Citrus Sinensis ID: 047968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGDSAEDNGTQGQS
Secondary Structure (PSIPRED)
ccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccHHHHHHHHHHHHHHHHHEccccHHHHHHcccccccHHHHHHEEEEEEHcccccccccHHHcccccc
Coil and Loop (DISEMBL)
pryvvnqvlagnydcprKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRhlangdsaedngtqgqs
Flexible Loop (DISEMBL)
pryvvnqvlagnydcprkVLRFLTDLHAAFRMLNLrndflrkkfdslkydlkRVEEVYYDMKIRhlangdsaedngtqgqs
Low Complexity Region (SEG)
PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGDSAEDNGTQGQS
Disordered region (IsUnstruct)
**YVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHL***************
Disordered Region (DISOPRED)
PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKI******************
Disordered Region (DISEMBL)
PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGD***********
Disordered Region (DISPRO)
PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLAN*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGDSAEDNGTQGQS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
P79769	229	Translin OS=Gallus gallus	yes	no	0.814	0.288	0.515	3e-14
P97891	228	Translin OS=Cricetulus gr	yes	no	0.925	0.328	0.486	2e-13
Q62348	228	Translin OS=Mus musculus	yes	no	0.925	0.328	0.486	2e-13
Q08DM8	228	Translin OS=Bos taurus GN	yes	no	0.790	0.280	0.531	2e-13
Q15631	228	Translin OS=Homo sapiens	yes	no	0.777	0.276	0.539	2e-13
Q5R7P2	228	Translin OS=Pongo abelii	yes	no	0.777	0.276	0.539	2e-13
Q9P7V3	220	Translin-1 OS=Schizosacch	yes	no	0.814	0.3	0.484	3e-12

>sp|P79769|TSN_CHICK Translin OS=Gallus gallus GN=TSN PE=1 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 48/66 (72%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
            R  VN V AG+Y  P ++  F+ +L + FR+LNL+ND LRK++D LKYD+K++EEV YD
Sbjct: 152 ARLAVNSVTAGDYSRPLRISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKIEEVVYD 211

Query: 61  MKIRHL 66
           + IR L
Sbjct: 212 LSIRGL 217

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.
Gallus gallus (taxid: 9031)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|P97891|TSN_CRIGR Translin OS=Cricetulus griseus GN=TSN PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
            R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD
Sbjct: 152 SRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYD 211

Query: 61  MKIRHLANGDSAEDNG 76
           + IR   N ++A   G
Sbjct: 212 LSIRGF-NKETAAACG 226

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Cricetulus griseus (taxid: 10029)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q62348|TSN_MOUSE Translin OS=Mus musculus GN=Tsn PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
            R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD
Sbjct: 152 SRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYD 211

Query: 61  MKIRHLANGDSAEDNG 76
           + IR   N ++A   G
Sbjct: 212 LSIRGF-NKETAAACG 226

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q08DM8|TSN_BOVIN Translin OS=Bos taurus GN=TSN PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 46/64 (71%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
            R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD
Sbjct: 152 SRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYD 211

Query: 61  MKIR 64
           + IR
Sbjct: 212 LSIR 215

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q15631|TSN_HUMAN Translin OS=Homo sapiens GN=TSN PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 46/63 (73%)

Query: 2   RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
           R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD+
Sbjct: 153 RLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 212

Query: 62  KIR 64
            IR
Sbjct: 213 SIR 215

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5R7P2|TSN_PONAB Translin OS=Pongo abelii GN=TSN PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 46/63 (73%)

Query: 2   RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
           R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD+
Sbjct: 153 RLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 212

Query: 62  KIR 64
            IR
Sbjct: 213 SIR 215

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9P7V3|TSN1_SCHPO Translin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsn1 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query: 2   RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
           R  VN V++GNY  P + L  +  +H++F++L+L+ND LR+ FD LKYDLKR E+V YD+
Sbjct: 155 RQSVNSVISGNYHIPFEALNTIQKVHSSFQVLSLKNDSLRRHFDGLKYDLKRSEDVVYDL 214

Query: 62  KIRHLA 67
           +I  L 
Sbjct: 215 RIHKLV 220

DNA-binding protein that specifically recognizes consensus sequences at the breakpoint junctions in chromosomal translocations. Selectively binds single-stranded d(GT)n and d(GTT)n microsatellite repeats. Has much higher affinities for the homologous RNA sequences (GU)n and (GUU)n. Does not bind double-stranded DNA. Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
255556962	299	translin, putative [Ricinus communis] gi	1.0	0.270	0.792	3e-30
359481387	312	PREDICTED: translin [Vitis vinifera]	1.0	0.259	0.683	1e-29
297741623	252	unnamed protein product [Vitis vinifera]	1.0	0.321	0.683	1e-29
224069515	239	predicted protein [Populus trichocarpa]	0.938	0.317	0.812	2e-29
388515527	243	unknown [Lotus japonicus]	0.975	0.325	0.775	3e-29
357510757	237	Translin-like protein [Medicago truncatu	1.0	0.341	0.743	4e-29
14596009	238	translin-like protein [Arabidopsis thali	1.0	0.340	0.768	4e-29
334184743	310	translin-like protein [Arabidopsis thali	1.0	0.261	0.768	5e-29
186506028	308	translin-like protein [Arabidopsis thali	1.0	0.262	0.768	5e-29
297823523	234	predicted protein [Arabidopsis lyrata su	0.962	0.333	0.790	6e-29

>gi|255556962|ref|XP_002519514.1| translin, putative [Ricinus communis] gi|223541377|gb|EEF42928.1| translin, putative [Ricinus communis]

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/82 (79%), Positives = 72/82 (87%), Gaps = 1/82 (1%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
           PRYVVN+V AG+YDCPRKVL+FLTDLHAAFRMLNLRNDFLRKKFD +KYDL+RVEEVYYD
Sbjct: 218 PRYVVNRVTAGDYDCPRKVLKFLTDLHAAFRMLNLRNDFLRKKFDGMKYDLRRVEEVYYD 277

Query: 61  MKIRHLA-NGDSAEDNGTQGQS 81
           +KIR LA NGD   D   +GQS
Sbjct: 278 VKIRGLASNGDLVADQIVEGQS 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481387|ref|XP_002281908.2| PREDICTED: translin [Vitis vinifera]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 73/98 (74%), Gaps = 17/98 (17%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
           PRYVVNQV AG+YDCPRKVL+FLTDLHAAFRMLNLRNDFLRKKFD +KYDL+RVEEVYYD
Sbjct: 215 PRYVVNQVTAGDYDCPRKVLKFLTDLHAAFRMLNLRNDFLRKKFDGMKYDLRRVEEVYYD 274

Query: 61  MKIRHLAN-----------------GDSAEDNGTQGQS 81
           +KIR LA+                 GD A D GT  QS
Sbjct: 275 VKIRGLADKAEEVSYDIKIGGPDDHGDPAGDEGTHKQS 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741623|emb|CBI32755.3| unnamed protein product [Vitis vinifera]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 73/98 (74%), Gaps = 17/98 (17%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
           PRYVVNQV AG+YDCPRKVL+FLTDLHAAFRMLNLRNDFLRKKFD +KYDL+RVEEVYYD
Sbjct: 155 PRYVVNQVTAGDYDCPRKVLKFLTDLHAAFRMLNLRNDFLRKKFDGMKYDLRRVEEVYYD 214

Query: 61  MKIRHLAN-----------------GDSAEDNGTQGQS 81
           +KIR LA+                 GD A D GT  QS
Sbjct: 215 VKIRGLADKAEEVSYDIKIGGPDDHGDPAGDEGTHKQS 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069515|ref|XP_002326362.1| predicted protein [Populus trichocarpa] gi|222833555|gb|EEE72032.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 71/80 (88%), Gaps = 4/80 (5%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
           PRYVVNQV AG+YDCPRKVL+F+TDLHAAFRMLNLRNDFLRKKFD +KYDL+RVEEVYYD
Sbjct: 157 PRYVVNQVTAGDYDCPRKVLKFMTDLHAAFRMLNLRNDFLRKKFDGMKYDLRRVEEVYYD 216

Query: 61  MKIRHL-ANGDSAEDNGTQG 79
           +KIR L A GDS   NG QG
Sbjct: 217 VKIRGLTATGDS---NGNQG 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515527|gb|AFK45825.1| unknown [Lotus japonicus]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 71/80 (88%), Gaps = 1/80 (1%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
           PRYVVNQV AG+YDC RKVL+FLTDLHAAFRMLNLRNDFLRKKFD +KYDL++VEEVYYD
Sbjct: 164 PRYVVNQVTAGDYDCSRKVLKFLTDLHAAFRMLNLRNDFLRKKFDGMKYDLRKVEEVYYD 223

Query: 61  MKIRHL-ANGDSAEDNGTQG 79
           +KIR L +NG+S  D G +G
Sbjct: 224 VKIRGLSSNGESVGDQGIEG 243

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510757|ref|XP_003625667.1| Translin-like protein [Medicago truncatula] gi|355500682|gb|AES81885.1| Translin-like protein [Medicago truncatula]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 71/82 (86%), Gaps = 1/82 (1%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
           PRYVVNQV AG+YDCPR VL+FLT+LHAAFRMLNLRND LR+KFD +KYDL++VEEVYYD
Sbjct: 156 PRYVVNQVTAGDYDCPRNVLKFLTELHAAFRMLNLRNDLLRRKFDGMKYDLRKVEEVYYD 215

Query: 61  MKIRHLA-NGDSAEDNGTQGQS 81
           +KIR L  NG+S  D G +GQS
Sbjct: 216 VKIRGLTPNGESVADQGIKGQS 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14596009|gb|AAK68732.1| translin-like protein [Arabidopsis thaliana] gi|17978801|gb|AAL47394.1| translin-like protein [Arabidopsis thaliana] gi|20197945|gb|AAD31587.2| translin-like protein [Arabidopsis thaliana]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/82 (76%), Positives = 70/82 (85%), Gaps = 1/82 (1%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
           PRYVVN+V AG+YDCPRKV+ FLTDLHAAFRMLNLRNDFLRKKFDS+KYDL+RVEEVYYD
Sbjct: 157 PRYVVNRVTAGDYDCPRKVMNFLTDLHAAFRMLNLRNDFLRKKFDSMKYDLRRVEEVYYD 216

Query: 61  MKIRHL-ANGDSAEDNGTQGQS 81
           +KIR L + GD       QGQS
Sbjct: 217 VKIRGLISGGDPPGVQAVQGQS 238

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184743|ref|NP_001189694.1| translin-like protein [Arabidopsis thaliana] gi|330254242|gb|AEC09336.1| translin-like protein [Arabidopsis thaliana]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/82 (76%), Positives = 70/82 (85%), Gaps = 1/82 (1%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
           PRYVVN+V AG+YDCPRKV+ FLTDLHAAFRMLNLRNDFLRKKFDS+KYDL+RVEEVYYD
Sbjct: 229 PRYVVNRVTAGDYDCPRKVMNFLTDLHAAFRMLNLRNDFLRKKFDSMKYDLRRVEEVYYD 288

Query: 61  MKIRHL-ANGDSAEDNGTQGQS 81
           +KIR L + GD       QGQS
Sbjct: 289 VKIRGLISGGDPPGVQAVQGQS 310

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186506028|ref|NP_565857.2| translin-like protein [Arabidopsis thaliana] gi|330254241|gb|AEC09335.1| translin-like protein [Arabidopsis thaliana]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/82 (76%), Positives = 70/82 (85%), Gaps = 1/82 (1%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
           PRYVVN+V AG+YDCPRKV+ FLTDLHAAFRMLNLRNDFLRKKFDS+KYDL+RVEEVYYD
Sbjct: 227 PRYVVNRVTAGDYDCPRKVMNFLTDLHAAFRMLNLRNDFLRKKFDSMKYDLRRVEEVYYD 286

Query: 61  MKIRHL-ANGDSAEDNGTQGQS 81
           +KIR L + GD       QGQS
Sbjct: 287 VKIRGLISGGDPPGVQAVQGQS 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823523|ref|XP_002879644.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325483|gb|EFH55903.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/81 (79%), Positives = 70/81 (86%), Gaps = 3/81 (3%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
           PRYVVN+V AG+YDCPRKV+ FLTDLHAAFRMLNLRNDFLRKKFDS+KYDL+RVEEVYYD
Sbjct: 157 PRYVVNRVTAGDYDCPRKVMNFLTDLHAAFRMLNLRNDFLRKKFDSMKYDLRRVEEVYYD 216

Query: 61  MKIRHLANGDSAEDNGTQGQS 81
           +KIR L    SA D   QGQS
Sbjct: 217 VKIRGLI---SAGDQEIQGQS 234

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
DICTYBASE|DDB_G0270384	214	tsn "translin" [Dictyostelium	0.802	0.303	0.523	3.7e-16
ZFIN|ZDB-GENE-030131-6039	227	tsn "translin" [Danio rerio (t	0.876	0.312	0.507	2.6e-15
FB|FBgn0033528	235	trsn "translin" [Drosophila me	0.827	0.285	0.507	3.3e-15
UNIPROTKB|F1NT44	229	TSN "Translin" [Gallus gallus	0.802	0.283	0.523	6.9e-15
UNIPROTKB|P79769	229	TSN "Translin" [Gallus gallus	0.802	0.283	0.523	6.9e-15
UNIPROTKB|Q08DM8	228	TSN "Translin" [Bos taurus (ta	0.777	0.276	0.539	3e-14
UNIPROTKB|F1PFI5	242	TSN "Uncharacterized protein"	0.777	0.260	0.539	3e-14
UNIPROTKB|E9PGT1	223	TSN "Translin" [Homo sapiens (	0.777	0.282	0.539	3e-14
UNIPROTKB|Q15631	228	TSN "Translin" [Homo sapiens (	0.777	0.276	0.539	3e-14
MGI|MGI:109263	228	Tsn "translin" [Mus musculus (	0.777	0.276	0.539	3e-14

DICTYBASE|DDB_G0270384 tsn "translin" [Dictyostelium discoideum (taxid:44689)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 34/65 (52%), Positives = 52/65 (80%)

Query:     2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
             RY +N V+  +Y+ P  + +F++DL A FR+LNL+ND +RK++DS+KYDLKR+EEV YD+
Sbjct:   147 RYCLNCVIKQDYETPSLISKFISDLFAGFRLLNLKNDIIRKRYDSMKYDLKRIEEVVYDI 206

Query:    62 KIRHL 66
              +R+L
Sbjct:   207 SVRNL 211

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-030131-6039 tsn "translin" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 36/71 (50%), Positives = 50/71 (70%)

Query:     2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
             R  VN V AG+Y  P ++  F+ +L + FR+LNL+ND LRK++D LKYD+K++EEV YD+
Sbjct:   153 RLAVNSVTAGDYGRPLRISNFINELDSGFRLLNLKNDPLRKRYDGLKYDVKKIEEVVYDL 212

Query:    62 KIRHLANGDSA 72
              IR LA    A
Sbjct:   213 SIRGLAKEQEA 223

GO:0043565 "sequence-specific DNA binding" evidence=IEA

FB|FBgn0033528 trsn "translin" [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 34/67 (50%), Positives = 50/67 (74%)

Query:     2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
             R+  N V  G+Y+ P  +  F+ DL+  FR+LNL+ND LRK+FD+LKYD+K++EEV YD+
Sbjct:   154 RFATNSVTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDV 213

Query:    62 KIRHLAN 68
              IR L++
Sbjct:   214 SIRGLSS 220

GO:0005634 "nucleus" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0050821 "protein stabilization" evidence=IMP

GO:0007630 "jump response" evidence=IMP

GO:0004521 "endoribonuclease activity" evidence=IDA

GO:0016246 "RNA interference" evidence=IMP

UNIPROTKB|F1NT44 TSN "Translin" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 34/65 (52%), Positives = 48/65 (73%)

Query:     2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
             R  VN V AG+Y  P ++  F+ +L + FR+LNL+ND LRK++D LKYD+K++EEV YD+
Sbjct:   153 RLAVNSVTAGDYSRPLRISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKIEEVVYDL 212

Query:    62 KIRHL 66
              IR L
Sbjct:   213 SIRGL 217

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P79769 TSN "Translin" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 34/65 (52%), Positives = 48/65 (73%)

Query:     2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
             R  VN V AG+Y  P ++  F+ +L + FR+LNL+ND LRK++D LKYD+K++EEV YD+
Sbjct:   153 RLAVNSVTAGDYSRPLRISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKIEEVVYDL 212

Query:    62 KIRHL 66
              IR L
Sbjct:   213 SIRGL 217

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q08DM8 TSN "Translin" [Bos taurus (taxid:9913)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 34/63 (53%), Positives = 46/63 (73%)

Query:     2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
             R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD+
Sbjct:   153 RLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 212

Query:    62 KIR 64
              IR
Sbjct:   213 SIR 215

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|F1PFI5 TSN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 34/63 (53%), Positives = 46/63 (73%)

Query:     2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
             R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD+
Sbjct:   168 RLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 227

Query:    62 KIR 64
              IR
Sbjct:   228 SIR 230

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|E9PGT1 TSN "Translin" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 34/63 (53%), Positives = 46/63 (73%)

Query:     2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
             R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD+
Sbjct:   148 RLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 207

Query:    62 KIR 64
              IR
Sbjct:   208 SIR 210

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q15631 TSN "Translin" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 34/63 (53%), Positives = 46/63 (73%)

Query:     2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
             R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD+
Sbjct:   153 RLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 212

Query:    62 KIR 64
              IR
Sbjct:   213 SIR 215

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0006310 "DNA recombination" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:109263 Tsn "translin" [Mus musculus (taxid:10090)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 34/63 (53%), Positives = 46/63 (73%)

Query:     2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
             R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD+
Sbjct:   153 RLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 212

Query:    62 KIR 64
              IR
Sbjct:   213 SIR 215

GO:0003677 "DNA binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=ISO

GO:0003723 "RNA binding" evidence=IDA

GO:0003729 "mRNA binding" evidence=IDA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0090305 "nucleic acid phosphodiester bond hydrolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	81
pfam01997	187	pfam01997, Translin, Translin family	2e-26

>gnl|CDD|202084 pfam01997, Translin, Translin family

 Score = 95.0 bits (237), Expect = 2e-26
 Identities = 34/63 (53%), Positives = 48/63 (76%)

Query: 2   RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
           RY +N V  G+Y+ P ++L F+ DL+A FR+LNL+ND LRKK D L+Y L++VEEV YD+
Sbjct: 123 RYALNSVTLGDYERPLEILEFMEDLYAGFRLLNLKNDGLRKKLDVLRYSLEKVEEVVYDL 182

Query: 62  KIR 64
            +R
Sbjct: 183 SVR 185

Members of this family include Translin that interacts with DNA and forms a ring around the DNA. This family also includes human translin-associated protein X, which was found to interact with translin with yeast two-hybrid screen. Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
KOG3067	226	consensus Translin family protein [General functio	99.95
PF01997	200	Translin: Translin family; InterPro: IPR002848 Tra	99.91
PRK14562	204	haloacid dehalogenase superfamily protein; Provisi	99.65
KOG3066	271	consensus Translin-associated protein X [General f	99.63
COG2178	204	Predicted RNA-binding protein of the translin fami	95.7
PF11473	73	B2: RNA binding protein B2; InterPro: IPR024377 Pr	81.94

>KOG3067 consensus Translin family protein [General function prediction only]

Probab=99.95  E-value=1.6e-29  Score=186.30  Aligned_cols=70  Identities=59%  Similarity=0.930  Sum_probs=67.5

Q ss_pred             CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhheeEeecccCCC
Q 047968            1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGD   70 (81)
Q Consensus         1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL~lRg~~~~~   70 (81)
                      +|+++|+||.|||++|+.++.|+.++|++|++||||||.||||||+|||||||+|+|+||++|||+...+
T Consensus       151 sR~svNsVtaGdY~~Pl~v~~fi~dlhs~FrlLnLKndsLRK~fDgLkYDlkrvEeVvYDv~Irgl~~ep  220 (226)
T KOG3067|consen  151 SRQSVNSVTAGDYHRPLHVSNFINDLHSGFRLLNLKNDSLRKRFDGLKYDLKRVEEVVYDVSIRGLVDEP  220 (226)
T ss_pred             HHhhhccccccCcCCchHHHHHHhhhcccceeeeccchhhhccccchhhhHHhhhhhheeeeeecccCCc
Confidence            6999999999999999999999999999999999999999999999999999999999999999998433

>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments

Probab=99.91  E-value=1.6e-25  Score=160.34  Aligned_cols=66  Identities=53%  Similarity=0.932  Sum_probs=62.9

Q ss_pred             CceeeeecccCCchhHHHHHHHHHHHHHHHHhccc-----CChHHHHHHHHHHHHHHHHHhhhheeEeecc
Q 047968            1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNL-----RNDFLRKKFDSLKYDLKRVEEVYYDMKIRHL   66 (81)
Q Consensus         1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnl-----kn~~LrkK~d~lKyslkKvE~v~YdL~lRg~   66 (81)
                      +|||||+|+.||++.|++|++||++||.+|..||+     +|++||||+|+|||+|+|+|++||+++|||+
T Consensus       130 ~R~ai~~v~~gd~~~~~~i~~f~~~l~~~~~~l~~~~~~~~n~~LrkK~d~~k~~l~KvE~~~y~l~vRgs  200 (200)
T PF01997_consen  130 MRYAINSVTKGDYERPEKILEFMRELYSGFQLLNLPDAIVKNDELRKKFDVLKYSLKKVEEVVYDLSVRGS  200 (200)
T ss_dssp             HHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHTSGGTTGS--SHHHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcchhhcccchhHHHHHHHHHHHHHHHHHHhHhhhhcCC
Confidence            59999999999999999999999999999999999     9999999999999999999999999999996

They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.

>PRK14562 haloacid dehalogenase superfamily protein; Provisional

Probab=99.65  E-value=3.4e-17  Score=118.85  Aligned_cols=68  Identities=19%  Similarity=0.281  Sum_probs=62.8

Q ss_pred             CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCCh---HHHHHHHHHHHHHHHH-HhhhheeEeecccC
Q 047968            1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRND---FLRKKFDSLKYDLKRV-EEVYYDMKIRHLAN   68 (81)
Q Consensus         1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~---~LrkK~d~lKyslkKv-E~v~YdL~lRg~~~   68 (81)
                      +|+|+|+++.||++.|.+|++||++||++|..||++|+   +||||+|++||+|+|+ ++++|.+..++++.
T Consensus       126 ~R~al~~l~~gd~~~~~~i~~fm~~ly~~~~~l~~~~~~~~~LRkK~D~~r~~lekt~~d~~~~~~~~~l~~  197 (204)
T PRK14562        126 RRHILELLRKGEIEEAEKLLEIMEEIYEFLMTLDYPDAITPGLRRKQDVARSLLERTRGDLTNAILNRKLEE  197 (204)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999998   9999999999999999 66888877766553

>KOG3066 consensus Translin-associated protein X [General function prediction only]

Probab=99.63  E-value=1.5e-16  Score=119.99  Aligned_cols=70  Identities=17%  Similarity=0.263  Sum_probs=65.6

Q ss_pred             CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccC---ChHHHHHHHHHHHHHHHHHhhhheeEeecccCCC
Q 047968            1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLR---NDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGD   70 (81)
Q Consensus         1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlk---n~~LrkK~d~lKyslkKvE~v~YdL~lRg~~~~~   70 (81)
                      +|+|||+++.|+++.|+++|+|+|+||.+|.....+   ..+|.+|+.+|+||+.|||++||.+.|||++..+
T Consensus       181 MRm~I~~~s~g~I~~~~~~~qFlRq~h~~~s~i~~~~~~~ye~~~Kl~vm~qSi~KvEnaCys~~vRg~e~~~  253 (271)
T KOG3066|consen  181 MRMLITNGSKGSIQQLTQQVQFLRQLHKNCSEIEHLPSKKYELQQKLSVMEQSISKVENACYSKIVRGAEKRY  253 (271)
T ss_pred             HHHHHhcCcCcchhhHHHHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHHHHhHHHHHHhccccccc
Confidence            599999999999999999999999999999999665   4789999999999999999999999999999653

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=95.70  E-value=0.016  Score=43.20  Aligned_cols=55  Identities=20%  Similarity=0.344  Sum_probs=48.8

Q ss_pred             ceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCC---hHHHHHHHHHHHHHHHHHh
Q 047968            2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRN---DFLRKKFDSLKYDLKRVEE   56 (81)
Q Consensus         2 R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn---~~LrkK~d~lKyslkKvE~   56 (81)
                      |+++..+..|+++.+.+..+|+.+||.....|+..-   +.||+|.|...+.+.|...
T Consensus       126 R~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~~l~~~LR~K~Dvar~~lekt~~  183 (204)
T COG2178         126 RHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPKALVPGLRQKQDVARSLLEKTKS  183 (204)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHH
Confidence            566677789999999999999999999999997752   6899999999999999875

>PF11473 B2: RNA binding protein B2; InterPro: IPR024377 Protein B2 binds double-strand RNA (dsRNA) with high affinity and suppresses the host RNA silencing-based antiviral response

Probab=81.94  E-value=2  Score=27.47  Aligned_cols=46  Identities=15%  Similarity=0.216  Sum_probs=33.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhhee
Q 047968           14 DCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM   61 (81)
Q Consensus        14 ~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL   61 (81)
                      +.|.+|+.-|+.+.+.--.-.  ....+|-+|.+|-.|.|+|.+|+..
T Consensus        10 ~lp~~iq~aV~~~~~~~~~~~--p~~V~kDLdn~kaCL~K~e~T~~r~   55 (73)
T PF11473_consen   10 ELPDRIQQAVEAAIDMSYQCA--PNNVRKDLDNYKACLNKAEATVFRA   55 (73)
T ss_dssp             CHHHHHHHHHHHHHCS-GTTS---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcccC--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788888887754322111  2468999999999999999999854

B2 is expressed by the insect Flock House virus (FHV) as a counter-defense mechanism against antiviral RNA silencing during infection. In vitro, B2 binds to dsRNA as a dimer and inhibits the cleavage of it by Dicer. B2 blocks cleavage of the FHV genome by Dicer and also the incorporation of FHV small interfering RNAs into the RNA-induced silencing complex [].; PDB: 2AZ2_A 2B9Z_A 2AZ0_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	81
4dg7_A	255	Low Resolution Structure Of Drosophila Translin Len		1e-15
3axj_A	249	High Resolution Crystal Structure Of C3po Length =		1e-15
3riu_A	218	Crystal Structure Of Drosophila Hexameric C3po Form		4e-15
2qrx_A	235	Crystal Structure Of Drosophila Melanogaster Transl		1e-14
1key_A	235	Crystal Structure Of Mouse TestisBRAIN RNA-Binding		1e-14
2qva_A	247	Crystal Structure Of Drosophila Melanogaster Transl		1e-14
1j1j_A	240	Crystal Structure Of Human Translin Length = 240		1e-14
3pja_A	228	Crystal Structure Of Human C3po Complex Length = 22		2e-14

>pdb|4DG7|A Chain A, Low Resolution Structure Of Drosophila Translin Length = 255

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 50/67 (74%)
Query: 2   RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
           R+  N V  G+Y+ P  +  F+ DL+  FR+LNL+ND LRK+FD+LKYD+K++EEV YD+
Sbjct: 174 RFATNSVTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDV 233
Query: 62  KIRHLAN 68
            IR L++
Sbjct: 234 SIRGLSS 240

>pdb|3AXJ|A Chain A, High Resolution Crystal Structure Of C3po Length = 249

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 50/67 (74%)
Query: 2   RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
           R+  N V  G+Y+ P  +  F+ DL+  FR+LNL+ND LRK+FD+LKYD+K++EEV YD+
Sbjct: 168 RFATNSVTXGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDV 227
Query: 62  KIRHLAN 68
            IR L++
Sbjct: 228 SIRGLSS 234

>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By Truncated Translin And Trax Length = 218

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 47/64 (73%)
Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
            R+  N V  G+Y+ P  +  F+ DL+  FR+LNL+ND LRK+FD+LKYD+K++EEV YD
Sbjct: 154 SRFATNSVTXGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYD 213
Query: 61  MKIR 64
           + IR
Sbjct: 214 VSIR 217

>pdb|2QRX|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin Protein Length = 235

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 50/70 (71%)
Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
            R+  N V  G+Y+    +  F+ DL+  FR+LNL+ND LRK+FD+LKYD+K++EEV YD
Sbjct: 153 SRFATNSVTMGDYERSLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYD 212
Query: 61  MKIRHLANGD 70
           + IR L++ +
Sbjct: 213 VSIRGLSSKE 222

>pdb|1KEY|A Chain A, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein (Tb-Rbp) Length = 235

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 2   RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
           R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD+
Sbjct: 160 RLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 219
Query: 62  KIRHLANGDSAEDNG 76
            IR   N ++A   G
Sbjct: 220 SIRGF-NKETAAACG 233

>pdb|2QVA|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin Protein Length = 247

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 49/67 (73%)
Query: 2   RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
           R+  N V  G+Y+    +  F+ DL+  FR+LNL+ND LRK+FD+LKYD+K++EEV YD+
Sbjct: 166 RFATNSVTMGDYERSLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDV 225
Query: 62  KIRHLAN 68
            IR L++
Sbjct: 226 SIRGLSS 232

>pdb|1J1J|A Chain A, Crystal Structure Of Human Translin Length = 240

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
            R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD
Sbjct: 164 SRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYD 223
Query: 61  MKIR 64
           + IR
Sbjct: 224 LSIR 227

>pdb|3PJA|A Chain A, Crystal Structure Of Human C3po Complex Length = 228

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 46/63 (73%)
Query: 2   RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
           R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD+
Sbjct: 153 RLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 212
Query: 62  KIR 64
            IR
Sbjct: 213 SIR 215

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	81
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	2e-22
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	2e-22
3qb5_K	290	Translin-associated protein X; alpha helical bundl	7e-20
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	7e-18

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A Length = 249

 Score = 85.5 bits (211), Expect = 2e-22
 Identities = 34/77 (44%), Positives = 52/77 (67%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
            R+  N V  G+Y+ P  +  F+ DL+  FR+LNL+ND LRK+FD+LKYD+K++EEV YD
Sbjct: 167 SRFATNSVTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYD 226

Query: 61  MKIRHLANGDSAEDNGT 77
           + IR L++ +  +    
Sbjct: 227 VSIRGLSSKEKDQQEEP 243

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A Length = 240

 Score = 85.1 bits (210), Expect = 2e-22
 Identities = 34/64 (53%), Positives = 46/64 (71%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
            R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD
Sbjct: 164 SRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYD 223

Query: 61  MKIR 64
           + IR
Sbjct: 224 LSIR 227

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J Length = 290

 Score = 79.4 bits (195), Expect = 7e-20
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRML-NLRNDFLRKKFDSLKYDLKRVEEVYY 59
            R  +N V  G+ D P +V +FL  ++  F  + N     + KK  +LK  L +VE   Y
Sbjct: 199 MRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACY 258

Query: 60  DMKIR 64
            +K+R
Sbjct: 259 ALKVR 263

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C Length = 298

 Score = 74.2 bits (181), Expect = 7e-18
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNL-RNDFLRKKFDSLKYDLKRVEEVYY 59
            R  +N + +G+ D      + L   ++ +  LN  R   L +K  ++K  + + E V Y
Sbjct: 210 MRRCINSLGSGDTDTCLDTCKALQHFYSGYISLNCQRARELWRKITTMKQSVLKAENVCY 269

Query: 60  DMKIR 64
           ++K+R
Sbjct: 270 NVKVR 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	99.95
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	99.94
3qb5_K	290	Translin-associated protein X; alpha helical bundl	99.94
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	99.94
3g80_A	97	Protein B2; RNA-binding, viral protein, suppressor	84.19

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A

Probab=99.95  E-value=1.6e-29  Score=185.61  Aligned_cols=73  Identities=48%  Similarity=0.842  Sum_probs=65.4

Q ss_pred             CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhheeEeecccCCCCCC
Q 047968            1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGDSAE   73 (81)
Q Consensus         1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL~lRg~~~~~~~~   73 (81)
                      +|||||+|+.||+++|++|++||++||++|+.||++|++||||+|+|||+|+|||+|||+|+|||++|.++.+
T Consensus       164 ~R~avn~v~~Gd~~~~~~i~~fm~~Ly~~f~~Lnl~n~~LRkK~D~lk~~vkKvE~v~Ydl~vRg~~~~~~~~  236 (240)
T 1j1j_A          164 SRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKETAAA  236 (240)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTHHHHHHHHHHHHHHHHTTTC-------
T ss_pred             HHHHHHHHhcCChHhHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHheecCCCCCCCCC
Confidence            5999999999999999999999999999999999999999999999999999999999999999998865443

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A

Probab=99.94  E-value=2.2e-28  Score=180.63  Aligned_cols=74  Identities=46%  Similarity=0.862  Sum_probs=67.7

Q ss_pred             CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhheeEeecccCCCCCCC
Q 047968            1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGDSAED   74 (81)
Q Consensus         1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL~lRg~~~~~~~~~   74 (81)
                      +|||||+|+.||++.|++||+||++||++|+.||++|++||||+|+|||+|+|||+|||+|+|||+.|.+.+.+
T Consensus       167 ~R~ain~v~~Gd~~~~~~i~~fm~~Ly~~f~~Ln~~n~~LRkK~D~lk~sv~KvE~v~Ydl~vRg~~~~~~~~~  240 (249)
T 3axj_A          167 SRFATNSVTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDVSIRGLSSKEKDQQ  240 (249)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccC
Confidence            59999999999999999999999999999999999999999999999999999999999999999987765443

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J

Probab=99.94  E-value=3.8e-28  Score=182.53  Aligned_cols=70  Identities=29%  Similarity=0.414  Sum_probs=67.1

Q ss_pred             CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCCh-HHHHHHHHHHHHHHHHHhhhheeEeecccCCC
Q 047968            1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRND-FLRKKFDSLKYDLKRVEEVYYDMKIRHLANGD   70 (81)
Q Consensus         1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~-~LrkK~d~lKyslkKvE~v~YdL~lRg~~~~~   70 (81)
                      +|||||+|+.||+++|++||+||++||++|+.||++|+ +||||+|+|||||+|||+|||+|+|||+|..+
T Consensus       199 mR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L~~~~~~~LrKK~d~lk~svkKvE~v~Ydl~vRg~e~pk  269 (290)
T 3qb5_K          199 MRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPK  269 (290)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhhheeeecCCCCc
Confidence            59999999999999999999999999999999999997 99999999999999999999999999997543

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C

Probab=99.94  E-value=3.2e-28  Score=183.61  Aligned_cols=69  Identities=22%  Similarity=0.314  Sum_probs=67.1

Q ss_pred             CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHHhhhheeEeecccCC
Q 047968            1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVEEVYYDMKIRHLANG   69 (81)
Q Consensus         1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE~v~YdL~lRg~~~~   69 (81)
                      +|||||+|+.||+++|++||.||++||++|+.||++| ++||||+|+|||||+|||+|||+|+|||++..
T Consensus       210 mR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~Lnlkn~~~LRKK~D~lk~svkKvE~v~Ydl~vRg~e~~  279 (298)
T 3axj_B          210 MRRCINSLGSGDTDTCLDTCKALQHFYSGYISLNCQRARELWRKITTMKQSVLKAENVCYNVKVRGGEAA  279 (298)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHhccchHhHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHheecCCCcc
Confidence            5999999999999999999999999999999999999 99999999999999999999999999999853

>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}

Probab=84.19  E-value=4.3  Score=26.24  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhhee
Q 047968           14 DCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM   61 (81)
Q Consensus        14 ~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL   61 (81)
                      +.|-.|.+........-..|-...+..+|-+|.++--|.|.|..||..
T Consensus        32 ~lP~~l~qv~q~~v~ai~sl~~qDpnV~kDLdn~~acL~k~~~t~~ra   79 (97)
T 3g80_A           32 SLPAKLEQLAQETQATIQTLMIADPNVNKDLRAFCEFLTVQHQRAYRA   79 (97)
T ss_dssp             THHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888888888888888777889999999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	81
d1j1ja_	217	a.118.16.1 (A:) Translin {Human (Homo sapiens) [Ta	1e-24

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (221), Expect = 1e-24
 Identities = 34/66 (51%), Positives = 46/66 (69%)

Query: 1   PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
            R  VN V AG+Y  P  +  F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD
Sbjct: 152 SRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYD 211

Query: 61  MKIRHL 66
           + IR  
Sbjct: 212 LSIRGF 217

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d1j1ja_	217	Translin {Human (Homo sapiens) [TaxId: 9606]}	99.93

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.2e-28  Score=171.01  Aligned_cols=66  Identities=52%  Similarity=0.915  Sum_probs=64.9

Q ss_pred             CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhheeEeecc
Q 047968            1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHL   66 (81)
Q Consensus         1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL~lRg~   66 (81)
                      +|+|||+++.||++.|.+||+||++||++|+.||++|++||||+|+|||||+|||++||||+|||+
T Consensus       152 ~R~ain~v~~gd~~~~~~i~~f~~~l~~~f~~l~~~~~~LrkK~d~~k~sl~KvE~~~Ydl~vRGl  217 (217)
T d1j1ja_         152 SRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGF  217 (217)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            599999999999999999999999999999999999999999999999999999999999999996