Citrus Sinensis ID: 047946

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
LLLAARFSLLVSFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKPKDSMPNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV
cHHHHHHHHHHHHHHHccccccccEEEEEcccccccccccccHHHHHHHHHHHHHccccccEEEEcccEEEEEEEEEEcccccEEEEEEEcEEEEEEEccEEEEEcEEEEccccccccccccccccccccccEEEEEEEccEEEEccEEEcccccEEEEEcEEEEEEEEEEEEEcccccccEEEEEEEEcccccEEEEcccccccccEEEEEEEEcEEEEccccEEEEEEEcccccEEEEEEEEEcEEEEcccccEEEEEEEcccccccccccccccEEEEEEEEEEEEEEEEEEccccEEEEccccEEEEEEEEcccccc
cHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccHHHHHHHHHHHHccccccEEEEEcccEEEEEEEEEEccccccEEEEEEEEEEEcccccEEEEEcEEEcccccHHHccccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccEEEEEEEEcccccEEEEEccccccccccEEEEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEEEEEEEEEccccccEEEEcccccccccEEcccccc
LLLAARFSLLVSFITSvrgidatnrvlnvkdfgavadgitddskafDTSWReawnwdgikgtvlvppgkylvsfaefegpckaSISFQLQGLLDLFsidtslslakgtfhgqgetawplnqchknsdcqlptpirfnflndstitgiksvdsryFHINILGcynlklndlkitahadsskdiLVSEVfcgpgqgisvgslgkgikdeevvgltvrnctftctsngvrvktwpdshigiasnftfEDIVmnnvenpividqlycpynkcnikpkdsmpnieignrnlvyngvnvkvegpettslcsnvkptlfgkqipatcv
LLLAARFSLLVSfitsvrgidatnrvlnvkdfgavadgitddsKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRnctftctsngvrvktwpdshIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKPKDSMPNIEIGNRNLVYNGVNVKVEGPettslcsnvkptlfgkqipatcv
LLLAARFSLLVSFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKPKDSMPNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV
**LAARFSLLVSFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKPKDSMPNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLFG********
LLLAARFSLLVSFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCP***************EIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV
LLLAARFSLLVSFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKPKDSMPNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV
LLLAARFSLLVSFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKPKDSMPNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV
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oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LLLAARFSLLVSFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKPKDSMPNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query321 2.2.26 [Sep-21-2011]
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.912 0.777 0.356 4e-58
Q39786407 Polygalacturonase OS=Goss N/A no 0.984 0.776 0.362 5e-56
Q39766407 Polygalacturonase OS=Goss N/A no 0.965 0.761 0.349 2e-55
P24548362 Exopolygalacturonase (Fra N/A no 0.853 0.756 0.369 4e-55
P49063444 Exopolygalacturonase clon yes no 0.894 0.646 0.375 4e-51
Q05967396 Polygalacturonase OS=Nico N/A no 0.956 0.775 0.315 1e-49
P35337397 Polygalacturonase OS=Bras N/A no 0.791 0.639 0.346 1e-45
Q40312421 Polygalacturonase OS=Medi N/A no 0.940 0.717 0.329 2e-45
P49062422 Exopolygalacturonase clon no no 0.813 0.618 0.333 2e-40
P35339410 Exopolygalacturonase OS=Z N/A no 0.890 0.697 0.283 7e-38
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function desciption
 Score =  225 bits (573), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 136/381 (35%), Positives = 192/381 (50%), Gaps = 88/381 (23%)

Query: 18  RGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEF 77
           RG+ ++  V NV D+GA   G  D S+A   +W+ A    G   TVL+P G Y +     
Sbjct: 1   RGVQSSGSVFNVNDYGA--KGAGDISQAVMKAWKAACASQG-PSTVLIPKGNYNMGEVAM 57

Query: 78  EGPCKAS-ISFQLQGLL---------------DLFSIDTSLSLAKGTFHGQGETAWPLNQ 121
           +GPCK S I FQ+ G++                 + ID       GT  GQG+TAW  N 
Sbjct: 58  QGPCKGSKIGFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNN 117

Query: 122 CHKNSDCQ-LPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADS-- 178
           C KN +C+     +RF+FL  + +  I S++S+ FHIN+L C ++    + +TA   S  
Sbjct: 118 CDKNPNCKHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSIN 177

Query: 179 -------------------------------SKDILVSEVFCGPGQGISVGSLGKGIKDE 207
                                          S+++ +++V CGPG GIS+GSLG+   ++
Sbjct: 178 TDGIHVGISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEK 237

Query: 208 EVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNK 267
           EV G+TV+ CTF+ T NGVRVKTWP+S  G A++ TF+D+ MNNV+NP+++DQ YCPY +
Sbjct: 238 EVRGITVKGCTFSGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQNPVILDQEYCPYGQ 297

Query: 268 CN----------------------------IKPKDSMP--NIEIGNRNLVYNGVNVKVEG 297
           C+                            I     MP  N++IG  NL Y G      G
Sbjct: 298 CSRQAPSRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGA-----G 352

Query: 298 PETTSLCSNVKPTLFGKQIPA 318
              TS CSNVKPT  GKQ+PA
Sbjct: 353 GPATSTCSNVKPTFSGKQVPA 373
May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase.
Platanus acerifolia (taxid: 140101)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 6EC: 7
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|P24548|PGLR_OENOR Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1 Back     alignment and function description
>sp|P49063|PGLR2_ARATH Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2 Back     alignment and function description
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1 Back     alignment and function description
>sp|P35337|PGLR_BRANA Polygalacturonase OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q40312|PGLR_MEDSA Polygalacturonase OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1 Back     alignment and function description
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
297833576 449 exopolygalacturonase [Arabidopsis lyrata 0.940 0.672 0.375 5e-57
225446732395 PREDICTED: polygalacturonase [Vitis vini 0.894 0.726 0.382 6e-57
225447625395 PREDICTED: polygalacturonase [Vitis vini 0.900 0.731 0.377 1e-56
162949338378 pollen allergen Pla o 2 [Platanus orient 0.915 0.777 0.366 1e-56
51316214377 RecName: Full=Exopolygalacturonase; AltN 0.912 0.777 0.356 3e-56
225446736395 PREDICTED: polygalacturonase [Vitis vini 0.894 0.726 0.377 4e-56
449453736402 PREDICTED: exopolygalacturonase clone GB 0.953 0.761 0.361 5e-56
302121712398 polygalacturonase [Hypericum perforatum] 0.965 0.778 0.355 1e-55
296084975 452 unnamed protein product [Vitis vinifera] 0.881 0.626 0.375 3e-55
302143491 1080 unnamed protein product [Vitis vinifera] 0.884 0.262 0.378 4e-55
>gi|297833576|ref|XP_002884670.1| exopolygalacturonase [Arabidopsis lyrata subsp. lyrata] gi|297330510|gb|EFH60929.1| exopolygalacturonase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 147/391 (37%), Positives = 185/391 (47%), Gaps = 89/391 (22%)

Query: 11  VSFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKY 70
            S    V G  A    L+VK  GA  DG TDDS AF  +W+EA        T+ VP G+Y
Sbjct: 59  ASVGAKVPGAKAGGASLDVKASGAKGDGKTDDSAAFMAAWKEAC---AAGSTITVPKGEY 115

Query: 71  LVSFAEFEGPCKASISFQLQGLLDLFSI-----------------DTSLSLAKGTFHGQG 113
           LV   EF+GPCK  ++ +L G L   +                  D +L+  K  F GQG
Sbjct: 116 LVESLEFKGPCKGPVTLELNGNLKAPATVKTTKPHAGWIDFENLADFTLNGNKAIFDGQG 175

Query: 114 ETAWPLNQCHKNSDC-QLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKI 172
             AW  N C K   C  LP  IRF  L +S I  I S +S+ FH+NIL C N+ L D+ I
Sbjct: 176 SLAWKANDCAKTGKCNSLPINIRFTGLTNSKIKSITSTNSKLFHMNILNCKNITLEDIGI 235

Query: 173 TAH---------------------------------ADSSKDILVSEVFCGPGQGISVGS 199
            A                                   D +++++V  V CGPG GIS+GS
Sbjct: 236 DAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGS 295

Query: 200 LGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVID 259
           LG+   ++ V G+TVR C    T NGVR+KTWP S  GIASN  FEDI M+NV  P++ID
Sbjct: 296 LGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSTPVLID 355

Query: 260 QLYCPYNKC----------------NIKPKDSMP--------------NIEIGNRNLVYN 289
           Q YCPY  C                NIK   +                NI + + NLV+N
Sbjct: 356 QEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHN 415

Query: 290 GVNVKVEGPETTSLCSNVKPTLFGKQIPATC 320
           G     EGP   S CSN+KP L GK +PA C
Sbjct: 416 G----KEGP-AVSACSNIKPILSGKLVPAAC 441

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446732|ref|XP_002282573.1| PREDICTED: polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225447625|ref|XP_002274125.1| PREDICTED: polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|162949338|gb|ABY21306.1| pollen allergen Pla o 2 [Platanus orientalis] Back     alignment and taxonomy information
>gi|51316214|sp|Q6H9K0.1|PGLR2_PLAAC RecName: Full=Exopolygalacturonase; AltName: Full=Pollen allergen Pla a 2; AltName: Allergen=Pla a 2; Flags: Precursor gi|49523394|emb|CAE52833.1| polygalacturonase [Platanus x acerifolia] Back     alignment and taxonomy information
>gi|225446736|ref|XP_002282594.1| PREDICTED: polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453736|ref|XP_004144612.1| PREDICTED: exopolygalacturonase clone GBGA483-like [Cucumis sativus] gi|449506926|ref|XP_004162886.1| PREDICTED: exopolygalacturonase clone GBGA483-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302121712|gb|ADK92878.1| polygalacturonase [Hypericum perforatum] Back     alignment and taxonomy information
>gi|296084975|emb|CBI28390.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143491|emb|CBI22052.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
TAIR|locus:2164773395 AT5G48140 [Arabidopsis thalian 0.323 0.263 0.5 1.3e-56
TAIR|locus:2077402391 AT3G07820 [Arabidopsis thalian 0.342 0.281 0.459 3.8e-55
TAIR|locus:2077412397 AT3G07830 [Arabidopsis thalian 0.323 0.261 0.509 7.6e-53
TAIR|locus:2077437401 AT3G07840 [Arabidopsis thalian 0.401 0.321 0.432 5.3e-49
TAIR|locus:2141877414 AT4G18180 [Arabidopsis thalian 0.327 0.253 0.462 1.6e-46
TAIR|locus:2024680422 PGA4 "polygalacturonase 4" [Ar 0.498 0.379 0.325 8.3e-42
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.292 0.238 0.425 1.3e-41
TAIR|locus:2031963394 AT1G05660 [Arabidopsis thalian 0.267 0.218 0.465 6.2e-41
TAIR|locus:2080422388 AT3G59850 [Arabidopsis thalian 0.414 0.342 0.437 1.4e-39
TAIR|locus:2043924384 AT2G43870 [Arabidopsis thalian 0.373 0.312 0.440 1.5e-37
TAIR|locus:2164773 AT5G48140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 273 (101.2 bits), Expect = 1.3e-56, Sum P(3) = 1.3e-56
 Identities = 54/108 (50%), Positives = 73/108 (67%)

Query:   177 DSSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHI 236
             D  K++LV  V CGPG GIS+GSLG+   +E V G+ + NCT   T NG+R+KTWP +  
Sbjct:   217 DGMKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAAC 276

Query:   237 GI-ASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKPKDSMPNIEIGN 283
                AS+  FE+I++ NV NPI+IDQ YCP+N+CN K K S   I++ N
Sbjct:   277 TTTASDIHFENILLKNVSNPILIDQEYCPWNQCN-KQKPS--TIKLAN 321
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0009827 "plant-type cell wall modification" evidence=RCA
TAIR|locus:2077402 AT3G07820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077412 AT3G07830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077437 AT3G07840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141877 AT4G18180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024680 PGA4 "polygalacturonase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080422 AT3G59850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043924 AT2G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 4e-74
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 4e-50
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-48
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 1e-39
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 5e-39
PLN03010409 PLN03010, PLN03010, polygalacturonase 5e-38
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 1e-34
COG5434 542 COG5434, PGU1, Endopygalactorunase [Cell envelope 3e-08
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 5e-07
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-04
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information 
 Score =  233 bits (596), Expect = 4e-74
 Identities = 134/367 (36%), Positives = 191/367 (52%), Gaps = 75/367 (20%)

Query: 28  NVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCK--ASI 85
           +V+ FGA A+G TDDSKAF  +W+ A    G   T+L+PPG Y +   +F GPC   +S+
Sbjct: 38  DVRSFGARANGHTDDSKAFMAAWKAACASTG-AVTLLIPPGTYYIGPVQFHGPCTNVSSL 96

Query: 86  SFQLQGLLDL-----------FSIDTSLSLAKG-TFHGQGETAWPLNQCHKNSDCQ-LPT 132
           +F L+   DL           F     L+L  G TF GQG  AWP N+C    DC+ LPT
Sbjct: 97  TFTLKAATDLSRYGSGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPT 156

Query: 133 PIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADS-------------- 178
            ++F  +N++ + GI SV+S++FHI ++ C N K + LKI+A +DS              
Sbjct: 157 SVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGV 216

Query: 179 -------------------SKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTF 219
                              +  + ++ + CGPG GISVGSLG+   + +V GL VR+CTF
Sbjct: 217 YISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTF 276

Query: 220 TCTSNGVRVKTWPDS-HIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKC---------- 268
           T T+NG+R+KTW +S     A+N TFE+IVMNNV NPI+IDQ YCP+  C          
Sbjct: 277 TGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTL 336

Query: 269 ------NIKPKDSMP-------NIEIGNRNLVYNGVNVKVEGPE--TTSLCSNVKPTLFG 313
                 NI+   S         +  +  + +    V++ +   E  T+S C NV+    G
Sbjct: 337 SDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIG 396

Query: 314 KQIPATC 320
            QIP  C
Sbjct: 397 TQIPPPC 403

Length = 404
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 321
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.9
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.87
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.45
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.4
PLN02793443 Probable polygalacturonase 99.24
PLN03010409 polygalacturonase 99.18
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.1
PLN03003 456 Probable polygalacturonase At3g15720 99.09
PLN02155394 polygalacturonase 99.09
PLN02218431 polygalacturonase ADPG 99.09
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.0
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 98.4
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.34
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 98.24
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.16
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.06
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.01
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 97.95
PLN02682369 pectinesterase family protein 97.93
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 97.92
smart00656190 Amb_all Amb_all domain. 97.88
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.87
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.82
PLN02773317 pectinesterase 97.7
PLN02480343 Probable pectinesterase 97.58
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.56
PLN02665366 pectinesterase family protein 97.51
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.51
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.43
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.4
PLN02497331 probable pectinesterase 97.38
PLN02304379 probable pectinesterase 97.3
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.25
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.21
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.2
PLN02671359 pectinesterase 97.18
PLN02634359 probable pectinesterase 97.16
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.15
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.15
PLN02916502 pectinesterase family protein 97.14
PLN02176340 putative pectinesterase 97.12
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 97.12
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.11
PLN02301548 pectinesterase/pectinesterase inhibitor 97.11
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.07
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.04
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.03
PLN02432293 putative pectinesterase 97.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 96.99
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 96.97
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 96.95
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 96.92
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 96.9
PLN02313587 Pectinesterase/pectinesterase inhibitor 96.9
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.89
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.82
PLN02468565 putative pectinesterase/pectinesterase inhibitor 96.72
PRK10531422 acyl-CoA thioesterase; Provisional 96.55
PLN02197588 pectinesterase 96.53
PLN02314586 pectinesterase 96.42
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.33
smart00656190 Amb_all Amb_all domain. 96.28
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.99
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.42
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 94.93
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 94.66
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 94.01
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 91.31
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 82.3
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 80.45
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=6.8e-70  Score=518.30  Aligned_cols=309  Identities=36%  Similarity=0.689  Sum_probs=271.7

Q ss_pred             hhhhhHHHHHHHHhhhcccCCceEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCC
Q 047946            4 AARFSLLVSFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKA   83 (321)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s   83 (321)
                      |.+|-+++.||.++++.+..+++|||+||||+|||++|||+|||+||++||++.| |++|+||+|+|+++++.|+|||||
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~g-Gg~v~vP~G~yl~g~i~l~gpcks   83 (394)
T PLN02155          5 AITFPLLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAS-SATVVVPTGTFLLKVITFGGPCKS   83 (394)
T ss_pred             eeehhHHHHHHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCC-CeEEEECCCcEEEEEEEEcccCCC
Confidence            3456666667778888999999999999999999999999999999987899888 899999999999999999999999


Q ss_pred             ceEEEEcCeEEE-------------EEEcC--CeEEeccEEEeccccccCCccCCCCCCCC-CCeeEEEEeecceEEece
Q 047946           84 SISFQLQGLLDL-------------FSIDT--SLSLAKGTFHGQGETAWPLNQCHKNSDCQ-LPTPIRFNFLNDSTITGI  147 (321)
Q Consensus        84 ~v~l~i~G~l~~-------------i~~~~--ni~I~GG~idG~G~~~w~~~~~~~~~~~~-rp~~i~~~~~~nv~I~~i  147 (321)
                      +++|+|+|+|++             +.|.+  ++.|+||+|||||+.||...  +...+++ +|+++.|.+|+|++|+++
T Consensus        84 nv~l~l~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~--~~~~~~~~~p~~i~~~~~~nv~i~gi  161 (394)
T PLN02155         84 KITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCR--KSGQNCPPGVRSISFNSAKDVIISGV  161 (394)
T ss_pred             CceEEEeeEEECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcc--cCCCCCCCcccceeEEEeeeEEEECe
Confidence            999999998864             56666  89999999999999999753  2222333 789999999999999999


Q ss_pred             eEeCCCCeEEEEEceeeEEEEeeEEecCCCC---------------------------------cccEEEEeEEEcCCCe
Q 047946          148 KSVDSRYFHINILGCYNLKLNDLKITAHADS---------------------------------SKDILVSEVFCGPGQG  194 (321)
Q Consensus       148 ti~ns~~~~i~~~~s~nv~i~nv~I~~~~~~---------------------------------s~nI~I~n~~~~~~~G  194 (321)
                      +++|||+|++++..|+|+++++++|.++.++                                 ++||+|+|++|.++||
T Consensus       162 tl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhG  241 (394)
T PLN02155        162 KSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHG  241 (394)
T ss_pred             EEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCce
Confidence            9999999999999999999999999987642                                 7899999999999999


Q ss_pred             eEEeecCCCCCCCcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecCCccEEEEeeecCCC-CCCCCCC
Q 047946          195 ISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYN-KCNIKPK  273 (321)
Q Consensus       195 I~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~~i~i~~~y~~~~-~~~~~ps  273 (321)
                      |+|||+|++.+.+.|+||+|+||+|.++.+|+|||||.++++|+|+||+|+||+|+++++||+|+|+|++.. .|+..++
T Consensus       242 isIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s  321 (394)
T PLN02155        242 VSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYS  321 (394)
T ss_pred             EEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCC
Confidence            999999988767899999999999999999999999976557999999999999999999999999998643 2431110


Q ss_pred             ---------------------------CC-C-CCEEEEeeEEEecCcccccCCCCCcceeeeeeecccccccCCCCC
Q 047946          274 ---------------------------DS-M-PNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV  321 (321)
Q Consensus       274 ---------------------------~~-~-~ni~~~nI~i~~~~~~~~~~~~~~~~~C~n~~g~~~~~~~p~~c~  321 (321)
                                                 +. . +||+|+||+++.+++.     + ..++|+||+|.+.|.++|++|+
T Consensus       322 ~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~-----~-~~~~C~n~~G~~~~~~~p~~c~  392 (394)
T PLN02155        322 GVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGT-----P-ATSFCFNAVGKSLGVIQPTSCL  392 (394)
T ss_pred             CeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCC-----c-cCcEEeccEeEEcccCCccccc
Confidence                                       23 3 8999999999998754     5 6899999999999988999996

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 5e-06
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 8e-06
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 1e-05
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 4e-04
1nhc_A336 Structural Insights Into The Processivity Of Endopo 7e-04
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure 
Iteration: 1

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 121/306 (39%), Gaps = 77/306 (25%)
Query: 61  GTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKG-TFHGQGETAWPL 119
           GT ++  G+    + E+ GP           L+ +   D +++ A G + +G G   W  
Sbjct: 46  GTHVIFSGETTFGYKEWSGP-----------LISVSGSDLTITGASGHSINGDGSRWW-- 92
Query: 120 NQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKIT------ 173
           +    N     P     + L +S I+G+K V+S     ++ G   L L D+ I       
Sbjct: 93  DGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDD 152
Query: 174 --AH----------------------------ADSSKDILVSEVFCGPGQGISVGSLGKG 203
              H                             +S ++I  S  +C  G G+S+GS+G G
Sbjct: 153 NGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSGENIYFSGGYCSGGHGLSIGSVG-G 211
Query: 204 IKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVEN-PIVIDQLY 262
             D  V  +T  + T   + NGVR+KT  D+  G  S+ T++DI + ++    IV+ Q  
Sbjct: 212 RSDNTVKNVTFVDSTIINSDNGVRIKTNIDT-TGSVSDVTYKDITLTSIAKYGIVVQQ-- 268
Query: 263 CPYNKCNIKPKDSMPNIEIGNRN----LVYNGVN-----------------VKVEGPETT 301
             Y   +  P   +P  +    N    +V +G N                 V V G +T+
Sbjct: 269 -NYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVSGGKTS 327
Query: 302 SLCSNV 307
           S C+NV
Sbjct: 328 SKCTNV 333
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 3e-66
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 9e-58
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 7e-50
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 3e-47
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 5e-47
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 6e-47
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 4e-44
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 4e-42
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 7e-41
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-33
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-24
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 3e-23
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 7e-22
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 1e-07
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 1e-05
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 2e-05
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 1e-04
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 3e-04
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  213 bits (543), Expect = 3e-66
 Identities = 65/373 (17%), Positives = 115/373 (30%), Gaps = 96/373 (25%)

Query: 22  ATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKY-LVSFAEFEGP 80
              +  N+  +GAVAD  TD   A       AW      G V +P G Y L ++    G 
Sbjct: 16  GATKTCNILSYGAVADNSTDVGPAI----TSAWAACKSGGLVYIPSGNYALNTWVTLTGG 71

Query: 81  CKASISFQLQGLLDLFSIDTSLSLA---------------KGTFHGQGETAWPLNQCHKN 125
                + QL G++   +   S ++                KG   G G            
Sbjct: 72  SA--TAIQLDGII-YRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEG----- 123

Query: 126 SDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITA---------HA 176
                   +R   +   ++  I  VD+  FH  +  C + ++ ++ I             
Sbjct: 124 --TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNEGGLDGIDV 181

Query: 177 DSS----------------------KDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTV 214
             S                       +ILV  ++C    G ++GSLG    D +V  +  
Sbjct: 182 WGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVY 238

Query: 215 RNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKPKD 274
           RN     ++    +K+   S  G  SN   E+ + +     + ID  +           D
Sbjct: 239 RNVYTWSSNQMYMIKSNGGS--GTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV---AGD 293

Query: 275 SMP--NIEIGN------------------------RNLVYNGVNVKVE-GPETTSLCSNV 307
            +   NI + N                         +L    + +  E G     LC + 
Sbjct: 294 GVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSA 353

Query: 308 KPTLFGKQIPATC 320
             + +  +  ++ 
Sbjct: 354 YGSGYCLKDSSSH 366
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.96
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.93
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.9
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.57
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.53
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.51
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.5
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.48
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.48
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.46
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.43
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.33
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.28
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.26
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.24
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.22
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.14
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.11
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.83
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.82
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.57
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.36
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.27
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.2
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.2
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.19
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.18
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.18
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.14
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.04
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.03
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.03
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.01
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 97.95
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.94
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.78
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.73
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.7
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 97.65
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.51
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.93
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 96.78
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.73
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.57
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.41
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.96
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.82
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.79
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.57
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.49
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.4
2inu_A410 Insulin fructotransferase; right-handed parallel b 94.21
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 93.74
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 93.45
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 93.45
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 90.7
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 87.92
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 87.29
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 83.32
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 80.68
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=1.3e-53  Score=414.55  Aligned_cols=272  Identities=22%  Similarity=0.330  Sum_probs=226.8

Q ss_pred             hhhhhHHHHHHHHhhhcccCCceEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCC
Q 047946            4 AARFSLLVSFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKA   83 (321)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s   83 (321)
                      |++..+.-.++--+-.+...++++||+||||+|||.+|||+|||+||+ +|++.+ +++|+||+|+|+++++.|+    |
T Consensus         5 ~~~~~~~~~i~~~~~~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~g-gg~v~vP~G~yl~~~l~l~----s   78 (448)
T 3jur_A            5 ELAKKIEEEILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIE-ELSKQG-GGRLIVPEGVFLTGPIHLK----S   78 (448)
T ss_dssp             CHHHHHHHHHHHHCCCCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHHT-CEEEEECSSEEEESCEECC----T
T ss_pred             HHHHHHHHHHHhhccCCCCCCcEEEEEecccCCCCCeecHHHHHHHHH-hhhhcC-CeEEEECCCcEEEeeeEeC----C
Confidence            355556666666666777788899999999999999999999999995 676656 7899999999999999998    9


Q ss_pred             ceEEEEcCeEEE--------------------------EEEcC--CeEEec-cEEEecc--ccccCCccCC---------
Q 047946           84 SISFQLQGLLDL--------------------------FSIDT--SLSLAK-GTFHGQG--ETAWPLNQCH---------  123 (321)
Q Consensus        84 ~v~l~i~G~l~~--------------------------i~~~~--ni~I~G-G~idG~G--~~~w~~~~~~---------  123 (321)
                      +++|+++|+|++                          |.+.+  ||+|+| |+|||+|  +.||+....+         
T Consensus        79 ~v~l~l~gtL~~s~d~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~  158 (448)
T 3jur_A           79 NIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLP  158 (448)
T ss_dssp             TEEEEESSEEEECCCGGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSC
T ss_pred             CcEEEEEEEEEecCCHHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhccccccccccccc
Confidence            999999999987                          23344  999999 9999999  8899753110         


Q ss_pred             ------------------------CCCCCCCCeeEEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecCC---
Q 047946          124 ------------------------KNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHA---  176 (321)
Q Consensus       124 ------------------------~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~~---  176 (321)
                                              ......||+++.|.+|+|++|+|++++|||+|++++..|+|++|+|++|.++.   
T Consensus       159 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~~~Nt  238 (448)
T 3jur_A          159 NQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNN  238 (448)
T ss_dssp             CSHHHHHHHHHHHHHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEECSTTC
T ss_pred             ccccchhhhhhhhcccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeeccCCC
Confidence                                    01123499999999999999999999999999999999999999999999852   


Q ss_pred             CC---------------------------------------cccEEEEeEEE--cCCC-eeEEeecCCCCCCCcEEEEEE
Q 047946          177 DS---------------------------------------SKDILVSEVFC--GPGQ-GISVGSLGKGIKDEEVVGLTV  214 (321)
Q Consensus       177 ~~---------------------------------------s~nI~I~n~~~--~~~~-GI~iGS~G~~~~~~~v~nI~v  214 (321)
                      |.                                       ++||+|+||+|  .++| ||+|||++    .+.++||+|
T Consensus       239 DGidi~~s~nV~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v  314 (448)
T 3jur_A          239 DGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVA  314 (448)
T ss_dssp             CSBCCBSCEEEEEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEE
T ss_pred             ccccccCCcCEEEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEE
Confidence            11                                       47999999999  7777 89999984    578999999


Q ss_pred             EeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecCCccE-EEEeeecCCCCCCCCCCCCCCCEEEEeeEEEec
Q 047946          215 RNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPI-VIDQLYCPYNKCNIKPKDSMPNIEIGNRNLVYN  289 (321)
Q Consensus       215 ~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~~i-~i~~~y~~~~~~~~~ps~~~~ni~~~nI~i~~~  289 (321)
                      +||+|.++.+|+|||+|.+. +|.|+||+|+||+|+++.+|+ +|+|+|+..  +...+ +.++||+|+||+.+..
T Consensus       315 ~n~~~~~t~~GirIKt~~g~-gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~--~~~~~-~~i~nI~~~NI~~t~~  386 (448)
T 3jur_A          315 RNNVYMNVERALRLKTNSRR-GGYMENIFFIDNVAVNVSEEVIRINLRYDNE--EGEYL-PVVRSVFVKNLKATGG  386 (448)
T ss_dssp             ESCEEESCSEEEEEECCTTT-CSEEEEEEEESCEEEEESSEEEEEESCGGGC--CCSCC-CEEEEEEEESCEEEEC
T ss_pred             EEEEEecccceEEEEEEcCC-CceEeeEEEEEEEEECCccccEEEEeeccCC--CCCCC-ceEEEEEEEeEEEEec
Confidence            99999999999999999865 699999999999999999988 999999864  21110 1127777777777653
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 321
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 2e-44
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 5e-34
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-29
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 6e-29
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 7e-27
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-23
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 1e-21
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-19
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  154 bits (390), Expect = 2e-44
 Identities = 64/363 (17%), Positives = 114/363 (31%), Gaps = 90/363 (24%)

Query: 22  ATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKY-LVSFAEFEGP 80
              +  N+  +GAVAD  TD   A       AW      G V +P G Y L ++    G 
Sbjct: 16  GATKTCNILSYGAVADNSTDVGPAI----TSAWAACKSGGLVYIPSGNYALNTWVTLTGG 71

Query: 81  CKASISFQLQGLLDLFSIDTSLSL---------------AKGTFHGQGETAWPLNQCHKN 125
                + QL G++   +   S ++               +KG   G G            
Sbjct: 72  SA--TAIQLDGII-YRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYG-- 126

Query: 126 SDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADS------- 178
                   +R   +   ++  I  VD+  FH  +  C + ++ ++ I    +        
Sbjct: 127 -----ARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNEGGLDGIDV 181

Query: 179 ------------------------SKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTV 214
                                   + +ILV  ++C    G ++GSLG    D +V  +  
Sbjct: 182 WGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVY 238

Query: 215 RNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKC------ 268
           RN     ++    +K+   S  G  SN   E+ + +     + ID  +            
Sbjct: 239 RNVYTWSSNQMYMIKSNGGS--GTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQ 296

Query: 269 -------NIK----PKDSMPNIEI------GNRNLVYNGVNVKVE-GPETTSLCSNVKPT 310
                  N K       + P I +         +L    + +  E G     LC +   +
Sbjct: 297 LNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGS 356

Query: 311 LFG 313
            + 
Sbjct: 357 GYC 359
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.65
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.23
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.15
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.13
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.1
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.02
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 98.84
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 98.62
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 98.61
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.19
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.82
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.72
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.58
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.55
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.5
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.48
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.41
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.1
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.98
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.76
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.74
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.71
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 94.93
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.08
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 93.95
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 89.58
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 88.38
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 83.04
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 81.9
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1.9e-53  Score=409.06  Aligned_cols=266  Identities=21%  Similarity=0.361  Sum_probs=227.9

Q ss_pred             CCceEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCceEEEe-eeeeecccCCceEEEEcCeEEE------
Q 047946           23 TNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVS-FAEFEGPCKASISFQLQGLLDL------   95 (321)
Q Consensus        23 ~~~~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~-~l~l~g~~~s~v~l~i~G~l~~------   95 (321)
                      ..++|||+||||+|||++|||+|||+|| +||+.   +++||||+|+|++. ++.|+|+  +++.|+++|+|++      
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai-~ac~~---gg~V~iP~Gty~l~~~i~l~g~--~~~~l~~~G~i~~~~~~~~   90 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAW-AACKS---GGLVYIPSGNYALNTWVTLTGG--SATAIQLDGIIYRTGTASG   90 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHH-HHHTB---TCEEEECSSEEEECSCEEEESC--EEEEEEECSEEEECCCCSS
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHH-HhcCC---CCEEEECCCcEEEeCcEEEcCC--CceEEEEeEEEEeccCCcc
Confidence            4679999999999999999999999999 67864   46999999999776 5999987  6789999999876      


Q ss_pred             --EEEcC-----CeEEec-cEEEeccccccCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCeEEEEEceeeEEE
Q 047946           96 --FSIDT-----SLSLAK-GTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKL  167 (321)
Q Consensus        96 --i~~~~-----ni~I~G-G~idG~G~~~w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i  167 (321)
                        +.+.+     .+.+.| |+|||+|+.||...       ..+|++++|.+|+|+.|++++++|+|.||+++..|++++|
T Consensus        91 ~~~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~-------~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~v~i  163 (422)
T d1rmga_          91 NMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEG-------TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEV  163 (422)
T ss_dssp             EEEEEEEEEEEEEECSSSCCEEECCTHHHHTTT-------CCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEEEE
T ss_pred             CEEEeccCccEEEEEeecceEEecCcceecCCC-------CCCCcEEEEEeeeeeEEECcEecCCCceEEEEeccccEEE
Confidence              22222     456678 99999999999742       1379999999999999999999999999999999999999


Q ss_pred             EeeEEecCCCC-------------------------------cccEEEEeEEEcCCCeeEEeecCCCCCCCcEEEEEEEe
Q 047946          168 NDLKITAHADS-------------------------------SKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRN  216 (321)
Q Consensus       168 ~nv~I~~~~~~-------------------------------s~nI~I~n~~~~~~~GI~iGS~G~~~~~~~v~nI~v~n  216 (321)
                      +|++|.++...                               ++||+|+|++|.++||++|||+|.   +..++||+|+|
T Consensus       164 ~nv~I~~~~~~NtDGIdi~~snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~V~nV~v~n  240 (422)
T d1rmga_         164 YNMAIRGGNEGGLDGIDVWGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVYRN  240 (422)
T ss_dssp             EEEEEECCSSTTCCSEEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEEEEEEEEEE
T ss_pred             EeeEEcCCCCCccceEeecccEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCCEEEEEEEe
Confidence            99999975421                               789999999999999999999975   35799999999


Q ss_pred             eEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecCCccEEEEeeecCCCCCCCCC------------------------
Q 047946          217 CTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKP------------------------  272 (321)
Q Consensus       217 ~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~~i~i~~~y~~~~~~~~~p------------------------  272 (321)
                      |++.++.+|++||++.|  .|.|+||+|+||+|+++.+||+|+|+|++...+..+.                        
T Consensus       241 ~~~~~s~~g~~ik~~~g--~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~~~~~v~isnIt~~Ni~GT~~~~~~~~~i  318 (422)
T d1rmga_         241 VYTWSSNQMYMIKSNGG--SGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQLNNITVKNWKGTEANGATRPPI  318 (422)
T ss_dssp             EEEESSSCSEEEEEBBC--CEEEEEEEEEEEEEEEESCSEEEETBCTTSCCBSSSCCEEEEEEEEEEEEEESCTTTSCSE
T ss_pred             EEEeCCCceEEEEEcCC--CceecceEEEEEEEecccccEEEecccCCCCCCCCCCeEEEEEEEEeEEEEecCCcccccE
Confidence            99999999999999875  3999999999999999999999999998765432110                        


Q ss_pred             ----CCCC--CCEEEEeeEEEecCcccccCCCCCcceeeeeeeccc
Q 047946          273 ----KDSM--PNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLF  312 (321)
Q Consensus       273 ----s~~~--~ni~~~nI~i~~~~~~~~~~~~~~~~~C~n~~g~~~  312 (321)
                          ++..  +||+|+||+|+.+.|.     + +.+.|+|++|+..
T Consensus       319 ~l~Cs~~~pc~ni~l~ni~l~~~~g~-----~-~~~~C~na~G~~~  358 (422)
T d1rmga_         319 RVVCSDTAPCTDLTLEDIAIWTESGS-----S-ELYLCRSAYGSGY  358 (422)
T ss_dssp             EEECBTTBCEEEEEEEEEEEEESSSS-----C-EEEEEESEEEEST
T ss_pred             EEEcCCCCCCcceEEEEEEEEcCCCC-----C-cceEEECceeeEE
Confidence                0232  8999999999988764     5 7799999999765
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure