confidence            55555555555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=4.7e-14  Score=132.04  Aligned_cols=160  Identities=27%  Similarity=0.323  Sum_probs=110.7

Q ss_pred             CcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEE
Q 047929           47 GHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLD  126 (790)
Q Consensus        47 ~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~  126 (790)
                      .++++|++++++++. + +.+..+++|++|++++|++++.  +. ++++++|++|++++|.+.. ++ .++.+++|++|+
T Consensus        40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc--cc-ccCCccccccccccccccc-cc-cccccccccccc
Confidence            578999999999874 3 4588999999999999999854  43 8999999999999999876 44 489999999999


Q ss_pred             CcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCC
Q 047929          127 LSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGN  206 (790)
Q Consensus       127 ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  206 (790)
                      ++++.....    ..+                          ..+++|+.|++++|.+..+  ..+..+++|+.|++.+|
T Consensus       113 l~~~~~~~~----~~~--------------------------~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n  160 (199)
T d2omxa2         113 LFNNQITDI----DPL--------------------------KNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSN  160 (199)
T ss_dssp             CCSSCCCCC----GGG--------------------------TTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSS
T ss_pred             ccccccccc----ccc--------------------------chhhhhHHhhhhhhhhccc--ccccccccccccccccc
Confidence            998864322    223                          3445555555555554433  23555666666666666


Q ss_pred             CCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEE
Q 047929          207 LFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYL  250 (790)
Q Consensus       207 ~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  250 (790)
                      .+++  ++ .+.++++|++|++++|++++ ++ .++++++|++|
T Consensus       161 ~l~~--l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         161 QVTD--LK-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCCC--CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccC--Cc-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            6533  33 25566666666666666653 33 35666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=4.4e-15  Score=138.29  Aligned_cols=154  Identities=21%  Similarity=0.276  Sum_probs=92.1

Q ss_pred             cEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCC-cchhccccccccCCccccceeecccccccceeeeeeeeec
Q 047929          557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP-KCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMK  635 (790)
Q Consensus       557 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  635 (790)
                      +.++.++++++ .+|..+  .+++++|+|++|++++.++ ..|.++++                                
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~--------------------------------   55 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPH--------------------------------   55 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTT--------------------------------
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCce--------------------------------
Confidence            45666666666 344443  2567777777777764332 23333333                                


Q ss_pred             cchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCcccc
Q 047929          636 GFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS  715 (790)
Q Consensus       636 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~  715 (790)
                                  |++|+|++|.+....+..+..+++|++|++++|+++...|++|.++++|++|+|++|++++..|..|.
T Consensus        56 ------------L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~  123 (192)
T d1w8aa_          56 ------------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE  123 (192)
T ss_dssp             ------------CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred             ------------EeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhc
Confidence                        34677777777666666666677777777777777766666677777777777777777766666677


Q ss_pred             CCCCCCEEECcCCcccccCCCCCcCCccCCccccCC-cccCCC
Q 047929          716 SLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAP  757 (790)
Q Consensus       716 ~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~  757 (790)
                      .+++|++|++++|++....+.......++...+.+| .-|+.|
T Consensus       124 ~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_         124 HLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            777777777777766544332222222344444444 334444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.1e-16  Score=153.50  Aligned_cols=224  Identities=21%  Similarity=0.152  Sum_probs=116.5

Q ss_pred             EEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCccccc-CCCCCCCCCCCcEEECcC
Q 047929           51 ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGW-IPHQLGNLSNLMHLDLSG  129 (790)
Q Consensus        51 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~-lp~~l~~l~~L~~L~ls~  129 (790)
                      .+|+++..+.......+.. ..+..+.++.......  ........+|++||+++|.++.. ++..+.++++|++|++++
T Consensus         4 ~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~--~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSC--CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             EEECCCCCCCchHHHHHHh-ccceEeeccccccccc--hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            5677776654332222221 2345666665544422  12233456788888888776543 334457778888888887


Q ss_pred             CcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCcc-ccccC-cccCc-CCCCCCEEECCCC
Q 047929          130 SYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCK-LHHFA-PLASA-NFSSLNALDLSGN  206 (790)
Q Consensus       130 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~l~-~l~~L~~L~L~~~  206 (790)
                      |.+  ....+..++.+++|++|+++++...++..+.....++++|++|++++|. +.... ...+. ..++|+.|+++++
T Consensus        81 ~~l--~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2          81 LRL--SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             CBC--CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cCC--CcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence            753  2333445566667777777765544444444445566777777776653 22211 11122 2356666666654


Q ss_pred             C--CCCCCcchhccCCCCCcEEEccCCc-CCCCCCccCCCCCCCcEEeCCCC-cCCccccccccCCCCCCEEEccCc
Q 047929          207 L--FGKTSIPSWVFGLSDLVFLDLSSNI-FRGPIPDGFKNLTSLRYLDLSYN-QFNSTISDCFSNFDDLEYLSLGYN  279 (790)
Q Consensus       207 ~--l~~~~lp~~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~  279 (790)
                      .  +++..+...+..+++|++|++++|. +++.....+.++++|++|++++| .+++.....++++++|+.|++.++
T Consensus       159 ~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            2  2222233333445566666666543 33333444555555666665554 333333334444455555554443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.9e-15  Score=150.31  Aligned_cols=227  Identities=18%  Similarity=0.155  Sum_probs=149.1

Q ss_pred             EEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcC
Q 047929           50 LELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG  129 (790)
Q Consensus        50 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~  129 (790)
                      ..+.+....+. ...........|++|+++++.+....+...+.++++|++|++++|.+++..+..+.++++|++|++++
T Consensus        26 ~~lrl~~~~~~-~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          26 IAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             SEEECTTCEEC-SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             eEeeccccccc-cchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            34455544433 22223345568888888888776544566677888899999988888776777788888899999888


Q ss_pred             CcccccccCcc-ccCCCCCCcEEECCCCCCCCCchhHHhh-CCCCCCCEEEccCcc--ccccC-cccCcCCCCCCEEECC
Q 047929          130 SYYELRVEDIS-WLAGPSLLEHLDTSDVDLIKASDWLLVI-NSLPSLKVLKLFSCK--LHHFA-PLASANFSSLNALDLS  204 (790)
Q Consensus       130 ~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~--~~~~~-~~~l~~l~~L~~L~L~  204 (790)
                      |.- .....+. ...++++|++|+++++....+..+...+ ..++.|+.|+++++.  +.... .....++++|++|+++
T Consensus       105 c~~-itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~  183 (284)
T d2astb2         105 CSG-FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  183 (284)
T ss_dssp             CBS-CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             ccc-ccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccc
Confidence            641 1112222 2356788999999887655554443333 345789999998763  33322 2233568899999999


Q ss_pred             CCC-CCCCCcchhccCCCCCcEEEccCC-cCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccc
Q 047929          205 GNL-FGKTSIPSWVFGLSDLVFLDLSSN-IFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ  282 (790)
Q Consensus       205 ~~~-l~~~~lp~~l~~l~~L~~L~l~~~-~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  282 (790)
                      ++. +++ .....+.++++|++|++++| .+++.....++++++|++|++.++--.+........+|+|+   +..+.++
T Consensus       184 ~~~~itd-~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls  259 (284)
T d2astb2         184 DSVMLKN-DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFT  259 (284)
T ss_dssp             TCTTCCG-GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSC
T ss_pred             cccCCCc-hhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCC
Confidence            875 444 45666788999999999997 46555555678899999999988832222222234456654   3444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=1.6e-13  Score=140.94  Aligned_cols=96  Identities=20%  Similarity=0.205  Sum_probs=46.8

Q ss_pred             ccCCCCCCEEEccCcccccc----cCcccccCCCCCCEEEccCCCCCCCcchhh-hhhhccccCCCCEEEccCCcccccc
Q 047929          265 FSNFDDLEYLSLGYNRLQGT----ISSIGLENLTFIKTLDLSFNELGQDISEIL-DIISACAAFELESLFLRGCKISGQL  339 (790)
Q Consensus       265 l~~l~~L~~L~l~~~~l~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~  339 (790)
                      +..+++|+.|++++|.+...    +.. .+..+++|++|++++|.+........ +.+.......|++|++++|.+....
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~-~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~  289 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  289 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             hcchhhhcccccccccccccccccccc-cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHH
Confidence            33444555555555544311    111 14455566666666665543322111 1111123355777777777665322


Q ss_pred             ----chhhc-cCCCCcEEEccCcccCC
Q 047929          340 ----TNQLG-LFKNLHTLALSDNSVSG  361 (790)
Q Consensus       340 ----~~~l~-~l~~L~~L~L~~~~i~~  361 (790)
                          ...+. +.++|++|++++|.+..
T Consensus       290 ~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         290 VRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHHHHccCCCCCEEECCCCcCCC
Confidence                22232 45677777777777753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=8.6e-13  Score=111.83  Aligned_cols=104  Identities=23%  Similarity=0.271  Sum_probs=71.2

Q ss_pred             EEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcC
Q 047929           50 LELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG  129 (790)
Q Consensus        50 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~  129 (790)
                      |+|+|++++++ .++ .+..+++|++|++++|+++  ++|+.++.+++|++|++++|.+++ +| .++++++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC--cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCC
Confidence            46788888876 333 4778888888888888887  467777888888888888888876 44 477888888888888


Q ss_pred             CcccccccCccccCCCCCCcEEECCCCCCCC
Q 047929          130 SYYELRVEDISWLAGPSLLEHLDTSDVDLIK  160 (790)
Q Consensus       130 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  160 (790)
                      |++...+. +..+..+++|+.|++++|.+..
T Consensus        75 N~i~~~~~-~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSST-TGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCC-chhhcCCCCCCEEECCCCcCCc
Confidence            77553322 2334455555555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.3e-12  Score=110.75  Aligned_cols=56  Identities=23%  Similarity=0.277  Sum_probs=46.4

Q ss_pred             CEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCccc
Q 047929           74 NLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYE  133 (790)
Q Consensus        74 ~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~  133 (790)
                      |+|+|++|+++  .++ .+..+++|++|++++|.+++ +|..++.+++|++|++++|.+.
T Consensus         1 R~L~Ls~n~l~--~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~   56 (124)
T d1dcea3           1 RVLHLAHKDLT--VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE   56 (124)
T ss_dssp             SEEECTTSCCS--SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCC--CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccc
Confidence            67899999988  344 47888999999999999886 7878888999999999888654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.6e-13  Score=118.26  Aligned_cols=62  Identities=16%  Similarity=0.187  Sum_probs=36.8

Q ss_pred             CcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcc
Q 047929           67 LVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYY  132 (790)
Q Consensus        67 l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~  132 (790)
                      +.++..+|.|+|++|++.  .++..+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+
T Consensus        14 ~~n~~~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i   75 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRI   75 (162)
T ss_dssp             EECTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCC
T ss_pred             ccCcCcCcEEECCCCCCC--ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccc
Confidence            445556666666666666  334545556666666666666665 32 355666666666665543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=4.5e-14  Score=145.17  Aligned_cols=248  Identities=13%  Similarity=0.139  Sum_probs=157.4

Q ss_pred             CcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCccccc----------CCcCCCCCCC
Q 047929          437 PSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGS----------IPISMGTLTS  506 (790)
Q Consensus       437 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----------~~~~~~~l~~  506 (790)
                      ...+.....+++|++++|.+.+....         .+...+...++|+.++++++.....          +...+..+++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~---------~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~   94 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAAR---------WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK   94 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHH---------HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHH---------HHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCC
Confidence            34466678888888888877543221         2223456678888888887654311          1123456788


Q ss_pred             CCEEEccCCcccccCC----ccccCCCCCcEEECcCCcccccCchhh------------hhcCCCCcEEEcCCCccccc-
Q 047929          507 LRSLNLRSNRLSGIIP----VPFENCSQLVALDMGENEFVGNIPTWM------------GERFSRLRILNLRSNKLHGI-  569 (790)
Q Consensus       507 L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~------------~~~~~~L~~L~L~~n~~~~~-  569 (790)
                      |+.|++++|.++....    ..+..+++|+.|++++|.+.......+            ....+.|+.+++++|++... 
T Consensus        95 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~  174 (344)
T d2ca6a1          95 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  174 (344)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             cccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccc
Confidence            8899998888765422    334567888999998887653221111            12457888899888877532 


Q ss_pred             ---CCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhccc
Q 047929          570 ---FPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILN  646 (790)
Q Consensus       570 ---~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (790)
                         +...+...+.|+.|++++|.+...-...  .+                                     .......+
T Consensus       175 ~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~--~l-------------------------------------~~~l~~~~  215 (344)
T d2ca6a1         175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH--LL-------------------------------------LEGLAYCQ  215 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHH--HH-------------------------------------HTTGGGCT
T ss_pred             cccccchhhhhhhhccccccccccccccccc--ch-------------------------------------hhhhcchh
Confidence               2233456778899999888775310000  00                                     01112345


Q ss_pred             ceeEEEccCccCCCC----CCcccccCCCCCEEeCCCCcCCcCCCc----cccC--CCCCCEEeCcCccCccc----cCc
Q 047929          647 LVRSIDISMNNFSGE----IPMEVTNLKGLQSLNLSHNSFIGKIPE----TIGN--MRSIESLDLSGNQISGK----IPQ  712 (790)
Q Consensus       647 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~--l~~L~~L~l~~n~l~~~----~p~  712 (790)
                      .|+.|+|++|.++..    +...+..+++|++|+|++|.+++....    ++..  .++|++|++++|++...    +..
T Consensus       216 ~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~  295 (344)
T d2ca6a1         216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  295 (344)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             hhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHH
Confidence            577899998887532    344567788999999999988754222    2322  36799999999988642    233


Q ss_pred             ccc-CCCCCCEEECcCCcccc
Q 047929          713 SMS-SLSFLNHLNLSDNKLVG  732 (790)
Q Consensus       713 ~l~-~l~~L~~L~l~~n~l~~  732 (790)
                      .+. .+++|++|++++|++..
T Consensus       296 ~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         296 VIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHccCCCCCEEECCCCcCCC
Confidence            343 46789999999998753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.4e-13  Score=118.75  Aligned_cols=112  Identities=18%  Similarity=0.106  Sum_probs=70.5

Q ss_pred             ccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCC
Q 047929           92 IGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSL  171 (790)
Q Consensus        92 ~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l  171 (790)
                      +.+..++|.|+|++|+++. ++..+..+++|++|++++|.+....                              .+..+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l~------------------------------~~~~l   62 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLD------------------------------GFPLL   62 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEEC------------------------------CCCCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCccC------------------------------CcccC
Confidence            5567788889999988887 5665677888888888888654221                              23455


Q ss_pred             CCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCC
Q 047929          172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFR  234 (790)
Q Consensus       172 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~  234 (790)
                      ++|++|++++|.+..+++..+..+++|++|++++|.+........+..+++|++|++++|.+.
T Consensus        63 ~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          63 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccc
Confidence            666666666666666655555566666666666666633111123445555555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.4e-10  Score=102.44  Aligned_cols=104  Identities=15%  Similarity=0.144  Sum_probs=80.8

Q ss_pred             eEEEccCccCCCCCCcccccCCCCCEEeCCCCc-CCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929          649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNS-FIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD  727 (790)
Q Consensus       649 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  727 (790)
                      +.++.+++.+. ..|..+..+++|++|++++|+ ++...+++|.++++|+.|++++|+++...|.+|..+++|++|++++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            35777777776 567777788888888887664 7766667788888888888888888877788888888888888888


Q ss_pred             CcccccCCCCCcCCccCCccccCCcc
Q 047929          728 NKLVGKIPSSTQLQSFGASSITGNDL  753 (790)
Q Consensus       728 n~l~~~~p~~~~~~sl~~l~~~~n~l  753 (790)
                      |++....+......+++.+++.+|++
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCcccChhhhccccccccccCCCcc
Confidence            88885455555566788888888855

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.05  E-value=1e-12  Score=121.95  Aligned_cols=43  Identities=21%  Similarity=0.310  Sum_probs=27.8

Q ss_pred             cCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcc
Q 047929           88 IPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYY  132 (790)
Q Consensus        88 l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~  132 (790)
                      ++..+..+++|++|++++|+++. ++ .+..+++|++|++++|.+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i   82 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI   82 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEE
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccc
Confidence            45566667777777777776665 33 466666777777766654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.9e-10  Score=98.92  Aligned_cols=83  Identities=19%  Similarity=0.196  Sum_probs=66.2

Q ss_pred             eeEEEccCcc-CCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECc
Q 047929          648 VRSIDISMNN-FSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLS  726 (790)
Q Consensus       648 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~  726 (790)
                      +++|++++|+ +....+..|.++++|+.|++++|+++...+.+|..+++|++|+|++|++....+..+..+ +|++|+|+
T Consensus        33 l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~  111 (156)
T d2ifga3          33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLS  111 (156)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECC
T ss_pred             cCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccccC
Confidence            4567776553 664445678889999999999999998888889999999999999999995555555544 79999999


Q ss_pred             CCccc
Q 047929          727 DNKLV  731 (790)
Q Consensus       727 ~n~l~  731 (790)
                      +|++.
T Consensus       112 ~Np~~  116 (156)
T d2ifga3         112 GNPLH  116 (156)
T ss_dssp             SSCCC
T ss_pred             CCccc
Confidence            99885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.03  E-value=8.5e-12  Score=115.57  Aligned_cols=38  Identities=21%  Similarity=0.396  Sum_probs=20.8

Q ss_pred             cCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCccc
Q 047929          552 RFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS  591 (790)
Q Consensus       552 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~  591 (790)
                      .+++|++|++++|+++.. + .+..+++|+.|++++|.++
T Consensus        46 ~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~   83 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             HTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC
T ss_pred             cccccceeECcccCCCCc-c-cccCCccccChhhcccccc
Confidence            455566666666655532 2 3455556666666665554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=5.1e-07  Score=79.65  Aligned_cols=42  Identities=29%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             hCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCC
Q 047929          168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFG  209 (790)
Q Consensus       168 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~  209 (790)
                      +..+++|+.|++++|.++.+....+....+|+.|++++|.+.
T Consensus        87 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          87 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            334444444444444444443333333344555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=4.5e-06  Score=73.39  Aligned_cols=80  Identities=23%  Similarity=0.165  Sum_probs=41.3

Q ss_pred             ccceeEEEccCccCCCCC--CcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCc-------ccc
Q 047929          645 LNLVRSIDISMNNFSGEI--PMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQ-------SMS  715 (790)
Q Consensus       645 ~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~-------~l~  715 (790)
                      ++.|++|+|++|+++...  +..+..+++|+.|++++|.++...+-.+.....|++|++++|++......       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            455666666666665321  23345566666666666666533222222334566666666666543321       234


Q ss_pred             CCCCCCEEE
Q 047929          716 SLSFLNHLN  724 (790)
Q Consensus       716 ~l~~L~~L~  724 (790)
                      .+++|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            455566554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.38  E-value=3.4e-05  Score=67.95  Aligned_cols=65  Identities=9%  Similarity=0.125  Sum_probs=32.0

Q ss_pred             cCCCCCCEEeCCCCC-CCCC---CcCccccCCCCCCEEeCCCCcccccC----CCCCCCCCCCcEEECcCCcc
Q 047929           68 VDLKHLNLLDLSGND-FQGI---QIPEYIGSMDNLRYLNLSGAGFAGWI----PHQLGNLSNLMHLDLSGSYY  132 (790)
Q Consensus        68 ~~l~~L~~L~Ls~~~-~~~~---~l~~~~~~l~~L~~L~Ls~~~~~~~l----p~~l~~l~~L~~L~ls~~~~  132 (790)
                      .+.++|+.|+|++++ +...   .+..++...++|++|++++|.+....    ...+...+.|++|++++|.+
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL   84 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc
Confidence            345666667776532 3321   12233445556666666666654321    12233345555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.22  E-value=0.00013  Score=64.08  Aligned_cols=37  Identities=11%  Similarity=0.145  Sum_probs=16.2

Q ss_pred             CCCCCEEeCCCC-ccccc----CCCCCCCCCCCcEEECcCCc
Q 047929           95 MDNLRYLNLSGA-GFAGW----IPHQLGNLSNLMHLDLSGSY  131 (790)
Q Consensus        95 l~~L~~L~Ls~~-~~~~~----lp~~l~~l~~L~~L~ls~~~  131 (790)
                      .++|+.|+|+++ .+...    +..++...++|++|++++|.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~   55 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA   55 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc
Confidence            355555555543 23221    22233444445555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.95  E-value=3.5e-05  Score=67.90  Aligned_cols=65  Identities=11%  Similarity=0.130  Sum_probs=34.2

Q ss_pred             cCCCCCCEEeCCCC-CCCCCC---cCccccCCCCCCEEeCCCCccccc----CCCCCCCCCCCcEEECcCCcc
Q 047929           68 VDLKHLNLLDLSGN-DFQGIQ---IPEYIGSMDNLRYLNLSGAGFAGW----IPHQLGNLSNLMHLDLSGSYY  132 (790)
Q Consensus        68 ~~l~~L~~L~Ls~~-~~~~~~---l~~~~~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~ls~~~~  132 (790)
                      .+.+.|++|+|+++ .+....   +..++...++|++|++++|.+...    +...+...+.++.+++++|.+
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            45566666666653 343221   233444566666666666665442    223334455666666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.64  E-value=0.00018  Score=63.14  Aligned_cols=88  Identities=15%  Similarity=0.086  Sum_probs=46.1

Q ss_pred             ccCCCCCCEEeCCCC-ccccc----CCCCCCCCCCCcEEECcCCccccccc--CccccCCCCCCcEEECCCCCCCCC--c
Q 047929           92 IGSMDNLRYLNLSGA-GFAGW----IPHQLGNLSNLMHLDLSGSYYELRVE--DISWLAGPSLLEHLDTSDVDLIKA--S  162 (790)
Q Consensus        92 ~~~l~~L~~L~Ls~~-~~~~~----lp~~l~~l~~L~~L~ls~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~--~  162 (790)
                      ..+.+.|++|+++++ .++..    +..++...++|++|++++|.+.....  ....+...++++.+++.++.+...  .
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            345678888888763 45432    34455667778888887775432211  112233445555555555544433  3


Q ss_pred             hhHHhhCCCCCCCEEEc
Q 047929          163 DWLLVINSLPSLKVLKL  179 (790)
Q Consensus       163 ~~~~~l~~l~~L~~L~l  179 (790)
                      .+...+...+.|+.+.|
T Consensus        93 ~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          93 ALVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHhCccccEEee
Confidence            33344444444544433