Citrus Sinensis ID: 047985

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930
Protein Sequence
MLWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISEAPTNEDQIEDSEESLLSGVSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFVFSLIFFNFTIANFTSSMLSPLCHGYERSALLQFKESLTIIRKTSYYIWDPCHPKTASWKPEEANIDCCSQWRTQKLK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccEEEcccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccHHHHHcccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccHHccccccccEEEccccccEEEEcccccccccccccEEEccccEEEEEcccccccccccccEEEEcccccccccHHHcccccccEEEcccccccccccHHHHccccccccEEEccccccccccccccccEEEEEccccEEEccHHHHHccccccEEEccccccccccccHHHHccccccEEEccccccEEEccccccccccccEEEccccEEcccccHHHHHcccccEEEcccccccccccHHccccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEEccccccccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcEEEEEEEHHHHcccccHHHHHHHHHHccccEEccccccccccccccccccEEEEEEEEEEccccccccccccccccccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEccccccEEEcccccHHcccccccEEEccccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEccccccccccccccccHHHHHHHcccccEEEcccccccccccHHHHHcccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHccccccEEEccccccccccccHccccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHHccccccHHHHccccccccccccccccEEEEEccccccccccHHHHccccccEEEEcccccccccccHHHHcHHcHcEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccccEEEEEcccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHcccccccccccccccccccEEEHHHEEccccccHHHHcccccEEEEEcccccccccccHHHHcHHHHcEEEccccccccccccHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccHccHHHHHHHHHHccccEEccccccccccccccccccEcccccccccccccccHccc
Coil and Loop (DISEMBL)
mlwplchgderSALLQFKESLIISEskeidtlygpifchpkaaswkpeegnnidccswdgvqcnentghvikldlsssclqgsinssssLFKLVHLEWLdlafndfdgseippeiiNLSSlsylnlssaafsgqipSEILELSKLAYldlshnsyydpvelrkpslgnlADKLTNlkelvlgdvtisspiphnltylsslttlslsgcdlrgripsslgnITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQnnlsgelpnsignlASLEQVDLSLNRFLgkvpsslgnltqlHWLSLasndfsgelpasfgnlrslrtldvyeckfsgqipsslsnlthlsfldfslnnfsgkmdldiFLVNHKLLYHLFLSTNRLSLLTkatsnttshrfravslcscdlteipkflknqHHLELLDLASnkingkvpkwlldpsmqnfghlnlshnfltgfdqhpntvnylvsnnsltgeipSWICNLSNRLESLDLsynnlsgllpqclgnfSDWLSILDLQhnkfsgtipdnllkgniLKVIdlsdnllqgriprslancsnlefldlgdnqirdifpswlgtlpdlnvlilksnkfhglirepktdcgfpklrIIDLsknrftgklpsmAFQCWNAMKVVNASELRYMQevipfnegngiydysltmsnkgqmmsykkIPDILTAVILssnrfdgeiptsisnlkglqilsladnslhghipsclgnltdlesldlsnnrfsgqipqQLVELTFLEffnvsdnhftgpipqgkqfatfdktsfdgnsglcgrplsseceiseaptnedqieDSEESLLSGVSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFVFSLIFFNFTIAnftssmlsplchgyerSALLQFKESLTIirktsyyiwdpchpktaswkpeeanidcCSQWRTQKLK
Flexible Loop (DISEMBL)
mlwplchgdeRSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIpsslsnltHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKatsnttshrfRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFhglirepktdcgfpkLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISeaptnedqieDSEESLLSGVSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFVFSLIFFNFTIANFTSSMLSPLCHGYERSALLQFKESLTIIRKTSYYIWDPCHpktaswkpeeanIDCCSQWRTQKLK
Low Complexity Region (SEG)
MLWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIInlsslsylnlssAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNltylsslttlslsGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISEAPTNEDQIEDSEESLLSGVSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFVFSLIFFNFTIANFTSSMLSPLCHGYERSALLQFKESLTIIRKTSYYIWDPCHPKTASWKPEEANIDCCSQWRTQKLK
Disordered region (IsUnstruct)
**WPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDL***************FKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDK*************************************LSGVSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFVFSLIFFNFTIANFTSSMLSPLCHGYERSALLQFKESLTIIRKTSYYIWDPCHPKTASWKPEEANIDCCSQW******
Disordered Region (DISOPRED)
M*WPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNA*************EVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPL**************************VSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFVFSLIFFNFTIANFTSSMLSPLCHGYERSALLQFKESLTIIRKTSYYIWDPCHPKTASWKPEEANIDCCSQWRTQK**
Disordered Region (DISEMBL)
MLWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECE******************LSGVSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFVFSLIFFNFTIANFTSSMLSPLCHGYERSALLQFKESLTIIRKTSYYIWDPCHPKTASWKPEEANIDCCSQWRTQKLK
Disordered Region (DISPRO)
*LWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECE*******************SGVSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFVFSLIFFNFTIANFTSSMLSPLCHGYERSALLQFKESLTIIRKTSYYIWDPCHPKTASWK*****IDCCSQWRT*KLK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISEAPTNEDQIEDSEESLLSGVSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFVFSLIFFNFTIANFTSSMLSPLCHGYERSALLQFKESLTIIRKTSYYIWDPCHPKTASWKPEEANIDCCSQWRTQKLK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	930	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.808	0.887	0.342	1e-119
Q9FL28	1173	LRR receptor-like serine/	no	no	0.748	0.593	0.319	8e-81
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.746	0.629	0.330	1e-76
Q9LP24	1120	Probable leucine-rich rep	no	no	0.717	0.595	0.315	1e-73
O49318	1124	Probable leucine-rich rep	no	no	0.708	0.586	0.322	6e-73
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.724	0.539	0.327	1e-69
P93194	1109	Receptor-like protein kin	N/A	no	0.667	0.559	0.311	8e-66
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.705	0.523	0.299	3e-64
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.689	0.589	0.317	1e-63
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.660	0.515	0.304	8e-63

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 296/864 (34%), Positives = 443/864 (51%), Gaps = 112/864 (12%)

Query: 5   LCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCN 64
            C  D+R ALL+F+    I+ S  I               W+     + DCC W+GV CN
Sbjct: 33  FCRDDQRDALLEFRGEFPINASWHI------------MNQWRGPWNKSTDCCLWNGVTCN 80

Query: 65  ENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYL 124
           + +G VI LD+ ++ L   + ++SSLFKL +L  LDL                       
Sbjct: 81  DKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDL----------------------- 117

Query: 125 NLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDV 184
             ++    G+IPS +  LS L  ++L  N +   +     S+GNL      L+ L+L + 
Sbjct: 118 --TNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEI---PASIGNL----NQLRHLILANN 168

Query: 185 TISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGT 244
                                    L G IPSSLGN++RL++L+L  N+L  ++P  IG 
Sbjct: 169 V------------------------LTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGD 204

Query: 245 LGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASN 304
           L  L+ L L  NNL GE+P+S+GNL++L  + L+ N+ +G+VP+S+GNL +L  +S  +N
Sbjct: 205 LKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENN 264

Query: 305 DFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFL 364
             SG +P SF NL  L    +    F+   P  +S   +L + D S N+FSG     + L
Sbjct: 265 SLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLL 324

Query: 365 VNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL-TEIPKFLKNQHHLELLDL 423
           +    L  ++L  N+ +   +  + ++S + + + L    L   IP+ +    +LE LD+
Sbjct: 325 I--PSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDI 382

Query: 424 ASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG------------------FDQHPNT-- 463
           + N   G +P  +    + N  HL+LS N L G                  F    NT  
Sbjct: 383 SHNNFTGAIPPTI--SKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQ 440

Query: 464 ----VNYL-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDL 518
               +  L +++NS  G IP  IC LS+ L  LDLS N  SG +P C+ NFS  +  L+L
Sbjct: 441 EEALIEELDLNSNSFQGPIPYMICKLSS-LGFLDLSNNLFSGSIPSCIRNFSGSIKELNL 499

Query: 519 QHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSW 578
             N FSGT+PD   K   L  +D+S N L+G+ P+SL NC  LE +++  N+I+DIFPSW
Sbjct: 500 GDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSW 559

Query: 579 LGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKV 638
           L +LP L+VL L+SNKF+G +       GF  LRIID+S N F+G LP   F  W  M  
Sbjct: 560 LESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTT 619

Query: 639 VNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPT 698
           +     +YM E   + +    Y + + M NKG  MS+++I     A+  S N+ +G IP 
Sbjct: 620 LTEEMDQYMTEFWRYADS---YYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPE 676

Query: 699 SISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFN 758
           S+  LK L++L+L+ N+    IP  L NLT LE+LD+S N+ SGQIPQ L  L+FL + N
Sbjct: 677 SLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMN 736

Query: 759 VSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISEA--PTNE--DQIEDSEE 814
            S N   GP+P+G QF     +SF  N GL G  L   C  + A  PT++  + + ++EE
Sbjct: 737 FSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEE 794

Query: 815 SLLSGVSDWKIILIGYAGGLIVGV 838
           ++     +W    I Y  G++ G+
Sbjct: 795 NMF----NWVAAAIAYGPGVLCGL 814

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  302 bits (773), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 251/786 (31%), Positives = 382/786 (48%), Gaps = 90/786 (11%)

Query: 56  CSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEI 115
           C+W G+ C ++TGHV+ + L    L+G +  S ++  L +L+ LDL  N F G +IP EI
Sbjct: 61  CNWTGITC-DSTGHVVSVSLLEKQLEGVL--SPAIANLTYLQVLDLTSNSFTG-KIPAEI 116

Query: 116 INLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHN--SYYDPVELRKPS-------- 165
             L+ L+ L L    FSG IPS I EL  + YLDL +N  S   P E+ K S        
Sbjct: 117 GKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFD 176

Query: 166 LGNLADK-------LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSL 218
             NL  K       L +L+  V     ++  IP ++  L++LT L LSG  L G+IP   
Sbjct: 177 YNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDF 236

Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
           GN+  L  L L+ N L  ++P  IG   SL +L+L  N L+G++P  +GNL  L+ + + 
Sbjct: 237 GNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIY 296

Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSL 338
            N+    +PSSL  LTQL  L L+ N   G +    G L SL  L ++   F+G+ P S+
Sbjct: 297 KNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSI 356

Query: 339 SNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAV 398
           +NL +L+ L    NN SG++  D+ L+ +  L +L    N L+                 
Sbjct: 357 TNLRNLTVLTVGFNNISGELPADLGLLTN--LRNLSAHDNLLT----------------- 397

Query: 399 SLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLS-----HNF 453
                    IP  + N   L+LLDL+ N++ G++P+         FG +NL+      N 
Sbjct: 398 -------GPIPSSISNCTGLKLLDLSHNQMTGEIPR--------GFGRMNLTFISIGRNH 442

Query: 454 LTGFDQHPNTV-------NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCL 506
            TG  + P+ +          V++N+LTG +   I  L  +L  L +SYN+L+G +P+ +
Sbjct: 443 FTG--EIPDDIFNCSNLETLSVADNNLTGTLKPLIGKL-QKLRILQVSYNSLTGPIPREI 499

Query: 507 GNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDL 566
           GN  D L+IL L  N F+G IP  +    +L+ + +  N L+G IP  + +   L  LDL
Sbjct: 500 GNLKD-LNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDL 558

Query: 567 GDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLP 626
            +N+     P+    L  L  L L+ NKF+G I  P +      L   D+S N  TG +P
Sbjct: 559 SNNKFSGQIPALFSKLESLTYLSLQGNKFNGSI--PASLKSLSLLNTFDISDNLLTGTIP 616

Query: 627 SMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTA-- 684
                    M++        +   IP   G       + +SN    +    IP  L A  
Sbjct: 617 GELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNN---LFSGSIPRSLQACK 673

Query: 685 ----VILSSNRFDGEIPTSISNLKGLQI---LSLADNSLHGHIPSCLGNLTDLESLDLSN 737
               +  S N   G IP  +   +G+ +   L+L+ NS  G IP   GN+T L SLDLS+
Sbjct: 674 NVFTLDFSQNNLSGHIPDEV--FQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSS 731

Query: 738 NRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCG--RPLSS 795
           N  +G+IP+ L  L+ L+   ++ N+  G +P+   F   + +   GN+ LCG  +PL  
Sbjct: 732 NNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKP 791

Query: 796 ECEISE 801
            C I +
Sbjct: 792 -CTIKQ 796

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  288 bits (738), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 266/806 (33%), Positives = 373/806 (46%), Gaps = 112/806 (13%)

Query: 56  CSWDGVQCNENTG--HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPP 113
           C W GV C+  +    V+ L+LSS  L G +  S S+  LVHL+ LDL++N   G +IP 
Sbjct: 59  CGWTGVMCSNYSSDPEVLSLNLSSMVLSGKL--SPSIGGLVHLKQLDLSYNGLSG-KIPK 115

Query: 114 EIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL 173
           EI N SSL  L L++  F G+IP EI                                KL
Sbjct: 116 EIGNCSSLEILKLNNNQFDGEIPVEI-------------------------------GKL 144

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
            +L+ L++ +  IS  +P  +  L SL+ L     ++ G++P S+GN+ RL       N 
Sbjct: 145 VSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNM 204

Query: 234 LSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL 293
           +S  LP+ IG   SL  L L QN LSGELP  IG L  L QV L  N F G +P  + N 
Sbjct: 205 ISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNC 264

Query: 294 TQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNN 353
           T L  L+L  N   G +P   G+L+SL  L +Y    +G IP  + NL++   +DFS N 
Sbjct: 265 TSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENA 324

Query: 354 FSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLK 413
            +G++ L+  L N + L  L+L  N+L+                          IP  L 
Sbjct: 325 LTGEIPLE--LGNIEGLELLYLFENQLT------------------------GTIPVELS 358

Query: 414 NQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYL------ 467
              +L  LDL+ N + G +P  L    ++    L L  N L+G    P  + +       
Sbjct: 359 TLKNLSKLDLSINALTGPIP--LGFQYLRGLFMLQLFQNSLSG--TIPPKLGWYSDLWVL 414

Query: 468 -VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGT 526
            +S+N L+G IPS++C  SN +  L+L  NNLSG +P  +      +  L L  N   G 
Sbjct: 415 DMSDNHLSGRIPSYLCLHSNMI-ILNLGTNNLSGNIPTGITTCKTLVQ-LRLARNNLVGR 472

Query: 527 IPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586
            P NL K   +  I+L  N  +G IPR + NCS L+ L L DN      P  +G L  L 
Sbjct: 473 FPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLG 532

Query: 587 VLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRY 646
            L + SNK  G +     +C    L+ +D+  N F+G LPS                  Y
Sbjct: 533 TLNISSNKLTGEVPSEIFNCKM--LQRLDMCCNNFSGTLPSEVGSL-------------Y 577

Query: 647 MQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGL 706
             E++  +  N      + + N  +          LT + +  N F+G IP  + +L GL
Sbjct: 578 QLELLKLSNNNLSGTIPVALGNLSR----------LTELQMGGNLFNGSIPRELGSLTGL 627

Query: 707 QI-LSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
           QI L+L+ N L G IP  L NL  LE L L+NN  SG+IP     L+ L  +N S N  T
Sbjct: 628 QIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLT 687

Query: 766 GPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISEAPTNEDQIEDSEESLLSGVSDWKI 825
           GPIP  +  +    +SF GN GLCG PL ++C I   P    Q          G+   KI
Sbjct: 688 GPIPLLRNISM---SSFIGNEGLCGPPL-NQC-IQTQPFAPSQSTGKP----GGMRSSKI 738

Query: 826 ILIGYAGGLIVGVEAMGGSLFTISMQ 851
           I I  A  +I GV  M  +L    M+
Sbjct: 739 IAITAA--VIGGVSLMLIALIVYLMR 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  278 bits (712), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 251/796 (31%), Positives = 369/796 (46%), Gaps = 129/796 (16%)

Query: 41  KAASWKPEEGNN--IDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEW 98
           K +SW  +   N    C SW GV CN   G + +L+L+++ ++G+               
Sbjct: 49  KLSSWVHDANTNTSFSCTSWYGVSCNSR-GSIEELNLTNTGIEGT--------------- 92

Query: 99  LDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDP 158
               F DF         I+LS+L+Y++LS    SG IP +   LSKL Y DLS N     
Sbjct: 93  ----FQDF-------PFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGE 141

Query: 159 VELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSL 218
           +    PSLGNL     NL  L L    ++S IP  L  + S+T L+LS   L G IPSSL
Sbjct: 142 IS---PSLGNLK----NLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSL 194

Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
           GN+  L+ L L  N L+  +P  +G + S+ +L L QN L+G +P+++GNL +L  + L 
Sbjct: 195 GNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLY 254

Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSL 338
            N   G +P  +GN+  +  L+L+ N  +G +P+S GNL++L  L +++   +G IP  L
Sbjct: 255 ENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKL 314

Query: 339 SNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAV 398
            N+  +  L+ S N  +G +     L N K L  L+L  N L+ +               
Sbjct: 315 GNIESMIDLELSNNKLTGSIPSS--LGNLKNLTILYLYENYLTGV--------------- 357

Query: 399 SLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG-- 456
                    IP  L N   +  L L +NK+ G +P         +FG+L           
Sbjct: 358 ---------IPPELGNMESMIDLQLNNNKLTGSIP--------SSFGNLKNLTYLYLYLN 400

Query: 457 ---------FDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLG 507
                         + +N  +S N LTG +P    N + +LESL L  N+LSG +P  + 
Sbjct: 401 YLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFT-KLESLYLRVNHLSGAIPPGVA 459

Query: 508 NFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNL-EFLDL 566
           N S  L+ L L  N F+G  P+ + KG  L+ I L  N L+G IP+SL +C +L     L
Sbjct: 460 N-SSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFL 518

Query: 567 GDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLP 626
           G+    DIF ++ G  PDLN +    NKFHG I         PKL  + +S N  TG +P
Sbjct: 519 GNKFTGDIFEAF-GIYPDLNFIDFSHNKFHGEISSNWEKS--PKLGALIMSNNNITGAIP 575

Query: 627 SMAFQCWNAMKVV---------------------NASELRYMQEVIPFNEGNGIYDYSLT 665
           +   + WN  ++V                     N S LR     +  N+ +G     L+
Sbjct: 576 T---EIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLR-----LNGNQLSGRVPAGLS 627

Query: 666 MSNKGQMMSYK------KIPDILTAVI------LSSNRFDGEIPTSISNLKGLQILSLAD 713
                + +         +IP    + +      LS N+FDG IP  +S L  L  L L+ 
Sbjct: 628 FLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQLDLSH 686

Query: 714 NSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQ 773
           N L G IPS L +L  L+ LDLS+N  SG IP     +  L   ++S+N   GP+P    
Sbjct: 687 NQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPT 746

Query: 774 FATFDKTSFDGNSGLC 789
           F      + + N GLC
Sbjct: 747 FRKATADALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  276 bits (706), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 248/770 (32%), Positives = 355/770 (46%), Gaps = 111/770 (14%)

Query: 51  NNID--CCSWDGVQCNENTGH-------VIKLDLSSSCLQGSINSSSSLFKLVHLEWLDL 101
           N ID   C+W GV C+            V  LDLSS  L G +  S S+  LV+L +L+L
Sbjct: 59  NGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIV--SPSIGGLVNLVYLNL 116

Query: 102 AFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVEL 161
           A+N   G +IP EI N S L  + L++  F G IP EI +LS+L   ++ +N        
Sbjct: 117 AYNALTG-DIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNK------- 168

Query: 162 RKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNI 221
                                   +S P+P  +  L +L  L     +L G +P SLGN+
Sbjct: 169 ------------------------LSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNL 204

Query: 222 TRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNR 281
            +L       N  S  +PT IG   +LK L L QN +SGELP  IG L  L++V L  N+
Sbjct: 205 NKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNK 264

Query: 282 FLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNL 341
           F G +P  +GNLT L  L+L  N   G +P+  GN++SL+ L +Y+ + +G IP  L  L
Sbjct: 265 FSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKL 324

Query: 342 THLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLC 401
           + +  +DFS N  SG++ +++  ++   L +LF   N+L+ +                  
Sbjct: 325 SKVMEIDFSENLLSGEIPVELSKISELRLLYLF--QNKLTGI------------------ 364

Query: 402 SCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFG---HLNLSHNFLTG-F 457
                 IP  L    +L  LDL+ N + G +P     P  QN      L L HN L+G  
Sbjct: 365 ------IPNELSKLRNLAKLDLSINSLTGPIP-----PGFQNLTSMRQLQLFHNSLSGVI 413

Query: 458 DQHPNTVNYL----VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWL 513
            Q     + L     S N L+G+IP +IC  SN L  L+L  N + G +P  +      L
Sbjct: 414 PQGLGLYSPLWVVDFSENQLSGKIPPFICQQSN-LILLNLGSNRIFGNIPPGVLRCKSLL 472

Query: 514 SILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573
             L +  N+ +G  P  L K   L  I+L  N   G +P  +  C  L+ L L  NQ   
Sbjct: 473 Q-LRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSS 531

Query: 574 IFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCW 633
             P+ +  L +L    + SN   G I     +C    L+ +DLS+N F G LP       
Sbjct: 532 NLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKM--LQRLDLSRNSFIGSLPP-ELGSL 588

Query: 634 NAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFD 693
           + ++++  SE R+    IPF  GN  +                     LT + +  N F 
Sbjct: 589 HQLEILRLSENRFSGN-IPFTIGNLTH---------------------LTELQMGGNLFS 626

Query: 694 GEIPTSISNLKGLQI-LSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELT 752
           G IP  +  L  LQI ++L+ N   G IP  +GNL  L  L L+NN  SG+IP     L+
Sbjct: 627 GSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLS 686

Query: 753 FLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISEA 802
            L   N S N+ TG +P  + F     TSF GN GLCG  L S C+ S +
Sbjct: 687 SLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRS-CDPSHS 735

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  265 bits (677), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 251/767 (32%), Positives = 367/767 (47%), Gaps = 93/767 (12%)

Query: 102 AFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVEL 161
           A N  +G+ IP E+  L +L  LNL++ + +G+IPS++ E+S+L YL L  N      +L
Sbjct: 223 AENMLNGT-IPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMAN------QL 275

Query: 162 RKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSL-GN 220
           +     +LAD L NL+ L L    ++  IP     +S L  L L+   L G +P S+  N
Sbjct: 276 QGLIPKSLAD-LGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSN 334

Query: 221 ITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN 280
            T L  L LS  +LS E+P  +    SLK+LDL  N+L+G +P ++  L  L  + L  N
Sbjct: 335 NTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNN 394

Query: 281 RFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSN 340
              G +  S+ NLT L WL L  N+  G+LP     LR L  L +YE +FSG+IP  + N
Sbjct: 395 TLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGN 454

Query: 341 LTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSL 400
            T L  +D   N+F G++   I  +    L HL    N L     A S    H+   + L
Sbjct: 455 CTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHL--RQNELVGGLPA-SLGNCHQLNILDL 511

Query: 401 CSCDLT-EIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQ 459
               L+  IP        LE L L +N + G +P  L+  S++N   +NLSHN L G   
Sbjct: 512 ADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLI--SLRNLTRINLSHNRLNG-TI 568

Query: 460 HP--NTVNYL---VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLS 514
           HP   + +YL   V+NN    EIP  + N S  L+ L L  N L+G +P  LG   + LS
Sbjct: 569 HPLCGSSSYLSFDVTNNGFEDEIPLELGN-SQNLDRLRLGKNQLTGKIPWTLGKIRE-LS 626

Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
           +LD+  N  +GTIP  L+    L  IDL++N L G IP  L   S L  L L  NQ  + 
Sbjct: 627 LLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVES 686

Query: 575 FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWN 634
            P+ L     L VL L  N  +G I  P+       L +++L KN+F+G LP        
Sbjct: 687 LPTELFNCTKLLVLSLDGNSLNGSI--PQEIGNLGALNVLNLDKNQFSGSLPQ------- 737

Query: 635 AM-KVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQM-MSYKKIPDILTAVILSSNRF 692
           AM K+    ELR  +              SLT    G++ +   ++ D+ +A+ LS N F
Sbjct: 738 AMGKLSKLYELRLSRN-------------SLT----GEIPVEIGQLQDLQSALDLSYNNF 780

Query: 693 DGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELT 752
            G+IP++I  L  L+ L L+ N L G +P  +G++  L  L++S N   G++        
Sbjct: 781 TGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLK------- 833

Query: 753 FLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISEAPTNEDQIEDS 812
                              KQF+ +   SF GN+GLCG PLS     +   +N  Q    
Sbjct: 834 -------------------KQFSRWPADSFLGNTGLCGSPLS---RCNRVRSNNKQ---- 867

Query: 813 EESLLSGVSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFVFSLIFF 859
                 G+S   +++I      I  + A+G  +  I++ F     FF
Sbjct: 868 -----QGLSARSVVIISA----ISALTAIGLMILVIALFFKQRHDFF 905

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  252 bits (644), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 244/784 (31%), Positives = 345/784 (44%), Gaps = 163/784 (20%)

Query: 56  CSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEI 115
           CSW GV+C+     V  L+LSS  + G                           E  PEI
Sbjct: 57  CSWLGVECDRRQ-FVDTLNLSSYGISG---------------------------EFGPEI 88

Query: 116 INLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD---K 172
            +L  L  + LS   F G IPS++   S L ++DLS NS+           GN+ D    
Sbjct: 89  SHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFT----------GNIPDTLGA 138

Query: 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN 232
           L NL+ L L   ++  P P +L  +  L T+  +G  L G IPS++GN++ L  L L  N
Sbjct: 139 LQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDN 198

Query: 233 KLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN 292
           + S  +P+ +G + +L+EL L  NNL G LP ++ NL +L  +D+  N  +G +P    +
Sbjct: 199 QFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPLDFVS 258

Query: 293 LTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352
             Q+  +SL++N F+G LP   GN  SLR    + C  SG IPS    LT L  L  + N
Sbjct: 259 CKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGN 318

Query: 353 NFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412
           +FSG++  +  L   K +  L L  N+L                          EIP  L
Sbjct: 319 HFSGRIPPE--LGKCKSMIDLQLQQNQLE------------------------GEIPGEL 352

Query: 413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNS 472
                L+ L L +N ++G+VP  +    +Q+   L L                     N+
Sbjct: 353 GMLSQLQYLHLYTNNLSGEVPLSIW--KIQSLQSLQLYQ-------------------NN 391

Query: 473 LTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLL 532
           L+GE+P  +  L  +L SL L  N+ +G++PQ LG  S  L +LDL  N F+G IP NL 
Sbjct: 392 LSGELPVDMTEL-KQLVSLALYENHFTGVIPQDLGANSS-LEVLDLTRNMFTGHIPPNLC 449

Query: 533 KGNILKVIDLSDNLLQGRIPRSLANCSNLE-----------------------FLDLGDN 569
               LK + L  N L+G +P  L  CS LE                       F DL  N
Sbjct: 450 SQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLILEENNLRGGLPDFVEKQNLLFFDLSGN 509

Query: 570 QIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMA 629
                 P  LG L ++  + L SN+  G I  P       KL  ++LS N   G LPS  
Sbjct: 510 NFTGPIPPSLGNLKNVTAIYLSSNQLSGSI--PPELGSLVKLEHLNLSHNILKGILPSEL 567

Query: 630 FQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSS 689
             C + +  ++AS    +   IP   G      SLT                LT + L  
Sbjct: 568 SNC-HKLSELDASH-NLLNGSIPSTLG------SLTE---------------LTKLSLGE 604

Query: 690 NRFDGEIPTS-----------------------ISNLKGLQILSLADNSLHGHIPSCLGN 726
           N F G IPTS                       +  L+ L+ L+L+ N L+G +P  LG 
Sbjct: 605 NSFSGGIPTSLFQSNKLLNLQLGGNLLAGDIPPVGALQALRSLNLSSNKLNGQLPIDLGK 664

Query: 727 LTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG-KQFATFDKTSFDGN 785
           L  LE LD+S+N  SG + + L  +  L F N+S N F+GP+P    +F     TSF GN
Sbjct: 665 LKMLEELDVSHNNLSGTL-RVLSTIQSLTFINISHNLFSGPVPPSLTKFLNSSPTSFSGN 723

Query: 786 SGLC 789
           S LC
Sbjct: 724 SDLC 727

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  247 bits (631), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 239/797 (29%), Positives = 354/797 (44%), Gaps = 141/797 (17%)

Query: 124 LNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGD 183
           LNLS    +G I   I   + L ++DLS N    P+     +L +  + L     L+ GD
Sbjct: 76  LNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGD 135

Query: 184 VTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIG 243
                 IP  L  L +L +L L   +L G IP + GN+  L  L L+  +L+  +P+  G
Sbjct: 136 ------IPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFG 189

Query: 244 TLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLAS 303
            L  L+ L L  N L G +P  IGN  SL     + NR  G +P+ L  L  L  L+L  
Sbjct: 190 RLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGD 249

Query: 304 NDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
           N FSGE+P+  G+L S++ L++   +  G IP  L+ L +L  LD S NN +G +  + +
Sbjct: 250 NSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFW 309

Query: 364 LVNHKLLYHLFLSTNRLS--LLTKATSNTTSHRFRAVSLCSCDLT-EIPKFLKNQHHLEL 420
            +N   L  L L+ NRLS  L     SN TS   + + L    L+ EIP  + N   L+L
Sbjct: 310 RMNQ--LEFLVLAKNRLSGSLPKTICSNNTS--LKQLFLSETQLSGEIPAEISNCQSLKL 365

Query: 421 LDLASNKINGKVPKWLLD----------------------PSMQNFGHLNLSHNFLTGFD 458
           LDL++N + G++P  L                         ++ N     L HN L G  
Sbjct: 366 LDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEG-- 423

Query: 459 QHPNTVNYL-------VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSD 511
           + P  + +L       +  N  +GE+P  I N + RL+ +D   N LSG +P  +G   D
Sbjct: 424 KVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCT-RLQEIDWYGNRLSGEIPSSIGRLKD 482

Query: 512 WLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQI 571
            L+ L L+ N+  G IP +L   + + VIDL+DN L G IP S    + LE   + +N +
Sbjct: 483 -LTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSL 541

Query: 572 RDIFPSWLGTLPDLNVLILKSNKFHGLIRE----------PKTDCGFP-----------K 610
           +   P  L  L +L  +   SNKF+G I              T+ GF             
Sbjct: 542 QGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTN 601

Query: 611 LRIIDLSKNRFTGKLP---------SMAFQCWNAMKVVNASEL-------------RYMQ 648
           L  + L KN+FTG++P         S+     N++  +   EL              Y+ 
Sbjct: 602 LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLS 661

Query: 649 EVIPFNEGNGIYDYSLTMSNKGQMMSYK----KIPDILTAVILSSNRFDGEIPTSISNLK 704
            VIP   G       L +S+   + S       + +ILT + L  N  +G IP  I NL+
Sbjct: 662 GVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILT-LFLDGNSLNGSIPQEIGNLQ 720

Query: 705 GLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLE-FFNVSDNH 763
            L  L+L +N L G +PS +G L+ L  L LS N  +G+IP ++ +L  L+   ++S N+
Sbjct: 721 ALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNN 780

Query: 764 FTGPIPQ----------------------------------------------GKQFATF 777
           FTG IP                                                KQF+ +
Sbjct: 781 FTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSRW 840

Query: 778 DKTSFDGNSGLCGRPLS 794
              +F GN+GLCG PLS
Sbjct: 841 QADAFVGNAGLCGSPLS 857

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  245 bits (626), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 234/737 (31%), Positives = 345/737 (46%), Gaps = 96/737 (13%)

Query: 124 LNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGD 183
           LNLS++  SGQ+ SEI EL  L  LDLS NS+     L   +LGN     T+L+ L L +
Sbjct: 81  LNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSG---LLPSTLGNC----TSLEYLDLSN 133

Query: 184 VTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIG 243
              S  +P     L +LT L L   +L G IP+S+G +  L+ L +S+N LS  +P  +G
Sbjct: 134 NDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLG 193

Query: 244 TLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLAS 303
               L+ L L  N L+G LP S+  L +L ++ +S N   G++     N  +L  L L+ 
Sbjct: 194 NCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLSF 253

Query: 304 NDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
           NDF G +P   GN  SL +L + +C  +G IPSS+  L  +S +D S N  SG +  +  
Sbjct: 254 NDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQE-- 311

Query: 364 LVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDL 423
           L N   L  L L+ N+L                          EIP  L     L+ L+L
Sbjct: 312 LGNCSSLETLKLNDNQLQ------------------------GEIPPALSKLKKLQSLEL 347

Query: 424 ASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICN 483
             NK++G++P                      G  +  +    LV NN+LTGE+P  +  
Sbjct: 348 FFNKLSGEIP---------------------IGIWKIQSLTQMLVYNNTLTGELPVEVTQ 386

Query: 484 LSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLS 543
           L + L+ L L  N   G +P  LG  +  L  +DL  N+F+G IP +L  G  L++  L 
Sbjct: 387 LKH-LKKLTLFNNGFYGDIPMSLG-LNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILG 444

Query: 544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPK 603
            N L G+IP S+  C  LE + L DN++  + P +  +L  L+ + L SN F G I  P+
Sbjct: 445 SNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESL-SLSYVNLGSNSFEGSI--PR 501

Query: 604 TDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFN-EGNGIYDY 662
           +      L  IDLS+N+ TG +P        ++ ++N S   Y++  +P    G     Y
Sbjct: 502 SLGSCKNLLTIDLSQNKLTGLIPP-ELGNLQSLGLLNLSH-NYLEGPLPSQLSGCARLLY 559

Query: 663 SLTMSNK--GQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHI 720
               SN   G + S  +    L+ ++LS N F G IP  ++ L  L  L +A N+  G I
Sbjct: 560 FDVGSNSLNGSIPSSFRSWKSLSTLVLSDNNFLGAIPQFLAELDRLSDLRIARNAFGGKI 619

Query: 721 PSCLGNLTDLE-SLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDK 779
           PS +G L  L   LDLS N F+G+IP  L  L  LE  N+S+N  TGP+   +   + ++
Sbjct: 620 PSSVGLLKSLRYGLDLSANVFTGEIPTTLGALINLERLNISNNKLTGPLSVLQSLKSLNQ 679

Query: 780 --------------------TSFDGNSGLCGRPLSSECEI--SEAPTNEDQIEDSEESLL 817
                               + F GN  LC +   S   I   E  + + Q++       
Sbjct: 680 VDVSYNQFTGPIPVNLLSNSSKFSGNPDLCIQASYSVSAIIRKEFKSCKGQVK------- 732

Query: 818 SGVSDWKIILIGYAGGL 834
             +S WKI LI     L
Sbjct: 733 --LSTWKIALIAAGSSL 747

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  242 bits (618), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 227/745 (30%), Positives = 330/745 (44%), Gaps = 131/745 (17%)

Query: 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN 232
           L NL+EL L     S  IP  +  L  L TL LSG  L G +P  L  + +L++LDLS N
Sbjct: 88  LKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDN 147

Query: 233 KLSDELP-TFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLG 291
             S  LP +F  +L +L  LD+  N+LSGE+P  IG L++L  + + LN F G++PS +G
Sbjct: 148 HFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIG 207

Query: 292 N------------------------LTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYE 327
           N                        L  L  L L+ N     +P SFG L +L  L++  
Sbjct: 208 NISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVS 267

Query: 328 CKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDI---------------------FLVN 366
            +  G IP  L N   L  L  S N+ SG + L++                     ++  
Sbjct: 268 AELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSLPSWMGK 327

Query: 367 HKLLYHLFLSTNRLSLLTKATSNTTSHR------FRAVSLCSCDLT-EIPKFLKNQHHLE 419
            K+L  L L+ NR S           H        + +SL S  L+  IP+ L     LE
Sbjct: 328 WKVLDSLLLANNRFS-------GEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLE 380

Query: 420 LLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG-----FDQHPNTVNYLVSNNSLT 474
            +DL+ N ++G + +        + G L L++N + G       + P     L SNN  T
Sbjct: 381 AIDLSGNLLSGTIEEVF--DGCSSLGELLLTNNQINGSIPEDLWKLPLMALDLDSNN-FT 437

Query: 475 GEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG 534
           GEIP  +   +N +E    SYN L G LP  +GN +  L  L L  N+ +G IP  + K 
Sbjct: 438 GEIPKSLWKSTNLME-FTASYNRLEGYLPAEIGNAAS-LKRLVLSDNQLTGEIPREIGKL 495

Query: 535 NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNK 594
             L V++L+ N+ QG+IP  L +C++L  LDLG N ++   P  +  L  L  L+L  N 
Sbjct: 496 TSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNN 555

Query: 595 FHGLIREPKTDCGFPKLR-----------IIDLSKNRFTGKLPSMAFQCWNAMKV----- 638
             G I   K    F ++            I DLS NR +G +P    +C   +++     
Sbjct: 556 LSGSIPS-KPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNN 614

Query: 639 -----VNASELRY------------MQEVIPFNEGNGIYDYSLTMSNK---GQMMSYKKI 678
                + AS  R             +   IP   GN +    L ++N    G +     +
Sbjct: 615 HLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGL 674

Query: 679 PDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGH------------------- 719
              L  + L+ N+ DG +P S+ NLK L  + L+ N+L G                    
Sbjct: 675 LGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQN 734

Query: 720 -----IPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQF 774
                IPS LGNLT LE LD+S N  SG+IP ++  L  LEF N++ N+  G +P     
Sbjct: 735 KFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVC 794

Query: 775 ATFDKTSFDGNSGLCGRPLSSECEI 799
               K    GN  LCGR + S+C+I
Sbjct: 795 QDPSKALLSGNKELCGRVVGSDCKI 819

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	930
359485824	973	PREDICTED: receptor-like protein 12-like	0.884	0.845	0.495	0.0
359490156	886	PREDICTED: receptor-like protein 12-like	0.864	0.907	0.495	0.0
359485822	993	PREDICTED: receptor-like protein 12-like	0.878	0.822	0.465	0.0
255548694	984	serine/threonine-protein kinase bri1, pu	0.875	0.827	0.435	0.0
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.902	0.488	0.450	0.0
224140517	979	predicted protein [Populus trichocarpa]	0.880	0.836	0.451	0.0
224140513	947	predicted protein [Populus trichocarpa]	0.882	0.866	0.458	0.0
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.883	0.818	0.445	0.0
224140509	961	predicted protein [Populus trichocarpa]	0.882	0.854	0.432	0.0
147766212	925	hypothetical protein VITISV_018438 [Viti	0.887	0.891	0.458	0.0

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/923 (49%), Positives = 561/923 (60%), Gaps = 100/923 (10%)

Query: 1   MLWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPE---EGNNIDCCS 57
           M  PLCH  E SALLQFK+S +I E        G    +PK A WK     E    DCCS
Sbjct: 31  MHRPLCHDSEGSALLQFKQSFLIDEHAS-----GNPSAYPKVAMWKSHGEGEREGSDCCS 85

Query: 58  WDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIIN 117
           WDGV+C+  TGHVI L L+SSCL GSINSSS+LF LVHL+ LDL+ NDF+ SEIP  +  
Sbjct: 86  WDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVHLQRLDLSDNDFNYSEIPFGVGQ 145

Query: 118 LSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLK 177
           LS L  L+LS + FSGQIPSE+L LSKL +LDLS N     ++L+KP L NL   LT+LK
Sbjct: 146 LSRLRSLDLSFSGFSGQIPSELLALSKLVFLDLSANP---KLQLQKPGLRNLVQNLTHLK 202

Query: 178 ELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHL---------- 227
           +L L  V ISS IP+ L  LSSLT+L L  C L G  P  +  +  L +L          
Sbjct: 203 KLHLSQVNISSTIPYELASLSSLTSLFLGECGLHGEFPMKIFQLPSLQYLTVRDNLDLIS 262

Query: 228 --------------DLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE 273
                         DL+    S ELPT IG LGSL ELD+   N +G +P+S+G+L  L 
Sbjct: 263 YLPEFQETSPLKMLDLAGTSFSGELPTSIGRLGSLTELDISSCNFTGSVPSSLGHLTQLY 322

Query: 274 QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS------------------------GE 309
            +DLS N F G++PSS+ NLTQL +LSL+ NDF+                        GE
Sbjct: 323 YLDLSNNHFSGQIPSSMANLTQLIYLSLSWNDFNVGTLSWLGQQTKLTYLYLNQINLIGE 382

Query: 310 LPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKL 369
           +P S  N+  L  L + + + SGQIPSSL  L +L  L    N  +G ++L + L   K 
Sbjct: 383 IPFSLVNMSQLNILSLSDNQLSGQIPSSLFELVNLQGLYLLSNYLNGTVELQL-LSKLKN 441

Query: 370 LYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKIN 429
           L +L LS NRLS L+   +N T  +F+ + L SC+LTE P FL+NQH LE++ L+ NKI+
Sbjct: 442 LIYLQLSDNRLSFLSYTRTNATLPKFKHLGLGSCNLTEFPDFLQNQHELEIITLSENKIH 501

Query: 430 GKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHP---------------------------N 462
           G +PKW+ + S +    L LS NFLTGFDQ P                           +
Sbjct: 502 GPIPKWVWNISKETLVTLELSENFLTGFDQRPFVLPWSKLHTLRLDSNMLQGPLPVPPPS 561

Query: 463 TVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNK 522
           TV YLVS N LTGEI   ICN+++ LE LDLS NNLSG +PQCL NFS  L +LDL  N 
Sbjct: 562 TVEYLVSGNKLTGEISPLICNMTS-LELLDLSSNNLSGRIPQCLANFSRSLFVLDLGSNS 620

Query: 523 FSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTL 582
             G IP+     + L VIDL DN  QG+IPRSL NC+ LE L LG+N+I DIFP WLG L
Sbjct: 621 LDGPIPEICTVSHNLNVIDLGDNQFQGQIPRSLVNCTMLEHLVLGNNKINDIFPFWLGAL 680

Query: 583 PDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVN-A 641
           P L VLIL+SN+FHG I    T+  FPKLRIIDLS N F G LPS  FQ W+AMK+ + A
Sbjct: 681 PQLQVLILRSNRFHGAIGSWHTNFRFPKLRIIDLSDNEFIGDLPSEYFQNWDAMKLTDIA 740

Query: 642 SELRYMQEVIPFNEGNGI----YDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIP 697
           S LRYMQ     +  N +    Y YS+TM+NKG    Y++I D   A+  S N F G+IP
Sbjct: 741 SGLRYMQISPMIDLKNNVMITGYMYSMTMTNKGMQRFYERILDTFMAIDFSGNNFKGQIP 800

Query: 698 TSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFF 757
           TSI +LKG+ +L+L  N L GHIPS LGNLT LESLDLS N+ SG+IP QL  LTFLEFF
Sbjct: 801 TSIGSLKGIHLLNLGGNDLTGHIPSSLGNLTQLESLDLSQNKLSGEIPWQLTRLTFLEFF 860

Query: 758 NVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISEA--PTNEDQIEDSEES 815
           NVS NH TG IPQGKQFATF+  SFDGN GLCG PLS EC  SEA  PT+    + S   
Sbjct: 861 NVSHNHLTGHIPQGKQFATFENASFDGNLGLCGSPLSRECGSSEALPPTSSSSKQGSTTK 920

Query: 816 LLSGVSDWKIILIGYAGGLIVGV 838
                 DWKI+L+GY  GL++GV
Sbjct: 921 F-----DWKIVLMGYGSGLLIGV 938

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/878 (49%), Positives = 538/878 (61%), Gaps = 74/878 (8%)

Query: 1   MLWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKP----EEGNNIDCC 56
           M  PLCH  ERSALLQFK+S +I      D        +PK A WK     EEG+  DCC
Sbjct: 9   MQQPLCHDSERSALLQFKQSFLIDGHASGDP-----SAYPKVAMWKSHGEGEEGS--DCC 61

Query: 57  SWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII 116
           SWDGV+C+  TGHVI L L+SSCL GSINS+S+LF LVHL  LDL+ NDF+ S+IP  + 
Sbjct: 62  SWDGVECDRETGHVIGLHLASSCLYGSINSNSTLFSLVHLRRLDLSDNDFNYSQIPFGVG 121

Query: 117 NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176
            LS L  L+LSS  F+GQIPSE+L LSKL +L+LS N     ++L+KP L  L   LT+L
Sbjct: 122 QLSRLRSLDLSSDRFAGQIPSELLALSKLVFLNLSANPM---LQLQKPGLRYLVQNLTHL 178

Query: 177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN-KLS 235
           KEL L  V ISS IPH L  LSSL TL L  C L G  P ++  +  L  L + +N  L 
Sbjct: 179 KELHLRQVNISSTIPHELANLSSLRTLFLRECGLHGEFPMNIFQLPSLQFLSVRYNPDLI 238

Query: 236 DELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQ 295
             LP F  T   LK L L   + SGELP SIG L SL ++D+S   F G VPS LG+L+Q
Sbjct: 239 GYLPEFQET-SPLKLLYLSGTSFSGELPTSIGRLGSLTKLDISSCNFTGLVPSPLGHLSQ 297

Query: 296 LHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS 355
           L +L L++N FSG++P+S  NL  L  LD+      G IP+SL  L +L +L  + N+ +
Sbjct: 298 LSYLDLSNNFFSGQIPSSMANLTRLTFLDLSLNNLEGGIPTSLFELVNLQYLSVADNSLN 357

Query: 356 GKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQ 415
           G ++L                 NRLSLL    +N T  +F+ + L SC+LTE P FL+NQ
Sbjct: 358 GTVEL-----------------NRLSLLGYTRTNVTLPKFKLLGLDSCNLTEFPDFLQNQ 400

Query: 416 HHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQH--------------- 460
             LE+L L+ NKI+G +PKW+ + S +N   L+LS N LTGF+QH               
Sbjct: 401 DELEVLFLSDNKIHGPIPKWMWNISQENLESLDLSGNLLTGFNQHPVVLPWSKLSILELD 460

Query: 461 ------------PNTVNYL-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLG 507
                       P+T+ Y  VS N L GEI   ICN+S+    LDLS NNLSG +PQCL 
Sbjct: 461 SNMLQGPLPIPPPSTIEYYSVSRNKLIGEISPLICNMSSL-ILLDLSSNNLSGRIPQCLA 519

Query: 508 NFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLG 567
           N S  L ILDL  N   G IP      N L+VIDL +N  QG+IPRS ANC  LE L LG
Sbjct: 520 NLSKSLFILDLGSNNLDGPIPQTCTVPNNLRVIDLGENQFQGQIPRSFANCMMLEHLVLG 579

Query: 568 DNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPS 627
           +NQI DIFP WLG LP L VLIL+SN+FHG I    ++  FPKLRI+DLS N+F G LPS
Sbjct: 580 NNQIDDIFPFWLGALPQLQVLILRSNRFHGAIGSWHSNFRFPKLRIVDLSDNKFIGDLPS 639

Query: 628 MAFQCWNAMKVVN-ASELRYMQEV----IPFNEGNGIYDYSLTMSNKGQMMSYKKIPDIL 682
             FQ W+AMK+ + A++LRYMQ      IP       Y YS+TM+N+G    Y+KIPD+ 
Sbjct: 640 EYFQNWDAMKLTDIANDLRYMQARPKFQIPGYGWTAHYMYSMTMTNRGMQRFYEKIPDVF 699

Query: 683 TAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSG 742
            A+  S N F G+IPTSI NL G  +L+L  N+L GHIPS LG+LT LESLDLS N+ SG
Sbjct: 700 IAIDFSGNNFKGQIPTSIGNLNGFHLLNLGSNNLTGHIPSSLGDLTQLESLDLSQNQLSG 759

Query: 743 QIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISEA 802
           +IP QL  +TFL FFNVS NH TGPIPQG QF TF   SFDGN GLCG PLS  C  SEA
Sbjct: 760 EIPLQLTRITFLAFFNVSHNHLTGPIPQGNQFTTFPNASFDGNLGLCGSPLSRACGSSEA 819

Query: 803 --PTNEDQIEDSEESLLSGVSDWKIILIGYAGGLIVGV 838
             PT+    + S         DWK +L+GY  GL++GV
Sbjct: 820 SPPTSSSSKQGSTSEF-----DWKFVLMGYGSGLVIGV 852

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/943 (46%), Positives = 552/943 (58%), Gaps = 126/943 (13%)

Query: 4   PLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQC 63
           PLCH +E SALLQFK+S +I E    D+     + +PK A+WK   G   DCCSWDGV+C
Sbjct: 34  PLCHDNESSALLQFKQSFLIDEYASEDS-----YAYPKVATWK-SHGEGSDCCSWDGVEC 87

Query: 64  NENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSY 123
           +  TGHVI L L+SSCL GSINSSS+LF LVHL  LDL+ NDF+ SEIP  +  LS L  
Sbjct: 88  DRETGHVIGLHLASSCLYGSINSSSTLFSLVHLRRLDLSDNDFNYSEIPHGVSQLSRLRS 147

Query: 124 LNLSSAAFSGQIPSEI-LELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLG 182
           LNLS + FSGQIPSE+ L LSKL +LDLS N     ++L+K  L NL   LT  K+L L 
Sbjct: 148 LNLSDSQFSGQIPSEVLLALSKLVFLDLSGNPM---LQLQKHGLRNLVQNLTLFKKLHLS 204

Query: 183 DVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN-KLSDELPTF 241
            V ISS IPH L  LSSLT+L L  C L G  P  +  +  L  L L +N  L+   P F
Sbjct: 205 QVNISSTIPHALANLSSLTSLRLRECGLHGEFPKKILQLPSLQFLSLRYNPNLNIYFPEF 264

Query: 242 IGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSL 301
             T   LK L L   + SGELP S+G L+SL ++D+S   F G VPSSLG+LTQL +L L
Sbjct: 265 QET-SPLKVLYLAGTSYSGELPASMGKLSSLSELDISSCNFTGLVPSSLGHLTQLSYLDL 323

Query: 302 ASNDFS------------------------------------------------GELPAS 313
           + N FS                                                GE+P+S
Sbjct: 324 SYNFFSGPIPSFLANLTTLTYLSLTSNNFSAGTLAWLGEQTKLTILYLDQINLNGEIPSS 383

Query: 314 FGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF-LVNHKLLY- 371
             N+  L  L++ + +  GQIPS L NLT L+ L    N   G +   +F LVN + LY 
Sbjct: 384 LVNMSELTILNLSKNQLIGQIPSWLMNLTQLTELYLQENKLEGPIPSSLFELVNLQYLYL 443

Query: 372 -----------HLF----------LSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK 410
                      H+           LS NR+SLL+  ++N T  +F+ + L SC+LTE P 
Sbjct: 444 HSNYLTGTVELHMLSNLKNLTDLQLSYNRISLLSYTSTNATLPKFKLLGLASCNLTEFPD 503

Query: 411 FLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPN-------- 462
           FL+NQ  LE+L L++NKI+G +PKW+ + S +    L LS+NFL+GF Q P+        
Sbjct: 504 FLQNQQELEVLILSTNKIHGPIPKWMWNISKETLEALFLSNNFLSGFSQVPDVLPWSRMS 563

Query: 463 -------------------TVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP 503
                              TV Y VS N L GEIPS ICNL++         NNLSG +P
Sbjct: 564 ILELSSNMLQGSLPVPPSSTVEYSVSRNRLAGEIPSLICNLTSLSLLDLSG-NNLSGSIP 622

Query: 504 QCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEF 563
           QC    S  LSIL+L+ N  +G IP      + L++IDLS+N LQG+IP+SLA+C  LE 
Sbjct: 623 QCFTKLSSSLSILNLRRNNLNGPIPQTCTNTSNLRMIDLSENQLQGQIPKSLASCMMLEE 682

Query: 564 LDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTG 623
           L LG+N I DIFP WLG+LP L VLIL+ N+FHG I  PKT+  F KLRIIDLS N FTG
Sbjct: 683 LVLGNNLINDIFPFWLGSLPRLQVLILRFNRFHGAIGSPKTNFEFSKLRIIDLSYNGFTG 742

Query: 624 KLPSMAFQCWNAMKVVNASELRYMQE----VIPFNEGNGIYDYSLTMSNKGQMMSYKKIP 679
            LPS   + W+AM++V+A  L Y+Q      +P       Y +S TM+NKG    Y+ IP
Sbjct: 743 NLPSEYLKNWDAMRIVDAENLTYIQVDEEFEVPQYSWEEPYPFSTTMTNKGMTREYELIP 802

Query: 680 DILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNR 739
           DIL A+ LSSNRF GEIP SI N  GL+ L+L++N+L G IP+ L NLT LE+LDLS N+
Sbjct: 803 DILIAIDLSSNRFHGEIPESIGNPNGLRWLNLSNNALIGAIPTSLANLTLLEALDLSQNK 862

Query: 740 FSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEI 799
            S +IPQQLV+LTFL FFNVS NH TGPIPQGKQFATF + SFDGN GLCG PLS  C  
Sbjct: 863 LSREIPQQLVQLTFLAFFNVSHNHLTGPIPQGKQFATFSRASFDGNPGLCGSPLSRACGS 922

Query: 800 SE----APTNEDQIEDSEESLLSGVSDWKIILIGYAGGLIVGV 838
           SE     P++  Q   SE        DWK +L+G   GL++GV
Sbjct: 923 SEQSPPTPSSSKQGSTSE-------FDWKFVLMGCGSGLVIGV 958

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548694|ref|XP_002515403.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223545347|gb|EEF46852.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/944 (43%), Positives = 564/944 (59%), Gaps = 130/944 (13%)

Query: 5   LCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKA--ASWKPEEGNNIDCCSWDGVQ 62
           +CH DERSAL QFKESL++              C P A  +SW   +G+  +CCSW G++
Sbjct: 26  ICHDDERSALWQFKESLVVDN----------FACDPSAKLSSWS-LQGDMNNCCSWGGIE 74

Query: 63  CNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLS 122
           CN NTGHVI LDLSSSCL GSINSSS++F+L++L  L+LA N+F+ S IP EI  LSSL+
Sbjct: 75  CNNNTGHVIALDLSSSCLYGSINSSSTIFRLIYLTSLNLADNNFNASTIPSEIRTLSSLT 134

Query: 123 YLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLG 182
           YLNLS + FS QIP ++LELSKL  LDLS N    P++L+ PSL +L +KL +L +L L 
Sbjct: 135 YLNLSLSNFSNQIPIQVLELSKLVSLDLSDN----PLKLQNPSLKDLVEKLAHLSQLHLN 190

Query: 183 DVTISSPIPH------------------------------NLTYL--------------- 197
            VTISS +P                               NL  L               
Sbjct: 191 GVTISSEVPQSLANLSFLSSLLLRDCKLQGEFPVKIFQLPNLRILIVRLNPDLTGYLPEF 250

Query: 198 ---SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLL 254
              SSL  L L G +  G++P S+GN+  L        +    +P  IG LG+L  LDL 
Sbjct: 251 QVGSSLEALWLEGTNFSGQLPHSIGNLKLLSSFVAGSCRFGGPIPPSIGDLGNLNFLDLS 310

Query: 255 QNNLSGELPNSIGNLASLEQVDLSLNRFL------------------------GKVPSSL 290
            NN SG++P+S GNL  L  + LS N F                         G +PSS+
Sbjct: 311 YNNFSGKIPSSFGNLLQLTYLSLSFNNFSPGTLYWLGNLTNLYFLNLAQTNSHGNIPSSV 370

Query: 291 GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFS 350
           GN+T+L +L L SN  +G++P+  GNL +L  L +   +  G IP S+  L  L  L+  
Sbjct: 371 GNMTKLIYLRLYSNKLTGQVPSWLGNLTALLELQLAANELQGPIPESIFELPSLQVLELH 430

Query: 351 LNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK 410
            NN SG +  D+FL   K L  L LS N LSL++    N T HRF+ + L SC+L+E P 
Sbjct: 431 SNNLSGTLKFDLFL-KSKNLVSLQLSDNHLSLISSPPINITVHRFKTLGLNSCNLSEFPF 489

Query: 411 FLKNQHH-LELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNY--- 466
           FL+ ++  LE LDL+ N+I G +P W+ D   ++   LNL+ NFLTGF++  N + +   
Sbjct: 490 FLRGENDDLEHLDLSQNEIQGLIPDWITDLGTESLIILNLASNFLTGFERPFNVLPWKNL 549

Query: 467 ----LVSNN--------------------SLTGEIPSWICNLSNRLESLDLSYNNLSGLL 502
               L +NN                    SLTGEI    CNL++ L +LDLS NNLSG L
Sbjct: 550 HVLNLSANNLEGPLPIPPPSISIYIISQNSLTGEISPMFCNLTSVL-TLDLSRNNLSGSL 608

Query: 503 PQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLE 562
           P+CLGNFS+++ ++DL+ N FSGTIPD       ++++D S N L+G++PRSLANC+ LE
Sbjct: 609 PRCLGNFSNFVLVMDLRSNNFSGTIPDRFESECKVRMMDFSHNKLEGKLPRSLANCTKLE 668

Query: 563 FLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
            L+LG+NQI D+FPSW G LP L VLIL+SN+  G++ +P+T+  FP+L+IIDLS N FT
Sbjct: 669 MLNLGNNQIYDVFPSWAGLLPQLRVLILRSNRLVGVVGKPETNFDFPQLQIIDLSDNTFT 728

Query: 623 GKLPSMAFQCWNAMKVVNASELRYMQEVIPFN----EGNGIYDYSLTMSNKGQMMSYKKI 678
           G+LP   FQ W AMK ++  +L+Y++  I F       +  + YS+T++NKG+  +Y++I
Sbjct: 729 GELPFEYFQKWTAMKSIDQDQLKYIEVDISFQVLDYSWSNHFSYSITITNKGRETTYERI 788

Query: 679 PDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNN 738
                 +  SSNRF+G IP  I NL+ +Q+L+L++N L G IP  LG++ +LE+LDLS N
Sbjct: 789 LKFFAVINFSSNRFEGRIPEVIGNLREVQLLNLSNNILTGQIPPSLGSMKELEALDLSRN 848

Query: 739 RFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECE 798
           + SG+IP +L +L+FL FFNVSDN+ TGP+P+G QF TF+  SFD N GLCG PLS +C 
Sbjct: 849 QLSGEIPMKLAQLSFLAFFNVSDNNLTGPVPRGNQFDTFENNSFDANPGLCGNPLSKKCG 908

Query: 799 ISE----APTNEDQIEDSEESLLSGVSDWKIILIGYAGGLIVGV 838
            SE    AP+N +Q + SE  L  G   WK++L GYA GL++GV
Sbjct: 909 FSEASTLAPSNFEQDQGSEFPLEFG---WKVVLFGYASGLVIGV 949

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/965 (45%), Positives = 563/965 (58%), Gaps = 126/965 (13%)

Query: 3    WP-LCHGDERS--ALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWD 59
            WP LC  +E S   LL+FK+S +I++           F +PK A+WK EEG+  DCCSWD
Sbjct: 762  WPQLCDDNESSDDPLLEFKQSFVIAQHASDXP-----FAYPKVATWKSEEGS--DCCSWD 814

Query: 60   GVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLS 119
            GV+CN++TGHVI LDL SSCL GSINSSS+LF LVHL+ LDL+ NDF+ S IP  +  LS
Sbjct: 815  GVECNKDTGHVIGLDLGSSCLYGSINSSSTLFLLVHLQSLDLSDNDFNYSNIPSGVDQLS 874

Query: 120  SLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKEL 179
            SL  LNLSS+ FSGQIPSE+L LSKL +LDLS N      +L+KP L NL  KL +LK L
Sbjct: 875  SLRSLNLSSSRFSGQIPSEVLALSKLVFLDLSQNQ----XKLQKPDLRNLVQKLIHLKNL 930

Query: 180  VLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN------- 232
             L  V ISSP+P  L   SSL +L L  C L G  P  +  +  L  L +  N       
Sbjct: 931  DLSQVNISSPVPDTLANYSSLXSLFLENCGLSGEFPRDILQLPSLQFLSVRNNPDLTGYL 990

Query: 233  -----------------KLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQV 275
                               S  LP  +  L SL ELD+   + +G + +SIG L+ L  +
Sbjct: 991  PEFQETSPLKLLTLAGTSFSGGLPASVDNLYSLNELDISSCHFTGLVSSSIGQLSQLTHL 1050

Query: 276  DLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP 335
            DLS N F G++PSSL NL+QL +L ++SN+FSGE     G L  L  L +      G+IP
Sbjct: 1051 DLSRNSFRGQIPSSLANLSQLTFLEVSSNNFSGEAMDWVGKLTKLTHLGLDSINLKGEIP 1110

Query: 336  SSLSNLTHLSFLDFSLNNFSGK-----MDL-------------------DIF-LVNHKLL 370
              L+NLT L +L    N  +GK     M+L                    IF LVN ++L
Sbjct: 1111 PFLANLTQLDYLSLEFNQLTGKIPSWVMNLTRLTSLALGYNKLHGPIPSSIFELVNLEIL 1170

Query: 371  Y----------------------HLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEI 408
            Y                       L L  N+L L T  +SN    +F+ + L SC+L E 
Sbjct: 1171 YLRSXDLTGILELDMLLKLKKLTRLGLXDNKLLLRTDTSSNGXGPKFKVLGLASCNLGEF 1230

Query: 409  PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQH-------- 460
            P FL+NQ  LELL L++NKI+GK+PKW+ +   +    ++L+HNFLTGF+Q         
Sbjct: 1231 PHFLRNQDELELLKLSNNKIHGKIPKWIWNIGKETLSLMDLAHNFLTGFEQPXVXLPWXS 1290

Query: 461  ------------------PNTVN-YLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGL 501
                              P++++ Y V NN  TG+IP   CNLS  L  LDLS N LSG+
Sbjct: 1291 LIYLELSSNMLQGSLPVPPSSISTYFVENNRFTGKIPPLXCNLS-LLHMLDLSNNTLSGM 1349

Query: 502  LPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNL 561
            +P+CL N  + LS+L+L  N F G IP     G+ LK+IDLS NLL+G +PRSL NC+ L
Sbjct: 1350 IPECLSNLXNSLSVLNLXGNNFHGAIPQAFEVGSKLKMIDLSQNLLEGPVPRSLTNCTVL 1409

Query: 562  EFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRF 621
            E L+LG+NQI D FP WLG LP+L VLIL+SN+FHG I +P+T+  FPKLRIIDLS N F
Sbjct: 1410 ESLNLGNNQISDTFPFWLGALPELQVLILRSNRFHGAIGKPRTNFEFPKLRIIDLSYNSF 1469

Query: 622  TGKLPSMAFQCWNAMKVVNASELRYMQEVIPFN-EGNGIYD---YSLTMSNKGQMMSYKK 677
            +G LPS+ F  W AMK ++A    YMQ    F+ +   +YD   YS+TM+NKG    Y+K
Sbjct: 1470 SGNLPSVYFLDWIAMKSIDADNFTYMQASSGFSTQTYKLYDNYTYSMTMTNKGMERVYEK 1529

Query: 678  IPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSN 737
            IP I  A+  SSN+F GEIPTSI  LKGL +L+ + NSL G IP+ L NLT+LE+LDLS 
Sbjct: 1530 IPGIFRAIDFSSNKFKGEIPTSIGTLKGLHLLNFSXNSLTGRIPTSLRNLTELEALDLSQ 1589

Query: 738  NRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSEC 797
            N   G+IPQQL E+TFL FFNVS N+ TGPIPQ KQF TF   S++GN GLCG PL  +C
Sbjct: 1590 NNLLGEIPQQLTEMTFLGFFNVSHNNLTGPIPQXKQFDTFQSDSYEGNPGLCGNPLIRKC 1649

Query: 798  ----EISEAPTNEDQIEDSEESLLSGVSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFV 853
                + S  P+  +Q +D E    +   D K++L+GY   L+ GV  + G +FT      
Sbjct: 1650 GNPKQASPQPSTSEQGQDLEP---ASXFDRKVVLMGYXSXLVFGV--IIGYIFTTRKHEW 1704

Query: 854  FSLIF 858
            F   F
Sbjct: 1705 FVKTF 1709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/941 (45%), Positives = 554/941 (58%), Gaps = 122/941 (12%)

Query: 2   LWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGV 61
           + PLCH DE  ALLQ KESL+I+ES   D        +PK ASW+  +G + DCCSWDGV
Sbjct: 32  MQPLCHEDESYALLQIKESLVINESASSDP-----SAYPKVASWR-VDGESGDCCSWDGV 85

Query: 62  QCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSL 121
           +C+ ++GHVI LDLSSSCL GSI+S+SSLF+LV L  L LA NDF+ SEIP EI NLS L
Sbjct: 86  ECDGDSGHVIGLDLSSSCLYGSIDSNSSLFRLVLLRRLHLADNDFNKSEIPSEIRNLSRL 145

Query: 122 SYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVL 181
             LNLS + FSGQIP+EILELSKL  LDL  NS    ++L+KP L +L + LTNL+ L L
Sbjct: 146 FDLNLSMSGFSGQIPAEILELSKLVSLDLGVNS----LKLQKPGLQHLVEALTNLEVLHL 201

Query: 182 GDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN--------- 232
             V IS+ +P  +T LSSL++L L  C L+G  P  +  +  L  L +  N         
Sbjct: 202 TGVNISAKVPQIMTNLSSLSSLFLRDCGLQGEFPMGIFQLPNLRFLSIRNNPYLTGYLSE 261

Query: 233 ---------------KLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL 277
                            S +LP  IG L S+KELD+     SG +P+S+GNL  L+ +DL
Sbjct: 262 FQSGSQLEILYLAGTSFSGKLPVSIGNLKSMKELDVAACYFSGVIPSSLGNLTKLDYLDL 321

Query: 278 SLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS 337
           S N F GK+PS+  NL QL  LSL+SN+F  +     GNL +L  +D+ +    G IPSS
Sbjct: 322 SHNSFYGKIPSTFVNLLQLTDLSLSSNNFRSDTLDWLGNLTNLNYVDLTQTNSYGNIPSS 381

Query: 338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRL----------------- 380
           L NLT L+ L    N  +G+  +  ++ NH  L  L+L  N+L                 
Sbjct: 382 LRNLTQLTVLRLHGNKLTGQ--IQSWIGNHTQLISLYLGFNKLHGPIPESIYRLQNLEEL 439

Query: 381 ----------------------SLLTKATSNTTSH-------RFRAVSLCSCDLTEIPKF 411
                                  L     S  TSH       + + +SL  C++ E+P F
Sbjct: 440 DLSNNFFSGSLELNRFRNLNSLLLSYNNLSLLTSHNATFPLPKLQLLSLEGCNIGELPGF 499

Query: 412 LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQH----------- 460
           L++Q+ LE+L++  NK+ G +PKW ++ S      L+L+ N LTGF+Q            
Sbjct: 500 LRDQNQLEILEIGDNKLEGHIPKWFMNMSTITLEALSLAGNLLTGFEQSFDVLPWNNLRS 559

Query: 461 ----------------PNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQ 504
                           P    Y VSNN L GEIP  ICNL++ L  LDLS NNLSG LPQ
Sbjct: 560 LSLNSNKFQGSLPIPPPAIFEYKVSNNKLNGEIPEVICNLTS-LFVLDLSINNLSGKLPQ 618

Query: 505 CLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFL 564
           CLGN S   S+L+L +N FSG IP+    G  L+V+D S N L+G+IP+SLANC+ LE L
Sbjct: 619 CLGNKSSTASVLNLHNNSFSGDIPETFTSGCSLRVVDFSQNKLEGKIPKSLANCTELEIL 678

Query: 565 DLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGK 624
           +L  N I D+FPSWLG LPDL V+IL+SN  HG+I +P+T+  FP+L+I+DLS N F GK
Sbjct: 679 NLEQNNINDVFPSWLGVLPDLRVMILRSNGLHGVIGKPETNVEFPRLQIVDLSNNSFKGK 738

Query: 625 LPSMAFQCWNAMKVVNASELRYMQEVIPF----NEGNGIYDYSLTMSNKGQMMSYKKIPD 680
           LP   F+ W AMK V   +L YMQ    F    N     Y+YS+TM+NKG M  Y+KI D
Sbjct: 739 LPLEYFRNWTAMKNVRNEDLIYMQANTSFLTSHNTMEKQYEYSMTMTNKGVMRLYEKIQD 798

Query: 681 ILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRF 740
            LTA+ LSSN F+G IP  + +LK L +L+L++N L G IP  L NL +LE+LDLS+N+ 
Sbjct: 799 SLTAIDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSGGIPPSLSNLKELEALDLSHNKL 858

Query: 741 SGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEIS 800
           SG+IP QL +LTFL  FNVS N  +G IP+G QF TFD TSFD N GLCG PLS EC   
Sbjct: 859 SGEIPVQLAQLTFLAVFNVSHNFLSGRIPRGNQFETFDNTSFDANPGLCGEPLSKECG-- 916

Query: 801 EAPTNEDQIEDSEESLLSGV---SDWKIILIGYAGGLIVGV 838
                ED +  ++E   SG    S WK+++IGYA GL++GV
Sbjct: 917 ---NGEDSLPAAKEDEGSGSPPESRWKVVVIGYASGLVIGV 954

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140513|ref|XP_002323627.1| predicted protein [Populus trichocarpa] gi|222868257|gb|EEF05388.1| predicted protein [Populus trichocarpa]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/896 (45%), Positives = 535/896 (59%), Gaps = 75/896 (8%)

Query: 2   LWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGV 61
           + PLCH +E  AL+QFKESL+I  S   D        +PK ASW  +  +  DCCSWDGV
Sbjct: 32  MQPLCHDEESHALMQFKESLVIHRSASYDPA-----AYPKVASWSVDRESG-DCCSWDGV 85

Query: 62  QCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSL 121
           +C+ ++GHVI LDLSSSCL GSI+S+SSLF LV L  LDLA NDF+ S+IP EI NLS L
Sbjct: 86  ECDGDSGHVIGLDLSSSCLYGSIDSNSSLFHLVQLRRLDLADNDFNNSKIPSEIRNLSRL 145

Query: 122 SYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLK---- 177
             L+LS ++FSGQIP+EILELSKL  LDL  NS    ++L+KP L +L   L NL+    
Sbjct: 146 FDLDLSYSSFSGQIPAEILELSKLVSLDLGWNS----LKLQKPGLEHLVKALINLRFLSI 201

Query: 178 --------------------ELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSS 217
                                L L   + S  +P ++  L SL    +  C+  G IPSS
Sbjct: 202 QHNPYLSGYFPEIHWGSQLQTLFLAGTSFSGKLPESIGNLKSLKEFDVGDCNFSGVIPSS 261

Query: 218 LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL 277
           LGN+T+L +LDLSFN  S ++P+    L  +  L L  NN      + +GNL +L+ VDL
Sbjct: 262 LGNLTKLNYLDLSFNFFSGKIPSTFVNLLQVSYLSLSFNNFRCGTLDWLGNLTNLKIVDL 321

Query: 278 SLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS 337
                 G +PSSL NLTQL  L+L  N  +G++P+  GN   L +L +   K  G IP S
Sbjct: 322 QGTNSYGNIPSSLRNLTQLTALALHQNKLTGQIPSWIGNHTQLISLYLGVNKLHGPIPES 381

Query: 338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRA 397
           +  L +L  LD + N FSG +DL++ L+  + L  L LS   LSLL    +     +   
Sbjct: 382 IYRLQNLEQLDLASNFFSGTLDLNL-LLKFRNLVSLQLSYTNLSLLNSNNATIPQSKLEL 440

Query: 398 VSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGF 457
           ++L   +L E P FL++Q+HLELLDLA +K++G++PKW ++ S      L L+ N LTGF
Sbjct: 441 LTLSGYNLGEFPSFLRDQNHLELLDLADDKLDGRIPKWFMNMSTITLEALCLTGNLLTGF 500

Query: 458 DQH---------------------------PNTVNYLVSNNSLTGEIPSWICNLSNRLES 490
           +Q                            P    Y V NN LTGEIP  IC+L++ L  
Sbjct: 501 EQSFDVLPWKNLRSLQLYSNKLQGSLPIPPPAIFEYKVWNNKLTGEIPKVICDLTS-LSV 559

Query: 491 LDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGR 550
           L+LS NNLSG LP CLGN S   S+L+L+HN FSG IP+    G  L+V+D S N L+G+
Sbjct: 560 LELSNNNLSGKLPPCLGNKSRTASVLNLRHNSFSGDIPETFTSGCSLRVVDFSQNKLEGK 619

Query: 551 IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPK 610
           IP+SLANC+ LE L+L  N I D+FPSWLG LPDL V+IL+SN  HG+I  P+T+  FP 
Sbjct: 620 IPKSLANCTELEILNLEQNNINDVFPSWLGILPDLRVMILRSNGLHGVIGNPETNVEFPT 679

Query: 611 LRIIDLSKNRFTGKLPSMAFQCWNAMK-VVNASELRYMQEVIPFNEGN----GIYDYSLT 665
           L+I+DLS N F GKLP   F+ W AMK V N   L YMQ    F        G Y+YS+T
Sbjct: 680 LQIVDLSNNSFKGKLPLEYFRNWTAMKNVRNDQHLIYMQANASFQTSQIRMTGKYEYSMT 739

Query: 666 MSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG 725
           M+NKG M  Y+KI D LT + LS N F+G IP  + +LK L +L+L++N L G IP  L 
Sbjct: 740 MTNKGVMRLYEKIQDSLTVIDLSRNGFEGGIPEVLGDLKALHLLNLSNNFLSGGIPPSLS 799

Query: 726 NLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGN 785
           NL  LE+LDLS N+ SG+IP QL +LTFL  FNVS N  +G IP+G QF TFD TSFD N
Sbjct: 800 NLKKLEALDLSQNKLSGEIPVQLAQLTFLAVFNVSHNFLSGRIPRGNQFETFDNTSFDAN 859

Query: 786 SGLCGRPLSSECEISEAPTNEDQIEDSEESLLSGVS---DWKIILIGYAGGLIVGV 838
             LCG PLS EC        ED +  ++E   SG      WK+++IGYA GL++GV
Sbjct: 860 PALCGEPLSKEC----GNNGEDSLPAAKEDEGSGYQLEFGWKVVVIGYASGLVIGV 911

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/957 (44%), Positives = 537/957 (56%), Gaps = 135/957 (14%)

Query: 1   MLWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPE---EGNNIDCCS 57
           M  PLCH  E SALLQFK+S +I E    D        +PK A WK     EG   DCCS
Sbjct: 31  MRQPLCHDSESSALLQFKQSFLIDERASADP-----SAYPKVAMWKSHGEGEGEESDCCS 85

Query: 58  WDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIIN 117
           WDGV+C+  TGHVI L L+SSCL GSINSSS+LF LVHL  LDL+ NDF+ S IP  +  
Sbjct: 86  WDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVHLRRLDLSDNDFNYSVIPFGVGQ 145

Query: 118 LSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLK 177
           LS L  L+LS + FSGQIPS++L LSKL +LDLS N     ++L+KP L NL   LT+LK
Sbjct: 146 LSRLRSLDLSYSRFSGQIPSKLLALSKLVFLDLSANPM---LQLQKPGLRNLVQNLTHLK 202

Query: 178 ELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN----- 232
           +L L  V I S IPH L  LSSLT+L L  C L G  P  +  +  L +L + +N     
Sbjct: 203 KLHLSQVNIFSTIPHELASLSSLTSLFLRECGLHGEFPMKIFQLPSLQYLSVRYNPDLIG 262

Query: 233 -------------------KLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE 273
                                  ELP  IG+L SL ELD+   N +   P+ + ++  L 
Sbjct: 263 YLPEFQETSPLKMLYLAGTSFYGELPASIGSLDSLTELDISSCNFTRLFPSPLAHIPQLS 322

Query: 274 QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS------------------------GE 309
            +DLS N F G++PS + NLTQL +L L+SNDFS                        GE
Sbjct: 323 LLDLSNNSFSGQIPSFMANLTQLTYLDLSSNDFSVGTLAWVGKQTKLTYLYLDQMNLTGE 382

Query: 310 LPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF-LVNHK 368
           +P+S  N+  L  L +   +  GQIPS L NLT L+ L    N   G +   +F LVN +
Sbjct: 383 IPSSLVNMSELTILSLSRNQLIGQIPSWLMNLTQLTELYLEENKLEGPIPSSLFELVNLQ 442

Query: 369 LLY----------------------HLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLT 406
            LY                       L LS NRLSLL+   +N T   F+ + L SC+LT
Sbjct: 443 SLYLHSNYLTGTVELHMLSKLKNLTGLLLSGNRLSLLSYTRTNATLPTFKLLGLGSCNLT 502

Query: 407 EIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQH------ 460
           E P FL+NQ  L +L L+ NKI+G +PKW+ + S +    L LS NFLTGFDQ       
Sbjct: 503 EFPDFLQNQDELVVLSLSDNKIHGPIPKWVWNISKETLEALRLSGNFLTGFDQRPVVLPW 562

Query: 461 ---------------------PNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLS 499
                                P+T+ Y V  N LTGEI   ICN+S+ L+ LDL+ NNLS
Sbjct: 563 SRLYSLQLDFNMLQGPLPIPPPSTILYSVYGNKLTGEISPLICNMSS-LKLLDLARNNLS 621

Query: 500 GLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCS 559
           G +PQCL NFS  LS+LDL  N   G IP      N L+VIDL +N  +G+IPRS ANC 
Sbjct: 622 GRIPQCLANFSKSLSVLDLGSNSLDGPIPQTCTVPNNLRVIDLGENQFRGQIPRSFANCM 681

Query: 560 NLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKN 619
            LE L LG+NQI DIFP WLG LP L VLIL+SN+FHG I    T+  FPKL IIDLS N
Sbjct: 682 MLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRFPKLHIIDLSYN 741

Query: 620 RFTGKLPSMAFQCWNAMKVVNASELRYMQEVI---------PFNEGNGI---YDYSLTMS 667
            FTG LPS  FQ  +AM++++  +L Y +  +          +  G+ +    D  + M 
Sbjct: 742 EFTGNLPSEYFQNLDAMRILDGGQLGYKKANVVQLPIVLRTKYMMGDMVGPRNDTHIKMM 801

Query: 668 NKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNL 727
            KG    YK IP  L  + LSSN+FDGEIP SI  L GL  L+L++N+L G I + L NL
Sbjct: 802 IKGMRREYKNIPYNLMNIDLSSNKFDGEIPESIGGLVGLYSLNLSNNALTGPILTSLANL 861

Query: 728 TDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSG 787
           T LE+LDLS N+  G+IPQQL +LTFL  F+VS NH TGPIPQGKQF TF  +SFDGN G
Sbjct: 862 TQLEALDLSQNKLLGEIPQQLTQLTFLAVFSVSHNHLTGPIPQGKQFNTFSNSSFDGNPG 921

Query: 788 LCGRPLSSEC------EISEAPTNEDQIEDSEESLLSGVSDWKIILIGYAGGLIVGV 838
           LCG PLS  C       ++  P+       S+        DWKI+L+GY  G+++GV
Sbjct: 922 LCGSPLSRVCGSSKGWSLTPPPSTFGNGSPSD-------FDWKIVLMGYGSGIVMGV 971

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/942 (43%), Positives = 545/942 (57%), Gaps = 121/942 (12%)

Query: 2   LWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGV 61
           + PLC+ +E  ALLQFKESL+I+ES    +        PK ASWK  +G + DCCSW+GV
Sbjct: 1   MQPLCNDEESHALLQFKESLVINESASSYS-----SACPKVASWK-VDGESGDCCSWEGV 54

Query: 62  QCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSL 121
           +C+ ++GHVI LDLSSSCL GSI+S+SSLF LV L  L+LA NDF+ S+IP EI NL  L
Sbjct: 55  ECDRDSGHVIGLDLSSSCLHGSIDSNSSLFHLVQLRRLNLADNDFNNSKIPSEIRNLPRL 114

Query: 122 SYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVL 181
             LNLS   F+GQIP+EILELSKL  LDL  NS    ++L+KP L +L + LTNL+ L L
Sbjct: 115 FDLNLSITGFTGQIPAEILELSKLVSLDLGLNS----LKLQKPGLQHLVEALTNLEVLHL 170

Query: 182 GDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN--------- 232
            +V IS+ +P  +T LSSL++L L  C L+G  P  +  +  L  L++ +N         
Sbjct: 171 SEVNISAKVPQVMTNLSSLSSLFLRDCGLQGEFPMGIFQLPNLRFLNIRYNPHLTGYLPE 230

Query: 233 ---------------KLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL 277
                            S +LP  +G L S+KE D+     SG +P+S+GNL  L  +DL
Sbjct: 231 FQLGNQLEKLLLARTSFSGQLPGSLGNLKSMKEFDVAGCYFSGVIPSSLGNLTKLNYLDL 290

Query: 278 SLNRFLGKVPSSLGNLTQ---------------LHWL---------SLASNDFSGELPAS 313
           S N F GK+P S+ NL Q               LHWL          LA  +  GE+P+ 
Sbjct: 291 SSNVFFGKIPRSVVNLLQLTDLSLSSNNFSSGTLHWLCNLTKLNYVDLAQTNSYGEIPSC 350

Query: 314 FGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF---------- 363
            GNL  L  L++   + +GQIPS + N T L  LD   N   G +   IF          
Sbjct: 351 LGNLTQLTELNLDANELTGQIPSWIGNKTQLISLDLGHNKLHGPISESIFWLPNLEILDL 410

Query: 364 ------------LVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLT-EIPK 410
                       L+  + L    LS N LS++     +    + + + L  C+L+ E P 
Sbjct: 411 EENLFSGTVEFGLLKSRSLVSFQLSGNNLSVIGNHNDSAALPKIQILGLGGCNLSGEFPS 470

Query: 411 FLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPN-------- 462
           FL  Q+HLE ++L  NKI G +P W ++   +   HL+L  N LTGF+Q  +        
Sbjct: 471 FLHGQNHLEFVELGGNKIEGHIPTWFMNLGTETLWHLDLIGNLLTGFEQSVDILPWNNLR 530

Query: 463 -------------------TVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP 503
                               + Y+VS+N L GEIP  ICNL++ L  L LS NNLSG LP
Sbjct: 531 YLRLSFNKLDGALPIPPHSIIIYIVSDNHLNGEIPPAICNLTS-LVILQLSNNNLSGKLP 589

Query: 504 QCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEF 563
           QCLGN S+  S+LDL++N FSG IP+    G  L+ ID S N L+G+IP+SLANC+ LE 
Sbjct: 590 QCLGNISNTASVLDLRNNTFSGDIPEAFSSGCTLRAIDFSQNQLEGKIPKSLANCTKLEI 649

Query: 564 LDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTG 623
           L++  N+I D+FPSWLG LP L VLIL+SN+ HG+I +PK +  F +L+I+DLS N F G
Sbjct: 650 LNIEQNKITDVFPSWLGILPKLRVLILRSNRLHGVIGKPKANFEFQRLQIVDLSGNCFLG 709

Query: 624 KLPSMAFQCWNAMKVVNASELRYMQEV----IPFNEGNGIYDYSLTMSNKGQMMSYKKIP 679
            LP   F+ W+AMK +      YMQ V    +P       +DYS+TM+NKG M  Y+KI 
Sbjct: 710 NLPLEYFRNWSAMKTIYKERPLYMQVVSSFQLPRYGMTYHFDYSMTMTNKGVMTLYEKIQ 769

Query: 680 DILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNR 739
           + LTA+ LSSNRF+G IP ++ +LK L +L+L++N L G IP  L NL  LE+LDLS N+
Sbjct: 770 EFLTAIDLSSNRFEGGIPDALGDLKELYLLNLSNNFLTGRIPPSLSNLKGLEALDLSQNK 829

Query: 740 FSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEI 799
            SG+IP QL +LTFL  FNVS N  +GPIP+G QF TFD TSFD +SGLCG+PLS +C  
Sbjct: 830 LSGEIPVQLAQLTFLAVFNVSHNLLSGPIPRGNQFETFDSTSFDADSGLCGKPLSKKCG- 888

Query: 800 SEAPTNEDQIEDSEESLLSGVS---DWKIILIGYAGGLIVGV 838
               + ED +   +E   SG      W +++IGYA GL+ G 
Sbjct: 889 ----SGEDSLPAPKEDEGSGSPLEFGWTVVVIGYASGLVTGA 926

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766212|emb|CAN63381.1| hypothetical protein VITISV_018438 [Vitis vinifera]

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/900 (45%), Positives = 517/900 (57%), Gaps = 75/900 (8%)

Query: 1   MLWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPE-EGNNIDCCSWD 59
           M  PLCH  E SALLQFK+S +I      D        +PK A WK   EG   DCCSWD
Sbjct: 31  MQQPLCHDSESSALLQFKQSFLIDGHASGDP-----SAYPKVAMWKSHGEGEGSDCCSWD 85

Query: 60  GVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIP-----PE 114
           GV+C+  TGHVI L L+SSCL GSINSS++LF LVHL  LDL+ N F+ SEIP     P 
Sbjct: 86  GVECDRETGHVIGLHLASSCLYGSINSSNTLFSLVHLRRLDLSXNXFNYSEIPFXLQKPX 145

Query: 115 IINL----SSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVEL---RKPSLG 167
           + NL    + L  L+LS    S  IP E+  LS L  L L     +    +   + PSL 
Sbjct: 146 LRNLVQNXAHLKKLHLSEVNISSTIPHELANLSSLTTLFLRECGLHGEFPMNIFQLPSLK 205

Query: 168 NLA--------------DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGR 213
            L+               + + LKEL L   + S  +P ++  L SLT L +S C+  G 
Sbjct: 206 ILSVSYNPDLIGYLPEFQETSPLKELHLYGTSFSGELPTSIGRLGSLTELDISSCNFTGL 265

Query: 214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE 273
           +PS+LG++ +L  LDLS N  S  +P+ +  L  L  L L  NN S      +G    L 
Sbjct: 266 VPSTLGHLPQLSSLDLSNNSFSGLIPSSMANLTQLTFLVLSFNNFSIGTLAWLGEQTKLT 325

Query: 274 QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQ 333
            + L     +G++P SL N++QL  L+LA N  SG++P+   NL  L  LD+      G 
Sbjct: 326 ALHLRQINLIGEIPFSLVNMSQLTTLTLADNQLSGQIPSWLMNLTQLTVLDLGANNLEGG 385

Query: 334 IPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSH 393
           IPSSL  L +L  L    N+ +G ++L++ L+  K L    LS NRLSLL    +N T  
Sbjct: 386 IPSSLFELVNLQSLSVGGNSLNGTVELNM-LLKLKNLTSFQLSGNRLSLLGYTRTNVTLP 444

Query: 394 RFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNF 453
           +F+ + L SC+LTE P FL+NQ  L +L LA+NKI+G +PKW+ + S +N G L+LS N 
Sbjct: 445 KFKLLGLDSCNLTEFPDFLRNQDELAVLSLANNKIHGLIPKWIWNISQENLGTLDLSXNL 504

Query: 454 LTGFDQHPNTV----------------------------NYLVSNNSLTGEIPSWICNLS 485
           LT FD HP  +                             Y VS N L GEI   ICN+S
Sbjct: 505 LTXFDXHPVVLPWSRLSILMLDSNMLQGPLPIPPPSTXEYYSVSRNKLIGEISPLICNMS 564

Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDN 545
           + L  LDLS NNLSG +PQCL N S  LS+LDL  N   G IP      N L+VIDL +N
Sbjct: 565 S-LMILDLSSNNLSGRIPQCLANLSKSLSVLDLGSNSLDGPIPQTCTVTNNLRVIDLGEN 623

Query: 546 LLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTD 605
             QG+IPRS ANC  LE L LG+NQI DIFP WLG LP L VLIL+SN FHG I     +
Sbjct: 624 QFQGQIPRSFANCMMLEHLVLGNNQIBDIFPFWLGALPQLQVLILRSNXFHGAIGSWHXN 683

Query: 606 CGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVN-ASELRYMQEVIPFNE----GNGIY 660
             FPKLRI+DLS N+F G LPS  FQ W+AMK+ + A++LRYMQ    F +      G Y
Sbjct: 684 FRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLTDIANDLRYMQARXEFXBLGYTWTGHY 743

Query: 661 DYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHI 720
            YSLTM NKG    Y+KIPDI  A+  S N F G+IP S  NLKGL +L+L DN+L GHI
Sbjct: 744 LYSLTMXNKGMQRFYEKIPDIFIAIDFSGNNFKGQIPISTGNLKGLHLLNLGDNNLTGHI 803

Query: 721 PSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKT 780
           PS LGNL  LESLDLS N+ SG+IP QL  +TFL FFNVS NH TG IPQG QF TF   
Sbjct: 804 PSSLGNLPRLESLDLSQNQLSGEIPLQLTRITFLAFFNVSHNHLTGTIPQGNQFTTFPNA 863

Query: 781 SFDGNSGLCGRPLSSECEISEA--PTNEDQIEDSEESLLSGVSDWKIILIGYAGGLIVGV 838
           SFDGN GLCG  LS  C   EA  P++  +   + E       DWK +L+GY  GL++GV
Sbjct: 864 SFDGNPGLCGSTLSRACGSFEASPPSSSSKQGSTSE------FDWKFVLMGYGSGLVIGV 917

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	930
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.878	0.933	0.361	9.6e-128
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.803	0.780	0.373	3.7e-119
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.804	0.793	0.359	9.4e-114
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.811	0.844	0.359	2.6e-111
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.815	0.771	0.351	6.1e-110
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.619	0.810	0.415	2.4e-108
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.877	0.915	0.347	8.1e-108
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.737	0.790	0.369	1.2e-104
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.745	0.935	0.375	5.3e-104
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.852	0.891	0.342	3e-101

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
 Identities = 312/864 (36%), Positives = 467/864 (54%)

Query:    14 LLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKL 73
             L  F++   + E K    +  P F  P     K  E N  DCC WDG+ C+  TG VI++
Sbjct:    29 LCHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSWE-NGSDCCHWDGITCDAKTGEVIEI 87

Query:    74 DLSSSCLQGSINSSSSLFKL--VH-LEWLDLAFNDFDGSEIPPEIIXXXXXXXXXXXXAA 130
             DL  SCL G  +S+S+L  L   H L  LDL++N   G +I   I               
Sbjct:    88 DLMCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYNHLSG-QISSSIGNLSHLTTLDLSGNN 146

Query:   131 FSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPI 190
             FSG IPS +  L  L  L L  N++   +     SLGNL+  LT L    L        I
Sbjct:   147 FSGWIPSSLGNLFHLTSLHLYDNNFGGEIP---SSLGNLS-YLTFLD---LSTNNFVGEI 199

Query:   191 PHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE 250
             P +                L G +P  + N+T+L  + LS N+ +  LP  I +L  L+ 
Sbjct:   200 PSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNITSLSILES 259

Query:   251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVP-SSLGNLTQLHWLSLASNDFSGE 309
                  NN  G +P+S+  + S+  + L  N+  G +   ++ + + L  L L  N+  G 
Sbjct:   260 FSASGNNFVGTIPSSLFTIPSITLIFLDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGP 319

Query:   310 LPASFGNLRSLRTLDVYECKFSGQIPSSL-SNLTHLSFLDFSLNNFSGKMDLDIFLVNHK 368
             +P S   L +LRTLD+      GQ+  ++ S+L  L  L  S +N +  +DL+  L   K
Sbjct:   320 IPTSISRLVNLRTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFK 379

Query:   369 LLYHLFLSTNRLSLLTKAT-SNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNK 427
             +L  L LS N + +  K++ S+       +++L  C +TE P  L+ Q  +  LD+++NK
Sbjct:   380 MLISLDLSGNHVLVTNKSSVSDPPLGLIGSLNLSGCGITEFPDILRTQRQMRTLDISNNK 439

Query:   428 INGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQH----------PNTVNYLVSNNSLTGEI 477
             I G+VP WLL   +Q   ++++S+N   GF++           P+  ++  SNN+ +G+I
Sbjct:   440 IKGQVPSWLL---LQ-LEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKI 495

Query:   478 PSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNIL 537
             PS+IC+L + L  LDLS NN SG +P C+G F   LS L+L+ N+ SG++P  ++K   L
Sbjct:   496 PSFICSLRS-LIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKS--L 552

Query:   538 KVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHG 597
             + +D+S N L+G++PRSL + S LE L++  N+I D FP WL +L  L VL+L+SN FHG
Sbjct:   553 RSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHG 612

Query:   598 LIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGN 657
              I + +    FPKLRIID+S+N F G LPS  F  W  M  +  +E R+ ++ +    G+
Sbjct:   613 RIHKTR----FPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYM----GS 664

Query:   658 GIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLH 717
             G Y  S+ + NKG  M   +I  I TA+  S N+F+GEIP SI  LK L IL+L+ N   
Sbjct:   665 GYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFT 724

Query:   718 GHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATF 777
             GHIPS +GNL +LESLD+S N+ SG+IPQ+L  L++L + N S N   G +P G QF T 
Sbjct:   725 GHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQ 784

Query:   778 DKTSFDGNSGLCGRPLSSECEISEAPTNEDQIEDSE-ESLLSGVSDWKIILIGYAGGLIV 836
               +SF+ N GLCGRPL  EC +   PT   + E  E E +LS    W    IG+  G+++
Sbjct:   785 SASSFEENLGLCGRPLE-ECRVVHEPTPSGESETLESEQVLS----WIAAAIGFTPGIVL 839

Query:   837 GVEAMGGSLFTISMQFVFSLIFFN 860
             G+  +G  + +   ++ F +++ N
Sbjct:   840 GL-TIGHIVLSSKPRWFFKVLYIN 862

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
 Identities = 293/785 (37%), Positives = 434/785 (55%)

Query:    66 NTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIIXXXXXXXXX 125
             N   +  L+L  +   G   + SS+  L HL +LDL++N F G + P  I          
Sbjct:   167 NLSRLTYLNLFDNQFSGQ--APSSICNLSHLTFLDLSYNRFFG-QFPSSIGGLSHLTTLS 223

Query:   126 XXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPS-LGNLADKLTNLKELVLGDV 184
                  FSGQIPS I  LS L  LDLS+N++   +    PS +GNL+ +LT L    L   
Sbjct:   224 LFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQI----PSFIGNLS-QLTFLG---LFSN 275

Query:   185 TISSPIPHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGT 244
                  IP +                L G  P+ L N+T L  L LS NK +  LP  I +
Sbjct:   276 NFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNITS 335

Query:   245 LGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVP-SSLGNLTQLHWLSLAS 303
             L +L + D   N  +G  P+ +  + SL  + L+ N+  G +   ++ + + L+ L + +
Sbjct:   336 LSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTLEFGNISSPSNLYELDIGN 395

Query:   304 NDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHL-SFLDFSLN--NFSGKMDL 360
             N+F G +P+S   L  L  LD+      G  P   S  +HL S LD +++  N + ++DL
Sbjct:   396 NNFIGPIPSSISKLVKLFRLDISHLNTQG--PVDFSIFSHLKSLLDLNISHLNTTTRIDL 453

Query:   361 DIFLVNHKLLYHLFLSTNRLSLLTKAT-SNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLE 419
             + FL   K L  L LS N +S   K++ S+  S   +++ L  C +TE P+F++ QH L 
Sbjct:   454 NYFLSYFKRLLLLDLSGNHVSATNKSSVSDPPSQLIQSLYLSGCGITEFPEFVRTQHELG 513

Query:   420 LLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQ----HPNTVNYLVSNNSLTG 475
              LD+++NKI G+VP WL    +    ++NLS+N L GF +     P+ +  L SNN+  G
Sbjct:   514 FLDISNNKIKGQVPDWLW--RLPILYYVNLSNNTLIGFQRPSKPEPSLLYLLGSNNNFIG 571

Query:   476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGN 535
             +IPS+IC L + L +LDLS NN +G +P+C+G+    LS+L+L+ N  SG +P  + +  
Sbjct:   572 KIPSFICGLRS-LNTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQIFE-- 628

Query:   536 ILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKF 595
             IL+ +D+  N L G++PRSL+  S LE L++  N+I D FP WL +LP L VL+L+SN F
Sbjct:   629 ILRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAF 688

Query:   596 HGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNE 655
             HG I E      FP+LRIID+S NRF G LP+  F  W+AM  +  +E +  ++ +    
Sbjct:   689 HGPIHEAT----FPELRIIDISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYM---- 740

Query:   656 GNGIY-DYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADN 714
             G+G+Y   S+ + NKG  M   +I  I TAV  S NRF+GEIP SI  LK L +LSL++N
Sbjct:   741 GSGLYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNN 800

Query:   715 SLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQF 774
             +  GH+PS +GNLT LESLD+S N+ +G+IPQ+L +L+FL + N S N   G +P G+QF
Sbjct:   801 AFSGHMPSSMGNLTALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGQQF 860

Query:   775 ATFDKTSFDGNSGLCGRPLSSECEISEAPTNEDQIEDSE-ESLLSGVSDWKIILIGYAGG 833
              T + ++F+ N GL G  L   C     P +  Q E  E E     +  W    IG+  G
Sbjct:   861 LTQNCSAFEDNLGLFGSSLEEVCRDIHTPASHQQFETPETEEEDEDLISWIAAAIGFGPG 920

Query:   834 LIVGV 838
             +  G+
Sbjct:   921 IAFGL 925

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
 Identities = 284/791 (35%), Positives = 428/791 (54%)

Query:    66 NTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIIXXXXXXXXX 125
             N  H+  L LS +   G I   SS+  L  L  L L+ N F G +IP  I          
Sbjct:   147 NLSHLTSLHLSYNQFLGLI--PSSIENLSRLTSLHLSSNQFSG-QIPSSIGNLSHLTSLE 203

Query:   126 XXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVT 185
                  FSGQIPS I  LS L +L L  N ++  +     S+GNLA +LT L    L    
Sbjct:   204 LSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIP---SSIGNLA-RLTYL---YLSYNN 256

Query:   186 ISSPIPHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTL 245
                 IP +                L G +P SL N+TRL  L LS N+ +  +P  I  L
Sbjct:   257 FVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQFTGTIPNNISLL 316

Query:   246 GSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVP-SSLGNLTQLHWLSLASN 304
              +L + +   N  +G LP+S+ N+  L ++DLS N+  G +   ++ + + L +L + SN
Sbjct:   317 SNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDNQLNGTLHFGNISSPSNLQYLIIGSN 376

Query:   305 DFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLD-FSLNNFSGK-MDLDI 362
             +F G +P S     +L   D+       + P   S  +HL  LD   L+  +   +DL+ 
Sbjct:   377 NFIGTIPRSLSRFVNLTLFDLSHLNTQCR-PVDFSIFSHLKSLDDLRLSYLTTTTIDLND 435

Query:   363 FLVNHKLLYHLFLSTNRLSLLTKAT--SNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLEL 420
              L   K L  L +S N +S   K++  S+  S   +++ L  C +T+ P+ L+ QH L  
Sbjct:   436 ILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQSLYLSGCGITDFPEILRTQHELGF 495

Query:   421 LDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFD----QH-------PNTVNYLVS 469
             LD+++NKI G+VP WL   ++ N  +LNLS+N    F+    +H       P+ ++   S
Sbjct:   496 LDVSNNKIKGQVPGWLW--TLPNLFYLNLSNNTFISFESSSKKHGLSSVRKPSMIHLFAS 553

Query:   470 NNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD 529
             NN+ TG+IPS+IC L + L +LDLS NN +G +P+C+      L +L+L+ N  SG +P 
Sbjct:   554 NNNFTGKIPSFICGLRS-LNTLDLSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPK 612

Query:   530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLI 589
             ++ +   L+ +D+  NLL G++PRSL   SNLE L++  N+I D FP WL +L  L VL+
Sbjct:   613 HIFES--LRSLDVGHNLLVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLV 670

Query:   590 LKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQE 649
             L+SN FHG I E      FP+LRIID+S N F G LP+  F  W+AM  +  +E +  ++
Sbjct:   671 LRSNAFHGPIHEAT----FPELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEK 726

Query:   650 VIPFNEGNGIY-DYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQI 708
              +    G+G+Y   S+ + NKG  M   +I  I TA+  S N+F+GEIP SI  LK L +
Sbjct:   727 YM----GSGLYYQDSMVLMNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLV 782

Query:   709 LSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPI 768
             L+L++N+  GHIPS +GNLT LESLD+S N+ +G+IPQ+L +L+FL + N S N   G +
Sbjct:   783 LNLSNNAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLV 842

Query:   769 PQGKQFATFDKTSFDGNSGLCGRPLSSECEISEAPTNE-DQIEDSEESLLSGVSDWKIIL 827
             P G QF   + ++F+ N GL G  L   C     P ++ ++  ++EE     +S W    
Sbjct:   843 PGGTQFRRQNCSAFENNLGLFGPSLDEVCRDKHTPASQQNETTETEEEDEEEIS-WIAAA 901

Query:   828 IGYAGGLIVGV 838
             IG+  G++ G+
Sbjct:   902 IGFIPGIVFGL 912

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
 Identities = 289/803 (35%), Positives = 423/803 (52%)

Query:    65 ENTGHVIKLDLSSSCLQGSI-NSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIIXXXXXXX 123
             EN  H+  LDLS +   G I NS  +L +L  L   DL+FN F G +IP  I        
Sbjct:    79 ENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSL---DLSFNQFSG-QIPSSIGNLSHLTF 134

Query:   124 XXXXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD------------ 171
                    F GQIPS I  LS L +L LS N ++         L NL +            
Sbjct:   135 LGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLSNLTNLHLSYNKYSGQI 194

Query:   172 --KLTNLKELVLGDVTISS---PIPHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIH 226
                + NL +L++  +++++    IP +                L G  P+ L N+T L  
Sbjct:   195 PSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFPNVLLNLTGLSV 254

Query:   227 LDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKV 286
             + LS NK +  LP  I +L +L       N  +G  P+ +  + SL  + LS N+  G +
Sbjct:   255 VSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLFIIPSLTYLGLSGNQLKGTL 314

Query:   287 P-SSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLS 345
                ++ + + L +L++ SN+F G +P+S   L +L+ L +       + P   S  +HL 
Sbjct:   315 EFGNISSPSNLQYLNIGSNNFIGPIPSSISKLINLQELGISHLNTQCR-PVDFSIFSHLK 373

Query:   346 FLD-FSLNNFSGK-MDLDIFLVNHKLLYHLFLSTNRLSLLTKAT--SNTTSHRFRAVSLC 401
              LD   L+  +   +DL+  L   K L  L LS N +S   K++  S+  S   +++ L 
Sbjct:   374 SLDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATNKSSVSSDPPSQSIQSLYLS 433

Query:   402 SCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQ-- 459
              C +T+ P+ L+ QH L  LD+++NKI G+VP WL   ++ N  +LNLS+N   GF +  
Sbjct:   434 GCGITDFPEILRTQHELGFLDVSNNKIKGQVPGWLW--TLPNLFYLNLSNNTFIGFQRPT 491

Query:   460 --HPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILD 517
                P+    L SNN+ TG+IPS+IC L + L +LDLS NN SG +P+C+ N    LS L+
Sbjct:   492 KPEPSMAYLLGSNNNFTGKIPSFICELRS-LYTLDLSDNNFSGSIPRCMENLKSNLSELN 550

Query:   518 LQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPS 577
             L+ N  SG  P+++ +   L+ +D+  N L G++PRSL   SNLE L++  N+I D+FP 
Sbjct:   551 LRQNNLSGGFPEHIFES--LRSLDVGHNQLVGKLPRSLRFFSNLEVLNVESNRINDMFPF 608

Query:   578 WLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMK 637
             WL +L  L VL+L+SN FHG I +      FPKLRIID+S N F G LP+  F  W+ M 
Sbjct:   609 WLSSLQKLQVLVLRSNAFHGPINQAL----FPKLRIIDISHNHFNGSLPTEYFVEWSRM- 663

Query:   638 VVNASELRYMQEVIPFNE-GNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEI 696
                 S L   ++    N  G+G Y  S+ + NKG      +I  I TAV  S N+F+GEI
Sbjct:   664 ----SSLGTYEDGSNVNYLGSGYYQDSMVLMNKGVESELVRILTIYTAVDFSGNKFEGEI 719

Query:   697 PTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEF 756
             P SI  LK L +L+L++N+  GHIPS +GNLT LESLD+S N+  G+IPQ++  L+ L +
Sbjct:   720 PKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLLSY 779

Query:   757 FNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISEAPTNEDQIEDSE-ES 815
              N S N  TG +P G+QF T   +SF+GN GL G  L   C     P +  Q E  + E 
Sbjct:   780 MNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEVCRDIHTPASHQQFETPQTEE 839

Query:   816 LLSGVSDWKIILIGYAGGLIVGV 838
                 +  W    IG+  G+  G+
Sbjct:   840 EDEDLISWIAAAIGFGPGIAFGL 862

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
 Identities = 280/797 (35%), Positives = 432/797 (54%)

Query:    69 HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIIXXXXXXXXXXXX 128
             H+   +LS +   G +   SS+  L +L  L L+ N F G E+P  +             
Sbjct:   185 HLTSFNLSYNNFSGRV--PSSIGNLSYLTTLRLSRNSFFG-ELPSSLGSLFHLTDLILDT 241

Query:   129 AAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISS 188
               F G+IPS +  LS L  +DL  N++   +     SLGNL+     L   +L D  I  
Sbjct:   242 NHFVGKIPSSLGNLSHLTSIDLHKNNFVGEIPF---SLGNLSC----LTSFILSDNNIVG 294

Query:   189 PIPHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL 248
              IP +                L G  P +L N+ +L  L L  N+L+  LP+ + +L +L
Sbjct:   295 EIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLRKLSTLSLFNNRLTGTLPSNMSSLSNL 354

Query:   249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVP-SSLGNLTQLHWLSLASNDFS 307
             K  D  +N+ +G LP+S+ N+ SL+ + L  N+  G +   ++ + + L  L L +N+F 
Sbjct:   355 KLFDATENHFTGPLPSSLFNIPSLKTITLENNQLNGSLGFGNISSYSNLTVLRLGNNNFR 414

Query:   308 GELPASFGNLRSLRTLDVYECKFSGQIPSSL-SNLTHLSFLDFSLNNFSGKMDLDIFLVN 366
             G +  S   L +L+ LD+      G +  ++ S+L  + +L+ S  N +  +D+   L +
Sbjct:   415 GPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHLKSIEYLNLSHLNTTTTIDMYEILSS 474

Query:   367 HKLLYHLFLSTNRLSLLTKAT-SNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLAS 425
              KLL  L LS + +S   K++ SN++      + L  C +TE PKFL++Q  +  LD+++
Sbjct:   475 FKLLDTLDLSGSHVSTTNKSSLSNSSLVLISQLYLSGCGITEFPKFLRSQELMLTLDISN 534

Query:   426 NKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFD----------QHPNTVNYLV-SNNSLT 474
             NKI G+VP WL    + N+  +NLS+N   GF+          Q P  +  L  SNN+ T
Sbjct:   535 NKIKGQVPGWLWMLPVLNY--VNLSNNTFIGFERSTKLGLTSIQEPPAMRQLFCSNNNFT 592

Query:   475 GEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNF-SDWLSILDLQHNKFSGTIPDNLLK 533
             G IPS+IC L   L +LD S N  +G +P C+GN  S +L  L+L+HN+ SG +P+N+ +
Sbjct:   593 GNIPSFICELPY-LSTLDFSNNKFNGSIPTCMGNIQSPYLQALNLRHNRLSGLLPENIFE 651

Query:   534 GNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSN 593
               I   +D+  N L G++PRSL++ S+L  L++  N+I D FP WL +L +L VL+L+SN
Sbjct:   652 SLIS--LDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDTFPLWLSSLQELQVLVLRSN 709

Query:   594 KFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIP- 652
              F+G I   KT   F KLRIID+S N+F G LP+  F  W AM  ++ +E +   E +  
Sbjct:   710 AFYGPIE--KTQ--FSKLRIIDISGNQFNGTLPANFFVNWTAMFSLDENEDQSNGETMSN 765

Query:   653 -FNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSL 711
              +   +  Y  S+ + NKG  M  +++  + T +  S N+F+GEIP SI  LK L +L+L
Sbjct:   766 MYMSTDYFYFDSMVLMNKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELHVLNL 825

Query:   712 ADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG 771
             ++N+L GHI S +GNL  LESLD+S N+ SG+IPQ+L +LT+L + N S N   G +P G
Sbjct:   826 SNNALSGHIASSMGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNFSHNQLVGLLPGG 885

Query:   772 KQFATFDKTSFDGNSGLCGRPLSSECEI-SEAPTNEDQIEDSEESLLSGVSDWKIILIGY 830
              QF T   +SF+ N GL G  L   C+I  + P   D   + EE     +S W   +IG+
Sbjct:   886 TQFQTQKCSSFEDNHGLYGPSLEKICDIHGKTPQQSDMAPEPEEDEEEVIS-WIAAVIGF 944

Query:   831 AGGLIVGVEAMGGSLFT 847
               G  +G+   G  LF+
Sbjct:   945 ILGTALGL-TFGCILFS 960

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
 Identities = 250/602 (41%), Positives = 358/602 (59%)

Query:   246 GSLKELDLLQNNLSGELPN--SIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLAS 303
             G + ELDL  + L G   +  SI NL  L  +DLS N F G++ SS+ NL+ L +L L+ 
Sbjct:    95 GEVIELDLSCSYLHGRFHSNSSIRNLHFLTTLDLSFNDFKGQIMSSIENLSHLTYLDLSF 154

Query:   304 NDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
             N FSG++P+S GNL  L  LD+Y  +FSGQ+PSS+ NL+HL+ L+ S N F G+    I 
Sbjct:   155 NHFSGQVPSSIGNLSHLTFLDLYCNQFSGQVPSSIGNLSHLTTLELSFNRFFGQFPSSIG 214

Query:   364 LVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLT-EIPKFLKNQHHLELLD 422
              ++H    +LF++ N L  +  +  N ++    ++ LC  + + +IP F+ N   L  LD
Sbjct:   215 GLSHLTTLNLFVN-NFLGQIPSSIGNLSN--LTSLYLCKNNFSGQIPSFIGNLSQLTRLD 271

Query:   423 LASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPN----TVNYLV-SNNSLTGEI 477
             L+SN   G++P WL   ++ N  ++NLS+N   GF Q PN    ++ +L+ SNN+ TG+I
Sbjct:   272 LSSNNFFGEIPGWLW--TLPNLFYVNLSYNTFIGF-QRPNKPEPSMGHLLGSNNNFTGKI 328

Query:   478 PSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNIL 537
             PS+IC L + LE+LDLS NN SGL+P+C+GN    LS L+L+ N  SG +P ++ +  IL
Sbjct:   329 PSFICELRS-LETLDLSDNNFSGLIPRCMGNLKSNLSHLNLRQNNLSGGLPKHIFE--IL 385

Query:   538 KVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHG 597
             + +D+  N L G++PRSL   S LE L++  N+I D FP WL +LP L VL+L+SN FHG
Sbjct:   386 RSLDVGHNQLVGKLPRSLRFFSTLEVLNVESNRINDTFPFWLTSLPKLQVLVLRSNAFHG 445

Query:   598 LIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGN 657
              I E      F KLRIID+S N F G LPS  F  W+AM  +   E R     +    G+
Sbjct:   446 PIHE----ASFLKLRIIDISHNHFNGTLPSDYFVKWSAMSSLGTDEDRSNANYM----GS 497

Query:   658 GIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLH 717
               Y  S+ + NKG      +I  I TA+  S N+F+GEIP SI  LK L +L+L++N+  
Sbjct:   498 VYYQDSMVLMNKGVESELIRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFT 557

Query:   718 GHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATF 777
             GHIPS +G LT LESLD+S N+  G+IPQ++  L+FL   N S N   G +P G+QF T 
Sbjct:   558 GHIPSSMGKLTALESLDVSQNKLYGEIPQEIGNLSFLSCMNFSHNQLAGLVPGGQQFLTQ 617

Query:   778 DKTSFDGNSGLCGRPLSSECEISEAPTNEDQIEDSE-ESLLSGVSDWKIILIGYAGGLIV 836
               +SF+ N GL G  L  +C     P +  Q +  E E     V  W    IG+  G+++
Sbjct:   618 PCSSFEDNLGLFGSTLEEDCRDIHTPASHQQYKTPETEEEDEEVISWIAAAIGFIPGIVL 677

Query:   837 GV 838
             G+
Sbjct:   678 GL 679

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
 Identities = 314/904 (34%), Positives = 469/904 (51%)

Query:     5 LCHGDERSALLQFKESLIISESKEIDTL-----------------YGPIFCHPKAASWKP 47
             LC  D+R ALL+FK    I  S + D +                 +G I C PK      
Sbjct:    25 LCLPDQRDALLEFKNEFSIP-SPDSDLMLILQTTAKWRNNTDCCSWGGISCDPKTGVVVE 83

Query:    48 EEGNNIDCCSWDG-VQCNENT---GHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAF 103
              +  N D    +G ++ N +     H+  LDLS + L  ++  SS  FK  +L  L+L  
Sbjct:    84 LDLGNSDL---NGRLRSNSSLFRLQHLQSLDLSYNDLSCTLPDSSGNFK--YLRVLNLLG 138

Query:   104 NDFDGSEIPPEIIXXXXXXXXXXXXAAFSGQIPSEILE----LSKLAYLDLSHNSYYDPV 159
              +  G EIP  +              +++  +  EIL+    L  L  L L+   +   +
Sbjct:   139 CNLFG-EIPTSL---RSLSYLTDLDLSYNDDLTGEILDSMGNLKHLRVLSLTSCKFTGKI 194

Query:   160 ELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNXXXXXXXXXXXXXGCDLRGRIPSSLG 219
                  SLGNL    T L +L L     +  +P +              C+  G+IP+SLG
Sbjct:   195 P---SSLGNL----TYLTDLDLSWNYFTGELPDSMGNLKSLRVLNLHRCNFFGKIPTSLG 247

Query:   220 NITRLIHLDLSFNKLSDELPTFIGTLG-------------SLKELDLLQNNLSGELPNSI 266
             +++ L  LD+S N+ + E P  + +L              SL  +DL  N     LP+++
Sbjct:   248 SLSNLTDLDISKNEFTSEGPDSMSSLNRLTDFQLMLLNLSSLTNVDLSSNQFKAMLPSNM 307

Query:   267 GNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRS---LRTL 323
              +L+ LE  D+S N F G +PSSL  L  L  L L +NDFSG  P   GN+ S   L+ L
Sbjct:   308 SSLSKLEAFDISGNSFSGTIPSSLFMLPSLIKLDLGTNDFSG--PLKIGNISSPSNLQEL 365

Query:   324 DVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLL 383
              + E   +G IP S+  L  LS L  S  +  G +D  IFL   K L  L LS   L++ 
Sbjct:   366 YIGENNINGPIPRSILKLVGLSALSLSFWDTGGIVDFSIFL-QLKSLRSLDLSGINLNI- 423

Query:   384 TKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLD-PSMQ 442
               ++ +  SH    + L SC++++ PKFL+NQ  L  LD+++N+I G+VP+WL   P+++
Sbjct:   424 -SSSHHLPSHMMHLI-LSSCNISQFPKFLENQTSLYHLDISANQIEGQVPEWLWRLPTLR 481

Query:   443 NFGHLNLSHNFLTG-FDQHPNTV-NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSG 500
                ++N++ N  +G     PN + +++ S+N  +GEIP  +C +     +L LS NN SG
Sbjct:   482 ---YVNIAQNAFSGELTMLPNPIYSFIASDNKFSGEIPRAVCEIG----TLVLSNNNFSG 534

Query:   501 LLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSN 560
              +P C    +  LSIL L++N  SG IP+  L G  L+ +D+  N L G+ P+SL NCS 
Sbjct:   535 SIPPCFEISNKTLSILHLRNNSLSGVIPEESLHG-YLRSLDVGSNRLSGQFPKSLINCSY 593

Query:   561 LEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNR 620
             L+FL++ +N+I D FPSWL +LP+L +L+L+SN+FHG I  P     F KLR  D+S+NR
Sbjct:   594 LQFLNVEENRINDTFPSWLKSLPNLQLLVLRSNEFHGPIFSPGDSLSFSKLRFFDISENR 653

Query:   621 FTGKLPSMAFQCWNAMK-VVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIP 679
             F+G LPS  F  W+ M   V+  +      V+  ++ +  +  S+ ++ KG  M      
Sbjct:   654 FSGVLPSDYFVGWSVMSSFVDIIDNTPGFTVVGDDQES--FHKSVVLTIKGLNMELVGSG 711

Query:   680 -DILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNN 738
              +I   + +S NR +G+IP SI  LK L +L++++N+  GHIP  L NL++L+SLDLS N
Sbjct:   712 FEIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQN 771

Query:   739 RFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECE 798
             R SG IP +L ELTFL   N S N   GPIPQG Q  + + +SF  N GLCG PL  +C 
Sbjct:   772 RLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGLCGAPLQKKCG 831

Query:   799 ISEAPTNEDQIEDSEESLLSGVSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFVFSLIF 858
               E    ED+ ++ ++  LS    W    IGY  GL  G+ A+G  L +    + F  IF
Sbjct:   832 GEE---EEDKEKEEKDKGLS----WVAAAIGYVPGLFCGL-AIGHILTSYKRDW-FMRIF 882

Query:   859 FNFT 862
               F+
Sbjct:   883 SCFS 886

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
 Identities = 268/726 (36%), Positives = 399/726 (54%)

Query:   131 FSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPI 190
             FSGQIPS I   S L  LDLS N +   +     S+GNL+ +LT L +L   +     P 
Sbjct:   131 FSGQIPSCIENFSHLTTLDLSKNYFSGGIP---SSIGNLS-QLTFL-DLSGNEFVGEMPF 185

Query:   191 PHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE 250
               N               DL G  P SL N+  L  L LS N+ +  LP+ + +L +L+ 
Sbjct:   186 FGNMNQLTNLYVDSN---DLTGIFPLSLLNLKHLSDLSLSRNQFTGTLPSNMSSLSNLEY 242

Query:   251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVP-SSLGNLTQLHWLSLASNDFSGE 309
              +   N  +G LP+S+  +ASL  ++L  N+  G +   ++ + + L  L +++N+F G 
Sbjct:   243 FEAWGNAFTGTLPSSLFTIASLTSINLRNNQLNGTLEFGNISSPSTLTVLDISNNNFIGP 302

Query:   310 LPASFGNLRSLRTLDVYECKFSGQIPSSL-SNLTHLSFLDFSLNNFSGKMDLDIFLVNH- 367
             +P S     +L+ LD+      G +  S+ +NL  L  L+ S  N +  +DL+    +H 
Sbjct:   303 IPKSISKFINLQDLDLSHLNTQGPVDFSIFTNLKSLQLLNLSHLNTTTTIDLNALFSSHL 362

Query:   368 KLLYHLFLSTNRLSLLTKATSNTTSHRFRAVS---LCSCDLTEIPKFLKNQHHLELLDLA 424
               +Y + LS N +S  TK  S    H  + +S   L  C +TE P+ L++QH +  LD++
Sbjct:   363 NSIYSMDLSGNHVSATTKI-SVADHHPTQLISQLYLSGCGITEFPELLRSQHKMTNLDIS 421

Query:   425 SNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFD---QH------PNTVNYLV-SNNSLT 474
             +NKI G+VP WL   ++     ++LS+N  TGF+   +H        ++ YLV SNN+ T
Sbjct:   422 NNKIKGQVPGWLW--TLPKLIFVDLSNNIFTGFERSTEHGLSLITKPSMQYLVGSNNNFT 479

Query:   475 GEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG 534
             G+IPS+IC L + L +LDLS NNL+G +P C+GN    LS L+L+ N+  G +P ++ K 
Sbjct:   480 GKIPSFICALRS-LITLDLSDNNLNGSIPPCMGNLKSTLSFLNLRQNRLGGGLPRSIFKS 538

Query:   535 NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNK 594
               L+ +D+  N L G++PRS    S LE L++ +N+I D FP WL +L  L VL+L+SN 
Sbjct:   539 --LRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDTFPFWLSSLKKLQVLVLRSNA 596

Query:   595 FHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFN 654
             FHG I        F  LRII+LS N+F+G LP+  F  WNAM  + A+E R  ++ +   
Sbjct:   597 FHGPIHH----ASFHTLRIINLSHNQFSGTLPANYFVNWNAMSSLMATEDRSQEKYM--G 650

Query:   655 EGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADN 714
             +    Y  S+ + NKG  M   +I  I TA+  S N+ +GEIP SI  LK L +L+L+ N
Sbjct:   651 DSFRYYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLLKELHVLNLSSN 710

Query:   715 SLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQF 774
             +  GHIPS +GNL +LESLD+S N+ SG+IPQ+L  L++L + N S N   G +P G QF
Sbjct:   711 AFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNFSHNQLGGLVPGGTQF 770

Query:   775 ATFDKTSFDGNSGLCGRPLSSEC-EI-SEAPTNEDQIEDSEESLLSGVSDWKIILIGYAG 832
                + +SF  N GL G  L   C +I + AP   +  E  EE     V  W    IG+  
Sbjct:   771 RRQNCSSFKDNPGLYGSSLEEVCLDIHAPAPQQHEPPELEEED--REVFSWIAAAIGFGP 828

Query:   833 GLIVGV 838
             G+  G+
Sbjct:   829 GIAFGL 834

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 276/735 (37%), Positives = 398/735 (54%)

Query:   148 LDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNXXXXXXXXXXXXXG 207
             LDL ++    P  LR  S  +L  +L +L++LVLG   +S  +P +              
Sbjct:    29 LDLQYSHLNGP--LRSNS--SLF-RLQHLQKLVLGSNHLSGILPDSIGNLKRLKVLVLVN 83

Query:   208 CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL----------DLLQNN 257
             C+L G+IPSSLGN++ L HLDLS+N  + E P  +G L  L ++          DL  N 
Sbjct:    84 CNLFGKIPSSLGNLSYLTHLDLSYNDFTSEGPDSMGNLNRLTDMLLKLSSVTWIDLGDNQ 143

Query:   258 LSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
             L G LP+++ +L+ LE  D+S N F G +PSSL  +  L  L L  NDFSG  P   GN+
Sbjct:   144 LKGMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMIPSLILLHLGRNDFSG--PFEIGNI 201

Query:   318 RS---LRTLDVYECKFSGQIP--SSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYH 372
              S   L+ L++    F+  I   S  S L  L +LD S  N   K+   + L +  + Y 
Sbjct:   202 SSPSNLQLLNIGRNNFNPDIVDLSIFSPLLSLGYLDVSGINL--KISSTVSLPS-PIEYL 258

Query:   373 LFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKING-K 431
               LS N +S   K   N TS  +  +S    +  ++P++L +   L  ++++ N  NG +
Sbjct:   259 GLLSCN-ISEFPKFLRNQTSLEYLDISANQIE-GQVPEWLWSLPELRYVNISHNSFNGFE 316

Query:   432 VPKWLLDPSMQNFGHLNLSHN-FLTGFDQHPN-TVNYLVS-NNSLTGEIPSWICNLSNRL 488
              P  ++    +    L++S N F   F   P  ++NYL S NN  +GEIP  IC L N L
Sbjct:   317 GPADVIQGGRELLV-LDISSNIFQDPFPLLPVVSMNYLFSSNNRFSGEIPKTICELDN-L 374

Query:   489 ESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQ 548
               L LS NN SG +P+C  N    L +L L++N  SG  P+  +  + L+  D+  NL  
Sbjct:   375 RILVLSNNNFSGSIPRCFENLH--LYVLHLRNNNLSGIFPEEAISHH-LQSFDVGHNLFS 431

Query:   549 GRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGF 608
             G +P+SL NCS++EFL++ DN+I D FPSWL  LP+L +L+L+SN+F+G I  P     F
Sbjct:   432 GELPKSLINCSDIEFLNVEDNRINDTFPSWLELLPNLQILVLRSNEFYGPIFSPGDSLSF 491

Query:   609 PKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSN 668
              +LRI D+S+NRFTG LPS  F  W+ M  V   + R +Q  +   + +  Y  S+ + N
Sbjct:   492 SRLRIFDISENRFTGVLPSDYFVGWSVMSSVVDIDGRIIQYTVTGIDRD-FYHKSVALIN 550

Query:   669 KGQMMSYKKIP-DILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNL 727
             KG  M        I   + +S NR +G+IP SI  LK + +LS+++N+  GHIP  L NL
Sbjct:   551 KGLKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNL 610

Query:   728 TDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSG 787
             ++L+SLDLS NR SG IP +L +LTFLE+ N S N   GPIP+  Q  T D +SF  N G
Sbjct:   611 SNLQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENPG 670

Query:   788 LCGRPLSSECEISEAPTNEDQIEDSEESLLSGVSDWKIILIGYAGGLIVGVEAMGGSLFT 847
             LCG PL  +C   E  T ++Q ED EE     V  W    IGY  G++ G+  +G  L +
Sbjct:   671 LCGAPLLKKCGGEEEATKQEQDEDKEEE--DQVFSWIAAAIGYVPGVVCGL-TIGHILVS 727

Query:   848 ISMQFVFSLIFFNFT 862
                 +   ++ F FT
Sbjct:   728 HKRDWFMRIVSF-FT 741

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
 Identities = 289/845 (34%), Positives = 431/845 (51%)

Query:    51 NNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSE 110
             NN D  +++GV C+ +TG V  L L   CL G++ S+SSLF    L ++DL  N+   S 
Sbjct:    58 NNSD--TFNGVWCDNSTGAVAVLQLRK-CLSGTLKSNSSLFGFHQLRYVDLQNNNLTSSS 114

Query:   111 IPPEIIXXXXXXXXXXXXAAFSGQIPSEILELSKLAYLDLSHNSYYD--PVE--LRKPSL 166
             +P                  F GQ+PS    L+ LA LDLS+N      P+   LRK  +
Sbjct:   115 LPSGFGNLKRLEGLFLSSNGFLGQVPSSFSNLTMLAQLDLSYNKLTGSFPLVRGLRKLIV 174

Query:   167 ---------GNLAD-----KLTNLKELVLGDVTISSPIPHNXXXXXXXXXXXXXGCDLRG 212
                      G L       +L  L+ L L     SS +P                    G
Sbjct:   175 LDLSYNHFSGTLNPNSSLFELHQLRYLNLAFNNFSSSLPSKFGNLHRLENLILSSNGFSG 234

Query:   213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL 272
             ++PS++ N+TRL  L L  NKL+   P  +  L +L ELDL  N   G +P+S+  L  L
Sbjct:   235 QVPSTISNLTRLTKLYLDQNKLTSSFP-LVQNLTNLYELDLSYNKFFGVIPSSLLTLPFL 293

Query:   273 EQVDLSLNRFLGKVP-SSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFS 331
               + L  N   G V  S+    ++L  + L SN F G++      L +L+ LD+     S
Sbjct:   294 AHLALRENNLAGSVEVSNSSTSSRLEIMYLGSNHFEGQILEPISKLINLKHLDLSFLNTS 353

Query:   332 GQIPSSL-SNLTHLSFLDFSLNNFSG-KMDLDIFL-VNHKLLYHLFLSTNRLSLLTKATS 388
               I   L S+L  L  LD S N+ S   +  D ++ +  ++L       N    + K   
Sbjct:   354 YPIDLKLFSSLKSLRSLDLSGNSISSASLSSDSYIPLTLEMLTLRHCDINEFPNILK--- 410

Query:   389 NTTSHRFRAVSLCSCDLT-EIPKFLKNQHHLELLDLASNKING-KVPKWLLDPSMQNFGH 446
               T      + + +  +  +IP++L +   L+ + L +N   G +    +L  S     +
Sbjct:   411 --TLKELVYIDISNNRMKGKIPEWLWSLPLLQSVTLGNNYFTGFQGSAEILVNSSVLLLY 468

Query:   447 LNLSHNFLTGFDQHPNTVN-YLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQC 505
             L+ S+NF       P ++  + V++NS T EIP  ICN S+ L ++DLSYNN +G +P C
Sbjct:   469 LD-SNNFEGALPDLPLSIKGFGVASNSFTSEIPLSICNRSS-LAAIDLSYNNFTGPIPPC 526

Query:   506 LGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565
             L N    L ++ L++N   G+IPD L  G  L+ +D+S N L G++PRS  NCS+L+FL 
Sbjct:   527 LRN----LELVYLRNNNLEGSIPDALCDGASLRTLDVSHNRLTGKLPRSFVNCSSLKFLS 582

Query:   566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREP-KTDCGFPKLRIIDLSKNRFTGK 624
             + +N+I D FP WL  LP+L VL L+SN+F+G I  P +   GFP+LRI ++S N+FTG 
Sbjct:   583 VINNRIEDTFPFWLKALPNLQVLTLRSNRFYGPISPPHQGPLGFPELRIFEISDNKFTGS 642

Query:   625 LPSMAFQCWNAM-KVVNASELRYM--QEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDI 681
             LP   F  W A  + +N     YM  +E + F+EG   Y  +L +  KG  M   K    
Sbjct:   643 LPPNYFVNWKASSRTMNQDGGLYMVYEEKL-FDEGGYGYTDALDLQYKGLHMEQAKALTS 701

Query:   682 LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS 741
               A+  S NR +G+IP SI  LK L  +++++N+  GHIP  + NL +LESLD+S N+ S
Sbjct:   702 YAAIDFSGNRLEGQIPESIGLLKALIAVNISNNAFTGHIPLSMANLENLESLDMSRNQLS 761

Query:   742 GQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISE 801
             G IP  L  ++FL + NVS N  TG IPQG Q     K+SF+GN+GLCG PL   C  + 
Sbjct:   762 GTIPNGLGSISFLAYINVSHNQLTGEIPQGTQITGQSKSSFEGNAGLCGLPLKESCFGTG 821

Query:   802 APT-----NED-QIEDSEESLLSGVSDWKIILIGYAGGLIVGVEAMGGSLFTISMQFVFS 855
             AP       ED + E+ EE     V + + + IGY  GL++G+ A+   + +   +++  
Sbjct:   822 APPMYHQKQEDKEEEEEEEEEEEEVLNGRAVAIGYGSGLLLGL-AIAQVIASYKPEWLVK 880

Query:   856 LIFFN 860
             +I  N
Sbjct:   881 IIGLN 885

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	930
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-82
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	9e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  287 bits (735), Expect = 1e-82
 Identities = 244/790 (30%), Positives = 346/790 (43%), Gaps = 203/790 (25%)

Query: 7   HGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNEN 66
           H +E   LL FK S I    K +             ++W      + D C W G+ CN N
Sbjct: 27  HAEELELLLSFKSS-INDPLKYL-------------SNWNS----SADVCLWQGITCN-N 67

Query: 67  TGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLS-SLSYLN 125
           +  V+ +DLS   + G I  SS++F+L +++ ++L+ N   G  IP +I   S SL YLN
Sbjct: 68  SSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLN 124

Query: 126 LSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVT 185
           LS+  F+G IP     +  L  LDLS+N                                
Sbjct: 125 LSNNNFTGSIPRG--SIPNLETLDLSNN-------------------------------M 151

Query: 186 ISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTL 245
           +S  IP+++   SSL  L L G  L G+IP+SL N+T L  L L+ N+L  ++P  +G +
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 246 GSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASND 305
            SLK + L  NNLSGE+P  IG L SL  +DL  N   G +PSSLGNL  L +L L  N 
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 306 FSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLV 365
            SG +P S  +L+ L +LD+ +   SG+IP  +  L +L  L    NNF+GK        
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK-------- 323

Query: 366 NHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLAS 425
                                                     IP  L +   L++L L S
Sbjct: 324 ------------------------------------------IPVALTSLPRLQVLQLWS 341

Query: 426 NKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLS 485
           NK +G++PK        N G     HN LT  D         +S N+LTGEIP  +C+ S
Sbjct: 342 NKFSGEIPK--------NLG----KHNNLTVLD---------LSTNNLTGEIPEGLCS-S 379

Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDN 545
             L  L L  N+L G +P+ LG     L  + LQ N FSG +P    K  ++  +D+S+N
Sbjct: 380 GNLFKLILFSNSLEGEIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 546 LLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTD 605
            LQGRI     +  +L+ L L  N        + G LPD                     
Sbjct: 439 NLQGRINSRKWDMPSLQMLSLARN-------KFFGGLPDSF------------------- 472

Query: 606 CGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLT 665
            G  +L  +DLS+N+F+G +P          K+ + SEL  ++                 
Sbjct: 473 -GSKRLENLDLSRNQFSGAVPR---------KLGSLSELMQLK----------------- 505

Query: 666 MSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG 725
                                LS N+  GEIP  +S+ K L  L L+ N L G IP+   
Sbjct: 506 ---------------------LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 726 NLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGN 785
            +  L  LDLS N+ SG+IP+ L  +  L   N+S NH  G +P    F   + ++  GN
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604

Query: 786 SGLCGRPLSS 795
             LCG   +S
Sbjct: 605 IDLCGGDTTS 614

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 93.0 bits (231), Expect = 2e-19
 Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 681 ILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRF 740
            +  + L +    G IP  IS L+ LQ ++L+ NS+ G+IP  LG++T LE LDLS N F
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 741 SGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFD--GNSGLCGRPLSSEC 797
           +G IP+ L +LT L   N++ N  +G +P         + SF+   N+GLCG P    C
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 6e-15
 Identities = 37/89 (41%), Positives = 52/89 (58%)

Query: 227 LDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKV 286
           L L    L   +P  I  L  L+ ++L  N++ G +P S+G++ SLE +DLS N F G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 287 PSSLGNLTQLHWLSLASNDFSGELPASFG 315
           P SLG LT L  L+L  N  SG +PA+ G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 2e-13
 Identities = 35/78 (44%), Positives = 54/78 (69%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK 249
           IP++++ L  L +++LSG  +RG IP SLG+IT L  LDLS+N  +  +P  +G L SL+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 250 ELDLLQNNLSGELPNSIG 267
            L+L  N+LSG +P ++G
Sbjct: 494 ILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.2 bits (177), Expect = 7e-13
 Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 1/103 (0%)

Query: 251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGEL 310
           L L    L G +PN I  L  L+ ++LS N   G +P SLG++T L  L L+ N F+G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 311 PASFGNLRSLRTLDVYECKFSGQIPSSL-SNLTHLSFLDFSLN 352
           P S G L SLR L++     SG++P++L   L H +  +F+ N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 1e-12
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 1/106 (0%)

Query: 203 LSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGEL 262
           L L    LRG IP+ +  +  L  ++LS N +   +P  +G++ SL+ LDL  N+ +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 263 PNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSG 308
           P S+G L SL  ++L+ N   G+VP++LG    LH  S    D +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRL-LHRASFNFTDNAG 527

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.5 bits (149), Expect = 8e-10
 Identities = 88/226 (38%), Positives = 113/226 (50%), Gaps = 35/226 (15%)

Query: 110 EIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNL 169
           +    ++NL  L  L+L+       I SE+LEL+ L  LDL +N+  D      P +G L
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD----IPPLIGLL 138

Query: 170 ADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDL 229
                NLKEL L D  I S +P  L  L +L  L LS  DL   +P  L N++ L +LDL
Sbjct: 139 KS---NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193

Query: 230 SFNKLSDELPTFIGTLGSLKELDL----------------------LQNNLSGELPNSIG 267
           S NK+SD LP  I  L +L+ELDL                      L NN   +LP SIG
Sbjct: 194 SGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252

Query: 268 NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPAS 313
           NL++LE +DLS N       SSLG+LT L  L L+ N  S  LP  
Sbjct: 253 NLSNLETLDLSNN--QISSISSLGSLTNLRELDLSGNSLSNALPLI 296

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 3e-09
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 21/124 (16%)

Query: 415 QHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYL------- 467
           QH     D   +   GK   W +D        L L +  L GF   PN ++ L       
Sbjct: 401 QHPWSGADCQFDSTKGK---WFIDG-------LGLDNQGLRGF--IPNDISKLRHLQSIN 448

Query: 468 VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTI 527
           +S NS+ G IP  + ++++ LE LDLSYN+ +G +P+ LG  +  L IL+L  N  SG +
Sbjct: 449 LSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGSIPESLGQLTS-LRILNLNGNSLSGRV 506

Query: 528 PDNL 531
           P  L
Sbjct: 507 PAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query: 284 GKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTH 343
           G +P+ +  L  L  ++L+ N   G +P S G++ SL  LD+    F+G IP SL  LT 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 344 LSFLDFSLNNFSGKM 358
           L  L+ + N+ SG++
Sbjct: 492 LRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 1e-07
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 510 SDW-LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGD 568
             W +  L L +    G IP+++ K   L+ I+LS N ++G IP SL + ++LE LDL  
Sbjct: 416 GKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475

Query: 569 NQIRDIFPSWLGTLPDLNVLILKSNKFHG 597
           N      P  LG L  L +L L  N   G
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 7/101 (6%)

Query: 58  WDGVQC--NENTGH--VIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPP 113
           W G  C  +   G   +  L L +  L+G I +  S  KL HL+ ++L+ N   G  IPP
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRG-NIPP 460

Query: 114 EIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNS 154
            + +++SL  L+LS  +F+G IP  + +L+ L  L+L+ NS
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 53.3 bits (128), Expect = 5e-07
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 12/183 (6%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
           TNL+ L L D +    +P ++ YL+ L  L +S C+    +P+ + N+  L  L+LS   
Sbjct: 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSG-- 713

Query: 234 LSDELPTFIGTLGSLKELDLLQNNLSGELPNS--IGNLASLEQVDLSLNRFLGKVPSSLG 291
               L +F     ++  LDL +  +  E P++  + NL  L   ++   +   +V     
Sbjct: 714 -CSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTP 771

Query: 292 NLT----QLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFL 347
            +T     L  L L+      ELP+S  NL  L  L++  C     +P+ + NL  L  L
Sbjct: 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL 830

Query: 348 DFS 350
           D S
Sbjct: 831 DLS 833

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 6e-07
 Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 31/120 (25%)

Query: 124 LNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGD 183
           L L +    G IP++I +L  L  ++LS NS                             
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNS----------------------------- 453

Query: 184 VTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIG 243
             I   IP +L  ++SL  L LS     G IP SLG +T L  L+L+ N LS  +P  +G
Sbjct: 454 --IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 7e-07
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 540 IDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLI 599
           + L +  L+G IP  ++   +L+ ++L  N IR   P  LG++  L VL L  N F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 600 REPKTDCGFPKLRIIDLSKNRFTGKLPS 627
             P++      LRI++L+ N  +G++P+
Sbjct: 483 --PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 52.6 bits (126), Expect = 9e-07
 Identities = 79/271 (29%), Positives = 113/271 (41%), Gaps = 34/271 (12%)

Query: 105 DFDGSEIPPEIINLS---SLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYD--PV 159
           D  GS+   EI +LS   +L  L LS  +   ++PS I  L+KL  LD+S     +  P 
Sbjct: 640 DLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699

Query: 160 ELRKPSLGNL-----------ADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGC 208
            +   SL  L            D  TN+  L L +  I    P NL  L +L  L L  C
Sbjct: 700 GINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE-FPSNL-RLENLDELIL--C 755

Query: 209 DLR-----GRIPSSLGNITRLIH----LDLSFNKLSDELPTFIGTLGSLKELDLLQNNLS 259
           +++      R+      +T L      L LS      ELP+ I  L  L+ L++      
Sbjct: 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815

Query: 260 GELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRS 319
             LP  I NL SLE +DLS    L   P    N++ L+           E+P       +
Sbjct: 816 ETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE----EVPWWIEKFSN 870

Query: 320 LRTLDVYECKFSGQIPSSLSNLTHLSFLDFS 350
           L  LD+  C    ++  ++S L HL  +DFS
Sbjct: 871 LSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 2e-06
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 34/122 (27%)

Query: 111 IPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLA 170
           IP +I  L  L  +NLS  +  G IP  +  ++ L  LDLS+NS+               
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF--------------- 478

Query: 171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLS 230
                           +  IP +L  L+SL  L+L+G  L GR+P++LG   RL+H   S
Sbjct: 479 ----------------NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG--RLLH-RAS 519

Query: 231 FN 232
           FN
Sbjct: 520 FN 521

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 5e-06
 Identities = 69/184 (37%), Positives = 95/184 (51%), Gaps = 15/184 (8%)

Query: 87  SSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLA 146
            S L  L +L+ LDL+FND   S++P  + NLS+L+ L+LS    S  +P EI  LS L 
Sbjct: 156 PSPLRNLPNLKNLDLSFNDL--SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE 212

Query: 147 YLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLS 206
            LDLS+NS           L +L+  L NL  L L +  +   +P ++  LS+L TL LS
Sbjct: 213 ELDLSNNSI-------IELLSSLS-NLKNLSGLELSNNKLED-LPESIGNLSNLETLDLS 263

Query: 207 GCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGT-LGSLKELDLLQNNLSGELPNS 265
               +    SSLG++T L  LDLS N LS+ LP      L     L+LL    + EL  +
Sbjct: 264 NN--QISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLN 321

Query: 266 IGNL 269
              L
Sbjct: 322 SILL 325

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.9 bits (119), Expect = 7e-06
 Identities = 92/395 (23%), Positives = 157/395 (39%), Gaps = 36/395 (9%)

Query: 190 IPHNLTYL-SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL 248
           +P    YL   L  L      LR  +PS+      L+ L +  +KL ++L   + +L  L
Sbjct: 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKL-EKLWDGVHSLTGL 636

Query: 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSG 308
           + +DL  +    E+P+ +    +LE + LS    L ++PSS+  L +L  L ++  +   
Sbjct: 637 RNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE 695

Query: 309 ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHK 368
            LP    NL+SL  L++  C      P   +N++ L   + ++  F   + L+       
Sbjct: 696 ILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELIL 754

Query: 369 LLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSC-DLTEIPKFLKNQHHLELLDLASNK 427
                     R+  LT   +   S     + L     L E+P  ++N H LE L++  N 
Sbjct: 755 CEMKSEKLWERVQPLTPLMT-MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE-NC 812

Query: 428 INGKVPKWLLDPSMQNFGH---LNLSH-NFLTGFDQHPNTVNYLVSNNSLTGEIPSWICN 483
           IN +       P+  N      L+LS  + L  F      ++ L  + +   E+P WI  
Sbjct: 813 INLETL-----PTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK 867

Query: 484 LSNRLESLDLS-YNNLSGLLPQC-------LGNFSDWLSILDLQHNKFSGTIPDNLLKGN 535
            SN L  LD++  NNL  +             +FSD  ++ +   N     +        
Sbjct: 868 FSN-LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVA------- 919

Query: 536 ILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQ 570
                D   + L   +  +  NC NL+   L   Q
Sbjct: 920 --MATDNIHSKLPSTVCINFINCFNLDQEALLQQQ 952

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 560 NLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKN 619
           NL+ LDL +N++  I       LP+L VL L  N    +   P+   G P LR +DLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSI--SPEAFSGLPSLRSLDLSGN 58

Query: 620 RF 621
             
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 21/59 (35%), Positives = 26/59 (44%)

Query: 537 LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKF 595
           LK +DLS+N L      +     NL+ LDL  N +  I P     LP L  L L  N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 71/294 (24%), Positives = 99/294 (33%), Gaps = 53/294 (18%)

Query: 169 LADKLTNLKELVLGDVTIS----SPIPHNLTYLSSLTTLSLSGCDLR------GRIPSSL 218
           L  KL  L+ L L   T+       +   L    SL  L LS  +          +   L
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77

Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTL---GSLKELDLLQNNLSGE-LPNSIGNLAS--- 271
                L  LDLS N L  +    + +L    SL+EL L  N L    L      L     
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 272 -LEQVDLSLNRFLGKVPSSLGNL----TQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
            LE++ L  NR  G    +L         L  L+LA+N               +R L   
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG---------IRALAE- 187

Query: 327 ECKFSGQIPSSLSNLTHLSFLDFSLNNFS--GKMDLDIFLVNHKLLYHLFLSTNRLSLLT 384
                      L    +L  LD + N  +  G   L   L + K L  L L  N L+   
Sbjct: 188 ----------GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237

Query: 385 KAT----SNTTSHRFRAVSLCSCDLTE-----IPKFLKNQHHLELLDLASNKIN 429
            A       + +     +SL   D+T+     + + L  +  L  LDL  NK  
Sbjct: 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQI 571
           L  LDL +N+ +            LKV+DLS N L    P + +   +L  LDL  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 16/58 (27%)

Query: 7  HGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCN 64
            D+R ALL FK SL                     +SW P   ++ D CSW GV C+
Sbjct: 1  LNDDRDALLAFKSSLNGDP-------------SGALSSWNP---SSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 71/323 (21%), Positives = 117/323 (36%), Gaps = 59/323 (18%)

Query: 227 LDLSFNKLSDELPT-FIGTLGSLKELDLLQNNLSGE----LPNSIGNLASLEQVDLSLN- 280
           L L    L  E  T  +  L  L+ L L  N L  E    L +++    SL+++ LSLN 
Sbjct: 3   LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE 62

Query: 281 -----RFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLR---SLRTLDVYECKFSG 332
                R L  +   L     L  L L+ N    +      +L    SL+ L +       
Sbjct: 63  TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122

Query: 333 QIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTS 392
                      L  L   L        L+  ++    L     S   L+   +A      
Sbjct: 123 ---------RGLRLLAKGLK--DLPPALEKLVLGRNRLEG--ASCEALAKALRANR---- 165

Query: 393 HRFRAVSLCSCDLTE--IPKF---LKNQHHLELLDLASNKINGKVPKWLLD--PSMQNFG 445
              + ++L +  + +  I      LK   +LE+LDL +N +  +    L +   S+++  
Sbjct: 166 -DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224

Query: 446 HLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGL---- 501
            LNL  N LT               ++    + S + + +  L +L LS N+++      
Sbjct: 225 VLNLGDNNLT---------------DAGAAALASALLSPNISLLTLSLSCNDITDDGAKD 269

Query: 502 LPQCLGNFSDWLSILDLQHNKFS 524
           L + L      L  LDL+ NKF 
Sbjct: 270 LAEVLAEKES-LLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 682 LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRF 740
           L ++ LS+NR       +   L  L++L L+ N+L    P     L  L SLDLS N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 4e-04
 Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 9/161 (5%)

Query: 462 NTVNYLVSNNSLTGEIPSWICNLSNR--LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQ 519
           + +  L   +           NL N   L SLDL+ N L   + + L      L+ LDL 
Sbjct: 67  SRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLEL--TNLTSLDLD 124

Query: 520 HNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWL 579
           +N  +   P   L  + LK +DLSDN ++  +P  L N  NL+ LDL  N + D+    L
Sbjct: 125 NNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKL-L 182

Query: 580 GTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNR 620
             L +LN L L  NK   L  E +       L  +DLS N 
Sbjct: 183 SNLSNLNNLDLSGNKISDLPPEIELLSA---LEELDLSNNS 220

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 24/60 (40%), Positives = 30/60 (50%)

Query: 223 RLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRF 282
            L  LDLS N+L+         L +LK LDL  NNL+   P +   L SL  +DLS N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 295 QLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNF 354
            L  L L++N  +     +F  L +L+ LD+     +   P + S L  L  LD S NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 75/294 (25%), Positives = 120/294 (40%), Gaps = 21/294 (7%)

Query: 254 LQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPAS 313
           L +N    LP+S+  L SL+ +  S    L     +L NL  L  L L  N     +   
Sbjct: 54  LSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGS-ENLLNLLPLPSLDLNLNRLRSNISEL 112

Query: 314 FG--NLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLY 371
               NL SL   +         I    SNL  L   D  + +    +       N   L 
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLR------NLPNLK 166

Query: 372 HLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGK 431
           +L LS N LS L K  SN ++     +S     ++++P  ++    LE LDL++N I  +
Sbjct: 167 NLDLSFNDLSDLPKLLSNLSNLNNLDLS--GNKISDLPPEIELLSALEELDLSNNSII-E 223

Query: 432 VPKWLLDPSMQNFGHLNLSHNFLTGFD---QHPNTVNYL-VSNNSLTGEIPSWICNLSNR 487
           +   L +    +   L LS+N L        + + +  L +SNN ++    S + +L+N 
Sbjct: 224 LLSSLSNLKNLSG--LELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTN- 278

Query: 488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVID 541
           L  LDLS N+LS  LP           +L+L     +  +  N +  N   + +
Sbjct: 279 LRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSN 332

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 705 GLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHF 764
            L+ L L++N L          L +L+ LDLS N  +   P+    L  L   ++S N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 40.8 bits (95), Expect = 0.003
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 28/210 (13%)

Query: 413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNS 472
            N+  L L  L    I   +P+ +    + N    +L  N         N      ++N 
Sbjct: 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENL------QGNIKTLYANSNQ 231

Query: 473 LTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLL 532
           LT  IP+    L + ++ ++LS N ++ L P+ L      L  LDL HNK S  +P+NL 
Sbjct: 232 LT-SIPA---TLPDTIQEMELSINRITEL-PERL---PSALQSLDLFHNKIS-CLPENLP 282

Query: 533 KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS 592
           +   L+ + + DN ++  +P  L   S +  L++  N +    P  L   P L  L    
Sbjct: 283 EE--LRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSL-TALPETLP--PGLKTLEAGE 334

Query: 593 NKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
           N    L          P+L+++D+SKN+ T
Sbjct: 335 NALTSLPASLP-----PELQVLDVSKNQIT 359

Length = 754

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	930
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
PLN03150	623	hypothetical protein; Provisional	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
PLN03150	623	hypothetical protein; Provisional	99.51
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.8
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.79
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.78
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.72
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.44
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.2
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.18
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.17
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.17
KOG4341	483	consensus F-box protein containing LRR [General fu	97.93
PRK15386	426	type III secretion protein GogB; Provisional	97.91
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.84
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.7
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.63
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.48
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.39
KOG4341	483	consensus F-box protein containing LRR [General fu	97.32
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.71
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.7
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.46
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.32
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.82
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.59
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.32
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.31
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.75
KOG4308	478	consensus LRR-containing protein [Function unknown	93.51
KOG4308	478	consensus LRR-containing protein [Function unknown	92.85
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.44
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	87.71
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.22
smart00370	26	LRR Leucine-rich repeats, outliers.	82.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	82.92
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.47

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.5e-73  Score=721.20  Aligned_cols=584  Identities=38%  Similarity=0.620  Sum_probs=438.0

Q ss_pred             cHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCCcccccC
Q 047985            7 HGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINS   86 (930)
Q Consensus         7 ~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~   86 (930)
                      +++|++||++||+++.++..              .+.+|..    ..+||.|.||+|+. .++|+.|||+++.+.|.+++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~--------------~~~~w~~----~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~   87 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLK--------------YLSNWNS----SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS   87 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcc--------------cCCCCCC----CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh
Confidence            57899999999999975533              5789976    57999999999986 47999999999999998866


Q ss_pred             cccccCCCCCCEEECCCCCCCCCCCchhcc-CCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCc
Q 047985           87 SSSLFKLVHLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPS  165 (930)
Q Consensus        87 ~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~  165 (930)
                        .+..+++|++|+|++|.+.+. +|..+. .+++|++|+|++|.++|.+|.  +.+++|++|+|++|.           
T Consensus        88 --~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~-----------  151 (968)
T PLN00113         88 --AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM-----------  151 (968)
T ss_pred             --HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc-----------
Confidence              888999999999999999875 777655 899999999999999888775  456777777777763           


Q ss_pred             hhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCC
Q 047985          166 LGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTL  245 (930)
Q Consensus       166 l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  245 (930)
                                          +++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++
T Consensus       152 --------------------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  211 (968)
T PLN00113        152 --------------------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM  211 (968)
T ss_pred             --------------------ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence                                344445555555555555555555555555556666666666666666665566666666


Q ss_pred             CCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeec
Q 047985          246 GSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV  325 (930)
Q Consensus       246 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  325 (930)
                      ++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++
T Consensus       212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  291 (968)
T PLN00113        212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL  291 (968)
T ss_pred             CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCC
Q 047985          326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL  405 (930)
Q Consensus       326 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l  405 (930)
                      ++|.+.+.+|..+.++++|+.|++++|.+.+.+|                                              
T Consensus       292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~----------------------------------------------  325 (968)
T PLN00113        292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP----------------------------------------------  325 (968)
T ss_pred             cCCeeccCCChhHcCCCCCcEEECCCCccCCcCC----------------------------------------------
Confidence            6666666666666666667777666666654433                                              


Q ss_pred             CCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcc
Q 047985          406 TEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLS  485 (930)
Q Consensus       406 ~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~  485 (930)
                          ..+..+++|+.|++++|.+.+.+|..                                             +..+ 
T Consensus       326 ----~~~~~l~~L~~L~L~~n~l~~~~p~~---------------------------------------------l~~~-  355 (968)
T PLN00113        326 ----VALTSLPRLQVLQLWSNKFSGEIPKN---------------------------------------------LGKH-  355 (968)
T ss_pred             ----hhHhcCCCCCEEECcCCCCcCcCChH---------------------------------------------HhCC-
Confidence                22334455555555555554444333                                             2233 


Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      ++|+.|++++|++++.+|..+..+.. |+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..|.+++.|+.|+
T Consensus       356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~-L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  434 (968)
T PLN00113        356 NNLTVLDLSTNNLTGEIPEGLCSSGN-LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD  434 (968)
T ss_pred             CCCcEEECCCCeeEeeCChhHhCcCC-CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence            45566666666666666665555553 66666666666666666666677777777777777777777777777788888


Q ss_pred             ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccc
Q 047985          566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR  645 (930)
Q Consensus       566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~  645 (930)
                      +++|++++.+|..+..+++|+.|+|++|++.+.+|...   ..++|+.||+++|++++.+|.. +..             
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~-~~~-------------  497 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRK-LGS-------------  497 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChh-hhh-------------
Confidence            88888887777777778888888888888887776644   3578999999999999888753 221             


Q ss_pred             cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCccccc
Q 047985          646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG  725 (930)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~  725 (930)
                                                       ++.|+.|+|++|+++|.+|..++++++|+.|+|++|.++|.+|..++
T Consensus       498 ---------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  544 (968)
T PLN00113        498 ---------------------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS  544 (968)
T ss_pred             ---------------------------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence                                             23478999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCCCcCccCCcccCCCCCCCCCC
Q 047985          726 NLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRP  792 (930)
Q Consensus       726 ~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~~~~~~~~~s~~gn~~Lcg~~  792 (930)
                      ++++|+.|||++|+++|.+|..+..+++|++|++++|+++|.||..++|.+|...+|.||+++||.+
T Consensus       545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.8e-58  Score=578.12  Aligned_cols=515  Identities=36%  Similarity=0.588  Sum_probs=451.5

Q ss_pred             CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCcccc-CCCCCcEEEccCCCCCCCccccCCchhhhhhC
Q 047985           94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEIL-ELSKLAYLDLSHNSYYDPVELRKPSLGNLADK  172 (930)
Q Consensus        94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~  172 (930)
                      .+++.|||++|.+.+. +|..+..+++|++|+|++|.++|.+|..+. .+++|++|+|++|                   
T Consensus        69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-------------------  128 (968)
T PLN00113         69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-------------------  128 (968)
T ss_pred             CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-------------------
Confidence            4677888888887775 677788888888888888888877776654 6667777777666                   


Q ss_pred             CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEE
Q 047985          173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELD  252 (930)
Q Consensus       173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  252 (930)
                                  .+++.+|.  +.+++|++|+|++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|+
T Consensus       129 ------------~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  194 (968)
T PLN00113        129 ------------NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT  194 (968)
T ss_pred             ------------ccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence                        34444443  3578999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985          253 LLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG  332 (930)
Q Consensus       253 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~  332 (930)
                      +++|.+++.+|..++++++|++|+|++|++++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|++.+
T Consensus       195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhh
Q 047985          333 QIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL  412 (930)
Q Consensus       333 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l  412 (930)
                      .+|..+..+++|+.|++++|.+.+.+|                                                  ..+
T Consensus       275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p--------------------------------------------------~~~  304 (968)
T PLN00113        275 PIPPSIFSLQKLISLDLSDNSLSGEIP--------------------------------------------------ELV  304 (968)
T ss_pred             cCchhHhhccCcCEEECcCCeeccCCC--------------------------------------------------hhH
Confidence            999999999999999999998876544                                                  334


Q ss_pred             hcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceee
Q 047985          413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLD  492 (930)
Q Consensus       413 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~  492 (930)
                      ..+++|+.|++++|.+.+.+|                                             ..+..+ ++|+.|+
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~~---------------------------------------------~~~~~l-~~L~~L~  338 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKIP---------------------------------------------VALTSL-PRLQVLQ  338 (968)
T ss_pred             cCCCCCcEEECCCCccCCcCC---------------------------------------------hhHhcC-CCCCEEE
Confidence            456667777777766654444                                             444455 7899999


Q ss_pred             cccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCcccc
Q 047985          493 LSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR  572 (930)
Q Consensus       493 Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  572 (930)
                      +++|.+++.+|..++.+.. |+.|++++|++++.+|..+..+.+|+.|++++|++.+.+|..+..+++|+.|++++|+++
T Consensus       339 L~~n~l~~~~p~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~  417 (968)
T PLN00113        339 LWSNKFSGEIPKNLGKHNN-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS  417 (968)
T ss_pred             CcCCCCcCcCChHHhCCCC-CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence            9999999999999999886 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccccccccccc
Q 047985          573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIP  652 (930)
Q Consensus       573 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~  652 (930)
                      +.+|..+..++.|+.|++++|++.+.++...  ..+++|+.|++++|++.|.+|... .                     
T Consensus       418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~---------------------  473 (968)
T PLN00113        418 GELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G---------------------  473 (968)
T ss_pred             eECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc-c---------------------
Confidence            9999999999999999999999999887655  578999999999999998887421 0                     


Q ss_pred             CCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCe
Q 047985          653 FNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLES  732 (930)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~  732 (930)
                                                ...|+.||+++|+++|.+|..+.++++|+.|+|++|++++.+|..++++++|++
T Consensus       474 --------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  527 (968)
T PLN00113        474 --------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS  527 (968)
T ss_pred             --------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCE
Confidence                                      234899999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCC-CcCccCCcccCCCCCCC
Q 047985          733 LDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGK-QFATFDKTSFDGNSGLC  789 (930)
Q Consensus       733 LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~-~~~~~~~~s~~gn~~Lc  789 (930)
                      |+|++|+++|.+|..+..+++|+.||+++|+++|.+|... .+.........+|+..+
T Consensus       528 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            9999999999999999999999999999999999999752 23333444455665444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=9.2e-39  Score=327.59  Aligned_cols=493  Identities=29%  Similarity=0.398  Sum_probs=352.1

Q ss_pred             EEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEE
Q 047985           70 VIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLD  149 (930)
Q Consensus        70 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  149 (930)
                      ...+.+++|.+.- +.+  .+.++..|.+|++++|++..  +|++++.+..++.|+.++|+++ .+|.+++.+.+|+.|+
T Consensus        47 l~~lils~N~l~~-l~~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   47 LQKLILSHNDLEV-LRE--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             hhhhhhccCchhh-ccH--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            5678899988763 333  78899999999999999874  7999999999999999999998 8999999999999999


Q ss_pred             ccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEc
Q 047985          150 LSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDL  229 (930)
Q Consensus       150 Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  229 (930)
                      .++|.+        ..+++.++.+..|+.++..+|+++. .|..+.++.+|..+++.+|.+....|..+ +++.|++||.
T Consensus       121 ~s~n~~--------~el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~  190 (565)
T KOG0472|consen  121 CSSNEL--------KELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDC  190 (565)
T ss_pred             ccccce--------eecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhccc
Confidence            999964        5677788889999999999999876 56778888999999999999985555444 4999999999


Q ss_pred             cCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCC-CCCCcCCcEEEccCCCCCC
Q 047985          230 SFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSS-LGNLTQLHWLSLASNDFSG  308 (930)
Q Consensus       230 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~  308 (930)
                      ..|.++ .+|+.++.+.+|+.|+|.+|.+. ..| .|+.|..|.+|+++.|++. .+|.+ ..++++|..|||..|+++ 
T Consensus       191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-  265 (565)
T KOG0472|consen  191 NSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-  265 (565)
T ss_pred             chhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-
Confidence            999886 67888999999999999999998 667 7999999999999999987 45544 458999999999999998 


Q ss_pred             ccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHh----hccccccEEEccCCcccccc
Q 047985          309 ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFL----VNHKLLYHLFLSTNRLSLLT  384 (930)
Q Consensus       309 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~  384 (930)
                      ..|..+..+++|++||+++|.++ .+|.+++++ +|+.|.+.+|++.. +..++..    .-++.|+. .+..-.++...
T Consensus       266 e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs-~~~~dglS~se  341 (565)
T KOG0472|consen  266 EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS-KIKDDGLSQSE  341 (565)
T ss_pred             cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH-hhccCCCCCCc
Confidence            78888989999999999999998 577889999 99999999998752 2111110    01122221 00000000000


Q ss_pred             cccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCC-CCceEEeccCccCcCCCCCCCc
Q 047985          385 KATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSM-QNFGHLNLSHNFLTGFDQHPNT  463 (930)
Q Consensus       385 ~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~l  463 (930)
                      .....       ..+.    ....-.......+.+.|++++-+++ .+|...++..- .-....+++.|++.        
T Consensus       342 ~~~e~-------~~t~----~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~--------  401 (565)
T KOG0472|consen  342 GGTET-------AMTL----PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC--------  401 (565)
T ss_pred             ccccc-------cCCC----CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh--------
Confidence            00000       0000    0000011223445566666666665 44544442111 11444555555544        


Q ss_pred             ceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEcc
Q 047985          464 VNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLS  543 (930)
Q Consensus       464 ~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  543 (930)
                                  ++|..+..+..-.+.+++++|.++ -+|..+..+++ |+.|+|++|-+. .+|..++.+..|+.|+++
T Consensus       402 ------------elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~k-Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS  466 (565)
T KOG0472|consen  402 ------------ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQK-LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLS  466 (565)
T ss_pred             ------------hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhc-ceeeecccchhh-hcchhhhhhhhhheeccc
Confidence                        556555544222344555555554 66667777775 777777777766 677777777777777887


Q ss_pred             CccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcc
Q 047985          544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTG  623 (930)
Q Consensus       544 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g  623 (930)
                      .|+|. .+|..+.....|+.+-.++|++....|..+.++.+|.+|+|.+|.+..+.|. .  .++++|++|++++|+|. 
T Consensus       467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-L--gnmtnL~hLeL~gNpfr-  541 (565)
T KOG0472|consen  467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-L--GNMTNLRHLELDGNPFR-  541 (565)
T ss_pred             ccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-h--ccccceeEEEecCCccC-
Confidence            77776 5677766667777777777787777777777788888888888877765432 2  57788888888888886 


Q ss_pred             cCChH
Q 047985          624 KLPSM  628 (930)
Q Consensus       624 ~ip~~  628 (930)
                       .|..
T Consensus       542 -~Pr~  545 (565)
T KOG0472|consen  542 -QPRH  545 (565)
T ss_pred             -CCHH
Confidence             4543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1e-38  Score=327.19  Aligned_cols=246  Identities=31%  Similarity=0.431  Sum_probs=157.9

Q ss_pred             CCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhh
Q 047985           92 KLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD  171 (930)
Q Consensus        92 ~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~  171 (930)
                      .-.-|..|++++|.+..  +.+.+.++..|.+|++++|.++ ..|++++.+..++.|+.++|++        ..+|..+.
T Consensus        43 ~qv~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l--------s~lp~~i~  111 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL--------SELPEQIG  111 (565)
T ss_pred             hhcchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH--------hhccHHHh
Confidence            34567889999999864  5567899999999999999998 8888999999999999999964        45666666


Q ss_pred             CCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEE
Q 047985          172 KLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL  251 (930)
Q Consensus       172 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  251 (930)
                      .+.+|++++++.|.+.. .|+.++.+..|+.++..+|+++ ..|.++.++.+|..+++.+|++....|+.+. ++.|++|
T Consensus       112 s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~l  188 (565)
T KOG0472|consen  112 SLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHL  188 (565)
T ss_pred             hhhhhhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhc
Confidence            66677777777666543 3445555666666666666665 4455566666666666666666554444444 5666666


Q ss_pred             EccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccc-cccccceeecccccc
Q 047985          252 DLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFG-NLRSLRTLDVYECKF  330 (930)
Q Consensus       252 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l  330 (930)
                      +.-.|.++ .+|..++.+.+|+.|+|..|++. ..| .|..+..|++|.++.|++. .+|++.. .++++.+||+.+|++
T Consensus       189 d~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl  264 (565)
T KOG0472|consen  189 DCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL  264 (565)
T ss_pred             ccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc
Confidence            66665554 55555666666666666666654 333 4555555666666555554 3333332 555555555555555


Q ss_pred             cCCCcccccCCCCCCEEEccCCCCCC
Q 047985          331 SGQIPSSLSNLTHLSFLDFSLNNFSG  356 (930)
Q Consensus       331 ~~~~p~~l~~l~~L~~L~Ls~n~l~~  356 (930)
                      . ..|..+.-+.+|+.||+++|.+++
T Consensus       265 k-e~Pde~clLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  265 K-EVPDEICLLRSLERLDLSNNDISS  289 (565)
T ss_pred             c-cCchHHHHhhhhhhhcccCCcccc
Confidence            5 445555555555555555555543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-36  Score=338.72  Aligned_cols=484  Identities=28%  Similarity=0.367  Sum_probs=292.7

Q ss_pred             EEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCE
Q 047985          123 YLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTT  202 (930)
Q Consensus       123 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  202 (930)
                      .+|++..++. .||..+-.-..++.|+++.|.+.+      ..+ +++.+                        .-+|+.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~------~pl-~~~~~------------------------~v~L~~   49 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLS------RPL-EFVEK------------------------RVKLKS   49 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhcccccccc------Cch-HHhhh------------------------eeeeEE
Confidence            4677777777 778777665668888888884311      001 11222                        223555


Q ss_pred             EEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCC
Q 047985          203 LSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRF  282 (930)
Q Consensus       203 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  282 (930)
                      |++++|.+. .+|..+..+.+|+.|+++.|.+. ..|....++.+|++|.|..|.+. ..|..+..+++|++|++++|++
T Consensus        50 l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f  126 (1081)
T KOG0618|consen   50 LDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHF  126 (1081)
T ss_pred             eeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhcc
Confidence            555555544 45555556666666666666554 33455566666666666666665 5566666666666666666665


Q ss_pred             CCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhH
Q 047985          283 LGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDI  362 (930)
Q Consensus       283 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~  362 (930)
                      . .+|..+..++.+..+..++|.....    ++... ++.+++..|.+.+.++..+..++.  .|+|.+|.+. ....  
T Consensus       127 ~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dl--  195 (1081)
T KOG0618|consen  127 G-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDL--  195 (1081)
T ss_pred             C-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhh--
Confidence            4 5566666666666666666622212    12222 566666666666666666555555  5666666654 2111  


Q ss_pred             HhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCC
Q 047985          363 FLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQ  442 (930)
Q Consensus       363 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~  442 (930)
                        ..+.+|+.|....|++.....                            .-++|+.|+.++|.++...+..    .-.
T Consensus       196 --s~~~~l~~l~c~rn~ls~l~~----------------------------~g~~l~~L~a~~n~l~~~~~~p----~p~  241 (1081)
T KOG0618|consen  196 --SNLANLEVLHCERNQLSELEI----------------------------SGPSLTALYADHNPLTTLDVHP----VPL  241 (1081)
T ss_pred             --hhccchhhhhhhhcccceEEe----------------------------cCcchheeeeccCcceeecccc----ccc
Confidence              334444444444443222110                            1233444444444444211111    112


Q ss_pred             CceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCc
Q 047985          443 NFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNK  522 (930)
Q Consensus       443 ~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~  522 (930)
                                         ++++++++.|+++ .+|++++.+ .+|+.+++.+|+++ .+|..+...++ |+.|.+.+|.
T Consensus       242 -------------------nl~~~dis~n~l~-~lp~wi~~~-~nle~l~~n~N~l~-~lp~ri~~~~~-L~~l~~~~ne  298 (1081)
T KOG0618|consen  242 -------------------NLQYLDISHNNLS-NLPEWIGAC-ANLEALNANHNRLV-ALPLRISRITS-LVSLSAAYNE  298 (1081)
T ss_pred             -------------------cceeeecchhhhh-cchHHHHhc-ccceEecccchhHH-hhHHHHhhhhh-HHHHHhhhhh
Confidence                               3344444444444 566777777 77888888888775 56666666664 7777888887


Q ss_pred             cccccCcccCCCCCccEEEccCccccccCCccccCCCC-CcEecccCccccccCcccccCCCCCcEEEccCCcccccCCC
Q 047985          523 FSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSN-LEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIRE  601 (930)
Q Consensus       523 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  601 (930)
                      +. -+|.......+|++|+|..|+|....+..|..... |+.|+.+.|++.......=...+.|+.|++.+|.++...-.
T Consensus       299 l~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p  377 (1081)
T KOG0618|consen  299 LE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP  377 (1081)
T ss_pred             hh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh
Confidence            77 56666666777888888888877444434444433 67777777777766422223566778888888888766544


Q ss_pred             CCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeeccccccccccccc
Q 047985          602 PKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDI  681 (930)
Q Consensus       602 ~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (930)
                      .+  .+++.|++|+|++|++. ++|...+.+|.                                              .
T Consensus       378 ~l--~~~~hLKVLhLsyNrL~-~fpas~~~kle----------------------------------------------~  408 (1081)
T KOG0618|consen  378 VL--VNFKHLKVLHLSYNRLN-SFPASKLRKLE----------------------------------------------E  408 (1081)
T ss_pred             hh--ccccceeeeeecccccc-cCCHHHHhchH----------------------------------------------H
Confidence            43  46778888888888875 67766554433                                              2


Q ss_pred             ccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccC-CccccCCCCCCeeecC
Q 047985          682 LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQI-PQQLVELTFLEFFNVS  760 (930)
Q Consensus       682 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~i-p~~l~~L~~L~~L~ls  760 (930)
                      |+.|+||+|.++ .+|.++.+++.|++|..-+|++. ..| .+.++++|+.+|+|.|+|+-.+ |.... -+.|++||++
T Consensus       409 LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlS  484 (1081)
T KOG0618|consen  409 LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLS  484 (1081)
T ss_pred             hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccccceeecc
Confidence            667777888877 67777777888888887777776 556 6777788888888888876443 33222 2677888888


Q ss_pred             CCc
Q 047985          761 DNH  763 (930)
Q Consensus       761 ~N~  763 (930)
                      +|.
T Consensus       485 GN~  487 (1081)
T KOG0618|consen  485 GNT  487 (1081)
T ss_pred             CCc
Confidence            775

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-34  Score=309.60  Aligned_cols=365  Identities=29%  Similarity=0.313  Sum_probs=210.9

Q ss_pred             CEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCC
Q 047985           97 EWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL  176 (930)
Q Consensus        97 ~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L  176 (930)
                      +.||+++|.+... -+..|.++++|+.+++.+|.++ .||...+...+|+.|+|.+|                       
T Consensus        81 ~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N-----------------------  135 (873)
T KOG4194|consen   81 QTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHN-----------------------  135 (873)
T ss_pred             eeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecc-----------------------
Confidence            3455555555544 3444555555555555555555 55544444444555555554                       


Q ss_pred             CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCC
Q 047985          177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQN  256 (930)
Q Consensus       177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  256 (930)
                              .|+..-.+.+..++.|+.|||+.|.++..-..+|..-.++++|+|++|.|+..-...|..+.+|..|.|++|
T Consensus       136 --------~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN  207 (873)
T KOG4194|consen  136 --------LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN  207 (873)
T ss_pred             --------ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence                    455555566666677777777777766444445555566777777777777666666777777777777777


Q ss_pred             CCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcc
Q 047985          257 NLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPS  336 (930)
Q Consensus       257 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  336 (930)
                      +++...+..|.++++|+.|+|..|++.-.---.|.++++|+.|.|..|.+...-...|..+.++++|+|+.|+++..-..
T Consensus       208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g  287 (873)
T KOG4194|consen  208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG  287 (873)
T ss_pred             cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence            77765566666677777777777776533334567777777777777777666666666677777777777777655555


Q ss_pred             cccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCC
Q 047985          337 SLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQH  416 (930)
Q Consensus       337 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~  416 (930)
                      ++.+++.|+.|++++|.+...-+                                                  +....++
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~--------------------------------------------------d~Wsftq  317 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHI--------------------------------------------------DSWSFTQ  317 (873)
T ss_pred             cccccchhhhhccchhhhheeec--------------------------------------------------chhhhcc
Confidence            66666666666666666542111                                                  1122334


Q ss_pred             CcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccc
Q 047985          417 HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYN  496 (930)
Q Consensus       417 ~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N  496 (930)
                      +|++|+|++|+|+.--+..+                                             ..+ ..|++|.|++|
T Consensus       318 kL~~LdLs~N~i~~l~~~sf---------------------------------------------~~L-~~Le~LnLs~N  351 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSF---------------------------------------------RVL-SQLEELNLSHN  351 (873)
T ss_pred             cceeEeccccccccCChhHH---------------------------------------------HHH-HHhhhhccccc
Confidence            44444444444442222211                                             122 44445555555


Q ss_pred             cccCcCcccccccccCCceeecCCCccccccCc---ccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccc
Q 047985          497 NLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD---NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD  573 (930)
Q Consensus       497 ~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  573 (930)
                      .+...-...|..+.+ |+.|||++|.+++.+.+   .|..+++|+.|+|.+|++..+...+|.++..|+.|||.+|.|..
T Consensus       352 si~~l~e~af~~lss-L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  352 SIDHLAEGAFVGLSS-LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             chHHHHhhHHHHhhh-hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence            444333334444442 55555555555444332   34445666666666666665555566666666666666666666


Q ss_pred             cCcccccCCCCCcEEEccC
Q 047985          574 IFPSWLGTLPDLNVLILKS  592 (930)
Q Consensus       574 ~~p~~l~~l~~L~~L~L~~  592 (930)
                      +-|..|..+ .|+.|.+..
T Consensus       431 Iq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  431 IQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             ecccccccc-hhhhhhhcc
Confidence            666666655 555555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=309.95  Aligned_cols=377  Identities=23%  Similarity=0.266  Sum_probs=220.4

Q ss_pred             CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCC
Q 047985          177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQN  256 (930)
Q Consensus       177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  256 (930)
                      +.|++++|.++...+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.|
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            34555555555555555555555555555555554 34443333344555555555555544455555555555555555


Q ss_pred             CCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcc
Q 047985          257 NLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPS  336 (930)
Q Consensus       257 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  336 (930)
                      .|+..--..|..-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.--.
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence            55432223344444555555555555544444455555555555555555544444444455555555555544322222


Q ss_pred             cccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCC
Q 047985          337 SLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQH  416 (930)
Q Consensus       337 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~  416 (930)
                      .|.++++|+.|.+..|.+.                          .+.+                        ..|..+.
T Consensus       240 tFqgL~Sl~nlklqrN~I~--------------------------kL~D------------------------G~Fy~l~  269 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDIS--------------------------KLDD------------------------GAFYGLE  269 (873)
T ss_pred             hhcCchhhhhhhhhhcCcc--------------------------cccC------------------------cceeeec
Confidence            3344444444444444332                          2211                        1234556


Q ss_pred             CcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccc
Q 047985          417 HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYN  496 (930)
Q Consensus       417 ~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N  496 (930)
                      ++++|+|+.|++...--.|++  .++.|+.|++|+|.+..+                  .+ +.. ...++|++|||++|
T Consensus       270 kme~l~L~~N~l~~vn~g~lf--gLt~L~~L~lS~NaI~ri------------------h~-d~W-sftqkL~~LdLs~N  327 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLF--GLTSLEQLDLSYNAIQRI------------------HI-DSW-SFTQKLKELDLSSN  327 (873)
T ss_pred             ccceeecccchhhhhhccccc--ccchhhhhccchhhhhee------------------ec-chh-hhcccceeEecccc
Confidence            666666766666655555555  666666666666655532                  11 111 22267888888888


Q ss_pred             cccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCc---cccCCCCCcEecccCccccc
Q 047985          497 NLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPR---SLANCSNLEFLDLGDNQIRD  573 (930)
Q Consensus       497 ~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~  573 (930)
                      +|+...+..|..+.. |++|+|++|+++..-...|..+.+|+.|||++|.+++.+.+   .|..+++|+.|++.+|++..
T Consensus       328 ~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~  406 (873)
T KOG4194|consen  328 RITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS  406 (873)
T ss_pred             ccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence            888777777777775 88888888888765556677778888888888888776543   47778888888888888888


Q ss_pred             cCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHH
Q 047985          574 IFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF  630 (930)
Q Consensus       574 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~  630 (930)
                      +.-..|.+++.|++|+|.+|.|..+-|..+  ..+ .|+.|-+..-.|-......|+
T Consensus       407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAF--e~m-~Lk~Lv~nSssflCDCql~Wl  460 (873)
T KOG4194|consen  407 IPKRAFSGLEALEHLDLGDNAIASIQPNAF--EPM-ELKELVMNSSSFLCDCQLKWL  460 (873)
T ss_pred             cchhhhccCcccceecCCCCcceeeccccc--ccc-hhhhhhhcccceEEeccHHHH
Confidence            877888888888888888888887766655  344 677776655555444333333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-35  Score=330.28  Aligned_cols=513  Identities=27%  Similarity=0.378  Sum_probs=311.2

Q ss_pred             EEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCC
Q 047985           98 WLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLK  177 (930)
Q Consensus        98 ~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~  177 (930)
                      .+|++...+.  .||..+..-..++.|+++.|.+-...-+.+.+.-+|+.||++.|.+        ..+|..+..+.+|+
T Consensus         2 ~vd~s~~~l~--~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~--------~~fp~~it~l~~L~   71 (1081)
T KOG0618|consen    2 HVDASDEQLE--LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI--------SSFPIQITLLSHLR   71 (1081)
T ss_pred             CcccccccCc--ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccccc--------ccCCchhhhHHHHh
Confidence            3567777665  3788887777799999999987633334445566699999999954        55666666677777


Q ss_pred             EEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCC
Q 047985          178 ELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN  257 (930)
Q Consensus       178 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  257 (930)
                      .|.++.|.+.. .|.+..++.+|++|.|.+|.+. ..|.++..+++|++|++++|.+. .+|..+..++.++.+..++|.
T Consensus        72 ~ln~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~  148 (1081)
T KOG0618|consen   72 QLNLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNE  148 (1081)
T ss_pred             hcccchhhHhh-Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcch
Confidence            77777766544 3455556666666666666555 45566666666666666666554 345555555555555555552


Q ss_pred             CCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCccc
Q 047985          258 LSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS  337 (930)
Q Consensus       258 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  337 (930)
                      ....    ++... ++.+++..|.+.+.++..+..++.  .|+|..|.+.   ..                        .
T Consensus       149 ~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~------------------------d  194 (1081)
T KOG0618|consen  149 KIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VL------------------------D  194 (1081)
T ss_pred             hhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hh------------------------h
Confidence            1111    11111 455555555555555444444444  4555555443   11                        2


Q ss_pred             ccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCC
Q 047985          338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHH  417 (930)
Q Consensus       338 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~  417 (930)
                      +..+.+|+.|....|++....      ...++|+.|+.++|.+.   .......+..+++++++.+++..+|.|+..+.+
T Consensus       195 ls~~~~l~~l~c~rn~ls~l~------~~g~~l~~L~a~~n~l~---~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~n  265 (1081)
T KOG0618|consen  195 LSNLANLEVLHCERNQLSELE------ISGPSLTALYADHNPLT---TLDVHPVPLNLQYLDISHNNLSNLPEWIGACAN  265 (1081)
T ss_pred             hhhccchhhhhhhhcccceEE------ecCcchheeeeccCcce---eeccccccccceeeecchhhhhcchHHHHhccc
Confidence            334444444444444443111      23344555555555443   111222345566666666666666677766666


Q ss_pred             cCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeeccccc
Q 047985          418 LELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNN  497 (930)
Q Consensus       418 L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~  497 (930)
                      |+.++..+|.++                                              .+|..+... .+|+.|++.+|.
T Consensus       266 le~l~~n~N~l~----------------------------------------------~lp~ri~~~-~~L~~l~~~~ne  298 (1081)
T KOG0618|consen  266 LEALNANHNRLV----------------------------------------------ALPLRISRI-TSLVSLSAAYNE  298 (1081)
T ss_pred             ceEecccchhHH----------------------------------------------hhHHHHhhh-hhHHHHHhhhhh
Confidence            666666666653                                              344444444 566666666666


Q ss_pred             ccCcCcccccccccCCceeecCCCccccccCccc-CCCC-CccEEEccCccccccCCccccCCCCCcEecccCccccccC
Q 047985          498 LSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNL-LKGN-ILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF  575 (930)
Q Consensus       498 l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~-~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  575 (930)
                      +. .+|.....+.. |++|+|..|+|. ..|+.+ .... +|+.|+.+.|++.......=.....|+.|.+.+|.+++..
T Consensus       299 l~-yip~~le~~~s-L~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  299 LE-YIPPFLEGLKS-LRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             hh-hCCCcccccce-eeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence            65 44555555554 666777666665 344322 2222 2566666666665332222234566778888888888776


Q ss_pred             cccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCC
Q 047985          576 PSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNE  655 (930)
Q Consensus       576 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~  655 (930)
                      -+.+.+.++|++|+|++|++.......  ..+++.|++|+||+|+++ .+|.. ...+.                     
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas~--~~kle~LeeL~LSGNkL~-~Lp~t-va~~~---------------------  430 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPASK--LRKLEELEELNLSGNKLT-TLPDT-VANLG---------------------  430 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHHH--HhchHHhHHHhcccchhh-hhhHH-HHhhh---------------------
Confidence            667777788888888888776553222  256778888888888887 56633 33322                     


Q ss_pred             CCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccc-cCcccccccCCCCeee
Q 047985          656 GNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHG-HIPSCLGNLTDLESLD  734 (930)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~Ld  734 (930)
                                               .|++|...+|++. ..| ++.+++.|+.+|+|+|+|+. .+|..... ++|++||
T Consensus       431 -------------------------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLd  482 (1081)
T KOG0618|consen  431 -------------------------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLD  482 (1081)
T ss_pred             -------------------------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceee
Confidence                                     3566777788886 667 88999999999999999986 34444333 7999999


Q ss_pred             CCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCCC
Q 047985          735 LSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQ  773 (930)
Q Consensus       735 Ls~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~~  773 (930)
                      |++|.-.-.--..|..+.++..+++.-|    .+|.+.+
T Consensus       483 lSGN~~l~~d~~~l~~l~~l~~~~i~~~----~~~d~~~  517 (1081)
T KOG0618|consen  483 LSGNTRLVFDHKTLKVLKSLSQMDITLN----NTPDGNV  517 (1081)
T ss_pred             ccCCcccccchhhhHHhhhhhheecccC----CCCcccc
Confidence            9999843333445666777777777776    5666543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.8e-33  Score=299.43  Aligned_cols=374  Identities=30%  Similarity=0.450  Sum_probs=216.0

Q ss_pred             cCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhh
Q 047985           91 FKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLA  170 (930)
Q Consensus        91 ~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l  170 (930)
                      +-|+..+-.|+++|+|+|...|.....++.++.|.|....+. .+|.+++.|.+|++|.+++|++..             
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-------------   69 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-------------   69 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-------------
Confidence            456778888999999988778888888888888888888877 788888888888888888884311             


Q ss_pred             hCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCC-CCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCC
Q 047985          171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR-GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK  249 (930)
Q Consensus       171 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  249 (930)
                                         +-..++.++.|+.+.+..|++. .-+|..+..+..|+.||||+|++. ..|..+..-+++.
T Consensus        70 -------------------vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~i  129 (1255)
T KOG0444|consen   70 -------------------VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSI  129 (1255)
T ss_pred             -------------------hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcE
Confidence                               1123556677777778777775 236666777777777777777765 3455566666666


Q ss_pred             EEEccCCCCCCCcch-hhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985          250 ELDLLQNNLSGELPN-SIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC  328 (930)
Q Consensus       250 ~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  328 (930)
                      +|+|++|+|. .||. .|.+++.|-.||||+|++. .+|..+..+.+|++|+|++|.+...--..+..+++|++|.+++.
T Consensus       130 VLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  130 VLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT  207 (1255)
T ss_pred             EEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence            6666666666 3333 3445666666666666654 34444555555555555555544322222223344444444443


Q ss_pred             ccc-CCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCC
Q 047985          329 KFS-GQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTE  407 (930)
Q Consensus       329 ~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~  407 (930)
                      +-+ ..+|.++..+.+|..+|++.|+                                                   +..
T Consensus       208 qRTl~N~Ptsld~l~NL~dvDlS~N~---------------------------------------------------Lp~  236 (1255)
T KOG0444|consen  208 QRTLDNIPTSLDDLHNLRDVDLSENN---------------------------------------------------LPI  236 (1255)
T ss_pred             cchhhcCCCchhhhhhhhhccccccC---------------------------------------------------CCc
Confidence            322 1233333333333333333332                                                   223


Q ss_pred             cchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccc
Q 047985          408 IPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNR  487 (930)
Q Consensus       408 ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~  487 (930)
                      +|+.+.++++|+.|+||+|+|+.                          +                    .-..... .+
T Consensus       237 vPecly~l~~LrrLNLS~N~ite--------------------------L--------------------~~~~~~W-~~  269 (1255)
T KOG0444|consen  237 VPECLYKLRNLRRLNLSGNKITE--------------------------L--------------------NMTEGEW-EN  269 (1255)
T ss_pred             chHHHhhhhhhheeccCcCceee--------------------------e--------------------eccHHHH-hh
Confidence            45555555666666666665542                          1                    1111111 34


Q ss_pred             cceeecccccccCcCcccccccccCCceeecCCCccc-cccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecc
Q 047985          488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFS-GTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDL  566 (930)
Q Consensus       488 L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  566 (930)
                      |++|++|.|+++ .+|+++.+++. |+.|.+.+|+++ .-||..++++..|+.+..++|.+. ..|+.++.|..|+.|.|
T Consensus       270 lEtLNlSrNQLt-~LP~avcKL~k-L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L  346 (1255)
T KOG0444|consen  270 LETLNLSRNQLT-VLPDAVCKLTK-LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL  346 (1255)
T ss_pred             hhhhccccchhc-cchHHHhhhHH-HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence            555555555554 44555555554 555555555543 235555555666666666665555 45566666666666666


Q ss_pred             cCccccccCcccccCCCCCcEEEccCCcccccCCCC
Q 047985          567 GDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREP  602 (930)
Q Consensus       567 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  602 (930)
                      +.|++... |+.+.-++.|.+|+|+.|+-.-..|.+
T Consensus       347 ~~NrLiTL-PeaIHlL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  347 DHNRLITL-PEAIHLLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             cccceeec-hhhhhhcCCcceeeccCCcCccCCCCc
Confidence            66665543 556666666666666666544444433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=6.9e-33  Score=297.46  Aligned_cols=251  Identities=27%  Similarity=0.406  Sum_probs=205.1

Q ss_pred             CcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcE
Q 047985           68 GHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAY  147 (930)
Q Consensus        68 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  147 (930)
                      .-|+.+|+++|.++|.--| .....++.++.|.|....+.  .+|..++.+.+|++|.+++|++. .+-.++..|+.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence            3589999999999975433 37889999999999998886  48999999999999999999988 56667888999999


Q ss_pred             EEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEE
Q 047985          148 LDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHL  227 (930)
Q Consensus       148 L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  227 (930)
                      +++.+|.+.                              ...+|..+.++..|+.|||++|++. ..|..+..-+++-.|
T Consensus        83 v~~R~N~LK------------------------------nsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVL  131 (1255)
T KOG0444|consen   83 VIVRDNNLK------------------------------NSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVL  131 (1255)
T ss_pred             Hhhhccccc------------------------------cCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEE
Confidence            999988431                              2335666777788888888888887 678888888888888


Q ss_pred             EccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985          228 DLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS  307 (930)
Q Consensus       228 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  307 (930)
                      +||+|+|..+....+.+++.|-.|+|++|++. .+|..+..+.+|++|+|++|.+.-.--..+..+++|++|.+++.+-+
T Consensus       132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT  210 (1255)
T KOG0444|consen  132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT  210 (1255)
T ss_pred             EcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence            88888888665566778888888899999887 66777888889999999998876443345566778888888887644


Q ss_pred             -CccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCC
Q 047985          308 -GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS  355 (930)
Q Consensus       308 -~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  355 (930)
                       ..+|.++..+.+|..+|++.|.+. .+|+.+.++++|+.|+|++|+++
T Consensus       211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence             367888999999999999999988 78888999999999999998876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=3.1e-25  Score=228.46  Aligned_cols=412  Identities=25%  Similarity=0.287  Sum_probs=213.0

Q ss_pred             CCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccC-CCCCCCCCCCCCCCcCCcEEEc
Q 047985          223 RLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSL-NRFLGKVPSSLGNLTQLHWLSL  301 (930)
Q Consensus       223 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L  301 (930)
                      .-..++|..|+|+...+.+|+.+++|+.|+|++|+|+..-|.+|..+++|..|-+.+ |+|+......|+++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            345566666666666666666666666666666666666666666666666555544 6666555566677777777777


Q ss_pred             cCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCccc
Q 047985          302 ASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLS  381 (930)
Q Consensus       302 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~  381 (930)
                      .-|++.-.....|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+...-...+.       .. ++..+   
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl-------a~-~~a~~---  216 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL-------AD-DLAMN---  216 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh-------hh-HHhhc---
Confidence            77777666666677777777777777776633333666677777777777665322111100       00 00000   


Q ss_pred             ccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCC
Q 047985          382 LLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHP  461 (930)
Q Consensus       382 ~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  461 (930)
                                                 |..++......-..+.+.++...-+..+.                        
T Consensus       217 ---------------------------~ietsgarc~~p~rl~~~Ri~q~~a~kf~------------------------  245 (498)
T KOG4237|consen  217 ---------------------------PIETSGARCVSPYRLYYKRINQEDARKFL------------------------  245 (498)
T ss_pred             ---------------------------hhhcccceecchHHHHHHHhcccchhhhh------------------------
Confidence                                       00001111111111111111111111100                        


Q ss_pred             CcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCc-ccccccccCCceeecCCCccccccCcccCCCCCccEE
Q 047985          462 NTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP-QCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVI  540 (930)
Q Consensus       462 ~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  540 (930)
                                          +.. ..+..--.+.+...++-| .+|..++. |+.|+|++|++++.-+.+|.+...+++|
T Consensus       246 --------------------c~~-esl~s~~~~~d~~d~~cP~~cf~~L~~-L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  246 --------------------CSL-ESLPSRLSSEDFPDSICPAKCFKKLPN-LRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             --------------------hhH-HhHHHhhccccCcCCcChHHHHhhccc-ceEeccCCCccchhhhhhhcchhhhhhh
Confidence                                000 011111111122222222 34666664 7777777777777777777777777777


Q ss_pred             EccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCccccc-------------CCCCCccCC
Q 047985          541 DLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGL-------------IREPKTDCG  607 (930)
Q Consensus       541 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-------------~~~~~~~~~  607 (930)
                      .|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|+|-.|++.-.             .......|+
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq  383 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ  383 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCC
Confidence            7777777766666777788888888888888887777787777888888777765311             000000121


Q ss_pred             -CCCceEEECCCCcCcc---cCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeeccccccccccccccc
Q 047985          608 -FPKLRIIDLSKNRFTG---KLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILT  683 (930)
Q Consensus       608 -l~~L~~LdLs~N~l~g---~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  683 (930)
                       ...++.++++++.+..   .-|++          ..+....+-+      ..-.-....+..++++...-..++|...+
T Consensus       384 ~p~~~~~~~~~dv~~~~~~c~~~ee----------~~~~~s~~cP------~~c~c~~tVvRcSnk~lk~lp~~iP~d~t  447 (498)
T KOG4237|consen  384 SPGFVRQIPISDVAFGDFRCGGPEE----------LGCLTSSPCP------PPCTCLDTVVRCSNKLLKLLPRGIPVDVT  447 (498)
T ss_pred             CCchhccccchhccccccccCCccc----------cCCCCCCCCC------CCcchhhhhHhhcccchhhcCCCCCchhH
Confidence             2245566666655431   11111          0000000000      00001112223334444444445555566


Q ss_pred             EEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCC
Q 047985          684 AVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNN  738 (930)
Q Consensus       684 ~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N  738 (930)
                      ++++.+|.++ .+|.+  .+.+| .+|+|+|+++..--..|.+|++|.+|-||+|
T Consensus       448 elyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  448 ELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             HHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            6666666665 55554  44555 5566666555444455555555555555554

>PLN03210 Resistant to P

Probab=99.89  E-value=1.7e-21  Score=247.14  Aligned_cols=359  Identities=22%  Similarity=0.250  Sum_probs=275.2

Q ss_pred             CcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCC-----CCCchhccCCC-CCCEEEccCCCCCccCCccccC
Q 047985           68 GHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDG-----SEIPPEIINLS-SLSYLNLSSAAFSGQIPSEILE  141 (930)
Q Consensus        68 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~ip~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~  141 (930)
                      .+|..+.+.-..+........++.++++|+.|.+..+.+..     ..+|..+..++ +|+.|++.++.+. .+|..+ .
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~  609 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R  609 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence            46777666544443221122368899999999997664321     13677777764 6999999999886 788777 5


Q ss_pred             CCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCC
Q 047985          142 LSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNI  221 (930)
Q Consensus       142 l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  221 (930)
                      ..+|++|++++|.+        ..++..+..+++|+.|+++++.....+|. ++.+++|++|+|++|.....+|..+.++
T Consensus       610 ~~~L~~L~L~~s~l--------~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        610 PENLVKLQMQGSKL--------EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             ccCCcEEECcCccc--------cccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhcc
Confidence            78999999999964        34556678899999999998876666664 8889999999999998777899999999


Q ss_pred             CCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEc
Q 047985          222 TRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSL  301 (930)
Q Consensus       222 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  301 (930)
                      ++|+.|++++|..-..+|..+ ++++|+.|++++|...+.+|..   .++|+.|++++|.+. .+|..+ .+++|++|++
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l  754 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELIL  754 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccc
Confidence            999999999986556677655 7899999999999776666643   468999999999976 566655 6788999988


Q ss_pred             cCCCCC-------CccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEE
Q 047985          302 ASNDFS-------GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLF  374 (930)
Q Consensus       302 s~N~l~-------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~  374 (930)
                      .++...       ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..   ..+++|+.|+
T Consensus       755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~  831 (1153)
T PLN03210        755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLD  831 (1153)
T ss_pred             cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEE
Confidence            874321       112222334578999999999888889999999999999999998766667654   2688999999


Q ss_pred             ccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCc
Q 047985          375 LSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHN  452 (930)
Q Consensus       375 Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N  452 (930)
                      +++|..  ....+.  ...+++.|+++++.+..+|.++..+++|+.|++++|.-...+|....  .+++|+.+++++|
T Consensus       832 Ls~c~~--L~~~p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~C  903 (1153)
T PLN03210        832 LSGCSR--LRTFPD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSDC  903 (1153)
T ss_pred             CCCCCc--cccccc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc--cccCCCeeecCCC
Confidence            999842  221111  24678899999999999999999999999999998655555666554  6777888887776

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=1.4e-21  Score=247.82  Aligned_cols=345  Identities=22%  Similarity=0.285  Sum_probs=178.3

Q ss_pred             cccCCCCCcEEEccCCC------CCCchhhhhcCCC-CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCC
Q 047985          217 SLGNITRLIHLDLSFNK------LSDELPTFIGTLG-SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSS  289 (930)
Q Consensus       217 ~l~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  289 (930)
                      +|.++++|+.|.+..+.      +...+|..+..++ +|+.|.+.++.+. .+|..| ...+|+.|++.+|++. .++..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            34555555555554332      1122344444432 4666666666554 445554 3456666666666654 34555


Q ss_pred             CCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhcccc
Q 047985          290 LGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKL  369 (930)
Q Consensus       290 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  369 (930)
                      +..+++|+.|+|+++.....+|. ++.+++|++|+|++|.....+|..+..+++|+.|++++|...+.+|..   .++++
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~s  705 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG---INLKS  705 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc---CCCCC
Confidence            56666666666666554444443 555666666666666555566666666666666666665544444432   14455


Q ss_pred             ccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEec
Q 047985          370 LYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNL  449 (930)
Q Consensus       370 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~L  449 (930)
                      |+.|++++|..  ..                      .+|..   ..+|+.|++++|.+. .+|..+   .+++|..|.+
T Consensus       706 L~~L~Lsgc~~--L~----------------------~~p~~---~~nL~~L~L~~n~i~-~lP~~~---~l~~L~~L~l  754 (1153)
T PLN03210        706 LYRLNLSGCSR--LK----------------------SFPDI---STNISWLDLDETAIE-EFPSNL---RLENLDELIL  754 (1153)
T ss_pred             CCEEeCCCCCC--cc----------------------ccccc---cCCcCeeecCCCccc-cccccc---cccccccccc
Confidence            55555555521  11                      11111   123444444444443 233322   2344444444


Q ss_pred             cCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCc
Q 047985          450 SHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD  529 (930)
Q Consensus       450 s~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~  529 (930)
                      .++....+.            +.+. .++......+++|+.|++++|...+.+|..++++++ |+.|++++|...+.+|.
T Consensus       755 ~~~~~~~l~------------~~~~-~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~-L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        755 CEMKSEKLW------------ERVQ-PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK-LEHLEIENCINLETLPT  820 (1153)
T ss_pred             cccchhhcc------------cccc-ccchhhhhccccchheeCCCCCCccccChhhhCCCC-CCEEECCCCCCcCeeCC
Confidence            332211000            0000 111111112245666666666666566666666664 66666666554445555


Q ss_pred             ccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCC
Q 047985          530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFP  609 (930)
Q Consensus       530 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  609 (930)
                      .+ .+++|+.|++++|.....+|..   .++|+.|+|++|.++. +|.++..+++|++|+|++|+-...+|...  ..++
T Consensus       821 ~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~  893 (1153)
T PLN03210        821 GI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNI--SKLK  893 (1153)
T ss_pred             CC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCccc--cccc
Confidence            44 4566666666666544444432   2456667777776654 36666667777777776643333333332  4566


Q ss_pred             CceEEECCCCc
Q 047985          610 KLRIIDLSKNR  620 (930)
Q Consensus       610 ~L~~LdLs~N~  620 (930)
                      +|+.+++++|.
T Consensus       894 ~L~~L~l~~C~  904 (1153)
T PLN03210        894 HLETVDFSDCG  904 (1153)
T ss_pred             CCCeeecCCCc
Confidence            67777776664

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=2e-24  Score=222.61  Aligned_cols=416  Identities=21%  Similarity=0.208  Sum_probs=264.6

Q ss_pred             CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccC-CCCCCccCcccccccccceeec
Q 047985          247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLAS-NDFSGELPASFGNLRSLRTLDV  325 (930)
Q Consensus       247 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L  325 (930)
                      .-.+++|..|+|+...|.+|..+++|+.|||++|+|+.+-|++|..+.+|..|-+.+ |+|+......|+++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            567788888888877777888888888888888888888888888888877776666 7777666667788888888888


Q ss_pred             ccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCC
Q 047985          326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL  405 (930)
Q Consensus       326 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l  405 (930)
                      .-|++.-.....|..+++|..|.+..|.+.. ++..                                            
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~~~--------------------------------------------  182 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQS-ICKG--------------------------------------------  182 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhh-hccc--------------------------------------------
Confidence            8888776666677777777777777666541 1110                                            


Q ss_pred             CCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcc
Q 047985          406 TEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLS  485 (930)
Q Consensus       406 ~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~  485 (930)
                           .+..+..++.+.+..|.+-..-       +++.+... +.                         ..|..+... 
T Consensus       183 -----tf~~l~~i~tlhlA~np~icdC-------nL~wla~~-~a-------------------------~~~ietsga-  223 (498)
T KOG4237|consen  183 -----TFQGLAAIKTLHLAQNPFICDC-------NLPWLADD-LA-------------------------MNPIETSGA-  223 (498)
T ss_pred             -----cccchhccchHhhhcCcccccc-------ccchhhhH-Hh-------------------------hchhhcccc-
Confidence                 1223334444444444421000       11111000 00                         001111111 


Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccC-cccCCCCCccEEEccCccccccCCccccCCCCCcEe
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP-DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFL  564 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  564 (930)
                      ....-..+.++++..+-+..|......+..--.+.+...+.-| ..|..+++|+.|+|++|+++++-+.+|.+...+++|
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence            2222233344444433333333221112222233444454555 468889999999999999999999999999999999


Q ss_pred             cccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhccccee-c---c
Q 047985          565 DLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKV-V---N  640 (930)
Q Consensus       565 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~-l---~  640 (930)
                      .|..|+|...-...|.++..|++|+|.+|+|+...|..+  ..+.+|.+|.|-.|++....-..++..|-.-+. .   .
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~  381 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR  381 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--cccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence            999999999888889999999999999999999887666  678899999999999987776666665432221 0   1


Q ss_pred             ccccccccccccCCCCCccceeeeEeeeccccccc-----ccccc---cc-cEEEcccccccccCchhcccccccceeec
Q 047985          641 ASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSY-----KKIPD---IL-TAVILSSNRFDGEIPTSISNLKGLQILSL  711 (930)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~L-~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L  711 (930)
                      +....+.....       +.+....-...+...+.     ..-|+   -+ ++...|++.++ .+|..+-  ..-.+|++
T Consensus       382 Cq~p~~~~~~~-------~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl  451 (498)
T KOG4237|consen  382 CQSPGFVRQIP-------ISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYL  451 (498)
T ss_pred             CCCCchhcccc-------chhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhc
Confidence            11111111000       00000000000000000     00011   12 23345555554 5665553  35568999


Q ss_pred             cCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCC
Q 047985          712 ADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDN  762 (930)
Q Consensus       712 s~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N  762 (930)
                      .+|.++ .+|..  .+.+| .+|||+|+++-.--..|.++++|.+|-+|||
T Consensus       452 ~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  452 DGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             ccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            999998 78887  67888 9999999999887888999999999999997

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.4e-21  Score=229.47  Aligned_cols=202  Identities=27%  Similarity=0.328  Sum_probs=129.7

Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      ++|+.|++++|.++. +|..+    ..|+.|++++|+++ .+|..   .++|+.|++++|++++ +|..   ..+|+.|+
T Consensus       262 ~sL~~L~Ls~N~L~~-Lp~lp----~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~  328 (788)
T PRK15387        262 PGLLELSIFSNPLTH-LPALP----SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLW  328 (788)
T ss_pred             cccceeeccCCchhh-hhhch----hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccc
Confidence            456677777776652 33321    13666777777766 34432   3557777777777764 3322   23466677


Q ss_pred             ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccc
Q 047985          566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR  645 (930)
Q Consensus       566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~  645 (930)
                      +++|+++++ |..   ..+|+.|+|++|+|++.. .     ..++|+.|++++|.++ .+|..                 
T Consensus       329 Ls~N~L~~L-P~l---p~~Lq~LdLS~N~Ls~LP-~-----lp~~L~~L~Ls~N~L~-~LP~l-----------------  380 (788)
T PRK15387        329 AYNNQLTSL-PTL---PSGLQELSVSDNQLASLP-T-----LPSELYKLWAYNNRLT-SLPAL-----------------  380 (788)
T ss_pred             cccCccccc-ccc---ccccceEecCCCccCCCC-C-----CCcccceehhhccccc-cCccc-----------------
Confidence            777777653 321   246777777777777542 1     1245677777777776 24421                 


Q ss_pred             cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCccccc
Q 047985          646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG  725 (930)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~  725 (930)
                                                       +..|+.|+|++|+|++ +|...   +.|+.|++++|+|+ .+|... 
T Consensus       381 ---------------------------------~~~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Ls-sIP~l~-  421 (788)
T PRK15387        381 ---------------------------------PSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLT-SLPMLP-  421 (788)
T ss_pred             ---------------------------------ccccceEEecCCcccC-CCCcc---cCCCEEEccCCcCC-CCCcch-
Confidence                                             2336778888888874 55433   56778888888887 466543 


Q ss_pred             ccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCC
Q 047985          726 NLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQ  770 (930)
Q Consensus       726 ~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~  770 (930)
                        .+|+.|+|++|+|+ .+|..+.+++.|+.|+|++|+|+|.+|.
T Consensus       422 --~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        422 --SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             --hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence              45677888888887 6788888888888888888888887775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=7e-21  Score=223.73  Aligned_cols=227  Identities=28%  Similarity=0.377  Sum_probs=152.9

Q ss_pred             CCceEEeccCccCcCCCC-CCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCC
Q 047985          442 QNFGHLNLSHNFLTGFDQ-HPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQH  520 (930)
Q Consensus       442 ~~L~~L~Ls~N~l~~~~~-~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~  520 (930)
                      ++|++|++++|+++.++. .++|+.|++++|.+. .+|..    +.+|+.|++++|+++. +|..   .+ +|+.|++++
T Consensus       242 ~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~~---p~-~L~~LdLS~  311 (788)
T PRK15387        242 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT-HLPAL----PSGLCKLWIFGNQLTS-LPVL---PP-GLQELSVSD  311 (788)
T ss_pred             CCCcEEEecCCccCcccCcccccceeeccCCchh-hhhhc----hhhcCEEECcCCcccc-cccc---cc-ccceeECCC
Confidence            344444444444443322 234445555555444 33331    1457778888888773 4432   23 388888888


Q ss_pred             CccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCC
Q 047985          521 NKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIR  600 (930)
Q Consensus       521 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  600 (930)
                      |++++ +|..   ...|+.|++++|++++ +|..   ..+|+.|+|++|+|+++ |..   .++|+.|++++|++++. |
T Consensus       312 N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~L-P  378 (788)
T PRK15387        312 NQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTSL-P  378 (788)
T ss_pred             Ccccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCCC-CCC---CcccceehhhccccccC-c
Confidence            88874 4432   2357778888888874 4432   24788888888888864 332   35677888888888863 3


Q ss_pred             CCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccc
Q 047985          601 EPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPD  680 (930)
Q Consensus       601 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (930)
                      ..     .++|+.|++++|++++ +|..                                                  +.
T Consensus       379 ~l-----~~~L~~LdLs~N~Lt~-LP~l--------------------------------------------------~s  402 (788)
T PRK15387        379 AL-----PSGLKELIVSGNRLTS-LPVL--------------------------------------------------PS  402 (788)
T ss_pred             cc-----ccccceEEecCCcccC-CCCc--------------------------------------------------cc
Confidence            21     3578999999998873 5521                                                  23


Q ss_pred             cccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCC
Q 047985          681 ILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELT  752 (930)
Q Consensus       681 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~  752 (930)
                      .|+.|++++|+|++ +|...   ..|+.|+|++|+++ .+|..+.++++|+.|+|++|+|+|.+|..+..+.
T Consensus       403 ~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  469 (788)
T ss_pred             CCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence            47889999999984 77543   46788999999998 7899999999999999999999999988875543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=2.5e-19  Score=212.33  Aligned_cols=244  Identities=30%  Similarity=0.482  Sum_probs=127.8

Q ss_pred             ceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCC
Q 047985          396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTG  475 (930)
Q Consensus       396 ~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g  475 (930)
                      ..|++.++.++.+|..+.  ++|+.|+|++|+++ .+|..+.    .+|+.|++++|+++                    
T Consensus       181 ~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~Lt--------------------  233 (754)
T PRK15370        181 TELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLT--------------------  233 (754)
T ss_pred             eEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccc--------------------
Confidence            345555555555554332  35666666666665 3443322    34555555554443                    


Q ss_pred             CCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccc
Q 047985          476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSL  555 (930)
Q Consensus       476 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  555 (930)
                      .+|..+.   .+|+.|+|++|++. .+|..+..   +|+.|++++|+++ .+|..+.  .+|+.|++++|++++ +|..+
T Consensus       234 sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~s---~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l  302 (754)
T PRK15370        234 SIPATLP---DTIQEMELSINRIT-ELPERLPS---ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL  302 (754)
T ss_pred             cCChhhh---ccccEEECcCCccC-cCChhHhC---CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc
Confidence            3333322   34666666666665 44544331   3666666666666 3555443  356666666666663 33333


Q ss_pred             cCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhccc
Q 047985          556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNA  635 (930)
Q Consensus       556 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~  635 (930)
                      .  ++|+.|++++|+++.. |..+  .++|+.|++++|.+++. |..+    .++|+.|++++|+++ .+|...      
T Consensus       303 p--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~L-P~~l----~~sL~~L~Ls~N~L~-~LP~~l------  365 (754)
T PRK15370        303 P--SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTSL-PASL----PPELQVLDVSKNQIT-VLPETL------  365 (754)
T ss_pred             h--hhHHHHHhcCCccccC-Cccc--cccceeccccCCccccC-Chhh----cCcccEEECCCCCCC-cCChhh------
Confidence            2  3566666666666643 3222  24566666666666542 3222    245666666666665 344210      


Q ss_pred             ceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCcc
Q 047985          636 MKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNS  715 (930)
Q Consensus       636 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  715 (930)
                                                                 ++.|+.|+|++|+|+ .+|..+.  ..|+.|++++|+
T Consensus       366 -------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~  399 (754)
T PRK15370        366 -------------------------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNN  399 (754)
T ss_pred             -------------------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCC
Confidence                                                       123566666666666 4454443  246666666666


Q ss_pred             ccccCcccc----cccCCCCeeeCCCCcCc
Q 047985          716 LHGHIPSCL----GNLTDLESLDLSNNRFS  741 (930)
Q Consensus       716 l~g~ip~~l----~~L~~L~~LdLs~N~ls  741 (930)
                      |+ .+|..+    +.++.+..|+|.+|.++
T Consensus       400 L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        400 LV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            65 334332    33355666666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=8.1e-18  Score=199.54  Aligned_cols=293  Identities=21%  Similarity=0.290  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccc----------------eEecCCCCcEE
Q 047985            8 GDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDG----------------VQCNENTGHVI   71 (930)
Q Consensus         8 ~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~g----------------v~C~~~~~~v~   71 (930)
                      ++|.+.+++..+.+..|...           ...-..|..    .+++|.-..                |.|..  +.|+
T Consensus        62 ~~~~~~~~~~~~~l~~p~~~-----------~~~~~~~~~----~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt  124 (754)
T PRK15370         62 PEEIKSKFECLRMLAFPAYA-----------DNIQYSRGG----ADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVT  124 (754)
T ss_pred             HHHHHHHHHHHHHhcCCchh-----------hccccccCC----CCcccccCCcchhhheeeecCCceEEecCC--Cccc
Confidence            46888999999999766420           011234876    678886554                66743  4677


Q ss_pred             EEEcCCCCCcccccCccc-------------------------------ccCCCCCCEEECCCCCCCCCCCchhccCCCC
Q 047985           72 KLDLSSSCLQGSINSSSS-------------------------------LFKLVHLEWLDLAFNDFDGSEIPPEIINLSS  120 (930)
Q Consensus        72 ~L~L~~~~l~g~~~~~~~-------------------------------l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~  120 (930)
                      .+..-+............                               -+-..+...|+++++.++.  +|..+.  ++
T Consensus       125 ~l~~~g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts--LP~~Ip--~~  200 (754)
T PRK15370        125 YTRVTESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT--IPACIP--EQ  200 (754)
T ss_pred             ccccccccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc--CCcccc--cC
Confidence            777665332211100000                               0111345556666655553  444332  35


Q ss_pred             CCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCC
Q 047985          121 LSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSL  200 (930)
Q Consensus       121 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  200 (930)
                      |++|+|++|.++ .+|..+.  ++|++|++++|.+.        .+|..+.  .+|+.|++++|.+. .+|..+.  .+|
T Consensus       201 L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt--------sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L  264 (754)
T PRK15370        201 ITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT--------SIPATLP--DTIQEMELSINRIT-ELPERLP--SAL  264 (754)
T ss_pred             CcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc--------cCChhhh--ccccEEECcCCccC-cCChhHh--CCC
Confidence            666666666665 4454432  35666666665431        2222211  24555555555554 3343332  345


Q ss_pred             CEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCC
Q 047985          201 TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN  280 (930)
Q Consensus       201 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  280 (930)
                      +.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++. +|..+.  ++|+.|++++|
T Consensus       265 ~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N  335 (754)
T PRK15370        265 QSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGEN  335 (754)
T ss_pred             CEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCC
Confidence            55555555555 2344332  345555555555543 222221  245555555555552 333221  34555555555


Q ss_pred             CCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCC
Q 047985          281 RFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS  355 (930)
Q Consensus       281 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  355 (930)
                      .+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|++|+|++|+++ .+|..+.  ..|+.|++++|+++
T Consensus       336 ~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~  401 (754)
T PRK15370        336 ALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV  401 (754)
T ss_pred             cccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence            5543 333332  45555555555554 2333331  34555555555554 2333322  23445555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=7.2e-19  Score=194.06  Aligned_cols=279  Identities=23%  Similarity=0.225  Sum_probs=146.0

Q ss_pred             EECCCCCCCCCCCchhccCCCCCCEEEccCCCCCcc----CCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCC
Q 047985           99 LDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQ----IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLT  174 (930)
Q Consensus        99 L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~  174 (930)
                      |+|..+.+++...+..+..+.+|++|+++++.+++.    ++..+...+.|++|+++++.+.. .......++..+.+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcC
Confidence            444444444333444444445555555555554321    33334444555555555553210 0000012334455556


Q ss_pred             CCCEEEcCCccCCCCCchhccCCCC---CCEEEccCCCCCC----CCcccccCC-CCCcEEEccCCCCCCc----hhhhh
Q 047985          175 NLKELVLGDVTISSPIPHNLTYLSS---LTTLSLSGCDLRG----RIPSSLGNI-TRLIHLDLSFNKLSDE----LPTFI  242 (930)
Q Consensus       175 ~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l  242 (930)
                      +|++|++++|.+....+..+..+.+   |++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            6666666666665544444444333   6666666666652    122334455 6677777777766632    23345


Q ss_pred             cCCCCCCEEEccCCCCCCC----cchhhcCCCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCCCCCccCccc
Q 047985          243 GTLGSLKELDLLQNNLSGE----LPNSIGNLASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASNDFSGELPASF  314 (930)
Q Consensus       243 ~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  314 (930)
                      ..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.....+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            5566677777777776642    233445556777777777766533    22345566677777777777665222222


Q ss_pred             c-----cccccceeecccccccC----CCcccccCCCCCCEEEccCCCCCCCCchh--HHhhcc-ccccEEEccCC
Q 047985          315 G-----NLRSLRTLDVYECKFSG----QIPSSLSNLTHLSFLDFSLNNFSGKMDLD--IFLVNH-KLLYHLFLSTN  378 (930)
Q Consensus       315 ~-----~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~~-~~L~~L~Ls~n  378 (930)
                      .     ..+.|++|++++|.++.    .+...+..+++|+.+++++|.++......  ...... +.|+.+++.+|
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            1     13577777777777652    22334555677777777777776432111  111122 45666666555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.6e-18  Score=191.21  Aligned_cols=256  Identities=25%  Similarity=0.274  Sum_probs=171.6

Q ss_pred             EEEccCCCCC-ccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCC------CCchhcc
Q 047985          123 YLNLSSAAFS-GQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISS------PIPHNLT  195 (930)
Q Consensus       123 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~------~~~~~l~  195 (930)
                      .|+|..+.++ +..+..+..+++|++|+++++.+.+.-   ...++..+...++|++++++++.+.+      .++..+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~---~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~   78 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEA---AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT   78 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHH---HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence            4778888887 445566677888999999999543211   13456677788889999999888763      2345667


Q ss_pred             CCCCCCEEEccCCCCCCCCcccccCCCC---CcEEEccCCCCCC----chhhhhcCC-CCCCEEEccCCCCCCC----cc
Q 047985          196 YLSSLTTLSLSGCDLRGRIPSSLGNITR---LIHLDLSFNKLSD----ELPTFIGTL-GSLKELDLLQNNLSGE----LP  263 (930)
Q Consensus       196 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p  263 (930)
                      .+++|++|++++|.+.+..+..+..+.+   |++|++++|.+++    .+...+..+ ++|++|++++|.+++.    ++
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            7889999999998887666655555544   8999998888874    233455666 7888888888888743    34


Q ss_pred             hhhcCCCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCCCCCc----cCcccccccccceeecccccccCCCc
Q 047985          264 NSIGNLASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASNDFSGE----LPASFGNLRSLRTLDVYECKFSGQIP  335 (930)
Q Consensus       264 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p  335 (930)
                      ..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++...
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            4566777888888888887742    233345556888888888887643    23345566778888888877765322


Q ss_pred             cccc-----CCCCCCEEEccCCCCCC--CCchhHHhhccccccEEEccCCccc
Q 047985          336 SSLS-----NLTHLSFLDFSLNNFSG--KMDLDIFLVNHKLLYHLFLSTNRLS  381 (930)
Q Consensus       336 ~~l~-----~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n~l~  381 (930)
                      ..+.     ..+.|+.|++++|.++.  ..+.......++.|+.+++++|.+.
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            2221     23677777777777762  2222222344456666666666544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.59  E-value=1.8e-15  Score=179.36  Aligned_cols=117  Identities=38%  Similarity=0.673  Sum_probs=105.7

Q ss_pred             ccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCC
Q 047985          682 LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSD  761 (930)
Q Consensus       682 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~  761 (930)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|++|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCC--CcCccCCcccCCCCCCCCCCCCCCCC
Q 047985          762 NHFTGPIPQGK--QFATFDKTSFDGNSGLCGRPLSSECE  798 (930)
Q Consensus       762 N~L~g~iP~~~--~~~~~~~~s~~gn~~Lcg~~l~~~c~  798 (930)
                      |+++|.+|...  .+.......+.||+++||.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999752  12233455789999999987656674

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=5e-17  Score=149.37  Aligned_cols=161  Identities=35%  Similarity=0.606  Sum_probs=96.8

Q ss_pred             CccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEE
Q 047985          536 ILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIID  615 (930)
Q Consensus       536 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ld  615 (930)
                      ..+.|.|++|+++ .+|..+..+.+|+.|++++|+|... |..++.+++|+.|+++-|++.-. |  ..+..+|.|++||
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~~l-p--rgfgs~p~levld  108 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLNIL-P--RGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhc-ChhhhhchhhhheecchhhhhcC-c--cccCCCchhhhhh
Confidence            3344444444444 2333445555555555555555443 44455555555555555555432 2  2235566677777


Q ss_pred             CCCCcCcc-cCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccc
Q 047985          616 LSKNRFTG-KLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDG  694 (930)
Q Consensus       616 Ls~N~l~g-~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g  694 (930)
                      |++|+++. .+|...|.                                               +..|+.|+|+.|.|. 
T Consensus       109 ltynnl~e~~lpgnff~-----------------------------------------------m~tlralyl~dndfe-  140 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFY-----------------------------------------------MTTLRALYLGDNDFE-  140 (264)
T ss_pred             ccccccccccCCcchhH-----------------------------------------------HHHHHHHHhcCCCcc-
Confidence            77776653 22322110                                               123566777777776 


Q ss_pred             cCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCC
Q 047985          695 EIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVEL  751 (930)
Q Consensus       695 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L  751 (930)
                      .+|..++++++||.|.+..|.+. ..|..++.|++|+.|.+.+|+++ .+|+.++++
T Consensus       141 ~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  141 ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            67777888888888888888877 67778888888888888888887 566666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=7e-17  Score=148.46  Aligned_cols=158  Identities=31%  Similarity=0.510  Sum_probs=97.7

Q ss_pred             cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985           89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN  168 (930)
Q Consensus        89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  168 (930)
                      .+..+.+++.|.||+|.++.  +|+.+..+.+|+.|++++|++. .+|.+++.+++|++|+++-|++             
T Consensus        28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-------------   91 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-------------   91 (264)
T ss_pred             cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-------------
Confidence            45566677777777777763  5677777777888888777777 6777777777777777776642             


Q ss_pred             hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCC-CCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCC
Q 047985          169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR-GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGS  247 (930)
Q Consensus       169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  247 (930)
                                         ...|..|+.++.|+.|||.+|++. ..+|..|..++.|+.|.+++|.+. .+|..++++++
T Consensus        92 -------------------~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~  151 (264)
T KOG0617|consen   92 -------------------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN  151 (264)
T ss_pred             -------------------hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc
Confidence                               123445555555555555555554 235555555666666666666654 44455555555


Q ss_pred             CCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCC
Q 047985          248 LKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFL  283 (930)
Q Consensus       248 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  283 (930)
                      |+.|.+..|.+. .+|..++.++.|+.|.+.+|+++
T Consensus       152 lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  152 LQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             eeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            555555555554 44555555555555555555544

>PLN03150 hypothetical protein; Provisional

Probab=99.51  E-value=9.7e-14  Score=164.69  Aligned_cols=125  Identities=34%  Similarity=0.547  Sum_probs=96.0

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCC----cccceEecC--CCC--cEEEEEcC
Q 047985            5 LCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCC----SWDGVQCNE--NTG--HVIKLDLS   76 (930)
Q Consensus         5 ~c~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C----~w~gv~C~~--~~~--~v~~L~L~   76 (930)
                      .+.++|.+||++||+++..+.                ..+|..     ..||    .|.||.|..  ..+  +|+.|+|+
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~----------------~~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~  426 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPL----------------RFGWNG-----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLD  426 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCcc----------------cCCCCC-----CCCCCcccccccceeeccCCCCceEEEEEECC
Confidence            456789999999999986432                247964     2342    799999953  222  58889999


Q ss_pred             CCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCC
Q 047985           77 SSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHN  153 (930)
Q Consensus        77 ~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  153 (930)
                      ++.+.|.++.  .+..+++|++|+|++|.+.+. +|..++.+++|++|+|++|.++|.+|..++++++|++|+|++|
T Consensus       427 ~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        427 NQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             CCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            9888888776  778888888888888888775 7777888888888888888888888877777777777777777

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=6e-12  Score=129.69  Aligned_cols=250  Identities=24%  Similarity=0.289  Sum_probs=123.1

Q ss_pred             cCCCCCCEEECCCCCCCCC---CCchhccCCCCCCEEEccCC---CCCccCCcc-------ccCCCCCcEEEccCCCCCC
Q 047985           91 FKLVHLEWLDLAFNDFDGS---EIPPEIINLSSLSYLNLSSA---AFSGQIPSE-------ILELSKLAYLDLSHNSYYD  157 (930)
Q Consensus        91 ~~l~~L~~L~Ls~n~~~~~---~ip~~l~~l~~L~~L~Ls~n---~l~~~~p~~-------l~~l~~L~~L~Ls~n~~~~  157 (930)
                      ..+..+++++||+|.|...   .+...+.+.++|+..++|+-   +....+|..       +-.+++|++||||+|.+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            3444455555555554321   12233444555555555542   111223322       3345567777777764322


Q ss_pred             CccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCc
Q 047985          158 PVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDE  237 (930)
Q Consensus       158 ~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  237 (930)
                      ...   ..+...+..++.|++|+|.+|.+.-.--..++.  .|.+|.         .....+.-+.|+++....|++...
T Consensus       107 ~g~---~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  107 KGI---RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             cch---HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence            111   233445566666666666666554322222111  011100         001122334555555555555432


Q ss_pred             ----hhhhhcCCCCCCEEEccCCCCCC----CcchhhcCCCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCC
Q 047985          238 ----LPTFIGTLGSLKELDLLQNNLSG----ELPNSIGNLASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASND  305 (930)
Q Consensus       238 ----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~  305 (930)
                          +...|...+.|+++.+..|.|..    .+...|..+++|+.|||..|-++..    +...+..+++|+.|++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence                22344455566666666665532    1233455666666666666665432    22345556667777777666


Q ss_pred             CCCccCccc-----ccccccceeecccccccCC----CcccccCCCCCCEEEccCCCC
Q 047985          306 FSGELPASF-----GNLRSLRTLDVYECKFSGQ----IPSSLSNLTHLSFLDFSLNNF  354 (930)
Q Consensus       306 l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l  354 (930)
                      +...-...+     ...++|++|.+.+|.++..    +...+...+.|..|+|++|.+
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            654322211     1246677777777766532    222344567777777777777

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.14  E-value=3.4e-12  Score=138.73  Aligned_cols=128  Identities=34%  Similarity=0.512  Sum_probs=102.8

Q ss_pred             ceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEcc
Q 047985          464 VNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLS  543 (930)
Q Consensus       464 ~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  543 (930)
                      ...+++.|++. ++|..++.+ ..|+.+.+.+|.+. .+|.++.++.. |+++||+.|+++ .+|..++.++ |+.|.++
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f-~~Le~liLy~n~~r-~ip~~i~~L~~-lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAF-VSLESLILYHNCIR-TIPEAICNLEA-LTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             hhhhccccccc-cCchHHHHH-HHHHHHHHHhccce-ecchhhhhhhH-HHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            44455556665 788888877 77999999999987 78888888886 999999999998 7787777765 8899999


Q ss_pred             CccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccC
Q 047985          544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLI  599 (930)
Q Consensus       544 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  599 (930)
                      +|+++ .+|..++....|..||.+.|.+... |..++++.+|+.|+++.|++....
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~lp  205 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLP  205 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCC
Confidence            99988 6777888888899999999988765 667777788888888877776553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=3.7e-12  Score=138.45  Aligned_cols=171  Identities=28%  Similarity=0.406  Sum_probs=96.8

Q ss_pred             cceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCC
Q 047985          395 FRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLT  474 (930)
Q Consensus       395 L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~  474 (930)
                      -...+++.|.+.++|.....+..|+.+.|..|.+. .+|..+.  .+..|.+|+|+.|+++                   
T Consensus        77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~--~L~~lt~l~ls~NqlS-------------------  134 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAIC--NLEALTFLDLSSNQLS-------------------  134 (722)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhh--hhhHHHHhhhccchhh-------------------
Confidence            34556666666677766666667777777777765 4555554  5666666777666665                   


Q ss_pred             CCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCcc
Q 047985          475 GEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRS  554 (930)
Q Consensus       475 g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  554 (930)
                       .+|..+|.+ + |+.|-+++|+++ .+|..++.... |..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..
T Consensus       135 -~lp~~lC~l-p-Lkvli~sNNkl~-~lp~~ig~~~t-l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~E  207 (722)
T KOG0532|consen  135 -HLPDGLCDL-P-LKVLIVSNNKLT-SLPEEIGLLPT-LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEE  207 (722)
T ss_pred             -cCChhhhcC-c-ceeEEEecCccc-cCCcccccchh-HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHH
Confidence             445555554 2 555555555554 44545553332 555555555555 45555555555555555555555 23444


Q ss_pred             ccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCccc
Q 047985          555 LANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH  596 (930)
Q Consensus       555 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  596 (930)
                      +. .-.|..||+|.|+++.+ |..|..+..|++|-|.+|++.
T Consensus       208 l~-~LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  208 LC-SLPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             Hh-CCceeeeecccCceeec-chhhhhhhhheeeeeccCCCC
Confidence            44 33455555555555543 555555555555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=3.2e-10  Score=128.91  Aligned_cols=200  Identities=38%  Similarity=0.511  Sum_probs=142.4

Q ss_pred             EEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCC-CCcEEEccCCCCCCCccccCCchhhhhhCCCCC
Q 047985           98 WLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELS-KLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL  176 (930)
Q Consensus        98 ~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L  176 (930)
                      .++++.+.+...  ...+..++.++.|++.+|.++ .+|...+.+. +|+.|++++|.+        ..++..+..+++|
T Consensus        97 ~l~~~~~~~~~~--~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i--------~~l~~~~~~l~~L  165 (394)
T COG4886          97 SLDLNLNRLRSN--ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI--------ESLPSPLRNLPNL  165 (394)
T ss_pred             eeeccccccccC--chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccch--------hhhhhhhhccccc
Confidence            567777766322  234556677888888888877 6666666664 788888888754        3444567778888


Q ss_pred             CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCC
Q 047985          177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQN  256 (930)
Q Consensus       177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  256 (930)
                      +.|++++|+++.. |...+..+.|+.|++++|++. .+|........|++|.+++|.+. ..+..+.++.++..+.+.+|
T Consensus       166 ~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n  242 (394)
T COG4886         166 KNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN  242 (394)
T ss_pred             cccccCCchhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCc
Confidence            8888888877654 333336678888888888887 45655556666888888888533 34456777788888888888


Q ss_pred             CCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCccc
Q 047985          257 NLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASF  314 (930)
Q Consensus       257 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  314 (930)
                      ++. .++..++.++++++|++++|.++...+  ++.+.+|+.|++++|.+....|...
T Consensus       243 ~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         243 KLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             eee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            776 346677888888899998888875433  8888888999998888886655443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.03  E-value=5.9e-11  Score=122.46  Aligned_cols=254  Identities=22%  Similarity=0.287  Sum_probs=160.4

Q ss_pred             hhccCCCCCCEEEccCCCCCcc----CCccccCCCCCcEEEccCCCCCCCccccCCchh-------hhhhCCCCCCEEEc
Q 047985          113 PEIINLSSLSYLNLSSAAFSGQ----IPSEILELSKLAYLDLSHNSYYDPVELRKPSLG-------NLADKLTNLKELVL  181 (930)
Q Consensus       113 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~-------~~l~~l~~L~~L~L  181 (930)
                      +.+.....+++++||+|.|.-.    +...+.+.++|+..++|+-.. ....   ..+|       +.+..+++|++|+|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ft-GR~~---~Ei~e~L~~l~~aL~~~~~L~~ldL   99 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFT-GRLK---DEIPEALKMLSKALLGCPKLQKLDL   99 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhc-CCcH---HHHHHHHHHHHHHHhcCCceeEeec
Confidence            3456677888888888888632    334456667777777776411 1110   1122       23344556666666


Q ss_pred             CCccCCCCCchhc----cCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCC
Q 047985          182 GDVTISSPIPHNL----TYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN  257 (930)
Q Consensus       182 ~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  257 (930)
                      |+|.+....+..|    ..+..|++|.|.+|.+.-.--..++.  .|..|.         .....+.-+.|+++..++|+
T Consensus       100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen  100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccc
Confidence            6665554443332    33445555555555443111111110  111111         11223445789999999999


Q ss_pred             CCCC----cchhhcCCCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCCCCCc----cCcccccccccceeec
Q 047985          258 LSGE----LPNSIGNLASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASNDFSGE----LPASFGNLRSLRTLDV  325 (930)
Q Consensus       258 l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L  325 (930)
                      +...    +...|...+.|+.+.++.|.+...    +...|..+++|+.|||..|.++..    +...+..+++|+.|++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            8642    345677889999999999987532    224578899999999999999753    3445677889999999


Q ss_pred             ccccccCCCcccc-----cCCCCCCEEEccCCCCCCCCc--hhHHhhccccccEEEccCCccc
Q 047985          326 YECKFSGQIPSSL-----SNLTHLSFLDFSLNNFSGKMD--LDIFLVNHKLLYHLFLSTNRLS  381 (930)
Q Consensus       326 ~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~~~L~~L~Ls~n~l~  381 (930)
                      ++|.+.......+     ...++|+.|.+.+|.++..-.  ........+.|..|+|++|++.
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            9999875443333     347899999999999874322  2223356899999999999874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=8.2e-11  Score=124.55  Aligned_cols=116  Identities=28%  Similarity=0.278  Sum_probs=67.2

Q ss_pred             ccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCC--CcchhhhcC
Q 047985          338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLT--EIPKFLKNQ  415 (930)
Q Consensus       338 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~--~ip~~l~~~  415 (930)
                      ...|++++.|||+.|-+....+...+...+++|+.|+|+.|++..-...........++.|.+++|.++  .+...+..+
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            344555556666655555544444455566666666666665544333333335677888888888888  566666778


Q ss_pred             CCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCc
Q 047985          416 HHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT  455 (930)
Q Consensus       416 ~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~  455 (930)
                      |+|+.|+|..|..  ..........+..|+.|+|++|++-
T Consensus       222 Psl~~L~L~~N~~--~~~~~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  222 PSLEVLYLEANEI--ILIKATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             CcHHHhhhhcccc--cceecchhhhhhHHhhccccCCccc
Confidence            8888888888852  1111111112344555555555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.99  E-value=8.5e-10  Score=125.45  Aligned_cols=201  Identities=40%  Similarity=0.543  Sum_probs=162.5

Q ss_pred             CEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCC-CCCEEEcCCccCCCCCchhccCCCCC
Q 047985          122 SYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLT-NLKELVLGDVTISSPIPHNLTYLSSL  200 (930)
Q Consensus       122 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L  200 (930)
                      ..|+++.+.+... +..+..++.++.|++..|.+        ..++.....++ +|+.|++++|.+... |..+..+++|
T Consensus        96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i--------~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L  165 (394)
T COG4886          96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNI--------TDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNL  165 (394)
T ss_pred             ceeeccccccccC-chhhhcccceeEEecCCccc--------ccCccccccchhhcccccccccchhhh-hhhhhccccc
Confidence            3688888887533 33466778999999999964        45666666774 999999999998763 4668899999


Q ss_pred             CEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCC
Q 047985          201 TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN  280 (930)
Q Consensus       201 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  280 (930)
                      +.|++++|++. .+|...+..+.|+.|++++|++.. +|........|++|.+++|.+. ..+..+.++.++..+.+.+|
T Consensus       166 ~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n  242 (394)
T COG4886         166 KNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN  242 (394)
T ss_pred             cccccCCchhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCc
Confidence            99999999998 456656688999999999999984 4555556677999999999654 56677889999999999999


Q ss_pred             CCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccc
Q 047985          281 RFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSL  338 (930)
Q Consensus       281 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  338 (930)
                      ++.. ++..++.+++++.|++++|.++...+  ++.+.+++.|++++|.+....|...
T Consensus       243 ~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         243 KLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             eeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            8764 36788999999999999999985433  8889999999999999987766543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.4e-10  Score=122.80  Aligned_cols=211  Identities=25%  Similarity=0.266  Sum_probs=96.4

Q ss_pred             cCCCCCCEEEccCCCCCccCC--ccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchh
Q 047985          116 INLSSLSYLNLSSAAFSGQIP--SEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHN  193 (930)
Q Consensus       116 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~  193 (930)
                      .++++|+...|.++... ..+  .....|++++.||||+|-+..     ...+......+++|+.|+++.|.+.......
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~n-----w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~  191 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHN-----WFPVLKIAEQLPSLENLNLSSNRLSNFISSN  191 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHh-----HHHHHHHHHhcccchhcccccccccCCcccc
Confidence            45566666666666554 222  234556666666666663211     1123344455666666666666544322211


Q ss_pred             c-cCCCCCCEEEccCCCCCCC-CcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCC
Q 047985          194 L-TYLSSLTTLSLSGCDLRGR-IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLAS  271 (930)
Q Consensus       194 l-~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  271 (930)
                      . ..+++|+.|.|+.|.++.. +-..+..+++|+.|+|..                        |............+..
T Consensus       192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~------------------------N~~~~~~~~~~~i~~~  247 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEA------------------------NEIILIKATSTKILQT  247 (505)
T ss_pred             chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhc------------------------ccccceecchhhhhhH
Confidence            1 1234555555555554411 111123344444444444                        4322121222233344


Q ss_pred             CCEEEccCCCCCCCC-CCCCCCCcCCcEEEccCCCCCCc-cCcc-----cccccccceeecccccccCC-CcccccCCCC
Q 047985          272 LEQVDLSLNRFLGKV-PSSLGNLTQLHWLSLASNDFSGE-LPAS-----FGNLRSLRTLDVYECKFSGQ-IPSSLSNLTH  343 (930)
Q Consensus       272 L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~  343 (930)
                      |+.|||++|++.... -...+.++.|..|+++.+.+... .|+.     ...+++|++|++..|++... .-..+..+++
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n  327 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN  327 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence            555555555443211 02234445555555555544431 1221     23456666666666665321 0112344556


Q ss_pred             CCEEEccCCCCCC
Q 047985          344 LSFLDFSLNNFSG  356 (930)
Q Consensus       344 L~~L~Ls~n~l~~  356 (930)
                      |+.|.+..|.++.
T Consensus       328 lk~l~~~~n~ln~  340 (505)
T KOG3207|consen  328 LKHLRITLNYLNK  340 (505)
T ss_pred             hhhhhcccccccc
Confidence            6666666666653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.80  E-value=9.6e-10  Score=110.60  Aligned_cols=134  Identities=19%  Similarity=0.159  Sum_probs=74.5

Q ss_pred             CCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEE
Q 047985          269 LASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLD  348 (930)
Q Consensus       269 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  348 (930)
                      ...|+++||++|.++ .+.++..-.+.++.|++|+|.+...  ..+..+++|+.|||++|.++. +..+-..+.++++|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence            345566666666554 3444455556666666666665522  225555666666666665552 222333455666666


Q ss_pred             ccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcch
Q 047985          349 FSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK  410 (930)
Q Consensus       349 Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~  410 (930)
                      |+.|.+...-    .+.++-+|..||+++|+|............+.|+.+.+.+|.+..+++
T Consensus       359 La~N~iE~LS----GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  359 LAQNKIETLS----GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhhHhhhh----hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            6666543211    114455566666666666655555555556667777777777765554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.79  E-value=6.3e-09  Score=76.14  Aligned_cols=43  Identities=44%  Similarity=0.838  Sum_probs=29.8

Q ss_pred             cHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccceEec
Q 047985            7 HGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCN   64 (930)
Q Consensus         7 ~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~   64 (930)
                      .++|++||++||+++..++.             ..+.+|+...  ..+||+|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~-------------~~l~~W~~~~--~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPS-------------GVLSSWNPSS--DSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC--------------CCCTT--TT----S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccC-------------cccccCCCcC--CCCCeeeccEEeC
Confidence            36899999999999996543             2799998731  2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.79  E-value=1.2e-09  Score=109.96  Aligned_cols=133  Identities=26%  Similarity=0.283  Sum_probs=78.8

Q ss_pred             CCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEE
Q 047985          221 ITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLS  300 (930)
Q Consensus       221 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  300 (930)
                      -+.|+.+|||+|.|+ .+.++..-.+.++.|++++|.+...  ..++.+++|+.|||++|.++ .+..+=.++.+.+.|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            345566666666554 3334445556666666666666522  23566666666666666655 2334444556666777


Q ss_pred             ccCCCCCCccCcccccccccceeecccccccCC-CcccccCCCCCCEEEccCCCCCCCCc
Q 047985          301 LASNDFSGELPASFGNLRSLRTLDVYECKFSGQ-IPSSLSNLTHLSFLDFSLNNFSGKMD  359 (930)
Q Consensus       301 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~  359 (930)
                      |+.|.+..  -+.++.+-+|..||+++|++... --..+++++.|+.+.|.+|++.+.+.
T Consensus       359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            77766642  23455566677777777766521 12356777777777777777776554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.78  E-value=4.1e-09  Score=102.69  Aligned_cols=104  Identities=32%  Similarity=0.418  Sum_probs=23.8

Q ss_pred             CCCCEEEccCCCCCCCCccccc-CCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhh-cCCCCCCEE
Q 047985          198 SSLTTLSLSGCDLRGRIPSSLG-NITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLEQV  275 (930)
Q Consensus       198 ~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L  275 (930)
                      .++++|+|.+|.|+..  +.++ .+.+|+.|++++|.++..  +.+..+++|++|++++|.++. +++.+ ..+++|++|
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence            4455555555555421  2333 345555666666655533  234445556666666665553 22222 245555555


Q ss_pred             EccCCCCCCCCC-CCCCCCcCCcEEEccCCCC
Q 047985          276 DLSLNRFLGKVP-SSLGNLTQLHWLSLASNDF  306 (930)
Q Consensus       276 ~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l  306 (930)
                      ++++|++...-. ..+..+++|+.|+|.+|.+
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            555555543211 2233344444444444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.76  E-value=6.9e-09  Score=101.12  Aligned_cols=103  Identities=28%  Similarity=0.262  Sum_probs=28.4

Q ss_pred             CCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCccc-ccccccceeecccccccCCC-cccccCCCCCCE
Q 047985          269 LASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASF-GNLRSLRTLDVYECKFSGQI-PSSLSNLTHLSF  346 (930)
Q Consensus       269 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~  346 (930)
                      +.+|+.|+|++|.++..  +.+..++.|++|++++|+++.. ...+ ..+++|++|++++|++...- -..+..+++|+.
T Consensus        41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            34444444444444422  1244444455555555544422 1112 23445555555555443211 123444555555


Q ss_pred             EEccCCCCCCCCch-hHHhhccccccEEE
Q 047985          347 LDFSLNNFSGKMDL-DIFLVNHKLLYHLF  374 (930)
Q Consensus       347 L~Ls~n~l~~~~~~-~~~~~~~~~L~~L~  374 (930)
                      |++.+|+++..... ......+|+|+.||
T Consensus       118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen  118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             eeccCCcccchhhHHHHHHHHcChhheeC
Confidence            55555555433221 12224455555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.74  E-value=1.2e-08  Score=123.86  Aligned_cols=248  Identities=24%  Similarity=0.217  Sum_probs=116.8

Q ss_pred             CCCEEECCCCC--CCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhC
Q 047985           95 HLEWLDLAFND--FDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADK  172 (930)
Q Consensus        95 ~L~~L~Ls~n~--~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~  172 (930)
                      .|++|-+..|.  +... .+..|..++.|++|||++|.=-+.+|..++.|-+||||++++..+        ..+|..+.+
T Consensus       546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--------~~LP~~l~~  616 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--------SHLPSGLGN  616 (889)
T ss_pred             ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--------cccchHHHH
Confidence            45555555554  2211 223355566666666666554456666666666666666666532        355666666


Q ss_pred             CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCC--CCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCC-
Q 047985          173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR--GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK-  249 (930)
Q Consensus       173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~-  249 (930)
                      ++.|.+|++..+.....+|.....+++|++|.+......  ...-..+.++.+|+.+.......  .+-..+..+..|. 
T Consensus       617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~  694 (889)
T KOG4658|consen  617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRS  694 (889)
T ss_pred             HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHH
Confidence            666666666655544444555555666666666554321  11222334444444444432221  1111112222222 


Q ss_pred             ---EEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCC------CcCCcEEEccCCCCCCccCccccccccc
Q 047985          250 ---ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN------LTQLHWLSLASNDFSGELPASFGNLRSL  320 (930)
Q Consensus       250 ---~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  320 (930)
                         .+.+..+... ..+..+..+.+|+.|.+.++.+..........      ++++..+...++... ..+.+..-.++|
T Consensus       695 ~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L  772 (889)
T KOG4658|consen  695 LLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHL  772 (889)
T ss_pred             HhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcc
Confidence               2222222222 33445666677777777776654322222111      112222222222111 122233334667


Q ss_pred             ceeecccccccCCCcccccCCCCCCEEEccCCCCC
Q 047985          321 RTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS  355 (930)
Q Consensus       321 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  355 (930)
                      +.|.+..+.....+.+....+..++.+.+..+.+.
T Consensus       773 ~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  773 TSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             cEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            77777766665555444555555554444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.72  E-value=7.9e-09  Score=82.68  Aligned_cols=60  Identities=35%  Similarity=0.602  Sum_probs=38.3

Q ss_pred             ccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcc
Q 047985          705 GLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHF  764 (930)
Q Consensus       705 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L  764 (930)
                      +|+.|++++|+++...+..|.++++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666655555666666666666666666655555666666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=2e-08  Score=80.36  Aligned_cols=60  Identities=40%  Similarity=0.554  Sum_probs=56.3

Q ss_pred             cccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcC
Q 047985          681 ILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRF  740 (930)
Q Consensus       681 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l  740 (930)
                      .|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            589999999999977778999999999999999999988889999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.59  E-value=9.5e-09  Score=117.04  Aligned_cols=221  Identities=27%  Similarity=0.307  Sum_probs=130.0

Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      .+|+.|++.+|.|..... .+..+.. |++|++++|.|+...  .+..++.|+.|++++|.|+..  ..+..+..|+.++
T Consensus        95 ~~l~~l~l~~n~i~~i~~-~l~~~~~-L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIEN-LLSSLVN-LQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD  168 (414)
T ss_pred             cceeeeeccccchhhccc-chhhhhc-chheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence            455666666666553322 1334443 666666666665432  234445577777777777643  2445577777777


Q ss_pred             ccCccccccCc-ccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccc
Q 047985          566 LGDNQIRDIFP-SWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASEL  644 (930)
Q Consensus       566 Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~  644 (930)
                      +++|++..+-+ . ...+.+++.+.+.+|.+...-..    ..+..+..+++..|.++-.-+..      .         
T Consensus       169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~~~~l~~n~i~~~~~l~------~---------  228 (414)
T KOG0531|consen  169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL----DLLKKLVLLSLLDNKISKLEGLN------E---------  228 (414)
T ss_pred             CCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----HHHHHHHHhhcccccceeccCcc------c---------
Confidence            77777777654 2 46677777788888777654221    22344555567777665211100      0         


Q ss_pred             ccccccccCCCCCccceeeeEeeecccccccccccc--cccEEEcccccccccCchhcccccccceeeccCccccccCcc
Q 047985          645 RYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPD--ILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPS  722 (930)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  722 (930)
                                                        ..  .++.+++++|++. .++..+..+..+..|+++.|++...  .
T Consensus       229 ----------------------------------~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~  271 (414)
T KOG0531|consen  229 ----------------------------------LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--E  271 (414)
T ss_pred             ----------------------------------chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--c
Confidence                                              00  2567777777776 4445566677778888888877643  2


Q ss_pred             cccccCCCCeeeCCCCcCccc---CCcc-ccCCCCCCeeecCCCcccccCC
Q 047985          723 CLGNLTDLESLDLSNNRFSGQ---IPQQ-LVELTFLEFFNVSDNHFTGPIP  769 (930)
Q Consensus       723 ~l~~L~~L~~LdLs~N~lsg~---ip~~-l~~L~~L~~L~ls~N~L~g~iP  769 (930)
                      .+.....+..+.++.|.+...   .... ....+.+..+.+.+|+.....+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  272 GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            245556677777777776522   1111 4556677777777777766554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.58  E-value=6.2e-08  Score=117.79  Aligned_cols=104  Identities=36%  Similarity=0.450  Sum_probs=47.7

Q ss_pred             CCcEEEccCCC--CCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEE
Q 047985          223 RLIHLDLSFNK--LSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLS  300 (930)
Q Consensus       223 ~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  300 (930)
                      +|++|-+..|.  +.....++|..++.|++|||++|.--+.+|..++.+-+|++|++++..+. .+|..+.++..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            44444444443  23233333444555555555544443444555555555555555554443 4444455555555555


Q ss_pred             ccCCCCCCccCcccccccccceeeccc
Q 047985          301 LASNDFSGELPASFGNLRSLRTLDVYE  327 (930)
Q Consensus       301 Ls~N~l~~~~p~~l~~l~~L~~L~L~~  327 (930)
                      +..+.-...+|.....+++|++|.+..
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cccccccccccchhhhcccccEEEeec
Confidence            544443333333333344444444433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.58  E-value=6e-09  Score=118.69  Aligned_cols=61  Identities=31%  Similarity=0.317  Sum_probs=35.8

Q ss_pred             CCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCC
Q 047985           92 KLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSY  155 (930)
Q Consensus        92 ~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  155 (930)
                      .+..++.+++..|.+..  +-..++.+++|++|++.+|.+.. +...+..+++|++|++++|.+
T Consensus        70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I  130 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKI  130 (414)
T ss_pred             HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccc
Confidence            45566666666666653  12335666677777777776662 332255566666666666643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=8.2e-09  Score=104.15  Aligned_cols=182  Identities=24%  Similarity=0.241  Sum_probs=103.4

Q ss_pred             CCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCC
Q 047985           95 HLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLT  174 (930)
Q Consensus        95 ~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~  174 (930)
                      .|++||||...++...+..-+..+.+|+.|.|.++.+.+.+...+++-.+|+.|+++.+.   .+  ....+...+.+++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s---G~--t~n~~~ll~~scs  260 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS---GF--TENALQLLLSSCS  260 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc---cc--chhHHHHHHHhhh
Confidence            478888888777655455557778888888888888888877788888888888888773   11  1233445567777


Q ss_pred             CCCEEEcCCccCCCCCch-hccCC-CCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEE
Q 047985          175 NLKELVLGDVTISSPIPH-NLTYL-SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELD  252 (930)
Q Consensus       175 ~L~~L~L~~n~l~~~~~~-~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  252 (930)
                      .|.+|+++.|.+....-. .+.+. ++|+.|+|+++.-.                     -....+..-...+++|.+||
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~~LD  319 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLVHLD  319 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCceeeec
Confidence            777777777765543321 11111 45566666655311                     00011112223445555555


Q ss_pred             ccCCC-CCCCcchhhcCCCCCCEEEccCCCCCCCCCCC---CCCCcCCcEEEccCC
Q 047985          253 LLQNN-LSGELPNSIGNLASLEQVDLSLNRFLGKVPSS---LGNLTQLHWLSLASN  304 (930)
Q Consensus       253 L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~N  304 (930)
                      |++|. ++...-..|.+++.|++|.++.|.  +.+|..   +...+.|.+|++.++
T Consensus       320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence            55442 222223344555566666665553  234432   344566666666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.30  E-value=1.3e-08  Score=113.98  Aligned_cols=127  Identities=27%  Similarity=0.296  Sum_probs=67.8

Q ss_pred             CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecc
Q 047985          247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY  326 (930)
Q Consensus       247 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  326 (930)
                      .|...+.+.|.+. .+..++.-++.|+.|+|++|+++...  .+..+++|++|||+.|.+....--....+. |+.|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            4555555666555 44455555566666666666665432  455566666666666666522111222233 6666666


Q ss_pred             cccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcc
Q 047985          327 ECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRL  380 (930)
Q Consensus       327 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l  380 (930)
                      +|.++..  ..+.++.+|+.||+++|-+.+--....+ ..+..|+.|+|.+|++
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pL-wsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPL-WSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHH-HHHHHHHHHhhcCCcc
Confidence            6655532  2345566666666666655543322222 4455666666666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=4.8e-07  Score=90.46  Aligned_cols=38  Identities=18%  Similarity=0.008  Sum_probs=17.6

Q ss_pred             cccceeecccccccCCCccc-------ccCCCCCCEEEccCCCCC
Q 047985          318 RSLRTLDVYECKFSGQIPSS-------LSNLTHLSFLDFSLNNFS  355 (930)
Q Consensus       318 ~~L~~L~L~~n~l~~~~p~~-------l~~l~~L~~L~Ls~n~l~  355 (930)
                      ++|..|-..+|...+.+...       -.+++-|..|.+.+|.+.
T Consensus       272 p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         272 PNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             CCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            45555555555444322111       123455555555556554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=1e-06  Score=89.33  Aligned_cols=191  Identities=17%  Similarity=0.146  Sum_probs=89.9

Q ss_pred             CCCCcEEEccCCCCCCc--hhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCC-CCCCCCCCcCCc
Q 047985          221 ITRLIHLDLSFNKLSDE--LPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGK-VPSSLGNLTQLH  297 (930)
Q Consensus       221 l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~  297 (930)
                      .+.++.+||.+|.|+.-  +-..+.+++.|++|+++.|.+...|-..-....+|+.|-|.+..+.-. ....+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            45556666666665532  333345556666666666655533322112344555555555444321 112334445555


Q ss_pred             EEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccC
Q 047985          298 WLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLST  377 (930)
Q Consensus       298 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~  377 (930)
                      .|.+|.|.+.              .+.+..+.....       -+.+.+|++-.|...-...........+++..+.+-.
T Consensus       150 elHmS~N~~r--------------q~n~Dd~c~e~~-------s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e  208 (418)
T KOG2982|consen  150 ELHMSDNSLR--------------QLNLDDNCIEDW-------STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE  208 (418)
T ss_pred             hhhhccchhh--------------hhcccccccccc-------chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence            5555544321              111111111110       1123333332222110000000112345555566666


Q ss_pred             CcccccccccCCCCccccceeeeccCCCCCc--chhhhcCCCcCEEeCCCCCCcCCC
Q 047985          378 NRLSLLTKATSNTTSHRFRAVSLCSCDLTEI--PKFLKNQHHLELLDLASNKINGKV  432 (930)
Q Consensus       378 n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~i--p~~l~~~~~L~~L~Ls~N~l~~~~  432 (930)
                      +++............+.+..|.+..+++...  .+.+..++.|..|.++++.+.+.+
T Consensus       209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            6555544444444555666777777777733  346777888888888888776443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.18  E-value=9.2e-08  Score=107.36  Aligned_cols=126  Identities=29%  Similarity=0.301  Sum_probs=75.0

Q ss_pred             CcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEE
Q 047985          462 NTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVID  541 (930)
Q Consensus       462 ~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  541 (930)
                      .|...+.+.|.+. .+..++.-+ +.|+.|+|++|+++..-  .+..++. |++|||++|.+. .+|..-.....|+.|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll-~ale~LnLshNk~~~v~--~Lr~l~~-LkhLDlsyN~L~-~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLL-PALESLNLSHNKFTKVD--NLRRLPK-LKHLDLSYNCLR-HVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHH-HHhhhhccchhhhhhhH--HHHhccc-ccccccccchhc-cccccchhhhhheeee
Confidence            4444455555554 333333333 66777777777776432  5556665 777777777776 4444333334477777


Q ss_pred             ccCccccccCCccccCCCCCcEecccCccccccC-cccccCCCCCcEEEccCCcc
Q 047985          542 LSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF-PSWLGTLPDLNVLILKSNKF  595 (930)
Q Consensus       542 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l  595 (930)
                      +++|.++..  ..+.++.+|+.||+++|-|.+.- -..++.+..|+.|+|.+|++
T Consensus       239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            777777643  34567777777777777766541 12234566677777777765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.18  E-value=6.6e-07  Score=89.50  Aligned_cols=189  Identities=20%  Similarity=0.227  Sum_probs=89.5

Q ss_pred             cEEEEEcCCCCCcccccC--cccccCCCCCCEEECCCCCCCC--CCCc-------hhccCCCCCCEEEccCCCCCccCCc
Q 047985           69 HVIKLDLSSSCLQGSINS--SSSLFKLVHLEWLDLAFNDFDG--SEIP-------PEIINLSSLSYLNLSSAAFSGQIPS  137 (930)
Q Consensus        69 ~v~~L~L~~~~l~g~~~~--~~~l~~l~~L~~L~Ls~n~~~~--~~ip-------~~l~~l~~L~~L~Ls~n~l~~~~p~  137 (930)
                      .++.+||++|.+......  ...+.+-++|++.+++.-....  ..++       +.+-+|++|+..+||.|.|....|.
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            466777777766432110  0134555666666666432110  1122       2345566777777777766655554


Q ss_pred             cc----cCCCCCcEEEccCCCCCCCccccCCchhhh---------hhCCCCCCEEEcCCccCCCCCch----hccCCCCC
Q 047985          138 EI----LELSKLAYLDLSHNSYYDPVELRKPSLGNL---------ADKLTNLKELVLGDVTISSPIPH----NLTYLSSL  200 (930)
Q Consensus       138 ~l----~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~---------l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L  200 (930)
                      .+    ++-+.|++|.+++|-+..   +..+.+...         ..+-+.|++..+..|++......    .+..-..|
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGlGp---~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGLGP---IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCCCc---cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            43    344566666666663211   111222211         23345566666666654332111    11122456


Q ss_pred             CEEEccCCCCCCC-----CcccccCCCCCcEEEccCCCCCCc----hhhhhcCCCCCCEEEccCCCCCC
Q 047985          201 TTLSLSGCDLRGR-----IPSSLGNITRLIHLDLSFNKLSDE----LPTFIGTLGSLKELDLLQNNLSG  260 (930)
Q Consensus       201 ~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~  260 (930)
                      +++.+..|.|.-.     +-..+..+.+|+.||+.+|.++..    +..++...+.|++|.+.+|-++.
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            6666666654411     011123445566666666655432    22233344455555555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=5.8e-08  Score=98.13  Aligned_cols=69  Identities=28%  Similarity=0.399  Sum_probs=32.0

Q ss_pred             hhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCC-CCCC-CcccccCCCCCcEEEccCCCCC
Q 047985          167 GNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCD-LRGR-IPSSLGNITRLIHLDLSFNKLS  235 (930)
Q Consensus       167 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l~  235 (930)
                      ...++.+.+|+.|.+.++.+.+.+...+++-..|+.|+|+.+. ++.. ..--+.+++.|..|+++++.+.
T Consensus       203 ~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~  273 (419)
T KOG2120|consen  203 HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF  273 (419)
T ss_pred             HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence            3444555555555555555555555555555555555555442 1110 0111234455555555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.17  E-value=1.5e-07  Score=84.60  Aligned_cols=86  Identities=27%  Similarity=0.444  Sum_probs=61.1

Q ss_pred             ccEEEcccccccccCchhcc-cccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecC
Q 047985          682 LTAVILSSNRFDGEIPTSIS-NLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVS  760 (930)
Q Consensus       682 L~~L~Ls~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls  760 (930)
                      |+.++|++|.|. ..|+.|. .++.++.|||++|.++ .+|..+..++.|+.|+++.|.+. ..|+-+..|.+|.+||..
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            666777777776 4444443 4457777888888887 67777888888888888888887 345555667777788777


Q ss_pred             CCcccccCCCC
Q 047985          761 DNHFTGPIPQG  771 (930)
Q Consensus       761 ~N~L~g~iP~~  771 (930)
                      .|.+. +||..
T Consensus       132 ~na~~-eid~d  141 (177)
T KOG4579|consen  132 ENARA-EIDVD  141 (177)
T ss_pred             CCccc-cCcHH
Confidence            77765 66654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.93  E-value=6.7e-07  Score=94.96  Aligned_cols=297  Identities=20%  Similarity=0.144  Sum_probs=134.9

Q ss_pred             CcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCC-CCCCCchhccCCCCCCEEEccCC-CCCccCCccc-cCCCC
Q 047985           68 GHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDF-DGSEIPPEIINLSSLSYLNLSSA-AFSGQIPSEI-LELSK  144 (930)
Q Consensus        68 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~-~~~~ip~~l~~l~~L~~L~Ls~n-~l~~~~p~~l-~~l~~  144 (930)
                      |++++|.+++..-.|.-+-......++++++|++.++.. +....-..-..+++|++|+|..| .++...-..+ ..+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            455666666654433322222334566666666666542 22111111234666777777663 3443322212 34667


Q ss_pred             CcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhc----cCCCCCCEEEccCCC-CCCCC-cccc
Q 047985          145 LAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNL----TYLSSLTTLSLSGCD-LRGRI-PSSL  218 (930)
Q Consensus       145 L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~-l~~~~-p~~l  218 (930)
                      |++|+++.+.-     +....+.....++..++.+.+++|.-.+  .+.+    +.+..+.++++..|. ++... -..-
T Consensus       218 L~~lNlSwc~q-----i~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  218 LKYLNLSWCPQ-----ISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA  290 (483)
T ss_pred             HHHhhhccCch-----hhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence            77777776631     1223344445555555555555432111  1111    233445555555543 22111 0111


Q ss_pred             cCCCCCcEEEccCCCC-CCchhhhh-cCCCCCCEEEccCCCC-CCCcchhh-cCCCCCCEEEccCCCCCC--CCCCCCCC
Q 047985          219 GNITRLIHLDLSFNKL-SDELPTFI-GTLGSLKELDLLQNNL-SGELPNSI-GNLASLEQVDLSLNRFLG--KVPSSLGN  292 (930)
Q Consensus       219 ~~l~~L~~L~Ls~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~l~~--~~p~~l~~  292 (930)
                      ..+..|+.|+.+++.. +...-.++ .+..+|++|.++.++- +..--..+ .+++.|+.+++..+....  .+...-.+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            3455666776666533 22222222 3456677777766652 21111112 245666666666654321  11122234


Q ss_pred             CcCCcEEEccCCCCCCcc-----Ccccccccccceeeccccccc-CCCcccccCCCCCCEEEccCCCCCCCCchhHHhhc
Q 047985          293 LTQLHWLSLASNDFSGEL-----PASFGNLRSLRTLDVYECKFS-GQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVN  366 (930)
Q Consensus       293 l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  366 (930)
                      ++.|+.|.++++......     ...-..+..|+.+.|+++... ...-+.+..+++|+.+++..++-...-+...+..+
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~  450 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH  450 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence            566666666665432111     111123455666666666443 22223344555666666655544333333334344


Q ss_pred             ccccc
Q 047985          367 HKLLY  371 (930)
Q Consensus       367 ~~~L~  371 (930)
                      +++++
T Consensus       451 lp~i~  455 (483)
T KOG4341|consen  451 LPNIK  455 (483)
T ss_pred             Cccce
Confidence            44443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.91  E-value=2.6e-05  Score=85.47  Aligned_cols=161  Identities=19%  Similarity=0.250  Sum_probs=84.3

Q ss_pred             CCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCC-cccccCCCCCccCCCCCc
Q 047985          533 KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSN-KFHGLIREPKTDCGFPKL  611 (930)
Q Consensus       533 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L  611 (930)
                      .+..++.|++++|.++. +|. +  ..+|+.|+++++.--..+|..+  .++|+.|++++| .+. .+|        ++|
T Consensus        50 ~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP--------~sL  114 (426)
T PRK15386         50 EARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP--------ESV  114 (426)
T ss_pred             HhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc--------ccc
Confidence            34667778888777663 341 1  2357777777643334445433  246677777766 332 121        345


Q ss_pred             eEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEccccc
Q 047985          612 RIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNR  691 (930)
Q Consensus       612 ~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~  691 (930)
                      +.|+++.|....                                                   +..+|+.|+.|.+.+++
T Consensus       115 e~L~L~~n~~~~---------------------------------------------------L~~LPssLk~L~I~~~n  143 (426)
T PRK15386        115 RSLEIKGSATDS---------------------------------------------------IKNVPNGLTSLSINSYN  143 (426)
T ss_pred             ceEEeCCCCCcc---------------------------------------------------cccCcchHhheeccccc
Confidence            566665544320                                                   11223445555554322


Q ss_pred             cc--ccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCc-----C-cccCCccccCCCCCCeeecCCCc
Q 047985          692 FD--GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNR-----F-SGQIPQQLVELTFLEFFNVSDNH  763 (930)
Q Consensus       692 l~--g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~-----l-sg~ip~~l~~L~~L~~L~ls~N~  763 (930)
                      ..  ..+|..+-  ++|+.|++++|... ..|..+.  .+|++|+++.|.     + .+.+|+.+ .+.....+.++.+.
T Consensus       144 ~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~  217 (426)
T PRK15386        144 PENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDV  217 (426)
T ss_pred             cccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHH
Confidence            10  01111111  56777888777765 3444443  478888887763     1 23566666 55555555566655


Q ss_pred             cc
Q 047985          764 FT  765 (930)
Q Consensus       764 L~  765 (930)
                      |+
T Consensus       218 f~  219 (426)
T PRK15386        218 FK  219 (426)
T ss_pred             hh
Confidence            54

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.84  E-value=1.9e-06  Score=77.63  Aligned_cols=88  Identities=19%  Similarity=0.308  Sum_probs=46.1

Q ss_pred             cccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeee
Q 047985          679 PDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFN  758 (930)
Q Consensus       679 ~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~  758 (930)
                      ++.++.|+|++|.|+ .+|.++..+++|+.||++.|.+. ..|..+..|.+|-.||.-.|.+- +||..+---+.....+
T Consensus        76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~  152 (177)
T KOG4579|consen   76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIK  152 (177)
T ss_pred             cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHH
Confidence            344556666666665 55555666666666666666665 44555555666666666666554 4444422222223333


Q ss_pred             cCCCcccccCC
Q 047985          759 VSDNHFTGPIP  769 (930)
Q Consensus       759 ls~N~L~g~iP  769 (930)
                      +.++++.|.-|
T Consensus       153 lgnepl~~~~~  163 (177)
T KOG4579|consen  153 LGNEPLGDETK  163 (177)
T ss_pred             hcCCcccccCc
Confidence            44444444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.70  E-value=2.5e-05  Score=57.24  Aligned_cols=36  Identities=44%  Similarity=0.702  Sum_probs=17.7

Q ss_pred             ccceeeccCccccccCcccccccCCCCeeeCCCCcCc
Q 047985          705 GLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS  741 (930)
Q Consensus       705 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ls  741 (930)
                      +|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555555 34444555555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.63  E-value=3.6e-05  Score=56.37  Aligned_cols=37  Identities=43%  Similarity=0.693  Sum_probs=32.5

Q ss_pred             CCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCccc
Q 047985          728 TDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT  765 (930)
Q Consensus       728 ~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~  765 (930)
                      ++|++|+|++|+++ .+|..+++|+.|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            57999999999999 57878999999999999999998

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=2e-05  Score=80.24  Aligned_cols=108  Identities=25%  Similarity=0.261  Sum_probs=63.5

Q ss_pred             CCCEEEccCCCCCCCc-chhh-cCCCCCCEEEccCCCCCC--CCCCCCCCCcCCcEEEccCCCCCCccCcccccccccce
Q 047985          247 SLKELDLLQNNLSGEL-PNSI-GNLASLEQVDLSLNRFLG--KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRT  322 (930)
Q Consensus       247 ~L~~L~L~~n~l~~~~-p~~l-~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  322 (930)
                      .++.|.+.++.|...- -..| ..++.++.+||.+|.++.  .+-..+.+++.|++|+|+.|.+...+-..-....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            4455556666554221 1122 245678888888888763  23334567788888888888876443322134567777


Q ss_pred             eecccccccC-CCcccccCCCCCCEEEccCCCC
Q 047985          323 LDVYECKFSG-QIPSSLSNLTHLSFLDFSLNNF  354 (930)
Q Consensus       323 L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l  354 (930)
                      |.|.+..+.- .....+..+|.+++|+++.|++
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            7777765542 1223445566666777666643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.57  E-value=0.00023  Score=78.20  Aligned_cols=9  Identities=33%  Similarity=0.929  Sum_probs=4.7

Q ss_pred             CCCCCCCCC
Q 047985          901 WDPCHPKTA  909 (930)
Q Consensus       901 ~~~~~~~~~  909 (930)
                      |+...||.+
T Consensus       416 w~~y~pk~~  424 (426)
T PRK15386        416 WKDYFPKRS  424 (426)
T ss_pred             hhhcCCCcC
Confidence            555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.48  E-value=6.5e-05  Score=89.54  Aligned_cols=153  Identities=25%  Similarity=0.295  Sum_probs=72.1

Q ss_pred             cEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCC-Cc-------hhc------cCCCCCCEEEccCCC-CCc
Q 047985           69 HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSE-IP-------PEI------INLSSLSYLNLSSAA-FSG  133 (930)
Q Consensus        69 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-ip-------~~l------~~l~~L~~L~Ls~n~-l~~  133 (930)
                      .++++++.+..+......  .+.+.. |+.|.|.+-...... ..       ..+      ..-.+|++||+++.. ++.
T Consensus        61 ~ltki~l~~~~~~~~~~~--~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~  137 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLE--MLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN  137 (699)
T ss_pred             eeEEeeccceecchhHHH--HHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence            577788877665433221  223333 677776654322110 00       000      012456666666643 222


Q ss_pred             cCCcccc-CCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCC
Q 047985          134 QIPSEIL-ELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG  212 (930)
Q Consensus       134 ~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  212 (930)
                      .-|..++ .||.|+.|.+++-.+.      ...+.....++++|..||+++.+++..  ..++++++|++|.+.+-.+..
T Consensus       138 ~W~~kig~~LPsL~sL~i~~~~~~------~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~  209 (699)
T KOG3665|consen  138 GWPKKIGTMLPSLRSLVISGRQFD------NDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFES  209 (699)
T ss_pred             cHHHHHhhhCcccceEEecCceec------chhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCc
Confidence            2333343 3466666666654221      122444455566666666666555543  445555555555555444432


Q ss_pred             -CCcccccCCCCCcEEEccCC
Q 047985          213 -RIPSSLGNITRLIHLDLSFN  232 (930)
Q Consensus       213 -~~p~~l~~l~~L~~L~Ls~n  232 (930)
                       ..-..+.++++|+.||+|..
T Consensus       210 ~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  210 YQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             hhhHHHHhcccCCCeeecccc
Confidence             11223444555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.39  E-value=8.5e-05  Score=88.54  Aligned_cols=134  Identities=22%  Similarity=0.236  Sum_probs=89.5

Q ss_pred             CCCCEEECCCCCCCCCCCchhccC-CCCCCEEEccCCCCCc-cCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhh
Q 047985           94 VHLEWLDLAFNDFDGSEIPPEIIN-LSSLSYLNLSSAAFSG-QIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD  171 (930)
Q Consensus        94 ~~L~~L~Ls~n~~~~~~ip~~l~~-l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~  171 (930)
                      .+|++||+++...-...-|..++. ||+|+.|.+++-.+.. .+-....++++|..||+|+..+        ..+ ..++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI--------~nl-~GIS  192 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI--------SNL-SGIS  192 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc--------cCc-HHHh
Confidence            678999998876443334555664 7999999998876643 2233446789999999998853        222 5688


Q ss_pred             CCCCCCEEEcCCccCCC-CCchhccCCCCCCEEEccCCCCCCCC--cc----cccCCCCCcEEEccCCCCCC
Q 047985          172 KLTNLKELVLGDVTISS-PIPHNLTYLSSLTTLSLSGCDLRGRI--PS----SLGNITRLIHLDLSFNKLSD  236 (930)
Q Consensus       172 ~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--p~----~l~~l~~L~~L~Ls~n~l~~  236 (930)
                      ++++|++|.+.+-.+.. ..-..+.++++|++||+|........  ..    .-..+++|+.||.|+..+..
T Consensus       193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            89999999998877665 33456778999999999987654221  00    11234555555555544443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.32  E-value=1.2e-05  Score=85.74  Aligned_cols=13  Identities=23%  Similarity=0.263  Sum_probs=7.0

Q ss_pred             CCCceEEECCCCc
Q 047985          608 FPKLRIIDLSKNR  620 (930)
Q Consensus       608 l~~L~~LdLs~N~  620 (930)
                      .+.|+.+++-+++
T Consensus       425 c~~Leri~l~~~q  437 (483)
T KOG4341|consen  425 CRNLERIELIDCQ  437 (483)
T ss_pred             Ccccceeeeechh
Confidence            3455556655544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.25  E-value=0.0005  Score=66.67  Aligned_cols=107  Identities=25%  Similarity=0.242  Sum_probs=71.8

Q ss_pred             CCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccC-cccccCCCCCcEEEc
Q 047985          512 WLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF-PSWLGTLPDLNVLIL  590 (930)
Q Consensus       512 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L  590 (930)
                      ....+||++|.+...  ..+..++.|.+|.|++|+|+.+-|.--.-+++|..|.|.+|.|.... -.-+..+|+|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            466677777776522  34556677788888888888776665566677888888888776441 123567888888888


Q ss_pred             cCCcccccCC-CCCccCCCCCceEEECCCCc
Q 047985          591 KSNKFHGLIR-EPKTDCGFPKLRIIDLSKNR  620 (930)
Q Consensus       591 ~~N~l~~~~~-~~~~~~~l~~L~~LdLs~N~  620 (930)
                      -+|+....-- .....+.+|+|++||...=.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            8888764321 11234678899999987543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.20  E-value=0.00057  Score=66.31  Aligned_cols=105  Identities=22%  Similarity=0.200  Sum_probs=61.6

Q ss_pred             CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCc-cCcccccccccceeec
Q 047985          247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE-LPASFGNLRSLRTLDV  325 (930)
Q Consensus       247 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L  325 (930)
                      +...+||++|.+...  ..|..++.|.+|.|.+|+|+...|.--..+++|+.|.|.+|.+... .-.-+..+++|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            445566666665421  2455666677777777777665555444556677777777766531 1123455677777777


Q ss_pred             ccccccCCC---cccccCCCCCCEEEccCCC
Q 047985          326 YECKFSGQI---PSSLSNLTHLSFLDFSLNN  353 (930)
Q Consensus       326 ~~n~l~~~~---p~~l~~l~~L~~L~Ls~n~  353 (930)
                      -+|..+..-   -..+..+++|+.||+..-.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            777665321   1235567777777776543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.71  E-value=0.0043  Score=57.92  Aligned_cols=35  Identities=20%  Similarity=0.243  Sum_probs=11.8

Q ss_pred             ccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEc
Q 047985          218 LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDL  253 (930)
Q Consensus       218 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  253 (930)
                      |.++++|+.+.+..+ +.......|.++++|+.+.+
T Consensus        31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred             ccccccccccccccc-ccccceeeeecccccccccc
Confidence            344444444444332 33222233344434444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.70  E-value=0.0044  Score=57.82  Aligned_cols=106  Identities=20%  Similarity=0.242  Sum_probs=47.0

Q ss_pred             cccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCC
Q 047985          217 SLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL  296 (930)
Q Consensus       217 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  296 (930)
                      .|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +...-...|.++++|+.+.+.. .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            355555666666653 344444455666666777776654 4433334556666666666654 3333333455556666


Q ss_pred             cEEEccCCCCCCccCcccccccccceeeccc
Q 047985          297 HWLSLASNDFSGELPASFGNLRSLRTLDVYE  327 (930)
Q Consensus       297 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  327 (930)
                      +.+++..+ +.......|.++ +|+.+.+..
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            66666543 433334445554 555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.46  E-value=0.0021  Score=65.27  Aligned_cols=67  Identities=22%  Similarity=0.254  Sum_probs=30.7

Q ss_pred             CCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCC
Q 047985          340 NLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLT  406 (930)
Q Consensus       340 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~  406 (930)
                      .+++|++|.++.|.+............+++|+++++++|+++.+..+.......+|..|++.+|..+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            3445555555555333222222333444566666666665555444333333344444444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.32  E-value=0.0013  Score=66.74  Aligned_cols=13  Identities=31%  Similarity=0.475  Sum_probs=5.5

Q ss_pred             cCCcEEEccCCCC
Q 047985          294 TQLHWLSLASNDF  306 (930)
Q Consensus       294 ~~L~~L~Ls~N~l  306 (930)
                      ++|++|++++|++
T Consensus        91 P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   91 PNLKVLNLSGNKI  103 (260)
T ss_pred             CceeEEeecCCcc
Confidence            4444444444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.82  E-value=0.0019  Score=75.50  Aligned_cols=131  Identities=31%  Similarity=0.286  Sum_probs=61.2

Q ss_pred             CCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCc-cCCCCC----chhccCCCCCCEEEccCCC-CCCCCc
Q 047985          142 LSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDV-TISSPI----PHNLTYLSSLTTLSLSGCD-LRGRIP  215 (930)
Q Consensus       142 l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n-~l~~~~----~~~l~~l~~L~~L~L~~n~-l~~~~p  215 (930)
                      ++.|+.|.+..+..     +.+..+......+++|++|+++++ ......    ......+++|+.|+++.+. ++...-
T Consensus       187 ~~~L~~l~l~~~~~-----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l  261 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSK-----ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL  261 (482)
T ss_pred             CchhhHhhhccccc-----CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence            45566666655521     111123344555666666666552 111111    1122344666666666665 443322


Q ss_pred             cccc-CCCCCcEEEccCCC-CCCch-hhhhcCCCCCCEEEccCCCCCCC--cchhhcCCCCCCEEEc
Q 047985          216 SSLG-NITRLIHLDLSFNK-LSDEL-PTFIGTLGSLKELDLLQNNLSGE--LPNSIGNLASLEQVDL  277 (930)
Q Consensus       216 ~~l~-~l~~L~~L~Ls~n~-l~~~~-p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L  277 (930)
                      ..+. .+++|++|.+..+. +++.. -.....++.|++|+++++.....  +.....++++|+.|.+
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            2332 25666666665555 34332 22234456677777776654311  2222334555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.72  E-value=0.0023  Score=74.87  Aligned_cols=174  Identities=25%  Similarity=0.185  Sum_probs=92.1

Q ss_pred             hhCCCCCCEEEcCCccCCCC--CchhccCCCCCCEEEccCC-CCCCCCc----ccccCCCCCcEEEccCCC-CCCchhhh
Q 047985          170 ADKLTNLKELVLGDVTISSP--IPHNLTYLSSLTTLSLSGC-DLRGRIP----SSLGNITRLIHLDLSFNK-LSDELPTF  241 (930)
Q Consensus       170 l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~-l~~~~p~~  241 (930)
                      ...++.|+.|.+.++.-...  .......+++|+.|+++++ ......+    .....+++|+.|+++.+. +++..-..
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            34467788887777643332  2344556788888888763 2211111    223455777888888776 55554444


Q ss_pred             hcC-CCCCCEEEccCCC-CCCC-cchhhcCCCCCCEEEccCCCCCCC--CCCCCCCCcCCcEEEccCCCCCCccCccccc
Q 047985          242 IGT-LGSLKELDLLQNN-LSGE-LPNSIGNLASLEQVDLSLNRFLGK--VPSSLGNLTQLHWLSLASNDFSGELPASFGN  316 (930)
Q Consensus       242 l~~-l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  316 (930)
                      +.. +++|++|.+.++. ++.. +-.....+++|++|+++++.....  +.....++++|+.|.+....          .
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~  333 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------G  333 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------C
Confidence            443 6778888877666 4432 222234567788888877654311  11223334555544332221          1


Q ss_pred             ccccceeeccccccc---CCCcccccCCCCCCEEEccCCC
Q 047985          317 LRSLRTLDVYECKFS---GQIPSSLSNLTHLSFLDFSLNN  353 (930)
Q Consensus       317 l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~  353 (930)
                      +..++.+.+....-.   .........+++++.+.+..+.
T Consensus       334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            334444444433221   1112234456666666666665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.59  E-value=0.0042  Score=37.84  Aligned_cols=18  Identities=44%  Similarity=0.718  Sum_probs=7.4

Q ss_pred             cceeeccCccccccCcccc
Q 047985          706 LQILSLADNSLHGHIPSCL  724 (930)
Q Consensus       706 L~~L~Ls~N~l~g~ip~~l  724 (930)
                      |+.|||++|+|+ .||..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            344444444444 333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.32  E-value=0.0072  Score=36.80  Aligned_cols=21  Identities=43%  Similarity=0.713  Sum_probs=12.4

Q ss_pred             CCCeeeCCCCcCcccCCccccC
Q 047985          729 DLESLDLSNNRFSGQIPQQLVE  750 (930)
Q Consensus       729 ~L~~LdLs~N~lsg~ip~~l~~  750 (930)
                      +|++|||++|+++ .||.+|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 56655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.31  E-value=0.00088  Score=67.94  Aligned_cols=98  Identities=29%  Similarity=0.261  Sum_probs=52.5

Q ss_pred             CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCc-cCcccccccccceeec
Q 047985          247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE-LPASFGNLRSLRTLDV  325 (930)
Q Consensus       247 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L  325 (930)
                      +.+.|++-++.++..  .....++.|+.|.|+-|+++..  ..+..+++|++|+|..|.|... .-..+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            444555555555421  1234555666666666665533  2355566666666666655431 1123456677777777


Q ss_pred             ccccccCCCcc-----cccCCCCCCEEE
Q 047985          326 YECKFSGQIPS-----SLSNLTHLSFLD  348 (930)
Q Consensus       326 ~~n~l~~~~p~-----~l~~l~~L~~L~  348 (930)
                      ..|.-.|.-+.     .+..+++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            77766655443     244566666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.75  E-value=0.0026  Score=64.59  Aligned_cols=57  Identities=25%  Similarity=0.206  Sum_probs=26.7

Q ss_pred             cEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCC
Q 047985           69 HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFS  132 (930)
Q Consensus        69 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~  132 (930)
                      .|.+|+.-++++...    +-+.+++.|++|.||-|.++..   +.+..|++|++|.|..|.|.
T Consensus        20 ~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HhhhhcccCCCccHH----HHHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccc
Confidence            355555555554321    1234455555555555555432   22444455555555544443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.51  E-value=0.00097  Score=76.24  Aligned_cols=39  Identities=23%  Similarity=0.275  Sum_probs=21.3

Q ss_pred             cccceeecccccccCCC----cccccCCCCCCEEEccCCCCCC
Q 047985          318 RSLRTLDVYECKFSGQI----PSSLSNLTHLSFLDFSLNNFSG  356 (930)
Q Consensus       318 ~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~  356 (930)
                      ..+++++++.|.++..-    ...+..++.++++.++.|.+..
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            44555666666555332    2334455566666666666553

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.85  E-value=0.0017  Score=74.31  Aligned_cols=61  Identities=21%  Similarity=0.283  Sum_probs=32.4

Q ss_pred             CCEEEccCCCCCCC----CCCCCCCC-cCCcEEEccCCCCCCcc----CcccccccccceeecccccccC
Q 047985          272 LEQVDLSLNRFLGK----VPSSLGNL-TQLHWLSLASNDFSGEL----PASFGNLRSLRTLDVYECKFSG  332 (930)
Q Consensus       272 L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~n~l~~  332 (930)
                      +..|++..|++.+.    ....+..+ ..++.++++.|.++..-    ...+..++.++++.+++|.+..
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            44455555554322    11223333 45566666666665432    2334456677777777776653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.44  E-value=0.015  Score=57.79  Aligned_cols=82  Identities=22%  Similarity=0.209  Sum_probs=72.2

Q ss_pred             cccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecC
Q 047985          681 ILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVS  760 (930)
Q Consensus       681 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls  760 (930)
                      ..+.||++.|++- ..-..|.-++.|..||++.|++. ..|..++++..+..+++..|..+ ..|.++..++.++++++-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            4788999999986 44556777889999999999997 88999999999999999999998 689999999999999999


Q ss_pred             CCccc
Q 047985          761 DNHFT  765 (930)
Q Consensus       761 ~N~L~  765 (930)
                      .|.|.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            99865

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=87.71  E-value=0.29  Score=27.60  Aligned_cols=11  Identities=45%  Similarity=0.736  Sum_probs=3.3

Q ss_pred             cceeeccCccc
Q 047985          706 LQILSLADNSL  716 (930)
Q Consensus       706 L~~L~Ls~N~l  716 (930)
                      |+.|+|++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.22  E-value=0.024  Score=56.30  Aligned_cols=82  Identities=21%  Similarity=0.111  Sum_probs=66.2

Q ss_pred             CCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCc
Q 047985           67 TGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLA  146 (930)
Q Consensus        67 ~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  146 (930)
                      ..+|+.||++.+.+...- .  .+..++.|..||++.|.+.-  +|..++.+..++.+++..|..+ ..|.+++.+++++
T Consensus        41 ~kr~tvld~~s~r~vn~~-~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLG-K--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             cceeeeehhhhhHHHhhc-c--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            357999999988774321 1  56677888889999888753  6888888999999999988887 7888899999999


Q ss_pred             EEEccCCC
Q 047985          147 YLDLSHNS  154 (930)
Q Consensus       147 ~L~Ls~n~  154 (930)
                      ++++-++.
T Consensus       115 ~~e~k~~~  122 (326)
T KOG0473|consen  115 KNEQKKTE  122 (326)
T ss_pred             hhhhccCc
Confidence            99998884

>smart00370 LRR Leucine-rich repeats, outliers

Probab=82.92  E-value=0.83  Score=28.91  Aligned_cols=14  Identities=57%  Similarity=0.835  Sum_probs=7.4

Q ss_pred             CCCCeeeCCCCcCc
Q 047985          728 TDLESLDLSNNRFS  741 (930)
Q Consensus       728 ~~L~~LdLs~N~ls  741 (930)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=82.92  E-value=0.83  Score=28.91  Aligned_cols=14  Identities=57%  Similarity=0.835  Sum_probs=7.4

Q ss_pred             CCCCeeeCCCCcCc
Q 047985          728 TDLESLDLSNNRFS  741 (930)
Q Consensus       728 ~~L~~LdLs~N~ls  741 (930)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.47  E-value=0.23  Score=30.86  Aligned_cols=16  Identities=50%  Similarity=0.827  Sum_probs=6.6

Q ss_pred             CCCCeeeCCCCcCccc
Q 047985          728 TDLESLDLSNNRFSGQ  743 (930)
Q Consensus       728 ~~L~~LdLs~N~lsg~  743 (930)
                      ++|++|||++|++++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            3444555555554433

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	930
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-58
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-16
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-58
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-17
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		4e-06
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		5e-06
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		1e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		4e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		4e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		4e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  223 bits (567), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 234/786 (29%), Positives = 345/786 (43%), Gaps = 164/786 (20%)
Query: 57  SWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII 116
           S  G +C   +  +  LDLS + L G + + +SL     L++L+++ N  D         
Sbjct: 92  SVSGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--------- 139
Query: 117 XXXXXXXXXXXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176
                         F G++ S  L+L+ L  LDLS NS      +       L+D    L
Sbjct: 140 --------------FPGKV-SGGLKLNSLEVLDLSANSISGANVVGWV----LSDGCGEL 180
Query: 177 KELVLGDVTISSPIPHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIHL---DLSFNK 233
           K L +    IS  +                             +++R ++L   D+S N 
Sbjct: 181 KHLAISGNKISGDV-----------------------------DVSRCVNLEFLDVSSNN 211
Query: 234 LSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL 293
            S  +P F+G   +L+ LD+  N LSG+   +I     L+ +++S N+F+G +P     L
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268
Query: 294 TQLHWLSLASNDFSGELPASF-GNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352
             L +LSLA N F+GE+P    G   +L  LD+    F G +P    + + L  L  S N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 353 NFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412
           NFSG++ +D  L+  + L  L LS N  S                         E+P+ L
Sbjct: 329 NFSGELPMDT-LLKMRGLKVLDLSFNEFS------------------------GELPESL 363
Query: 413 KN-QHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHP-NTVNYL-VS 469
            N    L  LDL+SN  +G +                     L    Q+P NT+  L + 
Sbjct: 364 TNLSASLLTLDLSSNNFSGPI---------------------LPNLCQNPKNTLQELYLQ 402
Query: 470 NNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD 529
           NN  TG+IP  + N S  L SL LS+N LSG +P  LG+ S  L  L L  N   G IP 
Sbjct: 403 NNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQ 460
Query: 530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLI 589
            L+    L+ + L  N L G IP  L+NC+NL ++ L +N++    P W+G L +L +L 
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 590 LKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF------------------- 630
           L +N F G I     DC    L  +DL+ N F G +P+  F                   
Sbjct: 521 LSNNSFSGNIPAELGDC--RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 631 -------QCWNA-----MKVVNASELRYMQEVIPFNEGNGIYD--YSLTMSNKGQMMSYK 676
                  +C  A      + + + +L  +    P N  + +Y    S T  N G MM   
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM--- 635
Query: 677 KIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLS 736
                   + +S N   G IP  I ++  L IL+L  N + G IP  +G+L  L  LDLS
Sbjct: 636 -------FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 737 NNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSE 796
           +N+  G+IPQ +  LT L   ++S+N+ +GPIP+  QF TF    F  N GLCG PL   
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PR 747
Query: 797 CEISEA 802
           C+ S A
Sbjct: 748 CDPSNA 753

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 164/339 (48%), Gaps = 46/339 (13%)
Query: 467 LVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP--QCLGNFSDWLSILDLQHNK-- 522
            +SN+ + G +  + C+ S  L SLDLS N+LSG +     LG+ S  L  L++  N   
Sbjct: 83  FLSNSHINGSVSGFKCSAS--LTSLDLSRNSLSGPVTTLTSLGSCSG-LKFLNVSSNTLD 139
Query: 523 FSGTIPDNLLKGNILKVIDLSDNLLQG-----------------------RIPR--SLAN 557
           F G +    LK N L+V+DLS N + G                       +I     ++ 
Sbjct: 140 FPGKVSGG-LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR 198
Query: 558 CSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLS 617
           C NLEFLD+  N      P +LG    L  L +  NK  G      + C   +L+++++S
Sbjct: 199 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTC--TELKLLNIS 255
Query: 618 KNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNK---GQMMS 674
            N+F G +P +  +   +++ ++ +E ++  E+  F  G       L +S     G +  
Sbjct: 256 SNQFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 675 YKKIPDILTAVILSSNRFDGEIPT-SISNLKGLQILSLADNSLHGHIPSCLGNLT-DLES 732
           +     +L ++ LSSN F GE+P  ++  ++GL++L L+ N   G +P  L NL+  L +
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 733 LDLSNNRFSGQIPQQLVE--LTFLEFFNVSDNHFTGPIP 769
           LDLS+N FSG I   L +     L+   + +N FTG IP
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  222 bits (566), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 236/799 (29%), Positives = 349/799 (43%), Gaps = 168/799 (21%)
Query: 57  SWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII 116
           S  G +C   +  +  LDLS + L G + + +SL     L++L+++ N  D         
Sbjct: 89  SVSGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--------- 136
Query: 117 XXXXXXXXXXXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176
                         F G++ S  L+L+ L  LDLS NS      +       L+D    L
Sbjct: 137 --------------FPGKV-SGGLKLNSLEVLDLSANSISGANVVGWV----LSDGCGEL 177
Query: 177 KELVLGDVTISSPIPHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIHL---DLSFNK 233
           K L +    IS  +                             +++R ++L   D+S N 
Sbjct: 178 KHLAISGNKISGDV-----------------------------DVSRCVNLEFLDVSSNN 208
Query: 234 LSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL 293
            S  +P F+G   +L+ LD+  N LSG+   +I     L+ +++S N+F+G +P     L
Sbjct: 209 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 265
Query: 294 TQLHWLSLASNDFSGELPASF-GNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352
             L +LSLA N F+GE+P    G   +L  LD+    F G +P    + + L  L  S N
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 353 NFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412
           NFSG++ +D  L+  + L  L LS N  S                         E+P+ L
Sbjct: 326 NFSGELPMDT-LLKMRGLKVLDLSFNEFS------------------------GELPESL 360
Query: 413 KN-QHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHP-NTVNYL-VS 469
            N    L  LDL+SN  +G +                     L    Q+P NT+  L + 
Sbjct: 361 TNLSASLLTLDLSSNNFSGPI---------------------LPNLCQNPKNTLQELYLQ 399
Query: 470 NNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD 529
           NN  TG+IP  + N S  L SL LS+N LSG +P  LG+ S  L  L L  N   G IP 
Sbjct: 400 NNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQ 457
Query: 530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLI 589
            L+    L+ + L  N L G IP  L+NC+NL ++ L +N++    P W+G L +L +L 
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 590 LKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF------------------- 630
           L +N F G I     DC    L  +DL+ N F G +P+  F                   
Sbjct: 518 LSNNSFSGNIPAELGDC--RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 631 -------QCWNA-----MKVVNASELRYMQEVIPFNEGNGIYD--YSLTMSNKGQMMSYK 676
                  +C  A      + + + +L  +    P N  + +Y    S T  N G MM   
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM--- 632
Query: 677 KIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLS 736
                   + +S N   G IP  I ++  L IL+L  N + G IP  +G+L  L  LDLS
Sbjct: 633 -------FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 737 NNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSE 796
           +N+  G+IPQ +  LT L   ++S+N+ +GPIP+  QF TF    F  N GLCG PL   
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PR 744
Query: 797 CEISEAPTNEDQIEDSEES 815
           C+    P+N D     + S
Sbjct: 745 CD----PSNADGYAHHQRS 759

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 85.9 bits (211), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 164/339 (48%), Gaps = 46/339 (13%)
Query: 467 LVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP--QCLGNFSDWLSILDLQHNK-- 522
            +SN+ + G +  + C+ S  L SLDLS N+LSG +     LG+ S  L  L++  N   
Sbjct: 80  FLSNSHINGSVSGFKCSAS--LTSLDLSRNSLSGPVTTLTSLGSCSG-LKFLNVSSNTLD 136
Query: 523 FSGTIPDNLLKGNILKVIDLSDNLLQG-----------------------RIPR--SLAN 557
           F G +    LK N L+V+DLS N + G                       +I     ++ 
Sbjct: 137 FPGKVSGG-LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR 195
Query: 558 CSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLS 617
           C NLEFLD+  N      P +LG    L  L +  NK  G      + C   +L+++++S
Sbjct: 196 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTC--TELKLLNIS 252
Query: 618 KNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNK---GQMMS 674
            N+F G +P +  +   +++ ++ +E ++  E+  F  G       L +S     G +  
Sbjct: 253 SNQFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 675 YKKIPDILTAVILSSNRFDGEIPT-SISNLKGLQILSLADNSLHGHIPSCLGNLT-DLES 732
           +     +L ++ LSSN F GE+P  ++  ++GL++L L+ N   G +P  L NL+  L +
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 733 LDLSNNRFSGQIPQQLVE--LTFLEFFNVSDNHFTGPIP 769
           LDLS+N FSG I   L +     L+   + +N FTG IP
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 130/320 (40%), Gaps = 56/320 (17%)
Query: 506 LGN---FSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSD-NLLQGR-IPRSLANCSN 560
           LGN    S WL   D  +  + G + D   +   +  +DLS  NL +   IP SLAN   
Sbjct: 18  LGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77
Query: 561 LEFLDLGD-NQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKN 619
           L FL +G  N +    P  +  L  L+ L +      G I  P        L  +D S N
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--PDFLSQIKTLVTLDFSYN 135
Query: 620 RFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMM-SYKKI 678
             +G LP       N + +                +GN I          G +  SY   
Sbjct: 136 ALSGTLPPSISSLPNLVGITF--------------DGNRI---------SGAIPDSYGSF 172
Query: 679 PDILTAVILSSNRFDGEIPTSISNL-----------------------KGLQILSLADNS 715
             + T++ +S NR  G+IP + +NL                       K  Q + LA NS
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232
Query: 716 LHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFA 775
           L   +   +G   +L  LDL NNR  G +PQ L +L FL   NVS N+  G IPQG    
Sbjct: 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291
Query: 776 TFDKTSFDGNSGLCGRPLSS 795
            FD +++  N  LCG PL +
Sbjct: 292 RFDVSAYANNKCLCGSPLPA 311

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 89/218 (40%), Gaps = 7/218 (3%)
Query: 149 DLSHNSYYDPVELRKPSLGNLAD-KLTNLKELVLGDVTISSPIPHNXXXXXXXXXXXXXG 207
           D S+N  +  +EL     G     KL +LK L        +                  G
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIG 267
              +G    S    T L +LDLSFN +      F+G L  L+ LD   +NL      S+ 
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVF 417
Query: 268 -NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE-LPASFGNLRSLRTLDV 325
            +L +L  +D+S              L+ L  L +A N F    LP  F  LR+L  LD+
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
            +C+     P++ ++L+ L  L+ S NNF     LD F
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FSLDTF 512

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 207 GCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI 266
           G   +G    S    T L +LDLSFN +      F+G L  L+ LD   +NL      S+
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSV 121
Query: 267 G-NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE-LPASFGNLRSLRTLD 324
             +L +L  +D+S              L+ L  L +A N F    LP  F  LR+L  LD
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 325 VYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
           + +C+     P++ ++L+ L  L+ S NNF     LD F
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FSLDTF 217

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 125/295 (42%), Gaps = 35/295 (11%)
Query: 487 RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNL 546
           R++ LDL+  +L+GL     G   + L  L L  N F     D L + N      L D  
Sbjct: 278 RVQELDLTAAHLNGLPSGIEG--MNSLKKLVLNANSF-----DQLCQINAASFPSLRDLY 330
Query: 547 LQGRI------PRSLANCSNLEFLDLGDNQIR--DIFPSWLGTLPDLNVLILKSNKFHGL 598
           ++G +       R L    NL+ LDL  + I   D     L  L  L  L L  N+  GL
Sbjct: 331 IKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGL 390
Query: 599 IREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASE----------LRYMQ 648
             +   +C  P+L ++D++      K P   FQ  + ++V+N S           L  +Q
Sbjct: 391 EDQAFKEC--PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQ 448
Query: 649 EVIPFN-EGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQ 707
           ++   N +GN   D S++ +N  QM+   +I      +ILSS         +   L+ + 
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQMVGSLEI------LILSSCNLLSIDQQAFHGLRNVN 502
Query: 708 ILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDN 762
            L L+ NSL G     L +L  L  L++++N      P  L  L+     N+S N
Sbjct: 503 HLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 88/218 (40%), Gaps = 7/218 (3%)
Query: 149 DLSHNSYYDPVELRKPSLGNLAD-KLTNLKELVLGDVTISSPIPHNXXXXXXXXXXXXXG 207
           D S+N  +  +EL     G     KL +LK L        +                  G
Sbjct: 323 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 382
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIG 267
              +G    S      L +LDLSFN +      F+G L  L+ LD   +NL      S+ 
Sbjct: 383 LSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVF 441
Query: 268 -NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE-LPASFGNLRSLRTLDV 325
            +L +L  +D+S              L+ L  L +A N F    LP  F  LR+L  LD+
Sbjct: 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501
Query: 326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
            +C+     P++ ++L+ L  L+ S NNF     LD F
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FSLDTF 536

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
           L N+T L  LD+S NK+SD         L + I T         LG L  LD L   L+G
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 226
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
                IG LASL     +DL+ N+     P  L  LT+L  L L +N  S   P     L
Sbjct: 227 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
            +L  L++ E +     P  +SNL +L++L    NN S     DI  V+    L  LF S
Sbjct: 283 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFS 335
Query: 377 TNRLS 381
            N++S
Sbjct: 336 NNKVS 340

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 146/362 (40%), Gaps = 79/362 (21%)
Query: 218 LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL 277
           L N+T+L+ + ++ N+++D  P  +  L +L  L L  N ++   P  + NL +L +++L
Sbjct: 81  LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 278 SLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS 337
           S N       S+L  LT L  LS +SN  +   P    NL +L  LD+   K S    S 
Sbjct: 137 SSNTI--SDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISV 190
Query: 338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRA 397
           L+ LT+L  L  + N  S    L I                                   
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGIL-----------------------------TNLDE 221
Query: 398 VSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGF 457
           +SL    L +I   L +  +L  LDLA+N+I+   P       +     L L  N ++  
Sbjct: 222 LSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNI 276
Query: 458 DQHPNTV---NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLS 514
                     N  ++ N L  E  S I NL N L  L L +NN+S + P          S
Sbjct: 277 SPLAGLTALTNLELNENQL--EDISPISNLKN-LTYLTLYFNNISDISPVS--------S 325
Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
           +  LQ   FS             KV D+S          SLAN +N+ +L  G NQI D+
Sbjct: 326 LTKLQRLFFSNN-----------KVSDVS----------SLANLTNINWLSAGHNQISDL 364
Query: 575 FP 576
            P
Sbjct: 365 TP 366

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
           L N+T L  LD+S NK+SD         L + I T         LG L  LD L   L+G
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 225
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
                IG LASL     +DL+ N+     P  L  LT+L  L L +N  S   P     L
Sbjct: 226 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 281
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
            +L  L++ E +     P  +SNL +L++L    NN S     DI  V+    L  LF S
Sbjct: 282 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFS 334
Query: 377 TNRLS 381
            N++S
Sbjct: 335 NNKVS 339

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
           L N+T L  LD+S NK+SD         L + I T         LG L  LD L   L+G
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 229
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
                IG LASL     +DL+ N+     P  L  LT+L  L L +N  S   P     L
Sbjct: 230 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 285
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
            +L  L++ E +     P  +SNL +L++L    NN S     DI  V+    L  LF +
Sbjct: 286 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFA 338
Query: 377 TNRLS 381
            N++S
Sbjct: 339 NNKVS 343

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
           L N+T L  LD+S NK+SD         L + I T         LG L  LD L   L+G
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 226
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
                IG LASL     +DL+ N+     P  L  LT+L  L L +N  S   P     L
Sbjct: 227 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
            +L  L++ E +     P  +SNL +L++L    NN S     DI  V+    L  LF  
Sbjct: 283 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFY 335
Query: 377 TNRLS 381
            N++S
Sbjct: 336 NNKVS 340

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
           L N+T L  LD+S NK+SD         L + I T         LG L  LD L   L+G
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 230
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
                IG LASL     +DL+ N+     P  L  LT+L  L L +N  S   P     L
Sbjct: 231 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
            +L  L++ E +     P  +SNL +L++L    NN S     DI  V+    L  LF  
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFY 339
Query: 377 TNRLS 381
            N++S
Sbjct: 340 NNKVS 344

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
           L N+T L  LD+S NK+SD         L + I T         LG L  LD L   L+G
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 226
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
                IG LASL     +DL+ N+     P  L  LT+L  L L +N  S   P     L
Sbjct: 227 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
            +L  L++ E +     P  +SNL +L++L    NN S     DI  V+    L  LF  
Sbjct: 283 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFY 335
Query: 377 TNRLS 381
            N++S
Sbjct: 336 NNKVS 340

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
           L N+T L  LD+S NK+SD         L + I T         LG L  LD L   L+G
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 225
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
                IG LASL     +DL+ N+     P  L  LT+L  L L +N  S   P     L
Sbjct: 226 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 281
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
            +L  L++ E +     P  +SNL +L++L    NN S     DI  V+    L  LF  
Sbjct: 282 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFY 334
Query: 377 TNRLS 381
            N++S
Sbjct: 335 NNKVS 339

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 85/214 (39%), Gaps = 4/214 (1%)
Query: 149 DLSHNSYYDPVELRKPSLGNLAD-KLTNLKELVLGDVTISSPIPHNXXXXXXXXXXXXXG 207
           D S+N  +  +EL     G     KL +LK L        +                  G
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIG 267
              +G    S    T L +LDLSFN +      F+G L  L+ LD   +NL      S+ 
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVF 417
Query: 268 -NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE-LPASFGNLRSLRTLDV 325
            +L +L  +D+S              L+ L  L +A N F    LP  F  LR+L  LD+
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMD 359
            +C+     P++ ++L+ L  L+ + N      D
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 132/323 (40%), Gaps = 31/323 (9%)
Query: 293 LTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS--LSNLTHLSFLDFS 350
           L+ L  L L  N F      +F  L +L  L + +C   G + S      LT L  L   
Sbjct: 78  LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 351 LNNFSGKMDLDIFLVNHKLLYHLFLSTNRL-SLLTKATSNTTSHRFRAVSLCSCDLTEIP 409
            NN   K+    F +N +  + L L+ N++ S+  +   N     F  + L S  L ++ 
Sbjct: 138 DNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196
Query: 410 KF----------LKNQHHLELLDLASNKINGKVPKWLLDP-SMQNFGHLNLSHNFLTGFD 458
           ++           KN   +  LDL+ N     + K   D  +      L LS+++  G  
Sbjct: 197 EYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255
Query: 459 -QHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILD 517
             H N  +    N +  G   S +       ++ DLS + +  LL     +F+D L  L 
Sbjct: 256 FGHTNFKD--PDNFTFKGLEASGV-------KTCDLSKSKIFALLKSVFSHFTD-LEQLT 305
Query: 518 LQHNKFSGTIPDNLLKG--NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF 575
           L  N+ +  I DN   G  ++LK ++LS N L     R   N   LE LDL  N IR + 
Sbjct: 306 LAQNEIN-KIDDNAFWGLTHLLK-LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363
Query: 576 PSWLGTLPDLNVLILKSNKFHGL 598
                 LP+L  L L +N+   +
Sbjct: 364 DQSFLGLPNLKELALDTNQLKSV 386

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Query: 661 DYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHI 720
           D  +  SNKG  +  K IP  +T + L  N+F   +P  +SN K L ++ L++N +    
Sbjct: 12  DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLS 70
Query: 721 PSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKT 780
                N+T L +L LS NR     P+    L  L   ++  N  +  +P+G     F+  
Sbjct: 71  NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEG----AFNDL 125
Query: 781 SFDGNSGLCGRPLSSECEI 799
           S   +  +   PL  +C +
Sbjct: 126 SALSHLAIGANPLYCDCNM 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	930
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-102
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-80
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-79
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-75
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-74
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-69
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-64
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-64
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-50
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-48
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-42
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-36
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  626 bits (1616), Expect = 0.0
 Identities = 238/836 (28%), Positives = 355/836 (42%), Gaps = 113/836 (13%)

Query: 4   PLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQC 63
                 E   L+ FK+ L                       W     +N + C++DGV C
Sbjct: 7   SQSLYREIHQLISFKDVLPDK---------------NLLPDWS----SNKNPCTFDGVTC 47

Query: 64  NENTGHVIKLDLSSSCLQGSINS-SSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLS 122
                 V  +DLSS  L    ++ SSSL  L  LE L L+ +  +GS         +SL+
Sbjct: 48  R--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLT 103

Query: 123 YLNLSSAAFSGQIPS--EILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELV 180
            L+LS  + SG + +   +   S L +L++S N+   P ++       L     +L+ L 
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV--SGGLKL----NSLEVLD 157

Query: 181 LGDVTISSPIPHNLTY---LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDE 237
           L   +IS               L  L++SG  + G +   +     L  LD+S N  S  
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 215

Query: 238 LPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLH 297
           +P F+G   +L+ LD+  N LSG+   +I     L+ +++S N+F+G +P     L  L 
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272

Query: 298 WLSLASNDFSGELPAS-FGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG 356
           +LSLA N F+GE+P    G   +L  LD+    F G +P    + + L  L  S NNFSG
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332

Query: 357 KMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKN-Q 415
           ++ +D  L+  + L  L LS N  S                         E+P+ L N  
Sbjct: 333 ELPMD-TLLKMRGLKVLDLSFNEFS------------------------GELPESLTNLS 367

Query: 416 HHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTG 475
             L  LDL+SN  +G +   L          L L                    NN  TG
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ-------------------NNGFTG 408

Query: 476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGN 535
           +IP  + N S  L SL LS+N LSG +P  LG+ S  L  L L  N   G IP  L+   
Sbjct: 409 KIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVK 466

Query: 536 ILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKF 595
            L+ + L  N L G IP  L+NC+NL ++ L +N++    P W+G L +L +L L +N F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526

Query: 596 HGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQE------ 649
            G I  P        L  +DL+ N F G +P+  F+    +     +  RY+        
Sbjct: 527 SGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584

Query: 650 --------------VIPFNEGNGIYDYSLTMSN---KGQMMSYKKIPDILTAVILSSNRF 692
                         +               +++    G           +  + +S N  
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 693 DGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELT 752
            G IP  I ++  L IL+L  N + G IP  +G+L  L  LDLS+N+  G+IPQ +  LT
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 753 FLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISEAPTNEDQ 808
            L   ++S+N+ +GPIP+  QF TF    F  N GLCG PL      +       Q
Sbjct: 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ 760

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  332 bits (854), Expect = e-102
 Identities = 126/648 (19%), Positives = 213/648 (32%), Gaps = 44/648 (6%)

Query: 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN 232
            TN+  L L    +      N T  S LT+L +    +    P     +  L  L+L  N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 233 KLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN 292
           +LS           +L EL L+ N++     N      +L  +DLS N        +   
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 293 LTQLHWLSLASNDFSGELPASFG--NLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFS 350
           L  L  L L++N                SL+ L++   +     P     +  L  L  +
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 351 LNNFSGKMDLDIFL-VNHKLLYHLFLSTNRLSLLTKAT-SNTTSHRFRAVSLCSCDLTEI 408
                  +   + L + +  + +L LS ++LS  +  T           + L   +L  +
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 409 -PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQ-------H 460
                     LE   L  N I       L    + N  +LNL  +F              
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLH--GLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 461 PNTVNYL-------VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDW- 512
             +  +L       + +N + G   +    L N L+ L LS +  S L       F    
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTS-LRTLTNETFVSLA 379

Query: 513 ---LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRS-LANCSNLEFLDLGD 568
              L IL+L  NK S    D       L+V+DL  N +   +         N+  + L  
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 569 NQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSM 628
           N+   +  +    +P L  L+L+      +   P        L I+DLS N     +   
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDD 498

Query: 629 AFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILS 688
             +    +++++                N +       +  G +   K +   L  + L 
Sbjct: 499 MLEGLEKLEILDLQ-------------HNNLARLWKHANPGGPIYFLKGLSH-LHILNLE 544

Query: 689 SNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQL 748
           SN FD        +L  L+I+ L  N+L+    S   N   L+SL+L  N  +    +  
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 749 -VELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSS 795
                 L   ++  N F         F  +   +      L    L +
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCN 652

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  257 bits (659), Expect = 1e-74
 Identities = 111/601 (18%), Positives = 190/601 (31%), Gaps = 127/601 (21%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK 249
           +P +L   +++T L+L+   LR    ++    ++L  LD+ FN +S   P     L  LK
Sbjct: 19  VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76

Query: 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE 309
            L+L  N LS     +     +L ++ L  N       +       L  L L+ N  S  
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 310 LPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKL 369
              +   L +L+ L +   K        L    + S                        
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS------------------------ 172

Query: 370 LYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKIN 429
           L  L LS+N++                            P        L  L L + ++ 
Sbjct: 173 LKKLELSSNQIK------------------------EFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 430 GKVPKWL-LDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLV-------SNNSLTGEIPSWI 481
             + + L L+ +  +  +L+LS++ L+                    S N+L        
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 482 CNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI----- 536
             L   LE   L YNN+  L    L    + +  L+L+ +    +I    L         
Sbjct: 269 AWLPQ-LEYFFLEYNNIQHLFSHSLHGLFN-VRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 537 ----LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQI------RDIFPSWLGTLPDLN 586
               L+ +++ DN + G          NL++L L ++         + F S       L+
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLH 384

Query: 587 VLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRY 646
           +L L  NK   +            L ++DL  N    +L    ++    +  +       
Sbjct: 385 ILNLTKNKISKIE--SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY------ 436

Query: 647 MQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGL 706
                                                   LS N++      S + +  L
Sbjct: 437 ----------------------------------------LSYNKYLQLTRNSFALVPSL 456

Query: 707 QILSLADNSLHG--HIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHF 764
           Q L L   +L      PS    L +L  LDLSNN  +      L  L  LE  ++  N+ 
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 765 T 765
            
Sbjct: 517 A 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  208 bits (532), Expect = 3e-57
 Identities = 99/500 (19%), Positives = 174/500 (34%), Gaps = 60/500 (12%)

Query: 66  NTGHVIKLDLSSSCLQGSINSS-SSLFKLVHLEWLDLAFNDFDGSEIPPEII---NLSSL 121
             G +  L L++  L  S+            +  L L+ +    S            ++L
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL--STTSNTTFLGLKWTNL 250

Query: 122 SYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLA--DKLTNLKEL 179
           + L+LS    +         L +L Y  L +N+           L N+   +   +  + 
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 180 VLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLS---D 236
            +   ++      +  +L  L  L++   D+ G   +    +  L +L LS +  S    
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 237 ELPTFIG-TLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVP-SSLGNLT 294
              TF+      L  L+L +N +S    ++   L  LE +DL LN    ++       L 
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 295 QLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG--QIPSSLSNLTHLSFLDFSLN 352
            +  + L+ N +      SF  + SL+ L +           PS    L +L+ LD S N
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 353 NFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412
           N +   D    L   + L  L L  N L+ L K                  +      FL
Sbjct: 491 NIANINDD--MLEGLEKLEILDLQHNNLARLWKHA----------------NPGGPIYFL 532

Query: 413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNS 472
           K   HL +L+L SN  +    +      +     ++L                     N+
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVF--KDLFELKIIDLGL-------------------NN 571

Query: 473 LTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD--- 529
           L     S   N  + L+SL+L  N ++ +  +  G     L+ LD++ N F  T      
Sbjct: 572 LNTLPASVFNNQVS-LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630

Query: 530 --NLLKGNILKVIDLSDNLL 547
             N +      + +LS + L
Sbjct: 631 FVNWINETHTNIPELSSHYL 650

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  130 bits (328), Expect = 3e-31
 Identities = 52/291 (17%), Positives = 95/291 (32%), Gaps = 32/291 (10%)

Query: 485 SNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSD 544
           +   E  D S+  L+ +      N    +++L+L HN+       N  + + L  +D+  
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPTN----ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 545 NLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKT 604
           N +    P        L+ L+L  N++  +         +L  L L SN    +      
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK--NNP 116

Query: 605 DCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSL 664
                 L  +DLS N  +             ++ +  S           N+   +    L
Sbjct: 117 FVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLS----------NNKIQALKSEEL 165

Query: 665 TMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCL 724
            +               L  + LSSN+     P     +  L  L L +  L   +   L
Sbjct: 166 DIFANSS----------LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 725 G---NLTDLESLDLSNNRFSGQIPQQLVELTF--LEFFNVSDNHFTGPIPQ 770
                 T + +L LSN++ S       + L +  L   ++S N+       
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  280 bits (718), Expect = 2e-83
 Identities = 102/707 (14%), Positives = 207/707 (29%), Gaps = 149/707 (21%)

Query: 80  LQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEI 139
           L G   S           W      D  G++    + +   ++ L+L     SG++P  I
Sbjct: 42  LNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAI 101

Query: 140 LELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSS 199
            +L++L  L L  +                                     P  ++   S
Sbjct: 102 GQLTELEVLALGSHGEKVN---------------------------ERLFGPKGISANMS 134

Query: 200 LTTLSLSGCDLRGRIPSSLG--NITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN 257
                      +          + + LI   ++ +     +           ++  L NN
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 258 LSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
           ++  +  ++  L  L Q  +  + F+ +              +             + NL
Sbjct: 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNL 248

Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLD------IFLVNHKLLY 371
           + L  ++VY C    ++P+ L  L  +  ++ + N       L             + + 
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 372 HLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGK 431
            +++  N L                           +   L+    L +L+   N++ GK
Sbjct: 309 IIYIGYNNLKTFP-----------------------VETSLQKMKKLGMLECLYNQLEGK 345

Query: 432 VPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESL 491
           +P +  +  +     LNL++N +T                     IP+  C  + ++E+L
Sbjct: 346 LPAFGSEIKLA---SLNLAYNQITE--------------------IPANFCGFTEQVENL 382

Query: 492 DLSYNNLSGLLPQ-CLGNFSDWLSILDLQHNKFSG-------TIPDNLLKGNILKVIDLS 543
             ++N L  +       + S  +S +D  +N+           +     KG  +  I+LS
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSV-MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441

Query: 544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDI-------FPSWLGTLPDLNVLILKSNKFH 596
           +N +        +  S L  ++L  N + +I                 L  + L+ NK  
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501

Query: 597 GLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEG 656
            L  +       P L  IDLS N F+   P+              S L+           
Sbjct: 502 KLSDDF-RATTLPYLVGIDLSYNSFSK-FPTQPLNS---------STLKGF--------- 541

Query: 657 NGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSL 716
                                   I        NR   E P  I+    L  L +  N +
Sbjct: 542 -----------------------GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

Query: 717 HGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNH 763
              +   +    ++  LD+ +N         +        + +  + 
Sbjct: 579 RK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  279 bits (715), Expect = 8e-83
 Identities = 96/623 (15%), Positives = 194/623 (31%), Gaps = 97/623 (15%)

Query: 40  PKAASWKPEEGNNIDCCSW---DGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHL 96
              A+W      N +   W    GV  N + G V  L L      G +    ++ +L  L
Sbjct: 55  QPGANWNF----NKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRV--PDAIGQLTEL 107

Query: 97  EWLDLAFNDFDGSE---IPPEIINLSSLSYLNLSSAAFSGQIPSEI--LELSKLAYLDLS 151
           E L L  +    +E    P  I    S          +           + S L    ++
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 152 HNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR 211
            +    P +        +        ++      I+  +   +  L+ L    +      
Sbjct: 168 SD----PQQKSIKKSSRI---TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV 219

Query: 212 G-------------------RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELD 252
                                      N+  L  +++       +LPTF+  L  ++ ++
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

Query: 253 LLQNNL--------SGELPNSIGNLASLEQVDLSLNRFL-GKVPSSLGNLTQLHWLSLAS 303
           +  N            +          ++ + +  N      V +SL  + +L  L    
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

Query: 304 NDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
           N   G+LP +FG+   L +L++   + +    +       +  L F+ N     +     
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFD 397

Query: 364 LVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDL 423
             +  ++  +  S N +                  S+   +   +        ++  ++L
Sbjct: 398 AKSVSVMSAIDFSYNEIG-----------------SVDGKNFDPLDPTPFKGINVSSINL 440

Query: 424 ASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICN 483
           ++N+I+    +     +      +NL  N LT                +   +      N
Sbjct: 441 SNNQISKFPKELFS--TGSPLSSINLMGNMLTEI------------PKNSLKDENENFKN 486

Query: 484 LSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLS 543
               L S+DL +N L+ L          +L  +DL +N FS   P   L  + LK   + 
Sbjct: 487 TYL-LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 544 DNL------LQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHG 597
           +             P  +  C +L  L +G N IR +        P+++VL +K N    
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITPNISVLDIKDNPNIS 601

Query: 598 LIREPKTDCGFPKLRIIDLSKNR 620
           +       C + +  +  L  ++
Sbjct: 602 ID--LSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  236 bits (603), Expect = 3e-67
 Identities = 79/534 (14%), Positives = 169/534 (31%), Gaps = 85/534 (15%)

Query: 64  NENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSY 123
            E+   +IK  ++S   Q SI  SS +   +    +    N+   + +   ++ L+ L  
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRI--TLKDTQIGQLSNNI--TFVSKAVMRLTKLRQ 210

Query: 124 LNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGD 183
             + ++ F  +   E  E     Y                    NL     +L ++ + +
Sbjct: 211 FYMGNSPFVAENICEAWENENSEYAQQYKTED--------LKWDNL----KDLTDVEVYN 258

Query: 184 VTISSPIPHNLTYLSSLTTLSLSGCDLR--------GRIPSSLGNITRLIHLDLSFNKLS 235
               + +P  L  L  +  ++++              +  +      ++  + + +N L 
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 236 D-ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLT 294
              + T +  +  L  L+ L N L G    + G+   L  ++L+ N+      +  G   
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 295 QLHWLSLASNDFSGELPASF--GNLRSLRTLDVYECKFSG-------QIPSSLSNLTHLS 345
           Q+  LS A N     +P  F   ++  +  +D    +           +  +     ++S
Sbjct: 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 346 FLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL 405
            ++ S N  S              L  + L  N L+                  +    L
Sbjct: 437 SINLSNNQISK--FPKELFSTGSPLSSINLMGNMLT-----------------EIPKNSL 477

Query: 406 TEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVN 465
            +  +  KN + L  +DL  NK+   +       ++     ++LS+N  +          
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK--------- 527

Query: 466 YLVSNNSLTGEIPSWICNLSN-----RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQH 520
                       P+   N S           D   N      P+ +      L+ L +  
Sbjct: 528 -----------FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS-LTQLQIGS 575

Query: 521 NKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
           N     + + +     + V+D+ DN         +          L  ++ +DI
Sbjct: 576 NDIR-KVNEKITPN--ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  204 bits (521), Expect = 4e-56
 Identities = 61/511 (11%), Positives = 148/511 (28%), Gaps = 91/511 (17%)

Query: 276 DLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQ-- 333
           +  L+ +  +   SL +  ++  LSL     SG +P + G L  L  L +          
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 334 --IPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL-LTKATSNT 390
              P  +S             ++           +   L    ++++     + K++  T
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 391 TSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLS 450
                  +   S ++T + K +     L    + ++    +          +N  +    
Sbjct: 183 LKDTQ--IGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW--ENENSEYAQQY 238

Query: 451 HNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFS 510
                 +D   +  +  V N     ++P+++  L   ++ ++++ N              
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE-MQLINVACNRGISGEQ------- 290

Query: 511 DWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDN-LLQGRIPRSLANCSNLEFLDLGDN 569
                      K       +   G  +++I +  N L    +  SL     L  L+   N
Sbjct: 291 ----------LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 570 QIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMA 629
           Q+    P+  G+   L  L L  N+   +           ++  +  + N+    +P++ 
Sbjct: 341 QLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFT--EQVENLSFAHNKLKY-IPNIF 396

Query: 630 FQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSS 689
                                            S+++               ++A+  S 
Sbjct: 397 DAK------------------------------SVSV---------------MSAIDFSY 411

Query: 690 NRFDG-------EIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSG 742
           N            +  +      +  ++L++N +           + L S++L  N  + 
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

Query: 743 -------QIPQQLVELTFLEFFNVSDNHFTG 766
                     +       L   ++  N  T 
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  154 bits (390), Expect = 4e-39
 Identities = 50/482 (10%), Positives = 119/482 (24%), Gaps = 132/482 (27%)

Query: 298 WLSLASNDFSGELP-ASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG 356
           W      D  G  P  S  +   +  L +     SG++P ++  LT L  L    +    
Sbjct: 60  WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV 119

Query: 357 KMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQH 416
                                                          +    PK +    
Sbjct: 120 N----------------------------------------------ERLFGPKGISANM 133

Query: 417 HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGE 476
             E                            +L  + +              +++     
Sbjct: 134 SDEQKQKMRMHYQKTFV-----DYDPREDFSDLIKDCI--------------NSDPQQKS 174

Query: 477 IPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI 536
           I             +    NN++ +  + +   +  L    + ++ F             
Sbjct: 175 IKKSSRITLK-DTQIGQLSNNITFV-SKAVMRLTK-LRQFYMGNSPFVAENI-----CEA 226

Query: 537 LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
            +  +               N  +L  +++ +       P++L  LP++ ++ +  N+  
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 597 GLIREPKTDCGFP------KLRIIDLSKNRFT-GKLPSMAFQCWNAMKVVNASELRYMQE 649
              +               K++II +  N      + +   +           +L  ++ 
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM---------KKLGMLE- 336

Query: 650 VIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQIL 709
                                                   N+ +G++P +  +   L  L
Sbjct: 337 -------------------------------------CLYNQLEGKLP-AFGSEIKLASL 358

Query: 710 SLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQ--QLVELTFLEFFNVSDNHFTGP 767
           +LA N +     +  G    +E+L  ++N+    IP       ++ +   + S N     
Sbjct: 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 768 IP 769
             
Sbjct: 418 DG 419

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 3e-09
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 688 SSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQ---- 743
             + +  +   S+++   +  LSL      G +P  +G LT+LE L L ++         
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 744 IPQQLVELTFLEFFNVSDNHFTGPIPQG 771
            P+ +      E       H+       
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDY 152

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  271 bits (696), Expect = 2e-80
 Identities = 127/670 (18%), Positives = 208/670 (31%), Gaps = 138/670 (20%)

Query: 109 SEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168
            +IP  +    S   L+LS                +L  LDLS                 
Sbjct: 20  YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-------------- 63

Query: 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLD 228
                            I +        LS L+TL L+G  ++     +   ++ L  L 
Sbjct: 64  -----------------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 229 LSFNKLSDELPTFIGTLGSLKELDLLQNNL-SGELPNSIGNLASLEQVDLSLNRFLGKVP 287
                L+      IG L +LKEL++  N + S +LP    NL +LE +DLS N+      
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 288 SSLGNLTQLHW----LSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPS-SLSNLT 342
           + L  L Q+      L L+ N  +   P +F  +R L  L +     S  +    +  L 
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 343 HLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLC 401
            L      L  F  + +L+ F  +  + L +L +   RL+ L     +            
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD------------ 273

Query: 402 SCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHP 461
                 I        ++    L S  I               + HL L +     F    
Sbjct: 274 ------IIDLFNCLTNVSSFSLVSVTIERVKD----FSYNFGWQHLELVNCKFGQFPTLK 323

Query: 462 NTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHN 521
                 ++  S  G       +L + LE LDLS N LS                      
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPS-LEFLDLSRNGLS---------------------- 360

Query: 522 KFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP-SWLG 580
            F G    +      LK +DLS N +   +  +      LE LD   + ++ +   S   
Sbjct: 361 -FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 581 TLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVN 640
           +L +L  L +                G   L ++ ++ N F        F     +  ++
Sbjct: 419 SLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 641 ASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSI 700
                                                         LS  + +   PT+ 
Sbjct: 477 ----------------------------------------------LSQCQLEQLSPTAF 490

Query: 701 SNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVEL-TFLEFFNV 759
           ++L  LQ+L+++ N+           L  L+ LD S N       Q+L    + L F N+
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 760 SDNHFTGPIP 769
           + N F     
Sbjct: 551 TQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  269 bits (690), Expect = 1e-79
 Identities = 111/560 (19%), Positives = 200/560 (35%), Gaps = 42/560 (7%)

Query: 95  HLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNS 154
             + LDL+FN            +   L  L+LS              LS L+ L L+ N 
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 155 YYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG-R 213
                 ++  +LG  +  L++L++LV  +  ++S     + +L +L  L+++   ++  +
Sbjct: 88  ------IQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK----ELDLLQNNLSGELPNSIGNL 269
           +P    N+T L HLDLS NK+     T +  L  +      LDL  N ++   P +   +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 270 ASLEQVDLSLNRFLGKVPS-SLGNLTQLHWLSLASNDFSGE---LPASFGNLRSLRTLDV 325
             L ++ L  N     V    +  L  L    L   +F  E          L  L  L +
Sbjct: 201 -RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 326 YECKFS------GQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNR 379
            E + +        I    + LT++S             D       +    HL L   +
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS----YNFGWQHLELVNCK 315

Query: 380 LSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDP 439
                           + ++  S         + +   LE LDL+ N ++ K      D 
Sbjct: 316 FGQF----PTLKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 440 SMQNFGHLNLSHNFLTGFDQHPNTVNYLV----SNNSLTGEIPSWI-CNLSNRLESLDLS 494
              +  +L+LS N +     +   +  L      +++L       +  +L N L  LD+S
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDIS 429

Query: 495 YNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI-LKVIDLSDNLLQGRIPR 553
           + +            S  L +L +  N F      ++      L  +DLS   L+   P 
Sbjct: 430 HTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 554 SLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRI 613
           +  + S+L+ L++  N    +       L  L VL    N      ++         L  
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-PSSLAF 547

Query: 614 IDLSKNRFTGKLPSMAFQCW 633
           ++L++N F       +F  W
Sbjct: 548 LNLTQNDFACTCEHQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  257 bits (659), Expect = 3e-75
 Identities = 110/589 (18%), Positives = 184/589 (31%), Gaps = 82/589 (13%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK 249
           IP NL    S   L LS   LR     S  +   L  LDLS  ++         +L  L 
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDF-SG 308
            L L  N +      +   L+SL+++              +G+L  L  L++A N   S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 309 ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN---NFSGKMDLDIFLV 365
           +LP  F NL +L  LD+   K      + L  L  +  L+ SL+   N    +    F  
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-- 197

Query: 366 NHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLAS 425
               L+ L L  N  S                       L  +   ++    LE+  L  
Sbjct: 198 KEIRLHKLTLRNNFDS-----------------------LNVMKTCIQGLAGLEVHRLVL 234

Query: 426 NKINGKVPKWLLDPS-MQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNL 484
            +   +      D S ++   +L +                 L   +    +I      L
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEE-------------FRLAYLDYYLDDIIDLFNCL 281

Query: 485 SNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSD 544
           +N + S  L    +  +              L+L + KF            +  +  L+ 
Sbjct: 282 TN-VSSFSLVSVTIERVKD--FSYNFG-WQHLELVNCKFGQ-----FPTLKLKSLKRLTF 332

Query: 545 NLLQGRIPRSLANCSNLEFLDLGDNQI--RDIFPSWLGTLPDLNVLILKSNKFHGLIREP 602
              +G    S  +  +LEFLDL  N +  +            L  L L  N    +    
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---S 389

Query: 603 KTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDY 662
               G  +L  +D   +          F     +  ++ S                 ++ 
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH----------THTRVAFNG 439

Query: 663 SLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEI-PTSISNLKGLQILSLADNSLHGHIP 721
                +             L  + ++ N F     P   + L+ L  L L+   L    P
Sbjct: 440 IFNGLSS------------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 722 SCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQ 770
           +   +L+ L+ L++S+N F          L  L+  + S NH      Q
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  184 bits (470), Expect = 1e-49
 Identities = 99/501 (19%), Positives = 160/501 (31%), Gaps = 91/501 (18%)

Query: 71  IKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAA 130
           + LDLS + +      +   FK + L  L L  N    + +   I  L+ L    L    
Sbjct: 180 LSLDLSLNPMNFIQPGA---FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 131 FSGQIPSEILE---LSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTIS 187
           F  +   E  +   L  L  L +        ++     + +L + LTN+    L  VTI 
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAY-LDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 188 SPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGS 247
                + +Y      L L  C         L ++ RL            E+      L S
Sbjct: 296 R--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-----LPS 348

Query: 248 LKELDLLQNNLS--GELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASND 305
           L+ LDL +N LS  G    S     SL+ +DLS N  +  + S+   L QL  L    ++
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 306 FSGELPAS-FGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFL 364
                  S F +LR+L  LD+             + L+ L  L  + N+F          
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-------- 459

Query: 365 VNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLA 424
                                                      +P       +L  LDL+
Sbjct: 460 -----------------------------------------NFLPDIFTELRNLTFLDLS 478

Query: 425 SNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNL 484
             ++    P      S+ +   LN+SH                   N+           L
Sbjct: 479 QCQLEQLSPTAF--NSLSSLQVLNMSH-------------------NNFFSLDTFPYKCL 517

Query: 485 SNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI--LKVIDL 542
           ++ L+ LD S N++     Q L +F   L+ L+L  N F+ T         I   + + +
Sbjct: 518 NS-LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576

Query: 543 SDNLLQGRIPRSLANCSNLEF 563
               ++   P        L  
Sbjct: 577 EVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  156 bits (397), Expect = 3e-40
 Identities = 81/512 (15%), Positives = 137/512 (26%), Gaps = 123/512 (24%)

Query: 275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI 334
                  F  K+P +L        L L+ N        SF +   L+ LD+  C+     
Sbjct: 12  YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 335 PSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHR 394
             +  +L+HLS L  + N                                          
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQS-------------------------------------- 90

Query: 395 FRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFL 454
                                  L+ L      +       +    ++    LN++HN +
Sbjct: 91  ------------LALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLI 136

Query: 455 TGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFS---D 511
             F                  ++P +  NL+N LE LDLS N +  +    L        
Sbjct: 137 QSF------------------KLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 512 WLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPR-SLANCSNLEFLDL---- 566
               LDL  N  +  I     K   L  + L +N     + +  +   + LE   L    
Sbjct: 178 LNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 567 --GDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIRE-PKTDCGFPKLRIIDLSKNRFTG 623
              +  +     S L  L +L +   +       + +          +    L       
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 624 KLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILT 683
                         V + S     Q               L + N      + + P +  
Sbjct: 297 --------------VKDFSYNFGWQ--------------HLELVN----CKFGQFPTLKL 324

Query: 684 AVI--LSSNRFDGEIPTSISNLKGLQILSLADNSLH--GHIPSCLGNLTDLESLDLSNNR 739
             +  L+     G    S  +L  L+ L L+ N L   G         T L+ LDLS N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 740 FSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG 771
               +    + L  LE  +   ++        
Sbjct: 385 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  144 bits (366), Expect = 3e-36
 Identities = 68/277 (24%), Positives = 106/277 (38%), Gaps = 15/277 (5%)

Query: 80  LQGSINSSSSLFKLVHLEWLDLAFNDFDGSE-IPPEIINLSSLSYLNLSSAAFSGQIPSE 138
                 ++ S   L  LE+LDL+ N               +SL YL+LS       + S 
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 139 ILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLS 198
            L L +L +LD  H+       L++ S  ++   L NL  L +               LS
Sbjct: 392 FLGLEQLEHLDFQHS------NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 199 SLTTLSLSGCDLRGRI-PSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN 257
           SL  L ++G   +    P     +  L  LDLS  +L    PT   +L SL+ L++  NN
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 258 LSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL-TQLHWLSLASNDFSGELPAS--F 314
                      L SL+ +D SLN  +      L +  + L +L+L  NDF+         
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 565

Query: 315 GNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSL 351
             ++  R L V   +     PS       +  L  ++
Sbjct: 566 QWIKDQRQLLVEVERMECATPSDKQG---MPVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  134 bits (340), Expect = 6e-33
 Identities = 58/257 (22%), Positives = 99/257 (38%), Gaps = 15/257 (5%)

Query: 73  LDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFS 132
           LDLS + L      S S F    L++LDL+FN      +    + L  L +L+   +   
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLK 409

Query: 133 GQIPSEIL-ELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP 191
                 +   L  L YLD+SH         R    G   + L++L+ L +   +      
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTH------TRVAFNGIF-NGLSSLEVLKMAGNSFQENFL 462

Query: 192 HN-LTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE 250
            +  T L +LT L LS C L    P++  +++ L  L++S N            L SL+ 
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 251 LDLLQNNLSGELPNSIGNLA-SLEQVDLSLNRFLGKVPSS--LGNLTQLHWLSLASNDFS 307
           LD   N++       + +   SL  ++L+ N F         L  +     L +      
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

Query: 308 GELPASFGNLRSLRTLD 324
              P+    +  + +L+
Sbjct: 583 CATPSDKQGM-PVLSLN 598

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  261 bits (668), Expect = 2e-74
 Identities = 102/640 (15%), Positives = 207/640 (32%), Gaps = 74/640 (11%)

Query: 9   DERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWD---GVQCNE 65
            +  AL    E+L   + K      G I     + +W      N +   W    GV  + 
Sbjct: 269 KDYKALKAIWEAL---DGKNWRYYSGTINNTIHSLNWNF----NKELDMWGDQPGVDLDN 321

Query: 66  NTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLN 125
           N G V  L L+    +G +    ++ +L  L+ L    +    S        L+      
Sbjct: 322 N-GRVTGLSLAGFGAKGRV--PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 126 LSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLA-DKLTNLKELVLGDV 184
                        +    +L   DL  ++       R P +  +  D   +LK+  +G++
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAI-----NRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 185 T-ISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIG 243
           T   + I   +  L+ L  +  +         +           +  + K  +       
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWS 488

Query: 244 TLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRF---------LGKVPSSLGNLT 294
            L  L +++L       +LP+ + +L  L+ ++++ NR            ++        
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 295 QLHWLSLASNDFSGELPAS--FGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352
           ++    +  N+   E PAS     +  L  LD    K       +      L+ L    N
Sbjct: 549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYN 605

Query: 353 NFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412
                +  D      ++   L  S N+L  +    +  + +   +V      +    + +
Sbjct: 606 QIEE-IPEDFCAFTDQVEG-LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 413 ------KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNY 466
                     +   + L+ N+I     +            + LS+N +T           
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFAT--GSPISTIILSNNLMTSI--------- 712

Query: 467 LVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGT 526
                +          N    L ++DL +N L+ L          +LS +D+ +N FS +
Sbjct: 713 ---PENSLKPKDGNYKNTYL-LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-S 767

Query: 527 IPDNLLKGNILKVIDLSDNL------LQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLG 580
            P   L  + LK   +          +  + P  +  C +L  L +G N IR +      
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK--- 824

Query: 581 TLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNR 620
             P L +L +  N    +  +  + C + +  +  L  ++
Sbjct: 825 LTPQLYILDIADNPNISI--DVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  247 bits (632), Expect = 2e-69
 Identities = 104/674 (15%), Positives = 190/674 (28%), Gaps = 135/674 (20%)

Query: 83  SINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILEL 142
              S +    +  L W      D  G +   ++ N   ++ L+L+     G++P  I +L
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL 346

Query: 143 SKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTT 202
           ++L  L    +S                ++LT                   L Y   L  
Sbjct: 347 TELKVLSFGTHS------ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 203 LSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGEL 262
             L    +       +  I +   + L   ++                      N    +
Sbjct: 401 SDLLQDAINRN--PEMKPIKKDSRISLKDTQI------------------GNLTNRITFI 440

Query: 263 PNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRT 322
             +I  L  L+ +  + + F     +           +            S+ NL+ L  
Sbjct: 441 SKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 323 LDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL 382
           +++Y C    Q+P  L +L  L  L+ + N                              
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-------------------------- 529

Query: 383 LTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQ 442
                           +    D T +         +++  +  N +    P       M 
Sbjct: 530 ---------------AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMV 573

Query: 443 NFGHLNLSHNFLTGFDQHPNTVN--YL-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLS 499
             G L+  HN +   +     V    L +  N +  EIP   C  ++++E L  S+N L 
Sbjct: 574 KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 500 GLLPQCLGNFSDWLSILDLQHNKFSGTIPD-----NLLKGNILKVIDLSDNLLQGRIPRS 554
            +           +  +D  +NK      +     +  KG     + LS N +Q      
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 555 LANCSNLEFLDLGDNQIRDI-------FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCG 607
            A  S +  + L +N +  I                 L  + L+ NK   L  +      
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD-FRATT 751

Query: 608 FPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMS 667
            P L  +D+S N F+   P+              S+L+                      
Sbjct: 752 LPYLSNMDVSYNCFSS-FPTQPLNS---------SQLKAF-------------------- 781

Query: 668 NKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNL 727
                        I        NR   + PT I+    L  L +  N +   +   L   
Sbjct: 782 ------------GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--T 826

Query: 728 TDLESLDLSNNRFS 741
             L  LD+++N   
Sbjct: 827 PQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  200 bits (511), Expect = 1e-53
 Identities = 89/620 (14%), Positives = 163/620 (26%), Gaps = 117/620 (18%)

Query: 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN 232
           L  + E + G          N T  S     +        +    L N  R+  L L+  
Sbjct: 274 LKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333

Query: 233 KLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPS-SLG 291
                +P  IG L  LK L    ++ +           + +  +   +R         L 
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 292 NLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG------QIPSSLSNLTHLS 345
              +L+   L  +  +         ++    + + + +          I  ++  LT L 
Sbjct: 394 YDQRLNLSDLLQDAINRNP--EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ 451

Query: 346 FLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL 405
            + F+ + F+                       +                          
Sbjct: 452 IIYFANSPFTY-------DNIAVDWEDANSDYAKQ------------------------Y 480

Query: 406 TEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVN 465
                   N   L  ++L +     ++P +L    +     LN++ N      Q      
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFL--YDLPELQSLNIACNRGISAAQLKADWT 538

Query: 466 YLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGL-LPQCLGNFSDWLSILDLQHNKFS 524
                      +          ++   + YNNL        L      L +LD  HNK  
Sbjct: 539 ----------RLADDEDTGPK-IQIFYMGYNNLEEFPASASLQKMVK-LGLLDCVHNKVR 586

Query: 525 GTIPD--NLLKGNILKVIDLSDNLLQGRIPRSL-ANCSNLEFLDLGDNQIRDIFPSW-LG 580
             +      +K   L  + L  N ++  IP    A    +E L    N+++ I   +   
Sbjct: 587 -HLEAFGTNVK---LTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641

Query: 581 TLPDLNVLILKSNKFHGLIRE---PKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMK 637
           ++  +  +    NK     R       D        + LS N      P+  F       
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFA------ 694

Query: 638 VVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIP 697
               S +  +                         +S   +  I                
Sbjct: 695 --TGSPISTII------------------------LSNNLMTSI-------PENSLKPKD 721

Query: 698 TSISNLKGLQILSLADNSLHGHIPS--CLGNLTDLESLDLSNNRFSGQIPQQLVELTFLE 755
            +  N   L  + L  N L   +        L  L ++D+S N FS   P Q +  + L+
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLK 779

Query: 756 FFN------VSDNHFTGPIP 769
            F          N      P
Sbjct: 780 AFGIRHQRDAEGNRILRQWP 799

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  141 bits (358), Expect = 1e-34
 Identities = 49/369 (13%), Positives = 104/369 (28%), Gaps = 48/369 (13%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF 131
           +   ++         +        ++   + +N+ +       +  +  L  L+      
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

Query: 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRK--PSLGNLADKLTNLKELVLGDVTISS- 188
                       KL  L L +N       + +              ++ L      +   
Sbjct: 586 R--HLEAFGTNVKLTDLKLDYNQ------IEEIPEDFCAF---TDQVEGLGFSHNKLKYI 634

Query: 189 PIPHNLTYLSSLTTLSLSGCDLRG---RIPSSLG--NITRLIHLDLSFNKLSDELPTFIG 243
           P   N   +  + ++  S   +      I  S+          + LS+N++         
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 244 TLGSLKELDLLQNNLS-------GELPNSIGNLASLEQVDLSLNRFLGKVPSSL--GNLT 294
           T   +  + L  N ++            +  N   L  +DL  N+ L  +        L 
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLP 753

Query: 295 QLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC------KFSGQIPSSLSNLTHLSFLD 348
            L  + ++ N FS   P    N   L+   +         +   Q P+ ++    L  L 
Sbjct: 754 YLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

Query: 349 FSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRL------SLLTKATSNTTSHRFRAVSL-C 401
              N+   K+D  +       LY L ++ N        S+     +      +       
Sbjct: 813 IGSNDIR-KVDEKLT----PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867

Query: 402 SCDLTEIPK 410
            CD   I +
Sbjct: 868 GCDALGIER 876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (299), Expect = 1e-27
 Identities = 41/316 (12%), Positives = 87/316 (27%), Gaps = 72/316 (22%)

Query: 475 GEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG 534
           G+ P    + + R+  L L+     G +P  +G  ++ L +L    +  + +      + 
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTE-LKVLSFGTHSETVSGRLFGDEE 370

Query: 535 NILKVIDLSDNLLQGRIPR-SLANCSNLEFLDLGDNQIRDI-----FPSWLGTLPDLNVL 588
               + +   + ++    +  L     L   DL  + I                     +
Sbjct: 371 LTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430

Query: 589 ILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQ 648
              +N+   +    K      KL+II  + + FT    ++                    
Sbjct: 431 GNLTNRITFI---SKAIQRLTKLQIIYFANSPFTYDNIAV-------------------- 467

Query: 649 EVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQI 708
                                                     +       S SNLK L  
Sbjct: 468 --------------------------------DWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 709 LSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSG---------QIPQQLVELTFLEFFNV 759
           + L +      +P  L +L +L+SL+++ NR            ++         ++ F +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 760 SDNHFTGPIPQGKQFA 775
             N+     P      
Sbjct: 556 GYNNLEE-FPASASLQ 570

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  249 bits (639), Expect = 2e-72
 Identities = 108/585 (18%), Positives = 192/585 (32%), Gaps = 58/585 (9%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK 249
           IP  L   +S   L  S   L     ++   +  L  LDL+  ++         +   L 
Sbjct: 27  IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84

Query: 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE 309
            L L  N L      ++    +L+ +              L N   L  L L SN  S  
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 310 LPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN-NFSGKMDLDIFLVNHK 368
                     L+ LD             +S+L   + L  +LN N    ++   F  +  
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSA 202

Query: 369 LLYHLFLSTNRLSLLT-KATSNTTSHRFRAVSLCSCDLTEIPKFLKN---QHHLELLDLA 424
           +   L     +  L+  K   N+T       +    D  +I   +     +  +E ++L 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 425 SNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNL 484
            +                    L+L+   L+                    E+PS +  L
Sbjct: 263 KHYFFNISSNTF--HCFSGLQELDLTATHLS--------------------ELPSGLVGL 300

Query: 485 SNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI-LKVIDLS 543
           S  L+ L LS N    L      NF   L+ L ++ N     +    L+    L+ +DLS
Sbjct: 301 ST-LKKLVLSANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 544 DNLLQ--GRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIRE 601
            + ++        L N S+L+ L+L  N+   +        P L +L L   +       
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-A 417

Query: 602 PKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYD 661
                    L++++LS +          F    A++ +N               GN    
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQ-------------GNHFPK 463

Query: 662 YSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIP 721
            ++  +N  Q +        L  ++LS          + ++LK +  + L+ N L     
Sbjct: 464 GNIQKTNSLQTLGR------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 722 SCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTG 766
             L +L  +  L+L++N  S  +P  L  L+     N+  N    
Sbjct: 518 EALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  231 bits (590), Expect = 1e-65
 Identities = 104/587 (17%), Positives = 179/587 (30%), Gaps = 74/587 (12%)

Query: 187 SSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLG 246
           ++             T +     L   IP +L N T    L+ SFN L     T    L 
Sbjct: 1   TTSSDQKCIEKEVNKTYNCENLGLN-EIPGTLPNSTE--CLEFSFNVLPTIQNTTFSRLI 57

Query: 247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDF 306
           +L  LDL +  +     ++  +   L+ + L+ N  +    ++L     L  L       
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

Query: 307 SGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVN 366
           S        N ++L +L +     S            L  LDF  N        D+  + 
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 367 HKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASN 426
                 L L+ N +                           I     +    + L+    
Sbjct: 178 QATNLSLNLNGNDI-------------------------AGIEPGAFDSAVFQSLNFGGT 212

Query: 427 KINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSN 486
           +    + K L + ++Q+                          +  ++  +   +C +S 
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDM----------------DDEDISPAVFEGLCEMS- 255

Query: 487 RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNL 546
            +ES++L  +    +       FS  L  LDL     S  +P  L+  + LK + LS N 
Sbjct: 256 -VESINLQKHYFFNISSNTFHCFSG-LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312

Query: 547 LQGRIPRSLANCSNLEFLDLGDNQIR-DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTD 605
            +     S +N  +L  L +  N  R ++    L  L +L  L L  +            
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 606 CGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLT 665
                L+ ++LS N     L + AF+    +++++ +          F         S  
Sbjct: 373 RNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLA----------FTRLKVKDAQSPF 421

Query: 666 MSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSC-- 723
            +              L  + LS +  D         L  LQ L+L  N           
Sbjct: 422 QNLHL-----------LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 724 -LGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIP 769
            L  L  LE L LS    S         L  +   ++S N  T    
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  229 bits (585), Expect = 6e-65
 Identities = 103/566 (18%), Positives = 177/566 (31%), Gaps = 62/566 (10%)

Query: 95  HLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHN 153
             E L+ +FN      I       L +L++L+L+                +L  L L+ N
Sbjct: 34  STECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 154 SYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGR 213
                  L   +   L+     LK L      ISS     L    +L +L L    +   
Sbjct: 92  P------LIFMAETALSG-PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDL-LQNNLSGELPNSIGNLASL 272
                    +L  LD   N +       + +L     L L L  N    +     + A  
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 273 EQVDLSLNRFLGKVPSSLGN--LTQLHWLSLASNDFSGELPASFGNLR--SLRTLDVYEC 328
           + ++    + L  +   L N  +  L   +    D     PA F  L   S+ ++++ + 
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 329 KFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATS 388
            F     ++    + L  LD +  + S   +L   LV    L  L LS N+   L     
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLS---ELPSGLVGLSTLKKLVLSANKFENL----- 316

Query: 389 NTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLN 448
                                    N   L  L +  N    ++    L+ +++N   L+
Sbjct: 317 -------------------CQISASNFPSLTHLSIKGNTKRLELGTGCLE-NLENLRELD 356

Query: 449 LSHNFLTGFDQHPNTVNYLV-------SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGL 501
           LSH+ +   D     +  L        S N                LE LDL++  L   
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTRLKVK 415

Query: 502 LPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRI---PRSLANC 558
             Q        L +L+L H+    +          L+ ++L  N           SL   
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 559 SNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLR--IIDL 616
             LE L L    +  I      +L  +N + L  N+      E         L+   ++L
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA-----LSHLKGIYLNL 530

Query: 617 SKNRFTGKLPSMAFQCWNAMKVVNAS 642
           + N  +  +        +  + +N  
Sbjct: 531 ASNHISI-ILPSLLPILSQQRTINLR 555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  224 bits (574), Expect = 2e-63
 Identities = 102/540 (18%), Positives = 174/540 (32%), Gaps = 55/540 (10%)

Query: 73  LDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAAF 131
           LDL+   +      +        L+ L L  N      +    +    +L +L       
Sbjct: 62  LDLTRCQIYWIHEDT--FQSQHRLDTLVLTANPL--IFMAETALSGPKALKHLFFIQTGI 117

Query: 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP 191
           S      +     L  L L  N       ++ P           LK L   +  I     
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHI---SSIKLPKGFP----TEKLKVLDFQNNAIHYLSK 170

Query: 192 HNLTYLSSLT--TLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIG--TLGS 247
            +++ L   T  +L+L+G D+ G I     +      L+    +    +   +   T+ S
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 248 LKELDLLQNNLSGELPNSIGNLA--SLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASND 305
           L        +     P     L   S+E ++L  + F     ++    + L  L L +  
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 306 FSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLV 365
            S ELP+    L +L+ L +   KF      S SN   L+ L    N    ++       
Sbjct: 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 366 NHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLAS 425
              L   L LS + +                               L+N  HL+ L+L+ 
Sbjct: 349 LENLRE-LDLSHDDIE----------------------TSDCCNLQLRNLSHLQSLNLSY 385

Query: 426 NKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFD-----QHPNTVNYL-VSNNSLTGEIPS 479
           N+      +            L+L+   L   D     Q+ + +  L +S++ L      
Sbjct: 386 NEPLSLKTEAFK--ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 480 WICNLSNRLESLDLSYNNLSGLLPQCLGNFSDW--LSILDLQHNKFSGTIPDNLLKGNIL 537
               L   L+ L+L  N+      Q   +      L IL L     S           ++
Sbjct: 444 LFDGLPA-LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502

Query: 538 KVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHG 597
             +DLS N L      +L++   + +L+L  N I  I PS L  L     + L+ N    
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (399), Expect = 2e-40
 Identities = 87/531 (16%), Positives = 152/531 (28%), Gaps = 134/531 (25%)

Query: 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSG 308
           K  +     L+ E+P ++    S E ++ S N       ++   L  L +L L       
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 309 ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHK 368
               +F +   L TL +          ++LS    L                        
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK----------------------- 108

Query: 369 LLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKI 428
              HLF     +S +                            L NQ  LE L L SN I
Sbjct: 109 ---HLFFIQTGISSI------------------------DFIPLHNQKTLESLYLGSNHI 141

Query: 429 NGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSN-R 487
           +            +    L+  +N +                          + +L    
Sbjct: 142 SSIKLPKGF--PTEKLKVLDFQNNAIHYL-------------------SKEDMSSLQQAT 180

Query: 488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI--LKVIDLSDN 545
             SL+L+ N+++G+ P    +       L+    +    I   L    I  L +    D 
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAV--FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 546 LLQGRIPRSLANCS--NLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPK 603
             +   P         ++E ++L  +   +I  +       L  L L +     L   P 
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL---PS 295

Query: 604 TDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYS 663
              G   L+ + LS N+F   L  ++          N   L ++                
Sbjct: 296 GLVGLSTLKKLVLSANKFEN-LCQISAS--------NFPSLTHLS--------------- 331

Query: 664 LTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPT-SISNLKGLQILSLADNSLH--GHI 720
                                  +  N    E+ T  + NL+ L+ L L+ + +      
Sbjct: 332 -----------------------IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 721 PSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG 771
              L NL+ L+SL+LS N       +   E   LE  +++         Q 
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  154 bits (391), Expect = 2e-39
 Identities = 79/354 (22%), Positives = 137/354 (38%), Gaps = 38/354 (10%)

Query: 69  HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSS 128
            V  ++L          SS++      L+ LDL       SE+P  ++ LS+L  L LS+
Sbjct: 255 SVESINLQKHYFFNI--SSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSA 310

Query: 129 AAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGD--VTI 186
             F             L +L +  N+    +EL    L N    L NL+EL L    +  
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKR--LELGTGCLEN----LENLRELDLSHDDIET 364

Query: 187 SSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD-ELPTFIGTL 245
           S      L  LS L +L+LS  +       +     +L  LDL+F +L   +  +    L
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 246 GSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLG---KVPSSLGNLTQLHWLSLA 302
             LK L+L  + L          L +L+ ++L  N F     +  +SL  L +L  L L+
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 303 SNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDI 362
             D S     +F +L+ +  +D+   + +     +LS+L  + +L+ + N+ S  +   +
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI-ILPSL 542

Query: 363 FLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQH 416
             +  +    + L  N L                    C+C      ++ K   
Sbjct: 543 LPILSQQRT-INLRQNPLD-------------------CTCSNIYFLEWYKENM 576

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  154 bits (391), Expect = 2e-39
 Identities = 83/435 (19%), Positives = 132/435 (30%), Gaps = 85/435 (19%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDG-SEIPPEIINLSSLSYLNLSSAA 130
            L+   +     I        +  L        D +  S    E +   S+  +NL    
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 131 FSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPI 190
           F     +     S L  LDL+                                  +S  +
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATH-------------------------------LSE-L 293

Query: 191 PHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPT-FIGTLGSLK 249
           P  L  LS+L  L LS          S  N   L HL +  N    EL T  +  L +L+
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 250 ELDLLQNNL--SGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS 307
           ELDL  +++  S      + NL+ L+ ++LS N  L     +     QL  L LA     
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

Query: 308 G-ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDI-FLV 365
             +  + F NL  L+ L++               L  L  L+   N+F          L 
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

Query: 366 NHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLAS 425
               L  L LS   LS +                              +   +  +DL+ 
Sbjct: 474 TLGRLEILVLSFCDLSSI------------------------DQHAFTSLKMMNHVDLSH 509

Query: 426 NKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLS 485
           N++                 HL   +  L              ++N ++  +PS +  LS
Sbjct: 510 NRLTS------SSIEA--LSHLKGIYLNL--------------ASNHISIILPSLLPILS 547

Query: 486 NRLESLDLSYNNLSG 500
               +++L  N L  
Sbjct: 548 Q-QRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  134 bits (339), Expect = 7e-33
 Identities = 62/391 (15%), Positives = 116/391 (29%), Gaps = 43/391 (10%)

Query: 396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT 455
           +  +  +  L EIP  L N    E L+ + N +   +        + N   L+L+   + 
Sbjct: 15  KTYNCENLGLNEIPGTLPN--STECLEFSFNVLPT-IQNTTF-SRLINLTFLDLTRCQIY 70

Query: 456 G-----FDQHPNTVNYLV-SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNF 509
                 F      ++ LV + N L     + +      L+ L      +S +    L N 
Sbjct: 71  WIHEDTFQSQHR-LDTLVLTANPLIFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQ 128

Query: 510 SDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLE--FLDLG 567
              L  L L  N  S            LKV+D  +N +       +++        L+L 
Sbjct: 129 KT-LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 568 DNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPS 627
            N I  I             L     +   +I +   +     L +           +  
Sbjct: 188 GNDIAGI-EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISP 245

Query: 628 MAFQ--CWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAV 685
             F+  C  +++ +N             +    I   +    +             L  +
Sbjct: 246 AVFEGLCEMSVESINLQ----------KHYFFNISSNTFHCFSG------------LQEL 283

Query: 686 ILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQI- 744
            L++     E+P+ +  L  L+ L L+ N           N   L  L +  N    ++ 
Sbjct: 284 DLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 745 PQQLVELTFLEFFNVSDNHFTGPIPQGKQFA 775
              L  L  L   ++S +          Q  
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  110 bits (277), Expect = 3e-25
 Identities = 60/299 (20%), Positives = 106/299 (35%), Gaps = 52/299 (17%)

Query: 65  ENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII-NLSSLSY 123
           EN  ++ +LDLS   ++ S   +  L  L HL+ L+L++N+     +  E       L  
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP--LSLKTEAFKECPQLEL 404

Query: 124 LNLSSAAFSGQIPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLG 182
           L+L+      +      + L  L  L+LSH+                             
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL---------------------------- 436

Query: 183 DVTISSPIPHNLTYLSSLTTLSLSGCDLRGRI---PSSLGNITRLIHLDLSFNKLSDELP 239
              +          L +L  L+L G           +SL  + RL  L LSF  LS    
Sbjct: 437 ---LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

Query: 240 TFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWL 299
               +L  +  +DL  N L+     ++ +L  +  ++L+ N     +PS L  L+Q   +
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552

Query: 300 SLASNDFSGELPASF------GNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352
           +L  N         +       N++ L   +   C        +   L  +   D +L+
Sbjct: 553 NLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLC-------ENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 95.1 bits (237), Expect = 3e-20
 Identities = 39/265 (14%), Positives = 79/265 (29%), Gaps = 55/265 (20%)

Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
             + ++   +  IP  L      + ++ S N+L      + +   NL FLDL   QI  I
Sbjct: 16  TYNCENLGLN-EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 575 FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWN 634
                 +   L+ L+L +N    +        G   L+ +   +   +  +  +      
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMA--ETALSGPKALKHLFFIQTGISS-IDFIPLHNQK 129

Query: 635 AMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDG 694
            ++ +                                               L SN    
Sbjct: 130 TLESLY----------------------------------------------LGSNHISS 143

Query: 695 EIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLE--SLDLSNNRFSGQIPQQLVELT 752
                    + L++L   +N++H      + +L      SL+L+ N  +G I     +  
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSA 202

Query: 753 FLEFFNVSDNHFTGPIPQGKQFATF 777
             +  N         I +G + +T 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTI 227

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  237 bits (607), Expect = 2e-71
 Identities = 93/355 (26%), Positives = 150/355 (42%), Gaps = 60/355 (16%)

Query: 5   LCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCC--SWDGVQ 62
           LC+  ++ ALLQ K+ L                     +SW P      DCC  +W GV 
Sbjct: 2   LCNPQDKQALLQIKKDLGN---------------PTTLSSWLP----TTDCCNRTWLGVL 42

Query: 63  CNE--NTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLA-FNDFDGSEIPPEIINLS 119
           C+    T  V  LDLS   L       SSL  L +L +L +   N+  G  IPP I  L+
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLT 101

Query: 120 SLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKEL 179
            L YL ++    SG IP  + ++  L  LD S+N+                         
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA------------------------- 136

Query: 180 VLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLI-HLDLSFNKLSDEL 238
                 +S  +P +++ L +L  ++  G  + G IP S G+ ++L   + +S N+L+ ++
Sbjct: 137 ------LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 239 PTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHW 298
           P     L +L  +DL +N L G+     G+  + +++ L+ N     +   +G    L+ 
Sbjct: 191 PPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 299 LSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNN 353
           L L +N   G LP     L+ L +L+V      G+IP    NL       ++ N 
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  229 bits (586), Expect = 3e-68
 Identities = 91/331 (27%), Positives = 130/331 (39%), Gaps = 57/331 (17%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSG--LLPQCLGNFSDWLSILDLQH-NKFSG 525
            N +  G +         R+ +LDLS  NL     +P  L N    L+ L +   N   G
Sbjct: 34  CNRTWLGVLCDTDTQTY-RVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVG 91

Query: 526 TIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDL 585
            IP  + K   L  + ++   + G IP  L+    L  LD   N +    P  + +LP+L
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 586 NVLILKSNKFHGLIREPKTDCGFPKL-RIIDLSKNRFTGKLPSMAFQCWNAMKVVNASEL 644
             +    N+  G I  P +   F KL   + +S+NR TGK+P                  
Sbjct: 152 VGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPP---------------TF 194

Query: 645 RYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLK 704
             +                                  L  V LS N  +G+      + K
Sbjct: 195 ANLN---------------------------------LAFVDLSRNMLEGDASVLFGSDK 221

Query: 705 GLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHF 764
             Q + LA NSL   +   +G   +L  LDL NNR  G +PQ L +L FL   NVS N+ 
Sbjct: 222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 765 TGPIPQGKQFATFDKTSFDGNSGLCGRPLSS 795
            G IPQG     FD +++  N  LCG PL +
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  209 bits (535), Expect = 3e-61
 Identities = 81/342 (23%), Positives = 127/342 (37%), Gaps = 57/342 (16%)

Query: 192 HNLTYLSS-LTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLS--DELPTFIGTLGSL 248
            N T LSS L T         G +  +     R+ +LDLS   L     +P+ +  L  L
Sbjct: 19  GNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78

Query: 249 KELDLL-QNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS 307
             L +   NNL G +P +I  L  L  + ++     G +P  L  +  L  L  + N  S
Sbjct: 79  NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 308 GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLS-FLDFSLNNFSGKMDLDIFLVN 366
           G LP S  +L +L  +     + SG IP S  + + L   +  S N  +GK+      +N
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 367 HKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASN 426
              L  + LS N L                          +      +  + + + LA N
Sbjct: 199 ---LAFVDLSRNMLE------------------------GDASVLFGSDKNTQKIHLAKN 231

Query: 427 KINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSN 486
            +   + K       +N   L+L +                   N + G +P  +  L  
Sbjct: 232 SLAFDLGKVG---LSKNLNGLDLRN-------------------NRIYGTLPQGLTQLKF 269

Query: 487 RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
            L SL++S+NNL G +PQ  GN      +    +NK     P
Sbjct: 270 -LHSLNVSFNNLCGEIPQ-GGNLQR-FDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  191 bits (487), Expect = 1e-54
 Identities = 76/376 (20%), Positives = 126/376 (33%), Gaps = 86/376 (22%)

Query: 261 ELPNSIGNLASL----EQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE--LPASF 314
           ++   +GN  +L       D     +LG +  +     +++ L L+  +      +P+S 
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 315 GNLRSLRTLDVY-ECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHL 373
            NL  L  L +       G IP +++ LT L +L  +  N SG                 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG----------------- 115

Query: 374 FLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVP 433
                                             IP FL     L  LD + N ++G +P
Sbjct: 116 ---------------------------------AIPDFLSQIKTLVTLDFSYNALSGTLP 142

Query: 434 KWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDL 493
             +   S+ N   +                       N ++G IP    + S    S+ +
Sbjct: 143 PSI--SSLPNLVGITFD-------------------GNRISGAIPDSYGSFSKLFTSMTI 181

Query: 494 SYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPR 553
           S N L+G +P    N +  L+ +DL  N   G            + I L+ N L   +  
Sbjct: 182 SRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG- 238

Query: 554 SLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRI 613
            +    NL  LDL +N+I    P  L  L  L+ L +  N   G I  P       +  +
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--P-QGGNLQRFDV 295

Query: 614 IDLSKNRFT--GKLPS 627
              + N+      LP+
Sbjct: 296 SAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  111 bits (279), Expect = 9e-27
 Identities = 41/226 (18%), Positives = 65/226 (28%), Gaps = 53/226 (23%)

Query: 551 IPRSLANCSNL----EFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDC 606
           I + L N + L       D  +     +          +N L L           P +  
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 607 GFPKLRIIDLSK-NRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLT 665
             P L  + +   N   G +P    +                                  
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQ------------------------------- 102

Query: 666 MSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG 725
                           L  + ++     G IP  +S +K L  L  + N+L G +P  + 
Sbjct: 103 ----------------LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

Query: 726 NLTDLESLDLSNNRFSGQIPQQLVELTFL-EFFNVSDNHFTGPIPQ 770
           +L +L  +    NR SG IP      + L     +S N  TG IP 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  227 bits (580), Expect = 3e-64
 Identities = 100/548 (18%), Positives = 185/548 (33%), Gaps = 42/548 (7%)

Query: 95  HLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHN 153
             + +DL+FN      +      N S L +L+LS              L  L+ L L+ N
Sbjct: 33  STKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 154 SYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG- 212
                  ++  S G+ +  LT+L+ LV  +  ++S     +  L +L  L+++   +   
Sbjct: 91  P------IQSFSPGSFSG-LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 213 RIPSSLGNITRLIHLDLSFNKLS----DELPTFIGTLGSLKELDLLQNNLSGELPNSIGN 268
           ++P+   N+T L+H+DLS+N +     ++L            LD+  N +   + +    
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ 202

Query: 269 LASLEQVDLSLNRFLGKVPS-SLGNLTQLHWLSLASNDFSGEL------PASFGNLRSLR 321
              L ++ L  N     +    L NL  LH   L   +F  E       P+    L  + 
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 322 T--LDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNR 379
                +               L ++S +  +  +     D    +  H     L +   +
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED----VPKHFKWQSLSIIRCQ 318

Query: 380 LSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDP 439
           L               ++++L     +   K +     L  LDL+ N ++        D 
Sbjct: 319 LKQF----PTLDLPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 440 SMQNFGHLNLSHNFLTGFDQHPNTVNYLV----SNNSLTGEIPSWICNLSNRLESLDLSY 495
              +  HL+LS N       +   +  L      +++L             +L  LD+SY
Sbjct: 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 496 NNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI-LKVIDLSDNLLQGRIPRS 554
            N            +  L+ L +  N F      N+      L  +DLS   L+      
Sbjct: 434 TNTKIDFDGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 555 LANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRII 614
                 L+ L++  N +  +  S    L  L+ L    N+                L   
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK--GILQHFPKSLAFF 550

Query: 615 DLSKNRFT 622
           +L+ N   
Sbjct: 551 NLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  226 bits (577), Expect = 6e-64
 Identities = 101/584 (17%), Positives = 178/584 (30%), Gaps = 73/584 (12%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
           ++ K + L    +     ++ +  S L  L LS C++      +   +  L +L L+ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 234 LSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLG-KVPSSLGN 292
           +    P     L SL+ L  ++  L+      IG L +L++++++ N     K+P+   N
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 293 LTQLHWLSLASNDFSGELPASFGNLRSLR----TLDVYECKFSGQIPSSLSNLTHLSFLD 348
           LT L  + L+ N            LR       +LD+        I         L  L 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELT 210

Query: 349 FSLNNFSGKMDLDIF-----LVNHKLLYHLFLSTNRLSLLTKAT-SNTTSHRFRAVSLCS 402
              N  S  +          L  H+L+   F     L +   +              L  
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 403 CDLTEI-PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG--FDQ 459
            +             ++  + LA   I          P    +  L++    L       
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLED----VPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 460 HPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFS-DWLSILDL 518
            P   +  ++ N  +  I      L + L  LDLS N LS        +   + L  LDL
Sbjct: 327 LPFLKSLTLTMNKGS--ISFKKVALPS-LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 519 QHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRS-LANCSNLEFLDLGDNQIRDIFPS 577
             N     +  N +    L+ +D   + L+     S   +   L +LD+     +  F  
Sbjct: 384 SFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 578 WLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMK 637
               L  LN L +  N F               L  +DLSK +    +    F   + ++
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNT-LSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQ 500

Query: 638 VVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIP 697
           ++N                                              +S N       
Sbjct: 501 LLN----------------------------------------------MSHNNLLFLDS 514

Query: 698 TSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS 741
           +  + L  L  L  + N +             L   +L+NN  +
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  222 bits (567), Expect = 2e-62
 Identities = 101/588 (17%), Positives = 178/588 (30%), Gaps = 83/588 (14%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK 249
           +P ++   SS   + LS   L+     S  N + L  LDLS  ++          L  L 
Sbjct: 26  VPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83

Query: 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSG- 308
            L L  N +    P S   L SLE +     +        +G L  L  L++A N     
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 309 ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN---NFSGKMDLDIFLV 365
           +LPA F NL +L  +D+          + L  L     ++ SL+   N    +    F  
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 366 NHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLAS 425
               L+ L L  N  S                          +   L+N   L +  L  
Sbjct: 204 IK--LHELTLRGNFNSSNI-----------------------MKTCLQNLAGLHVHRLIL 238

Query: 426 NKINGKVPKWLLDPSM-QNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNL 484
            +   +    + +PS+ +    + +    L              +  +   +       L
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRL--------------TYTNDFSDDIVKFHCL 284

Query: 485 SNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSD 544
           +N + ++ L+  ++  L              L +   +       +L     LK + L+ 
Sbjct: 285 AN-VSAMSLAGVSIKYLED---VPKHFKWQSLSIIRCQLKQFPTLDLPF---LKSLTLTM 337

Query: 545 NLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPS--WLGTLPDLNVLILKSNKFHGLIREP 602
           N  +G I        +L +LDL  N +               L  L L  N    +    
Sbjct: 338 N--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM---S 392

Query: 603 KTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDY 662
               G  +L+ +D   +         AF     +  ++ S                 +D 
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY----------TNTKIDFDG 442

Query: 663 SLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSI-SNLKGLQILSLADNSLHGHIP 721
                              L  + ++ N F     +++ +N   L  L L+   L     
Sbjct: 443 IFLGLTS------------LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 722 SCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIP 769
                L  L+ L++S+N           +L  L   + S N       
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  211 bits (540), Expect = 7e-59
 Identities = 94/539 (17%), Positives = 164/539 (30%), Gaps = 56/539 (10%)

Query: 73  LDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAAF 131
           LDLS   ++       +   L HL  L L  N        P     L+SL  L       
Sbjct: 61  LDLSRCEIETIE--DKAWHGLHHLSNLILTGNPI--QSFSPGSFSGLTSLENLVAVETKL 116

Query: 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP 191
           +      I +L  L  L+++HN       +    L      LTNL  + L    I +   
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNF------IHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170

Query: 192 HNLTYLSSLT----TLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELP-TFIGTLG 246
           ++L +L        +L +S   +   I        +L  L L  N  S  +  T +  L 
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 229

Query: 247 SLKELDLLQNNLSGELPNSIGNLASLE--------QVDLSLNRFLGKVPSSLGNLTQLHW 298
            L    L+      E    I   + +E        +  L+              L  +  
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289

Query: 299 LSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKM 358
           +SLA                  ++L +  C+        L  L     L  ++N  S   
Sbjct: 290 MSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS---LTLTMNKGS--- 341

Query: 359 DLDIFLVNHKLLYHLFLSTNRLSLLTK-ATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHH 417
            +    V    L +L LS N LS     + S+  ++  R + L       +         
Sbjct: 342 -ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400

Query: 418 LELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEI 477
           L+ LD   + +           S++   +L++S+                          
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKID-------------------F 440

Query: 478 PSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNIL 537
                 L++ L +L ++ N+        +   +  L+ LDL   +            + L
Sbjct: 441 DGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499

Query: 538 KVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
           +++++S N L            +L  LD   N+I             L    L +N   
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (250), Expect = 8e-22
 Identities = 44/201 (21%), Positives = 72/201 (35%), Gaps = 9/201 (4%)

Query: 59  DGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINL 118
                +  T  +  LDLS +        S++   L  L+ LD   +           ++L
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAII---MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 119 SSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKE 178
             L YL++S            L L+ L  L ++ NS       +  +L N+    TNL  
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS------FKDNTLSNVFANTTNLTF 477

Query: 179 LVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDEL 238
           L L    +          L  L  L++S  +L     S    +  L  LD SFN++    
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 239 PTFIGTLGSLKELDLLQNNLS 259
                   SL   +L  N+++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  199 bits (508), Expect = 6e-55
 Identities = 110/543 (20%), Positives = 190/543 (34%), Gaps = 44/543 (8%)

Query: 109 SEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168
            +IP  +    S   L+LS                +L  LDLS         ++    G 
Sbjct: 20  YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGA 71

Query: 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLD 228
               L++L  L+L    I S      + LSSL  L     +L       +G++  L  L+
Sbjct: 72  Y-QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 229 LSFNKLSD-ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN---RFLG 284
           ++ N +   +LP +   L +L+ LDL  N +       +  L  +  ++LSL+     + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 285 KVPSSLGNLTQLHWLSLASNDFSGELPA-SFGNLRSLRTLDVYECKFSGQI------PSS 337
            +        +LH L+L +N  S  +       L  L    +   +F  +        S+
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLSTNRLSLLTKATSNTTSHRFR 396
           L  L +L+  +F L      +D  I L N    +    L +  +  +   + N       
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 397 AVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG 456
            V+        +         L+ L   SNK      +      + +   L+LS N L+ 
Sbjct: 311 LVNCKFGQFPTL-----KLKSLKRLTFTSNKGGNAFSEV----DLPSLEFLDLSRNGLSF 361

Query: 457 FDQHPNTVNYLV-------SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNF 509
                 +            S N +   + S    L   LE LD  ++NL  +    +   
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLS 419

Query: 510 SDWLSILDLQHNKFSGTIPDNLLKGNI-LKVIDLSDNLLQGRIPR-SLANCSNLEFLDLG 567
              L  LD+ H        + +  G   L+V+ ++ N  Q            NL FLDL 
Sbjct: 420 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 568 DNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPS 627
             Q+  + P+   +L  L VL + SN+   +            L+ I L  N +    P 
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSV--PDGIFDRLTSLQKIWLHTNPWDCSCPR 536

Query: 628 MAF 630
           + +
Sbjct: 537 IDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  182 bits (465), Expect = 3e-49
 Identities = 113/570 (19%), Positives = 183/570 (32%), Gaps = 78/570 (13%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK 249
           IP NL    S   L LS   LR     S  +   L  LDLS  ++         +L  L 
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDF-SG 308
            L L  N +      +   L+SL+++              +G+L  L  L++A N   S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 309 ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN---NFSGKMDLDIFLV 365
           +LP  F NL +L  LD+   K      + L  L  +  L+ SL+   N    +    F  
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-- 197

Query: 366 NHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF-------LKNQHHL 418
               L+ L L  N  SL    T            L   +              L+   +L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 419 ELLDLASNKINGKVPKWL-LDPSMQNFGHLNLSHNFLTGFDQHPNTVN--YLVSNNSLTG 475
            + +     ++  +   + L   + N    +L    +             +L   N   G
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 476 EIPSWICNLSNRLESLDLSYNNLSGLLP-QCLGNFSDWLSILDLQHNK--FSGTIPDNLL 532
           + P+        L+ L  + N          L +    L  LDL  N   F G    +  
Sbjct: 318 QFPTLKLK---SLKRLTFTSNKGGNAFSEVDLPS----LEFLDLSRNGLSFKGCCSQSDF 370

Query: 533 KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP-SWLGTLPDLNVLILK 591
               LK +DLS N +   +  +      LE LD   + ++ +   S   +L +L  L + 
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 592 SNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVI 651
                          G   L ++ ++ N F        F                     
Sbjct: 430 HTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------------- 468

Query: 652 PFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSL 711
                         + N             LT + LS  + +   PT+ ++L  LQ+L++
Sbjct: 469 --------------LRN-------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 712 ADNSLHGHIPSCLGNLTDLESLDLSNNRFS 741
           A N L          LT L+ + L  N + 
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  173 bits (440), Expect = 6e-46
 Identities = 94/501 (18%), Positives = 172/501 (34%), Gaps = 56/501 (11%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
            + K L L    +     ++      L  L LS C+++     +  +++ L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 234 LSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFL-GKVPSSLGN 292
           +          L SL++L  ++ NL+      IG+L +L++++++ N     K+P    N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 293 LTQLHWLSLASNDFSGELPASFGNLR---------------------------SLRTLDV 325
           LT L  L L+SN            L                             L  L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 326 YECKFSGQIPS-SLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLSTNRLSLL 383
                S  +    +  L  L      L  F  + +L+ F  +  + L +L +   RL+ L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 384 TKATSNTTS-----HRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLD 438
                +            + SL S  +  +  F  N    + L+L + K           
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-FGWQHLELVNCKFG-----QFPT 321

Query: 439 PSMQNFGHLNLSHNFLTG---FDQHPN-TVNYLVSNNSLT--GEIPSWICNLSNRLESLD 492
             +++   L  + N           P+     L S N L+  G         ++ L+ LD
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL-SRNGLSFKGCCSQSDFGTTS-LKYLD 379

Query: 493 LSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRI 551
           LS+N +   +          L  LD QH+        ++      L  +D+S    +   
Sbjct: 380 LSFNGVIT-MSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 552 PRSLANCSNLEFLDLGDNQIRDIFPSW-LGTLPDLNVLILKSNKFHGLIREPKTDCGFPK 610
                  S+LE L +  N  ++ F       L +L  L L   +   L   P        
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL--SPTAFNSLSS 495

Query: 611 LRIIDLSKNRFTGKLPSMAFQ 631
           L++++++ N+    +P   F 
Sbjct: 496 LQVLNMASNQLK-SVPDGIFD 515

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 4e-08
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 1/94 (1%)

Query: 682 LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS 741
           L  + LS          +  +L  L  L L  N +          L+ L+ L       +
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 742 GQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFA 775
                 +  L  L+  NV+ N         + F+
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFS 146

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 16/88 (18%), Positives = 30/88 (34%)

Query: 678 IPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSN 737
           +P     + LS N        S  +   LQ+L L+   +         +L+ L +L L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 738 NRFSGQIPQQLVELTFLEFFNVSDNHFT 765
           N            L+ L+     + +  
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA 113

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  192 bits (489), Expect = 6e-51
 Identities = 122/592 (20%), Positives = 207/592 (34%), Gaps = 68/592 (11%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELP--TFIGTLGS 247
           +P  L   ++   L LS   +R    SS   + +L  L+L        +    F   L +
Sbjct: 19  VPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-LPN 74

Query: 248 LKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKV--PSSLGNLTQLHWLSLASND 305
           L+ LDL  + +    P++   L  L ++ L        V       NL  L  L L+ N 
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 306 FSG-ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLT--HLSFLDFSLNNFSGKMDLDI 362
                L  SFG L SL+++D    +        L  L    LSF   + N+   ++ +D 
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

Query: 363 FLVNHKL----LYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHL 418
               +      L  L +S N  ++      +    + +A S            L   HH+
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS------------LILAHHI 242

Query: 419 ELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG-----FDQHPNTVNYLVSNNSL 473
                  + I           +  +  HL+LSH F+       F+   +     ++ N +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 474 TGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLK 533
                     L N L+ L+LSYN L  L           ++ +DLQ N  +  I D   K
Sbjct: 303 NKIADEAFYGLDN-LQVLNLSYNLLGELYSSNFYGLPK-VAYIDLQKNHIA-IIQDQTFK 359

Query: 534 G-NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS 592
               L+ +DL DN L      ++    ++  + L  N++  +    L      N++ L  
Sbjct: 360 FLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSE 410

Query: 593 NKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIP 652
           N+   L          P L+I+ L++NRF+            +++ +             
Sbjct: 411 NRLENL-DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG---------- 459

Query: 653 FNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLA 712
               N +     T                L  + L+ N  +   P   S+L  L+ LSL 
Sbjct: 460 ---ENMLQLAWETELCWDVFEGLSH----LQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512

Query: 713 DNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHF 764
            N L   +        +LE LD+S N+     P        L   +++ N F
Sbjct: 513 SNRLT-VLSHND-LPANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  189 bits (482), Expect = 5e-50
 Identities = 112/581 (19%), Positives = 201/581 (34%), Gaps = 50/581 (8%)

Query: 69  HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSS 128
              +L LS + ++ ++ ++SS   L  L+ L+L       +       NL +L  L+L S
Sbjct: 25  TTERLLLSFNYIR-TV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 129 AAFSGQIPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGNLA-DKLTNLKELVLGDVTI 186
           +     +  +  + L  L  L L          L    L +     L  L  L L    I
Sbjct: 83  SKIY-FLHPDAFQGLFHLFELRLYFCG------LSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 187 SS-PIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNIT--RLIHLDLSFNKL-SDELPTFI 242
            S  +  +   L+SL ++  S   +       L  +    L    L+ N L S     + 
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 243 GTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLA 302
             +   + + L   ++S       GN  +++      N        SL     +      
Sbjct: 196 KCMNPFRNMVLEILDVS-------GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

Query: 303 SNDFSGELPASFGNLR--SLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDL 360
            ++       +F  L   S+R LD+               L  L  L+ + N  + K+  
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIAD 307

Query: 361 DIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK-FLKNQHHLE 419
           + F      L  L LS N L  L  +++     +   + L    +  I     K    L+
Sbjct: 308 EAFY-GLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365

Query: 420 LLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYL-VSNNSLTG-EI 477
            LDL  N +            + +   + LS N L    +   T N + +S N L   +I
Sbjct: 366 TLDLRDNALTT-------IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418

Query: 478 PSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI- 536
             ++  + + L+ L L+ N  S        + +  L  L L  N         L      
Sbjct: 419 LYFLLRVPH-LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 537 ----LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS 592
               L+V+ L+ N L    P   ++ + L  L L  N++  +  + L    +L +L +  
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISR 535

Query: 593 NKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCW 633
           N+             F  L ++D++ N+F  +     F  W
Sbjct: 536 NQLLAP-----NPDVFVSLSVLDITHNKFICECELSTFINW 571

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  166 bits (423), Expect = 1e-42
 Identities = 103/538 (19%), Positives = 180/538 (33%), Gaps = 74/538 (13%)

Query: 73  LDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFS 132
           L L    L  ++        L  L  LDL+ N      + P    L+SL  ++ SS    
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 133 GQIPSEI---LELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSP 189
             +       L+   L++  L+ NS Y  V +      N   +   L+ L +     +  
Sbjct: 162 -LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN-PFRNMVLEILDVSGNGWTVD 219

Query: 190 IPHN------------LTYLSSLTTLSLSGCDLRGRIPSSLGNITR--LIHLDLSFNKLS 235
           I  N            L     +        +++    ++   + R  + HLDLS   + 
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 236 DELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQ 295
                   TL  LK L+L  N ++     +   L +L+ ++LS N            L +
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-----------LGE 328

Query: 296 LHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS 355
           L+              ++F  L  +  +D+ +   +     +   L  L  LD   N  +
Sbjct: 329 LY-------------SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

Query: 356 GKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQ 415
                   +     +  +FLS N+L  L K              L + D   I  FL   
Sbjct: 376 -------TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD---ILYFLLRV 425

Query: 416 HHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTG 475
            HL++L L  N+ +             +   L L  N L    +                
Sbjct: 426 PHLQILILNQNRFS-SCSGDQTPSENPSLEQLFLGENMLQLAWETELC------------ 472

Query: 476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGN 535
                   LS+ L+ L L++N L+ L P    + +  L  L L  N+ +  +  N L  N
Sbjct: 473 --WDVFEGLSH-LQVLYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNRLT-VLSHNDLPAN 527

Query: 536 ILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSN 593
            L+++D+S N L    P    + S L+     +  I +   S      +   + +   
Sbjct: 528 -LEILDISRNQLLAPNPDVFVSLSVLDI--THNKFICECELSTFINWLNHTNVTIAGP 582

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  123 bits (310), Expect = 6e-29
 Identities = 74/398 (18%), Positives = 129/398 (32%), Gaps = 49/398 (12%)

Query: 392 SHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSH 451
           S   R      C+LT++P+ L      E L L+ N I   V      P ++    L L  
Sbjct: 3   SFDGRIAFYRFCNLTQVPQVLNT---TERLLLSFNYIR-TVTASSF-PFLEQLQLLELGS 57

Query: 452 NFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSD 511
                                    I          L  LDL  + +  L P        
Sbjct: 58  Q-------------------YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98

Query: 512 WLSILDLQHNKFS-GTIPDNLLKGNI-LKVIDLSDNLLQG-RIPRSLANCSNLEFLDLGD 568
            L  L L     S   + D   +    L  +DLS N ++   +  S    ++L+ +D   
Sbjct: 99  -LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 569 NQIRDIFPSWLGTL--PDLNVLILKSNKFHGLIREPKTDCG----FPKLRIIDLSKNRFT 622
           NQI  +    L  L    L+   L +N  +  +      C        L I+D+S N +T
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 623 GKLPSMAFQCWNAMKVVNASELRYMQEV-IPFNEGNGIYDYSLTMSNKGQM----MSYKK 677
             +        +  +  +     ++      F+        +     +  +    +S+  
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277

Query: 678 IPDI----------LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNL 727
           +  +          L  + L+ N+ +     +   L  LQ+L+L+ N L     S    L
Sbjct: 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 728 TDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
             +  +DL  N  +    Q    L  L+  ++ DN  T
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (309), Expect = 8e-29
 Identities = 70/387 (18%), Positives = 123/387 (31%), Gaps = 33/387 (8%)

Query: 50  GNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGS 109
           GN  +  S           H++        ++    ++ +      +  LDL+       
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV--F 279

Query: 110 EIPPEII-NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168
            +   +   L  L  LNL+    +         L  L  L+LS+N      EL   +   
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL---GELYSSNFYG 336

Query: 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLD 228
               L  +  + L    I+        +L  L TL L    L     +++  I  +  + 
Sbjct: 337 ----LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIF 387

Query: 229 LSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVP 287
           LS NKL     T      +   + L +N L           +  L+ + L+ NRF     
Sbjct: 388 LSGNKLV----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 288 SSL-GNLTQLHWLSLASNDFSGELPAS-----FGNLRSLRTLDVYECKFSGQIPSSLSNL 341
                    L  L L  N              F  L  L+ L +     +   P   S+L
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503

Query: 342 THLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKAT-SNTTSHRFRAVSL 400
           T L  L  + N  +  +  +    N   L  L +S N+L         + +         
Sbjct: 504 TALRGLSLNSNRLT-VLSHNDLPAN---LEILDISRNQLLAPNPDVFVSLSVLDITHNKF 559

Query: 401 -CSCDLTEIPKFLKNQHHLELLDLASN 426
            C C+L+    +L N  ++ +    ++
Sbjct: 560 ICECELSTFINWL-NHTNVTIAGPPAD 585

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.9 bits (249), Expect = 2e-21
 Identities = 54/312 (17%), Positives = 105/312 (33%), Gaps = 38/312 (12%)

Query: 482 CNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVI 540
           C+   R+      + NL+ + PQ L         L L  N    T+  +       L+++
Sbjct: 2   CSFDGRI--AFYRFCNLTQV-PQVLNT----TERLLLSFNYIR-TVTASSFPFLEQLQLL 53

Query: 541 DLSDNLLQGRI-PRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLI 599
           +L        I   +  N  NL  LDLG ++I  + P     L  L  L L        +
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

Query: 600 REPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGI 659
            +         L  +DLSKN+        +F   N++K ++ S  +    ++  +E   +
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI--FLVCEHELEPL 171

Query: 660 YDYSLTMSNKGQMMSYKKIPDI------------LTAVILSSNRFDGEIP---------- 697
              +L+  +      Y ++               L  + +S N +  +I           
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231

Query: 698 --TSISNLKGLQILSLADNSLHGHIPSCLGNL--TDLESLDLSNNRFSGQIPQQLVELTF 753
              S+     +       +++     +    L  + +  LDLS+        +    L  
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291

Query: 754 LEFFNVSDNHFT 765
           L+  N++ N   
Sbjct: 292 LKVLNLAYNKIN 303

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  180 bits (459), Expect = 1e-48
 Identities = 97/534 (18%), Positives = 195/534 (36%), Gaps = 54/534 (10%)

Query: 116 INLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTN 175
           ++  +    +  S +F+  IPS +   + +  LDLS N       +    L        N
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKI---TYIGHGDLRAC----AN 51

Query: 176 LKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLS 235
           L+ L+L    I++        L SL  L LS   L     S  G ++ L +L+L  N   
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 236 D-ELPTFIGTLGSLKELDLLQNNLSGELP-NSIGNLASLEQVDLSLNRFLGKVPSSLGNL 293
              + +    L +L+ L +       E+       L SL ++++           SL ++
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 294 TQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFL------ 347
             +H L+L  ++ +  L      L S+R L++ +   +    S L      S +      
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 348 --DFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSH--RFRAVSLCSC 403
               +  +F+  + L  +++    +     + N L     + S+  S   +   V++   
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 404 DLTEI------PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT-- 455
            + +                ++ + + ++K+   VP       +++   L+LS N +   
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ-HLKSLEFLDLSENLMVEE 349

Query: 456 -----GFDQHPNTVNYL-VSNNSLT--GEIPSWICNLSNRLESLDLSYNNLSGLLPQCLG 507
                       ++  L +S N L    +    +  L N L SLD+S N    +   C  
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN-LTSLDISRNTFHPMPDSCQW 408

Query: 508 NFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLG 567
                +  L+L        +   + +   L+V+D+S+N L       L     L+ L + 
Sbjct: 409 PEK--MRFLNLSSTGIR-VVKTCIPQT--LEVLDVSNNNLD-SFSLFL---PRLQELYIS 459

Query: 568 DNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRF 621
            N+++ +  + L   P L V+ +  N+   +            L+ I L  N +
Sbjct: 460 RNKLKTLPDASL--FPVLLVMKISRNQLKSV--PDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  166 bits (422), Expect = 1e-43
 Identities = 109/584 (18%), Positives = 194/584 (33%), Gaps = 103/584 (17%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK 249
           IP  L   +++ +L LS   +       L     L  L L  ++++        +LGSL+
Sbjct: 20  IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77

Query: 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASNDFSG 308
            LDL  N+LS    +  G L+SL+ ++L  N +    V S   NLT L  L + + +   
Sbjct: 78  HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 309 ELPA-SFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH 367
           E+    F  L SL  L++           SL ++  +  L   L+  +    L+IF    
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA--FLLEIFADIL 195

Query: 368 KLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNK 427
             + +L L    L+    +                          +    ++ L    + 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPV---------------------DEVSSPMKKLAFRGSV 234

Query: 428 INGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSN- 486
           +         D S      L      L+  +    T+N L   N    ++ S +  +   
Sbjct: 235 L--------TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286

Query: 487 RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI-LKVIDLSDN 545
            +  L +    L   L          +  + ++++K    +P +  +    L+ +DLS+N
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEK-VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344

Query: 546 LLQGRI---PRSLANCSNLEFLDLGDNQIRDI--FPSWLGTLPDLNVLILKSNKFHGLIR 600
           L+               +L+ L L  N +R +      L TL +L  L +  N FH +  
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-- 402

Query: 601 EPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIY 660
            P +     K+R ++LS                                V+         
Sbjct: 403 -PDSCQWPEKMRFLNLSSTGIR---------------------------VVKTC------ 428

Query: 661 DYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHI 720
                            IP  L  + +S+N  D         L  LQ L ++ N L   +
Sbjct: 429 -----------------IPQTLEVLDVSNNNLD-SFS---LFLPRLQELYISRNKLK-TL 466

Query: 721 PSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHF 764
           P        L  + +S N+           LT L+   +  N +
Sbjct: 467 PDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  164 bits (417), Expect = 5e-43
 Identities = 87/469 (18%), Positives = 161/469 (34%), Gaps = 33/469 (7%)

Query: 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN 232
              +K L L    I+     +L   ++L  L L    +      +  ++  L HLDLS N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 233 KLSDELPTFIGTLGSLKELDLLQNNLSG-ELPNSIGNLASLEQVDLSLNRFLGKVP-SSL 290
            LS    ++ G L SLK L+L+ N      + +   NL +L+ + +       ++     
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 291 GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFS 350
             LT L+ L + +         S  ++R +  L ++  + +  +      L+ + +L+  
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 351 LNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK 410
             N + +       V+        L+     L  ++ +         + L   +  +   
Sbjct: 205 DTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT- 262

Query: 411 FLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFD----QHPNTVNY 466
                    L D   ++ +  V   L          L++   +L             V  
Sbjct: 263 ------LNGLGDFNPSESD--VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 467 L-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDW--LSILDLQHNKF 523
           + V N+ +   +P         LE LDLS N +     +       W  L  L L  N  
Sbjct: 315 ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 524 S--GTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGT 581
                  + LL    L  +D+S N     +P S      + FL+L    IR +       
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT---CI 429

Query: 582 LPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF 630
              L VL + +N               P+L+ + +S+N+    LP  + 
Sbjct: 430 PQTLEVLDVSNNNLDSF------SLFLPRLQELYISRNKLK-TLPDASL 471

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (359), Expect = 1e-35
 Identities = 86/455 (18%), Positives = 151/455 (33%), Gaps = 28/455 (6%)

Query: 73  LDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFS 132
           LDLS + L  S+ SSS    L  L++L+L  N +    +     NL++L  L + +    
Sbjct: 79  LDLSDNHLS-SL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 133 GQIPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP 191
            +I       L+ L  L++   S      LR     +L   + ++  L L     +  + 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALS------LRNYQSQSL-KSIRDIHHLTLHLSESAFLLE 189

Query: 192 HNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL 251
                LSS+  L L   +L     S L        +     + S           S  EL
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD------ESFNEL 243

Query: 252 DLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELP 311
             L   +         +       D + +               +  L +       +L 
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 312 ASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGK-MDLDIFLVNHKLL 370
             +  L  ++ + V   K      S   +L  L FLD S N    + +           L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 371 YHLFLSTNRLSLLTKATSNTTSHRF-RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKIN 429
             L LS N L  + K      + +   ++ +       +P   +    +  L+L+S  I 
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI- 422

Query: 430 GKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYL-VSNNSLTGEIPSWICNLSNRL 488
               + +     Q    L++S+N L  F      +  L +S N L   +P    +L   L
Sbjct: 423 ----RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD--ASLFPVL 475

Query: 489 ESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKF 523
             + +S N L  +        +  L  + L  N +
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTS-LQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (326), Expect = 2e-31
 Identities = 80/542 (14%), Positives = 163/542 (30%), Gaps = 110/542 (20%)

Query: 227 LDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKV 286
            D      +  +P+  G   ++K LDL  N ++      +   A+L+ + L  +R     
Sbjct: 10  CDGRSRSFT-SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 287 PSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG-QIPSSLSNLTHLS 345
             +  +L  L  L L+ N  S    + FG L SL+ L++    +    + S   NLT+L 
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 346 FLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL 405
            L         ++    F      L  L +    L      +                  
Sbjct: 127 TLRIGNVETFSEIRRIDFA-GLTSLNELEIKALSLRNYQSQS------------------ 167

Query: 406 TEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVN 465
                 LK+   +  L L  ++    + +   D  + +  +L L    L  F   P  V+
Sbjct: 168 ------LKSIRDIHHLTLHLSESA-FLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 466 YLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSG 525
            + S         S + + S     L      +  L      + +    + D   ++   
Sbjct: 220 EVSSPMKKLAFRGSVLTDES--FNELLKLLRYILELSEVEFDDCT-LNGLGDFNPSESDV 276

Query: 526 TIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDL 585
                 ++   ++ + +    L   +    +    ++ + + ++++  +           
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC--------- 327

Query: 586 NVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR 645
                  +    L            L  +DLS+N    +                     
Sbjct: 328 -------SFSQHL----------KSLEFLDLSENLMVEEYLK------------------ 352

Query: 646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFD--GEIPTSISNL 703
                                + KG   S       L  ++LS N      +    +  L
Sbjct: 353 -------------------NSACKGAWPS-------LQTLVLSQNHLRSMQKTGEILLTL 386

Query: 704 KGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNH 763
           K L  L ++ N+ H  +P        +  L+LS+      +   +     LE  +VS+N+
Sbjct: 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNN 442

Query: 764 FT 765
             
Sbjct: 443 LD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  111 bits (280), Expect = 1e-25
 Identities = 68/400 (17%), Positives = 130/400 (32%), Gaps = 58/400 (14%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAA 130
            L + +      I        L  L  L++            + + ++  + +L L  + 
Sbjct: 127 TLRIGNVETFSEI-RRIDFAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHHLTLHLSE 183

Query: 131 FSGQIPSEILELSKLAYLDLSHNSYY------------------------DPVELRKPSL 166
            +  +      LS + YL+L   +                             +     L
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 167 GNLADKLTNLKELVLGDVTI---------SSPIPHNLTYLS--SLTTLSLSGCDLRGRIP 215
             L   +  L E+   D T+          S +   L  +   ++  L +    L   + 
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGEL---PNSIGNLASL 272
           +    + ++  + +  +K+     +F   L SL+ LDL +N +  E        G   SL
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 273 EQVDLSLNRF--LGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF 330
           + + LS N    + K    L  L  L  L ++ N F   +P S      +R L++     
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

Query: 331 SGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNT 390
              + + +     L  LD S NN        +FL     L  L++S N+L  L      +
Sbjct: 423 R-VVKTCI--PQTLEVLDVSNNNLD---SFSLFLPR---LQELYISRNKLKTL---PDAS 470

Query: 391 TSHRFRAVSLCSCDLTEIPK-FLKNQHHLELLDLASNKIN 429
                  + +    L  +P         L+ + L +N  +
Sbjct: 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.9 bits (213), Expect = 2e-17
 Identities = 57/329 (17%), Positives = 106/329 (32%), Gaps = 56/329 (17%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
            + S T  IPS    L+  ++SLDLS+N ++ +    L   ++ L +L L+ ++ + TI 
Sbjct: 13  RSRSFT-SIPS---GLTAAMKSLDLSFNKITYIGHGDLRACAN-LQVLILKSSRIN-TIE 66

Query: 529 DNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI-FPSWLGTLPDLN 586
            +       L+ +DLSDN L           S+L++L+L  N  + +   S    L +L 
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 587 VLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRY 646
            L + + +    IR      G   L  +++          S + +               
Sbjct: 127 TLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLR-NYQSQSLK--------------- 169

Query: 647 MQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGL 706
                           S+                 +  + L  +     +      L  +
Sbjct: 170 ----------------SIRD---------------IHHLTLHLSESAFLLEIFADILSSV 198

Query: 707 QILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTG 766
           + L L D +L     S L        +     R S    +   EL  L  + +  +    
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 767 PIPQGKQFATFDKTSFDGNSGLCGRPLSS 795
                     F+ +  D  S L      +
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVT 287

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.5 bits (199), Expect = 9e-16
 Identities = 43/254 (16%), Positives = 78/254 (30%), Gaps = 50/254 (19%)

Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572
             + D +   F+ +IP  L     +K +DLS N +       L  C+NL+ L L  ++I 
Sbjct: 7   SGVCDGRSRSFT-SIPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC 632
            I      +L  L  L L  N    L            L+ ++L  N +     +  F  
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP- 120

Query: 633 WNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRF 692
                  N + L+                  L + N       +                
Sbjct: 121 -------NLTNLQT-----------------LRIGNVETFSEIR---------------- 140

Query: 693 DGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELT 752
                   + L  L  L +   SL  +    L ++ D+  L L  +  +  +      L+
Sbjct: 141 ----RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 753 FLEFFNVSDNHFTG 766
            + +  + D +   
Sbjct: 197 SVRYLELRDTNLAR 210

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  171 bits (435), Expect = 5e-46
 Identities = 108/523 (20%), Positives = 192/523 (36%), Gaps = 75/523 (14%)

Query: 83  SINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILEL 142
            IN   +   L       L   +           +L  ++ L              +  L
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIK--SIDGVEYL 67

Query: 143 SKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTT 202
           + L  ++ S+N   D   L           LT L ++++ +  I+   P  L  L++LT 
Sbjct: 68  NNLTQINFSNNQLTDITPL---------KNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 203 LSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGEL 262
           L+L    +       L N+T L  L+LS N +SD   + +  L SL++L    N ++   
Sbjct: 117 LTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS-FGNQVTDLK 171

Query: 263 PNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRT 322
           P  + NL +LE++D+S N+      S L  LT L  L   +N  S   P   G L +L  
Sbjct: 172 P--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDE 225

Query: 323 LDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL 382
           L +   +       +L++LT+L+ LD + N  S    L         L  L L  N++S 
Sbjct: 226 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS----GLTKLTELKLGANQISN 279

Query: 383 LTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQ 442
           ++                           L     L  L+L  N++    P      +++
Sbjct: 280 IS--------------------------PLAGLTALTNLELNENQLEDISPIS----NLK 309

Query: 443 NFGHLNLSHNFLTGFD--QHPNTVNYL-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLS 499
           N  +L L  N ++          +  L   NN ++    S + NL+N +  L   +N +S
Sbjct: 310 NLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTN-INWLSAGHNQIS 366

Query: 500 GLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCS 559
            L P  L N +  ++ L L    ++    +     +I   +      L    P ++++  
Sbjct: 367 DLTP--LANLTR-ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGG 421

Query: 560 NLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREP 602
           +    D+  N           T      +   +  F G + +P
Sbjct: 422 SYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGTTTFSGTVTQP 463

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  160 bits (407), Expect = 2e-42
 Identities = 105/452 (23%), Positives = 172/452 (38%), Gaps = 44/452 (9%)

Query: 171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLS 230
             L    + VLG   ++  +    T L  +TTL      ++      +  +  L  ++ S
Sbjct: 21  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFS 76

Query: 231 FNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSL 290
            N+L+D   T +  L  L ++ +  N ++      + NL +L  + L  N+        L
Sbjct: 77  NNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI--TDIDPL 130

Query: 291 GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFS 350
            NLT L+ L L+SN  S    ++   L SL+ L              L+NLT L  LD S
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDIS 185

Query: 351 LNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK 410
            N  S   D+   L     L  L  + N++S +T     T       +SL    L +I  
Sbjct: 186 SNKVS---DIS-VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIG- 237

Query: 411 FLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG---FDQHPNTVNYL 467
            L +  +L  LDLA+N+I+   P       +     L L  N ++            N  
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISPLAGLTALTNLE 293

Query: 468 VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTI 527
           ++ N L    P  I NL N L  L L +NN+S + P  + + +  L  L   +NK S   
Sbjct: 294 LNENQLEDISP--ISNLKN-LTYLTLYFNNISDISP--VSSLTK-LQRLFFYNNKVSDVS 347

Query: 528 PDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNV 587
               L    +  +    N +    P  LAN + +  L L D    +   ++   +   N 
Sbjct: 348 SLANLTN--INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 588 LILKSNKFHGLIREPKTDCGFPKLRIIDLSKN 619
           +   +      +  P T          D++ N
Sbjct: 404 VKNVTG----ALIAPATISDGGSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (395), Expect = 8e-41
 Identities = 110/466 (23%), Positives = 187/466 (40%), Gaps = 51/466 (10%)

Query: 69  HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSS 128
            V  L          I S   +  L +L  ++ + N    ++I P + NL+ L  + +++
Sbjct: 47  QVTTLQADRL----GIKSIDGVEYLNNLTQINFSNNQL--TDITP-LKNLTKLVDILMNN 99

Query: 129 AAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISS 188
              +    + +  L+ L  L L +N   D   L           LTNL  L L   TIS 
Sbjct: 100 NQIAD--ITPLANLTNLTGLTLFNNQITDIDPL---------KNLTNLNRLELSSNTISD 148

Query: 189 PIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL 248
                L+ L+SL  LS             L N+T L  LD+S NK+SD   + +  L +L
Sbjct: 149 ISA--LSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNL 201

Query: 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSG 308
           + L    N +S   P  +G L +L+++ L+ N+   K   +L +LT L  L LA+N  S 
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN 257

Query: 309 ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHK 368
             P     L  L  L +   + S    S L+ LT L+ L+ + N           + N K
Sbjct: 258 LAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI----SPISNLK 309

Query: 369 LLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKI 428
            L +L L  N +S ++   S+ T    + +   +  ++++   L N  ++  L    N+I
Sbjct: 310 NLTYLTLYFNNISDIS-PVSSLTK--LQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQI 365

Query: 429 NGKVPKWLLDPSMQNFGHLNLSHNFLTGFD---QHPNTVNYLVSNNSLTGEIPSWICNLS 485
           +   P      ++     L L+    T      +   ++   V N +     P+ I +  
Sbjct: 366 SDLTP----LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGG 421

Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNL 531
           +     D+++N  S    +    FS     +      FSGT+   L
Sbjct: 422 S-YTEPDITWNLPSY-TNEVSYTFS-QPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  153 bits (389), Expect = 5e-40
 Identities = 107/573 (18%), Positives = 189/573 (32%), Gaps = 114/573 (19%)

Query: 177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD 236
              +  D  I+       T L+      L   ++   +     ++ ++  L      +  
Sbjct: 5   SATITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS 60

Query: 237 ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL 296
                +  L +L +++   N L+   P  + NL  L  + ++ N+      + L NLT L
Sbjct: 61  --IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI--ADITPLANLTNL 114

Query: 297 HWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG 356
             L+L +N  +        NL +L  L++     S    S+LS LT L  L F  N  + 
Sbjct: 115 TGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTD 169

Query: 357 KMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQH 416
              L     N   L  L +S+N++S                              L    
Sbjct: 170 LKPLA----NLTTLERLDISSNKVS--------------------------DISVLAKLT 199

Query: 417 HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGE 476
           +LE L   +N+I+   P       + N   L+L+ N L                      
Sbjct: 200 NLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDIGT----------------- 238

Query: 477 IPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI 536
               + +L+N L  LDL+ N +S L P  L   +  L+ L L  N+ S   P   L    
Sbjct: 239 ----LASLTN-LTDLDLANNQISNLAP--LSGLTK-LTELKLGANQISNISPLAGLTA-- 288

Query: 537 LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
           L  ++L++N L+   P  ++N  NL +L L  N I DI P  + +L  L  L   +NK  
Sbjct: 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK-- 342

Query: 597 GLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEG 656
             + +  +      +  +    N+ +   P         +  +  +              
Sbjct: 343 --VSDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLN-------------D 384

Query: 657 NGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEI-PTSISNLKGLQILSLADNS 715
               +  +                 ++      N     I P +IS+        +  N 
Sbjct: 385 QAWTNAPVNYKAN------------VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNL 432

Query: 716 LHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQL 748
                       +   ++      FSG + Q L
Sbjct: 433 PSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (360), Expect = 3e-36
 Identities = 95/525 (18%), Positives = 165/525 (31%), Gaps = 112/525 (21%)

Query: 246 GSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASND 305
           G L    + Q+    ++      LA   +  L           S  +L Q+  L      
Sbjct: 1   GPLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLG 57

Query: 306 FSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLV 365
                      L +L  ++    + +   P  L NLT L  +  + N  +        L 
Sbjct: 58  IKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD----ITPLA 109

Query: 366 NHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLAS 425
           N   L  L L  N+++ +                            LKN  +L  L+L+S
Sbjct: 110 NLTNLTGLTLFNNQITDI--------------------------DPLKNLTNLNRLELSS 143

Query: 426 NKINGKVPKWLLDPSMQNFGHLNLSHNFLT--GFDQHPNTVNYLVSNNSLTGEIPSWICN 483
           N I+           + +   L+  +                  +S+N ++    S +  
Sbjct: 144 NTISDISAL----SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAK 197

Query: 484 LSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLS 543
           L+N LESL  + N +S + P  LG  ++ L  L L  N+         L    L  +DL+
Sbjct: 198 LTN-LESLIATNNQISDITP--LGILTN-LDELSLNGNQLKDIGTLASLTN--LTDLDLA 251

Query: 544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPK 603
           +N +    P  L+  + L  L LG NQI +I P  L  L  L  L L  N+    + +  
Sbjct: 252 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ----LEDIS 303

Query: 604 TDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYS 663
                  L  + L  N  +                 + S +  + +              
Sbjct: 304 PISNLKNLTYLTLYFNNIS-----------------DISPVSSLTK-------------- 332

Query: 664 LTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSC 723
                             L  +   +N+      +S++NL  +  LS   N +    P  
Sbjct: 333 ------------------LQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP-- 370

Query: 724 LGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPI 768
           L NLT +  L L++  ++         ++              P 
Sbjct: 371 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 682 LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS 741
           LT +  S+N+     P  + NL  L  + + +N +    P  L NLT+L  L L NN+ +
Sbjct: 70  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125

Query: 742 GQIPQQLVELTFLEFFNVSDNHFTGPIPQGK 772
              P  L  LT L    +S N  +       
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISDISALSG 154

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  169 bits (431), Expect = 1e-45
 Identities = 100/509 (19%), Positives = 180/509 (35%), Gaps = 66/509 (12%)

Query: 91  FKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDL 150
                L+      ++   +E+P E  N+ S +    + + +    P    E  ++A   L
Sbjct: 8   VSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 151 SHNSYY--DPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGC 208
                     +EL    L +L +   +L+ LV    +++  +P     L SL   + +  
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLK 124

Query: 209 DLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGN 268
            L    P        L +L +S N+L  +LP  +     LK +D+  N+L  +LP+   +
Sbjct: 125 ALSDLPPL-------LEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS 174

Query: 269 LASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC 328
           L  +       N+   +    L NL  L  +   +N     L        SL ++     
Sbjct: 175 LEFI---AAGNNQL--EELPELQNLPFLTAIYADNN----SLKKLPDLPLSLESIVAGNN 225

Query: 329 KFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATS 388
                    L NL  L+ +    N       L     +   L  L +  N L+ L +   
Sbjct: 226 ILE--ELPELQNLPFLTTIYADNNLLK---TLPDLPPS---LEALNVRDNYLTDLPELPQ 277

Query: 389 NTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLN 448
           + T      + +     + + +   N   L  L+ +SN+I        L     +   LN
Sbjct: 278 SLTF-----LDVSENIFSGLSELPPN---LYYLNASSNEIRS------LCDLPPSLEELN 323

Query: 449 LSHNFLTGFDQHPNTVNYL-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLG 507
           +S+N L      P  +  L  S N L  E+P    N    L+ L + YN L    P    
Sbjct: 324 VSNNKLIELPALPPRLERLIASFNHLA-EVPELPQN----LKQLHVEYNPLRE-FPDIPE 377

Query: 508 NFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLG 567
           +      + DL+ N     +P+       LK + +  N L+   P       ++E L + 
Sbjct: 378 S------VEDLRMNSHLAEVPELPQN---LKQLHVETNPLR-EFPDIP---ESVEDLRMN 424

Query: 568 DNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
             ++ D +     T   L   + + +  H
Sbjct: 425 SERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  139 bits (353), Expect = 2e-35
 Identities = 94/572 (16%), Positives = 180/572 (31%), Gaps = 131/572 (22%)

Query: 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN 232
            T L+E +     ++  +P     + S T    +  +     P   G        +++ +
Sbjct: 10  NTFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGE-----QREMAVS 63

Query: 233 KLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN 292
           +L D L           EL+L    LS  LP    +L SL     S N  L ++P    +
Sbjct: 64  RLRDCLDR------QAHELELNNLGLS-SLPELPPHLESL---VASCNS-LTELPELPQS 112

Query: 293 LTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352
           L  L   +      S   P        L  L V   +   ++P  L N + L  +D   N
Sbjct: 113 LKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNN 163

Query: 353 NFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412
           +      L     +   L  +    N+L                          E+P+  
Sbjct: 164 SLK---KLPDLPPS---LEFIAAGNNQL-------------------------EELPELQ 192

Query: 413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVN--YL-VS 469
            N   L  +   +N +        L     +   +   +N L    +  N      +   
Sbjct: 193 -NLPFLTAIYADNNSLKK------LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245

Query: 470 NNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD 529
           NN L   +P    +L    E+L++  N L+ L P+   +    L+ LD+  N FS  + +
Sbjct: 246 NNLLK-TLPDLPPSL----EALNVRDNYLTDL-PELPQS----LTFLDVSENIFS-GLSE 294

Query: 530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLI 589
                  L  ++ S N ++  +        +LE L++ +N++ ++        P L  LI
Sbjct: 295 LPPN---LYYLNASSNEIR-SLCDLP---PSLEELNVSNNKLIELPAL----PPRLERLI 343

Query: 590 LKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQE 649
              N    +   P+       L+ + +  N    + P +                     
Sbjct: 344 ASFNHLAEVPELPQ------NLKQLHVEYNPLR-EFPDIPESV----------------- 379

Query: 650 VIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQIL 709
                         L M++    +   ++P  L  + + +N    E P    +++ L++ 
Sbjct: 380 ------------EDLRMNSHLAEVP--ELPQNLKQLHVETNPLR-EFPDIPESVEDLRMN 424

Query: 710 SLADNSLHGHIPSCLGNLTDLESLDLSNNRFS 741
                 +             LE     ++   
Sbjct: 425 ---SERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (264), Expect = 5e-24
 Identities = 66/417 (15%), Positives = 125/417 (29%), Gaps = 105/417 (25%)

Query: 83  SINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILEL 142
            +     L     L+ +D+  N     ++P       SL ++   +         E+  L
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSL--KKLPDL---PPSLEFIAAGNNQLE--ELPELQNL 194

Query: 143 SKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTT 202
             L  +   +N           SL  L D   +L+ +V G+  +       L  L  LTT
Sbjct: 195 PFLTAIYADNN-----------SLKKLPDLPLSLESIVAGNNILEE--LPELQNLPFLTT 241

Query: 203 LSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGEL 262
           +      L+  +P    ++  L   D     L +          SL  LD+ +N  S  L
Sbjct: 242 IYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPEL-------PQSLTFLDVSENIFS-GL 292

Query: 263 PNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRT 322
                NL  L   + S N  +  +     +L     L++++N    ELPA    L     
Sbjct: 293 SELPPNLYYL---NASSNE-IRSLCDLPPSLE---ELNVSNNKLI-ELPALPPRLER--- 341

Query: 323 LDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL 382
           L       + ++P    NL  L                              +  N L  
Sbjct: 342 LIASFNHLA-EVPELPQNLKQLH-----------------------------VEYNPLRE 371

Query: 383 LTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQ 442
                 +    R       +  L E+P+  +N   L+ L + +N +             +
Sbjct: 372 FPDIPESVEDLR------MNSHLAEVPELPQN---LKQLHVETNPLRE------FPDIPE 416

Query: 443 NFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLS 499
           +   L ++   +                     +   +    +++LE     +++  
Sbjct: 417 SVEDLRMNSERVV--------------------DPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (250), Expect = 3e-22
 Identities = 82/374 (21%), Positives = 143/374 (38%), Gaps = 57/374 (15%)

Query: 404 DLTEIPKFLKNQHHLELLDLASNKINGKVPKWLL-----------DPSMQNFGHLNLSHN 452
           +LTE+P   +N         A ++     P               D   +    L L++ 
Sbjct: 22  NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81

Query: 453 FLTGFDQHPNTVNYL-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSD 511
            L+   + P  +  L  S NSLT E+P    +L + L   + +   LS L P        
Sbjct: 82  GLSSLPELPPHLESLVASCNSLT-ELPELPQSLKS-LLVDNNNLKALSDLPPL------- 132

Query: 512 WLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQI 571
            L  L + +N+    +P+ L   + LK+ID+ +N L+ ++P       +LEF+  G+NQ+
Sbjct: 133 -LEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQL 185

Query: 572 RDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQ 631
            ++    L  LP L  +   +N    L   P        L  I    N    +LP    Q
Sbjct: 186 EELPE--LQNLPFLTAIYADNNSLKKLPDLP------LSLESIVAGNNILE-ELPE--LQ 234

Query: 632 CWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNR 691
               +  + A       + +P    +     +L + +   +    ++P  LT + +S N 
Sbjct: 235 NLPFLTTIYADNNL--LKTLPDLPPSLE---ALNVRDN-YLTDLPELPQSLTFLDVSENI 288

Query: 692 FDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVEL 751
           F   +     NL     L+ + N +   +     +L   E L++SNN+   ++P     L
Sbjct: 289 FS-GLSELPPNLY---YLNASSNEIR-SLCDLPPSL---EELNVSNNKLI-ELPALPPRL 339

Query: 752 TFLEFFNVSDNHFT 765
             L     S NH  
Sbjct: 340 ERL---IASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.0 bits (190), Expect = 9e-15
 Identities = 59/306 (19%), Positives = 113/306 (36%), Gaps = 59/306 (19%)

Query: 467 LVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGT 526
           L  +++LT E+P    N+ +       +++      P   G        + +        
Sbjct: 17  LRHSSNLT-EMPVEAENVKS-KTEYYNAWSEWERNAPPGNGE----QREMAVSR------ 64

Query: 527 IPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586
           + D L +      ++L++  L   +P       +LE L    N + ++ P    +L  L 
Sbjct: 65  LRDCLDRQ--AHELELNNLGLS-SLPELP---PHLESLVASCNSLTEL-PELPQSLKSLL 117

Query: 587 VLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASE--L 644
           V          L          P L  + +S N+   KLP    Q  + +K+++     L
Sbjct: 118 VDNNNLKALSDLP---------PLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSL 165

Query: 645 RYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDI-----LTAVILSSNRFDGEIPTS 699
           + + ++ P  E        +   N       +++P++     LTA+   +N    ++P  
Sbjct: 166 KKLPDLPPSLE-------FIAAGN----NQLEELPELQNLPFLTAIYADNNSLK-KLPDL 213

Query: 700 ISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNV 759
             +L   + +   +N L   +P  L NL  L ++   NN     +P     L  L   NV
Sbjct: 214 PLSL---ESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPPSLEAL---NV 264

Query: 760 SDNHFT 765
            DN+ T
Sbjct: 265 RDNYLT 270

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.8 bits (161), Expect = 3e-11
 Identities = 44/291 (15%), Positives = 90/291 (30%), Gaps = 73/291 (25%)

Query: 483 NLSNR-LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVID 541
           N+SN  L+      +NL+ + P    N     +      +++    P    +   + V  
Sbjct: 7   NVSNTFLQEPLRHSSNLTEM-PVEAENVKS-KTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 542 LSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIRE 601
           L D L +               L+L +  +  +        P L  L+   N    L   
Sbjct: 65  LRDCLDR-----------QAHELELNNLGLSSLPEL----PPHLESLVASCNSLTEL--- 106

Query: 602 PKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYD 661
           P+       L + + +    +   P +                                 
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPPLLE-------------------------------- 134

Query: 662 YSLTMSNKGQMMSYKKIPDI-----LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSL 716
             L +SN       +K+P++     L  + + +N    ++P    +L   + ++  +N L
Sbjct: 135 -YLGVSN----NQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQL 185

Query: 717 HGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGP 767
              +P  L NL  L ++   NN    ++P   + L  +      +N     
Sbjct: 186 E-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILEEL 230

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  158 bits (403), Expect = 4e-43
 Identities = 56/294 (19%), Positives = 99/294 (33%), Gaps = 29/294 (9%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSS--LSYLNLSSA 129
           +     +  +   +S+       + +                 + + +      L L S 
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRAL--KATADLLEDATQPGRVALELRSV 91

Query: 130 AFSGQIPSEILELSKLAYLDLSHNSYYDPVELRK--PSLGNLADKLTNLKELVLGDVTIS 187
               Q P +   LS L ++ +          L +   ++         L+ L L    + 
Sbjct: 92  PLP-QFPDQAFRLSHLQHMTIDAAG------LMELPDTMQQF----AGLETLTLARNPLR 140

Query: 188 SPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNI---------TRLIHLDLSFNKLSDEL 238
           + +P ++  L+ L  LS+  C     +P  L +            L  L L +  +   L
Sbjct: 141 A-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL 198

Query: 239 PTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHW 298
           P  I  L +LK L +  + LS  L  +I +L  LE++DL     L   P   G    L  
Sbjct: 199 PASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 299 LSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352
           L L        LP     L  L  LD+  C    ++PS ++ L     +    +
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  157 bits (398), Expect = 2e-42
 Identities = 63/310 (20%), Positives = 109/310 (35%), Gaps = 29/310 (9%)

Query: 44  SWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAF 103
            W+     + +       Q N N  +      +   L+ + +             L+L  
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSN--NPQIETRTGRALKATADLLEDA-TQPGRVALELRS 90

Query: 104 NDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRK 163
                 + P +   LS L ++ + +A    ++P  + + + L  L L+ N       LR 
Sbjct: 91  VPL--PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP------LRA 141

Query: 164 --PSLGNLADKLTNLKELVLGDVTISSPIPHNL---------TYLSSLTTLSLSGCDLRG 212
              S+ +L      L+EL +      + +P  L           L +L +L L    +R 
Sbjct: 142 LPASIASL----NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR- 196

Query: 213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL 272
            +P+S+ N+  L  L +  + LS  L   I  L  L+ELDL         P   G  A L
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 273 EQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG 332
           +++ L     L  +P  +  LTQL  L L        LP+    L +   + V     + 
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

Query: 333 QIPSSLSNLT 342
                     
Sbjct: 316 LDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  145 bits (369), Expect = 1e-38
 Identities = 52/270 (19%), Positives = 98/270 (36%), Gaps = 28/270 (10%)

Query: 97  EWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELS--KLAYLDLSHNS 154
           +W      D +         N ++      +  A        + + +      L+L    
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVP 92

Query: 155 YYDPVELRK--PSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG 212
                 L +       L    ++L+ + +    +   +P  +   + L TL+L+   LR 
Sbjct: 93  ------LPQFPDQAFRL----SHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR- 140

Query: 213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIG---------TLGSLKELDLLQNNLSGELP 263
            +P+S+ ++ RL  L +       ELP  +           L +L+ L L    +   LP
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 264 NSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTL 323
            SI NL +L+ + +  +  L  +  ++ +L +L  L L         P  FG    L+ L
Sbjct: 200 ASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 324 DVYECKFSGQIPSSLSNLTHLSFLDFSLNN 353
            + +C     +P  +  LT L  LD     
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  144 bits (366), Expect = 3e-38
 Identities = 61/395 (15%), Positives = 116/395 (29%), Gaps = 76/395 (19%)

Query: 191 PHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE 250
            H+  + S    L   G          L    R  + D +    +           + + 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQI 60

Query: 251 LDLLQNNLSGELPNSIGNLAS--LEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSG 308
                  L     + + +        ++L     L + P     L+ L  +++ +     
Sbjct: 61  ETRTGRALK-ATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM- 117

Query: 309 ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHK 368
           ELP +      L TL +        +P+S+++L  L  L                     
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC---------------- 160

Query: 369 LLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKI 428
                      L+ L +              L S D +   + L N   L+ L L    I
Sbjct: 161 ---------PELTELPE-------------PLASTDASGEHQGLVN---LQSLRLEWTGI 195

Query: 429 NGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRL 488
              +P  +   ++QN   L + ++ L+                     +   I +L   L
Sbjct: 196 R-SLPASIA--NLQNLKSLKIRNSPLS--------------------ALGPAIHHLPK-L 231

Query: 489 ESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQ 548
           E LDL         P   G  +  L  L L+      T+P ++ +   L+ +DL   +  
Sbjct: 232 EELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 549 GRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLP 583
            R+P  +A       + +  +    +        P
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  141 bits (357), Expect = 5e-37
 Identities = 64/361 (17%), Positives = 113/361 (31%), Gaps = 58/361 (16%)

Query: 112 PPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD 171
                + S    L    +         + +  +    D +          R  S    A+
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN----------RWHSAWRQAN 54

Query: 172 KLTNLKELVLGDVTISSPIPHNLTYLSS--LTTLSLSGCDLRGRIPSSLGNITRLIHLDL 229
              N +        + +     L   +      L L    L  + P     ++ L H+ +
Sbjct: 55  -SNNPQIETRTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTI 111

Query: 230 SFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSS 289
               L  ELP  +     L+ L L +N L   LP SI +L  L ++ +     L ++P  
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 290 LGN---------LTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSN 340
           L +         L  L  L L        LPAS  NL++L++L +     S  +  ++ +
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227

Query: 341 LTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSL 400
           L  L  LD                     L +        + L +            + L
Sbjct: 228 LPKLEELDLRGCT---------------ALRNYPPIFGGRAPLKR------------LIL 260

Query: 401 CSC-DLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQ 459
             C +L  +P  +     LE LDL       ++P  +    +     + +  +     DQ
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI--AQLPANCIILVPPHLQAQLDQ 318

Query: 460 H 460
           H
Sbjct: 319 H 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (284), Expect = 2e-27
 Identities = 59/440 (13%), Positives = 106/440 (24%), Gaps = 121/440 (27%)

Query: 313 SFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYH 372
              +      L              LS        D +  + + +        N      
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR------QANSNNPQI 60

Query: 373 LFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKV 432
              +   L        + T     A+ L S  L + P       HL+ + + +  +    
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--- 117

Query: 433 PKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLD 492
                                                      E+P  +   +  LE+L 
Sbjct: 118 -------------------------------------------ELPDTMQQFAG-LETLT 133

Query: 493 LSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIP 552
           L+ N L  L P  + + +  L  L ++       +P+ L                     
Sbjct: 134 LARNPLRAL-PASIASLNR-LRELSIRACPELTELPEPLA---------------STDAS 176

Query: 553 RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLR 612
                  NL+ L L    IR + P+ +  L +L  L ++++    L          PKL 
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSAL---GPAIHHLPKLE 232

Query: 613 IIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQM 672
            +DL         P                       +                   G  
Sbjct: 233 ELDLRGCTALRNYP----------------------PIF------------------GGR 252

Query: 673 MSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLES 732
                    L  +IL        +P  I  L  L+ L L        +PS +  L     
Sbjct: 253 AP-------LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 733 LDLSNNRFSGQIPQQLVELT 752
           + +  +  +     + V   
Sbjct: 306 ILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (264), Expect = 1e-24
 Identities = 53/351 (15%), Positives = 98/351 (27%), Gaps = 42/351 (11%)

Query: 260 GELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRS 319
           G   +   + +  E +    +  L      L    + +                  N  +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNN 57

Query: 320 LRTLDVYECKFSGQIPSSLSNLTH--LSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLST 377
            +                L + T      L+                     L H+ +  
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDA 113

Query: 378 NRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWL- 436
             L  L              ++L    L  +P  + + + L  L + +     ++P+ L 
Sbjct: 114 AGLMELPDTMQQFAGLET--LTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA 171

Query: 437 ------LDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLES 490
                     + N   L L    +                      +P+ I NL N L+S
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR--------------------SLPASIANLQN-LKS 210

Query: 491 LDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGR 550
           L +  + LS  L   + +    L  LDL+        P        LK + L D      
Sbjct: 211 LKIRNSPLSA-LGPAIHHLPK-LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 551 IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIRE 601
           +P  +   + LE LDL         PS +  LP   ++++  +    L + 
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (254), Expect = 2e-23
 Identities = 53/354 (14%), Positives = 98/354 (27%), Gaps = 68/354 (19%)

Query: 283 LGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLT 342
           +G       + +    L    +             +     D              +N  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 343 HLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCS 402
           +      +                             L        + T     A+ L S
Sbjct: 57  NPQIETRTGRA--------------------------LKATADLLEDATQPGRVALELRS 90

Query: 403 CDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPN 462
             L + P       HL+ + + +  +  ++P  +          L L+ N L        
Sbjct: 91  VPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ--QFAGLETLTLARNPLR------- 140

Query: 463 TVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDW--------LS 514
                         +P+ I +L+  L  L +        LP+ L +            L 
Sbjct: 141 -------------ALPASIASLNR-LRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
            L L+      ++P ++     LK + + ++ L   +  ++ +   LE LDL        
Sbjct: 187 SLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN 244

Query: 575 FPSWLGTLPDLNVLILKS-NKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPS 627
           +P   G    L  LILK  +    L   P       +L  +DL       +LPS
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTL---PLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 53/358 (14%), Positives = 100/358 (27%), Gaps = 73/358 (20%)

Query: 418 LELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVN---YLVSNNSLT 474
            E L    +         L         H N   N      +  N+ N      +  +L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQR----HYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 475 GEIPSWICNL-SNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLK 533
                 + +       +L+L    L    P      S  L  + +        +PD + +
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSH-LQHMTIDAAGLM-ELPDTMQQ 125

Query: 534 GNILKVIDLSDNLLQGRIPRSLANCSNLEFLDL-GDNQIRDI--------FPSWLGTLPD 584
              L+ + L+ N L+  +P S+A+ + L  L +    ++ ++               L +
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 585 LNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASEL 644
           L  L L+      L   P +      L+ + +  +  +   P++                
Sbjct: 185 LQSLRLEWTGIRSL---PASIANLQNLKSLKIRNSPLSALGPAI---------------- 225

Query: 645 RYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLK 704
                                      +         L  + L         P       
Sbjct: 226 -------------------------HHLPK-------LEELDLRGCTALRNYPPIFGGRA 253

Query: 705 GLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDN 762
            L+ L L D S    +P  +  LT LE LDL       ++P  + +L       V  +
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 42/308 (13%), Positives = 95/308 (30%), Gaps = 35/308 (11%)

Query: 466 YLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSG 525
           Y   + +L       +     R  + D +  + +          S+   I          
Sbjct: 18  YFQGSTALR-PYHDVLSQWQ-RHYNADRNRWHSAWRQAN-----SNNPQIETRTGRALK- 69

Query: 526 TIPDNL--LKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLP 583
              D L          ++L    L  + P      S+L+ + +    + ++ P  +    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFA 127

Query: 584 DLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASE 643
            L  L L  N    L   P +     +LR + +       +LP        + +      
Sbjct: 128 GLETLTLARNPLRAL---PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 644 LRYMQEVIPFNEGNGIYDYSLTM--SNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSIS 701
           L+ ++          +    +    ++   + +       L ++ + ++     +  +I 
Sbjct: 185 LQSLR----------LEWTGIRSLPASIANLQN-------LKSLKIRNSPLS-ALGPAIH 226

Query: 702 NLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSD 761
           +L  L+ L L   +   + P   G    L+ L L +      +P  +  LT LE  ++  
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 762 NHFTGPIP 769
                 +P
Sbjct: 287 CVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 82  GSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILE 141
            S ++S     LV+L+ L L +       +P  I NL +L  L + ++  S  +   I  
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227

Query: 142 LSKLAYLDLSHNSYYDPVELRK--PSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSS 199
           L KL  LDL   +      LR   P  G        LK L+L D +    +P ++  L+ 
Sbjct: 228 LPKLEELDLRGCT-----ALRNYPPIFGGR----APLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 200 LTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL 248
           L  L L GC    R+PS +  +     + +  +  +           + 
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 33/241 (13%), Positives = 71/241 (29%), Gaps = 47/241 (19%)

Query: 537 LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
            + +    +         L+        D                  + N   +++    
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRN-------RWHSAWRQANSNNPQIETRTGR 66

Query: 597 GLIREPKT--DCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKV-VNASELRYMQEVIPF 653
            L        D   P    ++L       + P  AF+  +   + ++A+ L  + + +  
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTM-- 123

Query: 654 NEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLAD 713
                            Q          L  + L+ N     +P SI++L  L+ LS+  
Sbjct: 124 ----------------QQFAG-------LETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 714 NSLHGHIPSCLGN---------LTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHF 764
                 +P  L +         L +L+SL L        +P  +  L  L+   + ++  
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218

Query: 765 T 765
           +
Sbjct: 219 S 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 17/132 (12%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLA-FNDFDGSEIPPEIINLSSLSYLNLSSAA 130
            L + +S L        ++  L  LE LDL           PP     + L  L L   +
Sbjct: 210 SLKIRNSPLSAL---GPAIHHLPKLEELDLRGCTAL--RNYPPIFGGRAPLKRLILKDCS 264

Query: 131 FSGQIPSEILELSKLAYLDLSHNSYYDPVELRK--PSLGNLADKLTNLKELVLGDVTISS 188
               +P +I  L++L  LDL          L +    +  L         +++     + 
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCV-----NLSRLPSLIAQL----PANCIILVPPHLQAQ 315

Query: 189 PIPHNLTYLSSL 200
              H      + 
Sbjct: 316 LDQHRPVARPAE 327

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (370), Expect = 2e-38
 Identities = 80/421 (19%), Positives = 145/421 (34%), Gaps = 80/421 (19%)

Query: 176 LKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLS 235
              L      I+   P     L+      L    +      +   +  +  L ++  K++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 236 DELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQ 295
                 I  L +L+ L+L  N ++   P  + NL  L  + +  N+      S+L NLT 
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 296 LHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS 355
           L  L L  ++ S    +   NL  + +L++          S LSN+T L++L  + +   
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK 168

Query: 356 GKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQ 415
                   + N   LY L L+ N++  +                            L + 
Sbjct: 169 DV----TPIANLTDLYSLSLNYNQIEDI--------------------------SPLASL 198

Query: 416 HHLELLDLASNKINGKVPKWLLDP--SMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSL 473
             L       N+I        + P  +M     L + +N +T                  
Sbjct: 199 TSLHYFTAYVNQITD------ITPVANMTRLNSLKIGNNKITDLSP-------------- 238

Query: 474 TGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLK 533
                  + NLS  L  L++  N +S +    + + +  L +L++  N+ S     N L 
Sbjct: 239 -------LANLSQ-LTWLEIGTNQISDINA--VKDLTK-LKMLNVGSNQISDISVLNNLS 287

Query: 534 GNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSN 593
              L  + L++N L       +   +NL  L L  N I DI P  L +L  ++     + 
Sbjct: 288 Q--LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

Query: 594 K 594
            
Sbjct: 344 V 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (354), Expect = 2e-36
 Identities = 86/424 (20%), Positives = 155/424 (36%), Gaps = 80/424 (18%)

Query: 200 LTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLS 259
             TL+     +    P    ++   I   L    ++D +      L S+ +L +    ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 260 GELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRS 319
                 I  L +LE ++L+ N+      S L NL +L  L + +N  +    ++  NL +
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQI--TDISPLSNLVKLTNLYIGTNKITD--ISALQNLTN 111

Query: 320 LRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNR 379
           LR L + E   S    S L+NLT +  L+   N+    +     L N   L +L ++ ++
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESK 166

Query: 380 LSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDP 439
           +  +T                           + N   L  L L  N+I           
Sbjct: 167 VKDVT--------------------------PIANLTDLYSLSLNYNQIE---------- 190

Query: 440 SMQNFGHL-NLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNL 498
            +     L +L +                   N +T   P  + N++  L SL +  N +
Sbjct: 191 DISPLASLTSLHYFTA--------------YVNQITDITP--VANMTR-LNSLKIGNNKI 233

Query: 499 SGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANC 558
           + L P  L N S  L+ L++  N+ S    + +     LK++++  N +       L N 
Sbjct: 234 TDLSP--LANLSQ-LTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNL 286

Query: 559 SNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSK 618
           S L  L L +NQ+ +     +G L +L  L L  N     I + +      K+   D + 
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH----ITDIRPLASLSKMDSADFAN 342

Query: 619 NRFT 622
               
Sbjct: 343 QVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (347), Expect = 2e-35
 Identities = 82/417 (19%), Positives = 148/417 (35%), Gaps = 81/417 (19%)

Query: 83  SINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILEL 142
            IN       L       L                L S++ L ++    +      I  L
Sbjct: 11  PINQIFPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVAS--IQGIEYL 65

Query: 143 SKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTT 202
           + L YL+L+ N   D   L           L  L  L +G   I+      L  L++L  
Sbjct: 66  TNLEYLNLNGNQITDISPL---------SNLVKLTNLYIGTNKITDISA--LQNLTNLRE 114

Query: 203 LSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGEL 262
           L L+  ++     S L N+T++  L+L  N       + +  +  L  L + ++ +    
Sbjct: 115 LYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD-- 169

Query: 263 PNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRT 322
              I NL  L  + L+ N+   +  S L +LT LH+ +   N  +   P    N+  L +
Sbjct: 170 VTPIANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 323 LDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL 382
           L +   K +    S L+NL+ L++L+   N  S   D++  + +   L  L + +N++S 
Sbjct: 226 LKIGNNKITD--LSPLANLSQLTWLEIGTNQIS---DIN-AVKDLTKLKMLNVGSNQISD 279

Query: 383 LTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQ 442
           +                            L N   L  L L +N++  +  + +    + 
Sbjct: 280 I--------------------------SVLNNLSQLNSLFLNNNQLGNEDMEVIG--GLT 311

Query: 443 NFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLS 499
           N   L LS N +T                         + +LS  ++S D +   + 
Sbjct: 312 NLTTLFLSQNHITDIRP---------------------LASLSK-MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (296), Expect = 8e-29
 Identities = 84/497 (16%), Positives = 152/497 (30%), Gaps = 155/497 (31%)

Query: 248 LKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS 307
              L  L   ++   P    +LA   +  L           +   L  +  L +A    +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 308 GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH 367
             +      L +L  L++   + +   P  LSNL  L+ L    N               
Sbjct: 58  -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK-------------- 99

Query: 368 KLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNK 427
                                                +T+I   L+N  +L  L L  + 
Sbjct: 100 -------------------------------------ITDIS-ALQNLTNLRELYLNEDN 121

Query: 428 INGKVPKWLLDP--SMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLS 485
           I+       + P  ++     LNL  N                          S + N++
Sbjct: 122 ISD------ISPLANLTKMYSLNLGANHNLS--------------------DLSPLSNMT 155

Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP-DNLLKGNILKVIDLSD 544
             L  L ++ + +  + P  + N +D L  L L +N+     P  +L     L       
Sbjct: 156 G-LNYLTVTESKVKDVTP--IANLTD-LYSLSLNYNQIEDISPLASLTS---LHYFTAYV 208

Query: 545 NLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKT 604
           N +    P  +AN + L  L +G+N+I D+ P  L  L  L  L + +N+    I +   
Sbjct: 209 NQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ----ISDINA 260

Query: 605 DCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSL 664
                KL+++++  N+ +               +   + L  +                L
Sbjct: 261 VKDLTKLKMLNVGSNQIS--------------DISVLNNLSQLNS--------------L 292

Query: 665 TMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCL 724
            ++N                     N+   E    I  L  L  L L+ N +    P  L
Sbjct: 293 FLNN---------------------NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329

Query: 725 GNLTDLESLDLSNNRFS 741
            +L+ ++S D +N    
Sbjct: 330 ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (286), Expect = 2e-27
 Identities = 75/372 (20%), Positives = 140/372 (37%), Gaps = 58/372 (15%)

Query: 399 SLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDP--SMQNFGHLNLSHNFLTG 456
            L    +T++    +    +  L +A  K+        +     + N  +LNL+ N +T 
Sbjct: 28  VLQKASVTDVV-TQEELESITKLVVAGEKVAS------IQGIEYLTNLEYLNLNGNQITD 80

Query: 457 ---FDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWL 513
                      N  +  N +T    S + NL+N L  L L+ +N+S + P  L N +  +
Sbjct: 81  ISPLSNLVKLTNLYIGTNKIT--DISALQNLTN-LRELYLNEDNISDISP--LANLTK-M 134

Query: 514 SILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573
             L+L  N    +    L     L  + ++++ ++   P  +AN ++L  L L  NQI D
Sbjct: 135 YSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191

Query: 574 IFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCW 633
           I P  L +L  L+      N+    I +        +L  + +  N+ T           
Sbjct: 192 ISP--LASLTSLHYFTAYVNQ----ITDITPVANMTRLNSLKIGNNKITD---LSPLANL 242

Query: 634 NAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFD 693
           + +  +                 N I D    ++    +         L  + + SN+  
Sbjct: 243 SQLTWLEIG-------------TNQISD----INAVKDLTK-------LKMLNVGSNQIS 278

Query: 694 GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTF 753
               + ++NL  L  L L +N L       +G LT+L +L LS N  +   P  L  L+ 
Sbjct: 279 D--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334

Query: 754 LEFFNVSDNHFT 765
           ++  + ++    
Sbjct: 335 MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (279), Expect = 1e-26
 Identities = 71/362 (19%), Positives = 135/362 (37%), Gaps = 55/362 (15%)

Query: 412 LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFD--QHPNTVNYL-V 468
             +        L    +   V +      +++   L ++   +      ++   + YL +
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQ----EELESITKLVVAGEKVASIQGIEYLTNLEYLNL 73

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
           + N +T   P  + NL   L +L +  N ++ +    L N ++ L  L L  +  S   P
Sbjct: 74  NGNQITDISP--LSNLVK-LTNLYIGTNKITDISA--LQNLTN-LRELYLNEDNISDISP 127

Query: 529 -DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNV 587
             NL K   +  ++L  N         L+N + L +L + +++++D+ P  +  L DL  
Sbjct: 128 LANLTK---MYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 588 LILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYM 647
           L L  N+    I +         L       N+ T   P         +  +        
Sbjct: 182 LSLNYNQ----IEDISPLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIG----- 229

Query: 648 QEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQ 707
                    N I D    +S    +         LT + + +N+       ++ +L  L+
Sbjct: 230 --------NNKITD----LSPLANLSQ-------LTWLEIGTNQISD--INAVKDLTKLK 268

Query: 708 ILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGP 767
           +L++  N +     S L NL+ L SL L+NN+   +  + +  LT L    +S NH T  
Sbjct: 269 MLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 768 IP 769
            P
Sbjct: 327 RP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.4 bits (207), Expect = 3e-17
 Identities = 54/282 (19%), Positives = 100/282 (35%), Gaps = 67/282 (23%)

Query: 488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLL 547
             +L      ++ + P    + ++      LQ    +  +    L+   +  + ++   +
Sbjct: 2   AATLATLPAPINQIFP--DADLAE-GIRAVLQKASVTDVVTQEELES--ITKLVVAGEKV 56

Query: 548 QGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCG 607
              I   +   +NLE+L+L  NQI DI P  L  L  L  L + +NK    I +      
Sbjct: 57  AS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK----ITDISALQN 108

Query: 608 FPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMS 667
              LR + L+++  +                           + P             ++
Sbjct: 109 LTNLRELYLNEDNISD--------------------------ISPLAN----------LT 132

Query: 668 NKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNL 727
                         + ++ L +N       + +SN+ GL  L++ ++ +    P  + NL
Sbjct: 133 K-------------MYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP--IANL 176

Query: 728 TDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIP 769
           TDL SL L+ N+     P  L  LT L +F    N  T   P
Sbjct: 177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  144 bits (366), Expect = 6e-37
 Identities = 71/496 (14%), Positives = 160/496 (32%), Gaps = 35/496 (7%)

Query: 73  LDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAAF 131
             ++ S L+ ++  +S      +++ LDL+ N    S+I    +   + L  LNLSS   
Sbjct: 15  EKVTDSSLKQAL--ASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70

Query: 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP 191
                 ++  LS L  LDL++N            +  L     +++ L   +  IS  + 
Sbjct: 71  YE--TLDLESLSTLRTLDLNNN-----------YVQEL-LVGPSIETLHAANNNISR-VS 115

Query: 192 HNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD-ELPTFIGTLGSLKE 250
            +         + L+   +        G  +R+ +LDL  N++          +  +L+ 
Sbjct: 116 CSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGEL 310
           L+L  N +  ++   +   A L+ +DLS N+ L  +     +   + W+SL +N     +
Sbjct: 174 LNLQYNFIY-DVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 311 PASFGNLRSLRTLDVYECKFS-GQIPSSLSNLTHLSFLDF-SLNNFSGKMDLDIFLVNHK 368
             +    ++L   D+    F  G +    S    +  +   ++   +G+ + +  +    
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 369 LLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKI 428
                           +            +S    +   +    +NQ     +D    + 
Sbjct: 290 HYGAYCCEDLPAPFADRLI-ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 429 NGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTG---EIPSWICNLS 485
              V   +     Q    L      L     +    +  +                    
Sbjct: 349 R-TVIDQVTLR-KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQ 406

Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDN 545
           + L+ L         +  +     ++ +   D+  +K +    +N     +    DL+  
Sbjct: 407 SPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466

Query: 546 LLQGRIPRSLANCSNL 561
                +   +    NL
Sbjct: 467 SANATLQELVVREQNL 482

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  143 bits (361), Expect = 3e-36
 Identities = 71/462 (15%), Positives = 143/462 (30%), Gaps = 40/462 (8%)

Query: 165 SLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRL 224
           ++  +       K   + D ++   +        ++  L LSG  L     + L   T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 225 IHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLG 284
             L+LS N L  E      +L +L+ LDL  N +       +    S+E +  + N  + 
Sbjct: 61  ELLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN-IS 112

Query: 285 KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG-QIPSSLSNLTH 343
           +V  S         + LA+N  +       G    ++ LD+   +          ++   
Sbjct: 113 RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 344 LSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSC 403
           L  L+   N     +   +       L  L LS+N+L+ +     +        +SL + 
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVFAK---LKTLDLSSNKLAFMGPEFQSAAG--VTWISLRNN 224

Query: 404 DLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNT 463
            L  I K L+   +LE  DL  N  +              F                  T
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFH-------CGTLRDFFSKNQRVQTV------AKQT 271

Query: 464 VNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKF 523
           V  L   N     +P+     +   E L   +        + +       ++L  Q ++ 
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF------ADRLIALKRKEHALLSGQGSET 325

Query: 524 SGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLP 583
              +          + ID      +  I +          L+     + +   +      
Sbjct: 326 ER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384

Query: 584 DLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKL 625
           +L+  + ++     L    +       L+++     R+    
Sbjct: 385 ELDGTLQQAVGQIELQHATEE---QSPLQLLRAIVKRYEEMY 423

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (344), Expect = 4e-34
 Identities = 71/431 (16%), Positives = 127/431 (29%), Gaps = 66/431 (15%)

Query: 214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE 273
           I     N  R     ++ + L   L +   +  ++KELDL  N LS      +     LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 274 QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQ 333
            ++LS N         L +L+ L  L L +N              S+ TL       S  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV 114

Query: 334 IPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSH 393
             S      +   +  + N  +   DLD    +   + +L L  N +  +          
Sbjct: 115 SCSRGQGKKN---IYLANNKITMLRDLDEGCRSR--VQYLDLKLNEIDTV---------- 159

Query: 394 RFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNF 453
                           +   +   LE L+L  N I   V   ++   ++    L+LS N 
Sbjct: 160 -------------NFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLK---TLDLSSNK 202

Query: 454 LTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWL 513
           L                      +     + +  +  + L  N L   + + L    + L
Sbjct: 203 LA--------------------FMGPEFQSAAG-VTWISLRNNKLVL-IEKALRFSQN-L 239

Query: 514 SILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573
              DL+ N F      +    N  +V  ++   ++    ++   C+       G     D
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 574 IFPSWLGTLPDLNVLILKSNKFHGLIRE--PKTDCGFPKLRIIDLSKNRFTGKLPSMAFQ 631
           +   +   L  L           G   E          + R ID  K ++   +      
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTL 357

Query: 632 CWNAMKVVNAS 642
              A   +   
Sbjct: 358 RKQAKITLEQK 368

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  115 bits (290), Expect = 3e-27
 Identities = 68/475 (14%), Positives = 131/475 (27%), Gaps = 108/475 (22%)

Query: 291 GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFS 350
            N  +     +  +     L +   +  +++ LD+     S    + L+  T L  L+ S
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 351 LNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK 410
            N     +DL+    +   L  L L+ N +  L    S                      
Sbjct: 67  SNVLYETLDLE----SLSTLRTLDLNNNYVQELLVGPS---------------------- 100

Query: 411 FLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSN 470
                  +E L  A+N I+      +     Q   ++ L++N +T               
Sbjct: 101 -------IETLHAANNNISR-----VSCSRGQGKKNIYLANNKITMLR------------ 136

Query: 471 NSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDN 530
                         S  ++ LDL  N +  +    L   SD L  L+LQ+N     +   
Sbjct: 137 -------DLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ 187

Query: 531 LLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLIL 590
           ++    LK +DLS N L   +     + + + ++ L +N++  I    L    +L    L
Sbjct: 188 VVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDL 244

Query: 591 KSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEV 650
           + N FH             +++ +     +   KL     +      + +          
Sbjct: 245 RGNGFH-CGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 651 IPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILS 710
            PF +                                                K   +LS
Sbjct: 301 APFADRLIALK-----------------------------------------RKEHALLS 319

Query: 711 LADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
              +     +     N      +D    ++   I Q  +                
Sbjct: 320 GQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.3 bits (224), Expect = 5e-19
 Identities = 49/363 (13%), Positives = 93/363 (25%), Gaps = 46/363 (12%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF 131
            + L+++ +               +++LDL  N+ D         +  +L +LNL     
Sbjct: 124 NIYLANNKITML--RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP 191
              +  +++  +KL  LDLS N                  KL                + 
Sbjct: 182 Y-DVKGQVV-FAKLKTLDLSSN------------------KLAF--------------MG 207

Query: 192 HNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLS-DELPTFIGTLGSLKE 250
                 + +T +SL    L   I  +L     L H DL  N      L  F      ++ 
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSG-- 308
           +      +      +                           L  L     A     G  
Sbjct: 267 VAK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324

Query: 309 --ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVN 366
              L     N    R +D  + ++   I            L+        ++        
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG--RRA 382

Query: 367 HKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASN 426
           H  L            L  AT   +  +     +   +   + +     + +   D+  +
Sbjct: 383 HAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

Query: 427 KIN 429
           K  
Sbjct: 443 KET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.4 bits (206), Expect = 9e-17
 Identities = 44/245 (17%), Positives = 95/245 (38%), Gaps = 25/245 (10%)

Query: 527 IPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586
           I +    GN  K+  ++D+ L+  +     +  N++ LDL  N +  I  + L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 587 VLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRY 646
           +L L SN     + E         LR +DL+ N    +L         +++ ++A+    
Sbjct: 62  LLNLSSNV----LYETLDLESLSTLRTLDLNNNYVQ-ELLVGP-----SIETLHAANNNI 111

Query: 647 MQEVIPFNEGNG-----IYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDG-EIPTSI 700
               +  + G G     + +  +TM          +    +  + L  N  D        
Sbjct: 112 --SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSR----VQYLDLKLNEIDTVNFAELA 165

Query: 701 SNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVS 760
           ++   L+ L+L  N ++  +   +     L++LDLS+N+ +  +  +      + + ++ 
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 761 DNHFT 765
           +N   
Sbjct: 223 NNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 20/74 (27%), Positives = 30/74 (40%)

Query: 696 IPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLE 755
           I     N    +I  + D+SL   + S   +  +++ LDLS N  S      L   T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 756 FFNVSDNHFTGPIP 769
             N+S N     + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  138 bits (349), Expect = 4e-34
 Identities = 75/392 (19%), Positives = 128/392 (32%), Gaps = 53/392 (13%)

Query: 196 YLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQ 255
             +    L++    L   +P  L     +  L +  N L+  LP        L+ L++  
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSG 90

Query: 256 NNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFG 315
           N L+  LP     L  L      L       P+    L +L    +  N  +  LP    
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLT-SLPVLPP 141

Query: 316 NLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFL 375
            L+    L V + + +  +P+  S L  L   +   N  +    L +       L  L +
Sbjct: 142 GLQE---LSVSDNQLA-SLPALPSELCKLWAYN---NQLT---SLPMLPSG---LQELSV 188

Query: 376 STNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKW 435
           S N+L+ L    S         +   +  LT +P        L+ L ++ N++       
Sbjct: 189 SDNQLASLPTLPSELYK-----LWAYNNRLTSLPALPSG---LKELIVSGNRLTS----- 235

Query: 436 LLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYL-VSNNSLTGEIPSWICNLSNRLESLDLS 494
            L         L +S N LT     P+ +  L V  N LT  +P  + +LS+   +++L 
Sbjct: 236 -LPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSS-ETTVNLE 292

Query: 495 YNNLSGLLPQCLGNFSDWLSILDLQHNKF-SGTIPDNLLKGNILKVIDLSDNLLQGRIPR 553
            N LS    Q L      ++             +           +   + + L      
Sbjct: 293 GNPLSERTLQALRE----ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREG 348

Query: 554 SLANCSNLEFLDLGDNQIRDIFPSWLGTLPDL 585
             A           DN   D F  +L  L + 
Sbjct: 349 EPAPADRWHMFGQEDNA--DAFSLFLDRLSET 378

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  128 bits (324), Expect = 5e-31
 Identities = 66/379 (17%), Positives = 116/379 (30%), Gaps = 95/379 (25%)

Query: 222 TRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNR 281
                L++  + L+  LP  +     +  L +  NNL+  LP     L +L   ++S N+
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTL---EVSGNQ 92

Query: 282 FLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNL 341
            L  +P     L +L   S                   L  L ++  + +  +P     L
Sbjct: 93  -LTSLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPPGL 143

Query: 342 THLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLC 401
                                          L +S N+L                     
Sbjct: 144 QE-----------------------------LSVSDNQL--------------------- 153

Query: 402 SCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHP 461
                 +P        L  L   +N++        L         L++S N L      P
Sbjct: 154 ----ASLPALPSE---LCKLWAYNNQLTS------LPMLPSGLQELSVSDNQLASLPTLP 200

Query: 462 NTVNYL-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQH 520
           + +  L   NN LT  +P+    L    + L +S N L+ L P         L  L +  
Sbjct: 201 SELYKLWAYNNRLT-SLPALPSGL----KELIVSGNRLTSL-PVLPSE----LKELMVSG 250

Query: 521 NKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLG 580
           N+ + ++P        L  + +  N L  R+P SL + S+   ++L  N + +     L 
Sbjct: 251 NRLT-SLPMLP--SG-LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305

Query: 581 TLPDLNVLILKSNKFHGLI 599
            +           +F    
Sbjct: 306 EITSAPGYSGPIIRFDMAG 324

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (299), Expect = 7e-28
 Identities = 77/373 (20%), Positives = 122/373 (32%), Gaps = 60/373 (16%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSL--SYLNLSSA 129
            L++  S L  ++     L    H+  L +  N+   + +P     L +L  S   L+S 
Sbjct: 44  VLNVGESGLT-TL--PDCLPA--HITTLVIPDNNL--TSLPALPPELRTLEVSGNQLTS- 95

Query: 130 AFSGQIPSEILELSKLAYLDLSHNSY-YDPVELRKPSLGN-----LADKLTNLKELVLGD 183
                +P     L +L+            P  L K  +       L      L+EL + D
Sbjct: 96  -----LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD 150

Query: 184 VTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIG 243
             ++S +P      S L  L      L   +P        L  L +S N+L+  LPT   
Sbjct: 151 NQLAS-LPALP---SELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SLPTLPS 201

Query: 244 TL-----------------GSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKV 286
            L                   LKEL +  N L+  LP     L  L    +S NR L  +
Sbjct: 202 ELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPSELKEL---MVSGNR-LTSL 256

Query: 287 PSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSF 346
           P     L     LS+  N  +  LP S  +L S  T+++     S +   +L  +T    
Sbjct: 257 PMLPSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312

Query: 347 LDFSLNNFSGKMD----LDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCS 402
               +  F             L      + +       +   +           A SL  
Sbjct: 313 YSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFL 372

Query: 403 CDLTEIPKFLKNQ 415
             L+E   F+K+ 
Sbjct: 373 DRLSETENFIKDA 385

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  107 bits (268), Expect = 4e-24
 Identities = 72/376 (19%), Positives = 122/376 (32%), Gaps = 93/376 (24%)

Query: 399 SLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFD 458
           ++    LT +P  L    H+  L +  N +        L         L +S N LT   
Sbjct: 46  NVGESGLTTLPDCLPA--HITTLVIPDNNLTS------LPALPPELRTLEVSGNQLTSLP 97

Query: 459 QHPNTVNYL-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILD 517
             P  +  L + +N LT  +P+    L      L +  N L+ L P         L  L 
Sbjct: 98  VLPPGLLELSIFSNPLT-HLPALPSGL----CKLWIFGNQLTSL-PVLPPG----LQELS 147

Query: 518 LQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPS 577
           +  N+ + ++P    +   L  +   +N L   +P      S L+ L + DNQ+  + P+
Sbjct: 148 VSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQLASL-PT 198

Query: 578 WLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMK 637
               L  L      +N+   L   P        L+ + +S NR                 
Sbjct: 199 LPSELYKLWAY---NNRLTSLPALP------SGLKELIVSGNRL---------------- 233

Query: 638 VVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIP 697
                        +P                             L  +++S NR    +P
Sbjct: 234 -----------TSLPVLPSE------------------------LKELMVSGNRLT-SLP 257

Query: 698 TSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFF 757
              S L     LS+  N L   +P  L +L+   +++L  N  S +  Q L E+T    +
Sbjct: 258 MLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313

Query: 758 NVSDNHFTGPIPQGKQ 773
           +     F        +
Sbjct: 314 SGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 5e-19
 Identities = 55/299 (18%), Positives = 110/299 (36%), Gaps = 56/299 (18%)

Query: 484 LSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLS 543
           L+N    L++  + L+  LP CL      ++ L +  N  + ++P    +   L+ +++S
Sbjct: 38  LNNGNAVLNVGESGLTT-LPDCLPA---HITTLVIPDNNLT-SLPALPPE---LRTLEVS 89

Query: 544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPK 603
            N L   +P        L         +  +          L  L +  N+   L   P 
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVLP- 140

Query: 604 TDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYS 663
                P L+ + +S N+    LP++  +    +  + A   +     +P           
Sbjct: 141 -----PGLQELSVSDNQLA-SLPALPSE----LCKLWAYNNQ--LTSLPMLPSGLQ---E 185

Query: 664 LTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSC 723
           L++S+  Q+ S   +P  L  +   +NR    +P   S    L+ L ++ N L   +P  
Sbjct: 186 LSVSDN-QLASLPTLPSELYKLWAYNNRLT-SLPALPSG---LKELIVSGNRL-TSLPVL 239

Query: 724 LGNLTDL-----------------ESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
              L +L                  SL +  N+ + ++P+ L+ L+     N+  N  +
Sbjct: 240 PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.1 bits (148), Expect = 1e-09
 Identities = 41/210 (19%), Positives = 71/210 (33%), Gaps = 52/210 (24%)

Query: 556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIID 615
              +    L++G++ +  + P  L     +  L++  N    L          P+LR ++
Sbjct: 37  CLNNGNAVLNVGESGLTTL-PDCLPA--HITTLVIPDNNLTSL------PALPPELRTLE 87

Query: 616 LSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSY 675
           +S N+ T  LP +              EL         N    +                
Sbjct: 88  VSGNQLT-SLPVLPPGL---------LELSIF-----SNPLTHL---------------- 116

Query: 676 KKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDL 735
             +P  L  + +  N+    +P     L   Q LS++DN L   +P+    L     L  
Sbjct: 117 PALPSGLCKLWIFGNQL-TSLPVLPPGL---QELSVSDNQL-ASLPALPSELC---KLWA 168

Query: 736 SNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
            NN+ +  +P     L  L   +VSDN   
Sbjct: 169 YNNQLT-SLPMLPSGLQEL---SVSDNQLA 194

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  134 bits (339), Expect = 3e-33
 Identities = 98/542 (18%), Positives = 180/542 (33%), Gaps = 66/542 (12%)

Query: 201 TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG 260
             +  S   L   +P  L   T    L++S N +S+   + I +L  L+ L +  N +  
Sbjct: 3   FLVDRSKNGLI-HVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 261 ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDF-SGELPASFGNLRS 319
              +       LE +DLS N+ L K+         L  L L+ N F +  +   FGN+  
Sbjct: 60  LDISVFKFNQELEYLDLSHNK-LVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 320 LRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNR 379
           L+ L +            +++L     L      +  K D +        L      +  
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE-------GLQDFNTESLH 169

Query: 380 LSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDP 439
           +       +N   H    VS+ +    E+          +     S     +    L + 
Sbjct: 170 IVFP----TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

Query: 440 SMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLS 499
           ++ N      S   +     H     + +SN  L G++              D S  +L 
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD---------FRDFDYSGTSLK 276

Query: 500 GLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCS 559
            L            SI  +  + F           + + + + + +  +       +  S
Sbjct: 277 AL------------SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324

Query: 560 NLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKN 619
               LD  +N + D      G L +L  LIL+ N+   L +  +       L+ +D+S+N
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384

Query: 620 RFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIP 679
             +            ++  +N S                        SN      ++ +P
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMS------------------------SNILTDTIFRCLP 420

Query: 680 DILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSC-LGNLTDLESLDLSNN 738
             +  + L SN+    IP  +  L+ LQ L++A N L   +P      LT L+ + L  N
Sbjct: 421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

Query: 739 RF 740
            +
Sbjct: 479 PW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  128 bits (322), Expect = 4e-31
 Identities = 96/496 (19%), Positives = 186/496 (37%), Gaps = 42/496 (8%)

Query: 124 LNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGD 183
           ++ S       +P ++    K   L++S N       + +    ++   L+ L+ L++  
Sbjct: 5   VDRSKNGLI-HVPKDLS--QKTTILNISQNY------ISELWTSDI-LSLSKLRILIISH 54

Query: 184 VTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD-ELPTFI 242
             I         +   L  L LS   L   I         L HLDLSFN      +    
Sbjct: 55  NRIQYLDISVFKFNQELEYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFDALPICKEF 111

Query: 243 GTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKV-PSSLGNL--TQLHWL 299
           G +  LK L L   +L       I +L   + + +    +  K  P  L +     LH +
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 300 SLASNDFSGELPASFGNLRSLR------TLDVYECKFSGQIPSSLSNLTHLSFLDFSLNN 353
              + +F   L  S   + +L        L+  +C +   I + L     LS L  +   
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231

Query: 354 FSGKMDLDIF-LVNHKLLYHLFLSTNRL-SLLTKATSNTTSHRFRAVS---LCSCDLTEI 408
            +    + I  LV H  +++  +S  +L   L     + +    +A+S   + S      
Sbjct: 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

Query: 409 PKFLKNQ-HHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT-----GFDQHPN 462
             ++     ++ + +   +    ++   L    +  F HL+ S+N LT            
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGT--RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 463 TVNYLVSNNSLT--GEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQH 520
               ++  N L    +I      + + L+ LD+S N++S    +   +++  L  L++  
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKS-LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 521 NKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLG 580
           N  + TI   L     +KV+DL  N ++  IP+ +     L+ L++  NQ++ +      
Sbjct: 409 NILTDTIFRCLPPR--IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465

Query: 581 TLPDLNVLILKSNKFH 596
            L  L  + L +N + 
Sbjct: 466 RLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  127 bits (320), Expect = 6e-31
 Identities = 92/470 (19%), Positives = 161/470 (34%), Gaps = 32/470 (6%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
                L +    IS     ++  LS L  L +S   ++    S       L +LDLS NK
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 234 LSDELPTFIGTLGSLKELDLLQNNL-SGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN 292
           L  ++        +LK LDL  N   +  +    GN++ L+ + LS           + +
Sbjct: 81  LV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 293 LTQLH-WLSLASNDFSGELPASFGNLR--SLRTLDVYECKFSGQIPSSLSNLTHLSFLDF 349
           L      L L       E P    +    SL  +     +F   +  S+  + +L   + 
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 350 SLNNFSGKMDLDIFLVNHKL---------LYHLFLSTNRLSLLTKATSNTTSHRFRAVSL 400
                  K    + ++             L ++  + N    + +   +TT   F   ++
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 401 CSCDLTEIPKFLKNQHHLELLDLASNKING-KVPKWLLDPSMQNFGHLNLSHNFLT---- 455
                 +   F  +   L+ L +     +    P+  +     N    N + +       
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317

Query: 456 GFDQHPNTVNYL-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDW-- 512
                 +   +L  SNN LT  +     +L+  LE+L L  N L   L +     +    
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTE-LETLILQMNQLK-ELSKIAEMTTQMKS 375

Query: 513 LSILDLQHNKFSGTIPDNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQI 571
           L  LD+  N  S             L  +++S N+L   I R L     ++ LDL  N+I
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI 433

Query: 572 RDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRF 621
           + I P  +  L  L  L + SN+   +            L+ I L  N +
Sbjct: 434 KSI-PKQVVKLEALQELNVASNQLKSV--PDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (261), Expect = 2e-23
 Identities = 90/500 (18%), Positives = 178/500 (35%), Gaps = 74/500 (14%)

Query: 73  LDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF- 131
           L +S + +Q      S       LE+LDL+ N     +I        +L +L+LS  AF 
Sbjct: 50  LIISHNRIQYL--DISVFKFNQELEYLDLSHNKL--VKISCH--PTVNLKHLDLSFNAFD 103

Query: 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP 191
           +  I  E   +S+L +L LS         L K S+  +A    +   LVLG+        
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTT------HLEKSSVLPIAHLNISKVLLVLGETYGE---K 154

Query: 192 HNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL 251
            +   L    T SL       +    + +++     +L  + +   L           + 
Sbjct: 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL--------EDNKC 206

Query: 252 DLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELP 311
               + L+    N   +  +L  ++ + N F+      L   T + + S+++    G+L 
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR--ILQLVWHTTVWYFSISNVKLQGQLD 264

Query: 312 ASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLY 371
               +                    S ++L  LS      + F               + 
Sbjct: 265 FRDFDY-------------------SGTSLKALSIHQVVSDVFG--FPQSYIYEIFSNMN 303

Query: 372 HLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIP-KFLKNQHHLELLDLASNKING 430
               + +   ++     +  S  F  +   +  LT+   +   +   LE L L  N++  
Sbjct: 304 IKNFTVSGTRMVHMLCPSKIS-PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK- 361

Query: 431 KVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLES 490
                     +     +           Q  +     +S NS++ +     C+ +  L S
Sbjct: 362 ---------ELSKIAEM---------TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403

Query: 491 LDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGR 550
           L++S N L+  + +CL      + +LDL  NK   +IP  ++K   L+ ++++ N L+  
Sbjct: 404 LNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-S 458

Query: 551 IPR-SLANCSNLEFLDLGDN 569
           +P       ++L+ + L  N
Sbjct: 459 VPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 77.2 bits (190), Expect = 8e-15
 Identities = 58/343 (16%), Positives = 105/343 (30%), Gaps = 29/343 (8%)

Query: 446 HLNLSHNFLTG-----FDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSG 500
            LN+S N+++                ++S+N +   +   +   +  LE LDLS+N L  
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK 83

Query: 501 LLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI--LKVIDLSDNLLQGRIPRSLANC 558
           +      N    L  LDL  N F   +P     GN+  LK + LS   L+      +A+ 
Sbjct: 84  ISCHPTVN----LKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 559 SNLE-FLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLS 617
           +  +  L LG+       P  L      ++ I+             +      L + ++ 
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 618 KNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYD------------YSLT 665
                 K                 S L        +N    I               ++ 
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 666 MSNKGQMMSYKKIPDILTAVI---LSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPS 722
           +  +     +      L A+    + S+ F             + I +   +        
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 723 CLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
           C   ++    LD SNN  +  + +    LT LE   +  N   
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 678 IPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSN 737
           +    T + +S N       + I +L  L+IL ++ N +     S      +LE LDLS+
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 738 NRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQF 774
           N+         V L  L   ++S N F   +P  K+F
Sbjct: 79  NKLVKISCHPTVNLKHL---DLSFNAFDA-LPICKEF 111

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  131 bits (331), Expect = 5e-33
 Identities = 75/424 (17%), Positives = 132/424 (31%), Gaps = 91/424 (21%)

Query: 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN 232
                ++ +   T           L++   ++     +R    + L +  ++  L+L+  
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79

Query: 233 KLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN 292
           ++ +          ++++L +  N +    P+   N+  L  + L  N           N
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 293 LTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352
             +L  LS+++N+       +F    SL+ L +   + +                   L+
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----------------HVDLS 183

Query: 353 NFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412
                            L+H  +S N LS L    +                        
Sbjct: 184 LIPS-------------LFHANVSYNLLSTLAIPIA------------------------ 206

Query: 413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNS 472
                +E LD + N IN      +  P       L L HN LT                 
Sbjct: 207 -----VEELDASHNSINV-----VRGPVNVELTILKLQHNNLTD---------------- 240

Query: 473 LTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLL 532
                 +W+ N    L  +DLSYN L  ++          L  L + +N+    +     
Sbjct: 241 -----TAWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQR-LERLYISNNRLV-ALNLYGQ 292

Query: 533 KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS 592
               LKV+DLS N L   + R+      LE L L  N I  +      T   L  L L  
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKL---STHHTLKNLTLSH 348

Query: 593 NKFH 596
           N + 
Sbjct: 349 NDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  129 bits (325), Expect = 3e-32
 Identities = 79/433 (18%), Positives = 126/433 (29%), Gaps = 93/433 (21%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK 249
           I  NL Y      + +               +     +    + +       + +   ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE 309
            L+L    +      +     +++++ +  N      P    N+  L  L L  ND S  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 310 LPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKL 369
               F N   L TL +           +    T L  L  S N  +  +DL +       
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI----PS 187

Query: 370 LYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKIN 429
           L+H  +S N LS L    +                             +E LD + N IN
Sbjct: 188 LFHANVSYNLLSTLAIPIA-----------------------------VEELDASHNSIN 218

Query: 430 GKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLE 489
                 +  P       L L HN LT                       +W+ N    L 
Sbjct: 219 V-----VRGPVNVELTILKLQHNNLTD---------------------TAWLLNYPG-LV 251

Query: 490 SLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQG 549
            +DLSYN L  ++          L  L + +N+    +         LKV+DLS N L  
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQR-LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL- 308

Query: 550 RIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFP 609
            + R+      LE L L  N I  +  S                                
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIVTLKLS-----------------------------THH 339

Query: 610 KLRIIDLSKNRFT 622
            L+ + LS N + 
Sbjct: 340 TLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (312), Expect = 2e-30
 Identities = 74/369 (20%), Positives = 127/369 (34%), Gaps = 32/369 (8%)

Query: 88  SSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILE-LSKLA 146
           S+L        + +     D      E I L++   +   ++    ++P+ +L+   ++ 
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYF-GFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVE 72

Query: 147 YLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLS 206
            L+L+        E+   +          +++L +G   I    PH    +  LT L L 
Sbjct: 73  LLNLNDLQI---EEIDTYAFAYA----HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 207 GCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI 266
             DL         N  +L  L +S N L            SL+ L L  N L+  +   +
Sbjct: 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--L 182

Query: 267 GNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
             + SL   ++S N       S+L     +  L  + N  +  +         L  L + 
Sbjct: 183 SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQ 234

Query: 327 ECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKA 386
               +    + L N   L  +D S N    K+    F V  + L  L++S NRL  L   
Sbjct: 235 HNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPF-VKMQRLERLYISNNRLVALNLY 290

Query: 387 TSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGH 446
                +   + + L    L  + +       LE L L  N I       L   +     +
Sbjct: 291 GQPIPT--LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-----VTLKLSTHHTLKN 343

Query: 447 LNLSHNFLT 455
           L LSHN   
Sbjct: 344 LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (310), Expect = 2e-30
 Identities = 67/355 (18%), Positives = 124/355 (34%), Gaps = 25/355 (7%)

Query: 280 NRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLS 339
                 + S+L      + + +               L + + +            + L 
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 66

Query: 340 NLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVS 399
           +   +  L+ +      ++D   F      +  L++  N +  L              + 
Sbjct: 67  SFRQVELLNLNDLQIE-EIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPL-LTVLV 123

Query: 400 LCSCDLTEIPKFL-KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFD 458
           L   DL+ +P+ +  N   L  L +++N +  ++          +  +L LS N LT  D
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQA-TTSLQNLQLSSNRLTHVD 181

Query: 459 QH--PNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSIL 516
               P+  +  VS N L+  +   I      +E LD S+N+++ +           L+IL
Sbjct: 182 LSLIPSLFHANVSYNLLS-TLAIPI-----AVEELDASHNSINVVRGPVNVE----LTIL 231

Query: 517 DLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP 576
            LQHN    T    LL    L  +DLS N L+  +         LE L + +N++  +  
Sbjct: 232 KLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-N 288

Query: 577 SWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQ 631
            +   +P L VL L  N    +    +    F +L  + L  N     L      
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHV---ERNQPQFDRLENLYLDHNSIV-TLKLSTHH 339

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (302), Expect = 2e-29
 Identities = 65/363 (17%), Positives = 125/363 (34%), Gaps = 40/363 (11%)

Query: 73  LDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAAF 131
            D+        +        L + + +    +     ++P  ++ +   +  LNL+    
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 81

Query: 132 SGQIPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGNLA----DKLTNLKELVLGDVTI 186
             +I +        +  L +  N           ++  L       +  L  LVL    +
Sbjct: 82  E-EIDTYAFAYAHTIQKLYMGFN-----------AIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 187 SSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLG 246
           SS           LTTLS+S  +L      +    T L +L LS N+L+  +   +  + 
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 186

Query: 247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDF 306
           SL   ++  N LS     ++    ++E++D S N  +  V   +    +L  L L  N+ 
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNL 238

Query: 307 SGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVN 366
           + +      N   L  +D+   +    +      +  L  L  S N       L+++   
Sbjct: 239 T-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---ALNLYGQP 293

Query: 367 HKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASN 426
              L  L LS N L  + +            + L    +  +   L   H L+ L L+ N
Sbjct: 294 IPTLKVLDLSHNHLLHVERNQPQFDR--LENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349

Query: 427 KIN 429
             +
Sbjct: 350 DWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (289), Expect = 1e-27
 Identities = 77/448 (17%), Positives = 146/448 (32%), Gaps = 82/448 (18%)

Query: 359 DLDIFLVNHKLLYHLFLSTNRLSLLTK----ATSNTTSHRFRAVSLCSCDLTEIPK-FLK 413
             +   ++  L Y        + + T+       + T +  + V+  +  + ++P   L 
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 66

Query: 414 NQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG-----FDQHPNTVNYLV 468
           +   +ELL+L   +I  ++  +           L +  N +       F   P     ++
Sbjct: 67  SFRQVELLNLNDLQIE-EIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
             N L+  +P  I + + +L +L +S NNL  +        +  L  L L  N+ +  + 
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLT-HVD 181

Query: 529 DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVL 588
            +L+    L   ++S NLL      +LA    +E LD   N I  +         +L +L
Sbjct: 182 LSLIPS--LFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRG---PVNVELTIL 231

Query: 589 ILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQ 648
            L+ N     + +      +P L  +DLS N    K+    F             L  + 
Sbjct: 232 KLQHNN----LTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFV--------KMQRLERLY 278

Query: 649 EVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQI 708
                                                 +S+NR    +      +  L++
Sbjct: 279 --------------------------------------ISNNRLV-ALNLYGQPIPTLKV 299

Query: 709 LSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPI 768
           L L+ N L  H+         LE+L L +N     +         L+   +S N +    
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD-CN 354

Query: 769 PQGKQFATFDKTSFDGNSGLCGRPLSSE 796
                F    + + D     C      E
Sbjct: 355 SLRALFRNVARPAVDDADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 41/177 (23%)

Query: 84  INSSSSLFKLVHLEWLDLAFNDFDGSEIPPEI-INLSSLSYLNLSSAAFSGQIPSEILEL 142
           +  ++ L     L  +DL++N+    +I     + +  L  L +S+      +      +
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

Query: 143 SKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTT 202
             L  LDLSHN                   L +              +  N      L  
Sbjct: 295 PTLKVLDLSHN------------------HLLH--------------VERNQPQFDRLEN 322

Query: 203 LSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLS 259
           L L    +   +   L     L +L LS N         +    ++    +   +  
Sbjct: 323 LYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 9e-04
 Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 17/136 (12%)

Query: 86  SSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKL 145
                 K+  LE L ++ N      +      + +L  L+LS       +     +  +L
Sbjct: 264 MYHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320

Query: 146 AYLDLSHNSYYDPVELRKPSLGNL-ADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLS 204
             L L HN           S+  L       LK L L                 ++   +
Sbjct: 321 ENLYLDHN-----------SIVTLKLSTHHTLKNLTLSHNDWDC--NSLRALFRNVARPA 367

Query: 205 LSGCDLRGRIPSSLGN 220
           +   D   +I   L +
Sbjct: 368 VDDADQHCKIDYQLEH 383

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (315), Expect = 1e-31
 Identities = 53/304 (17%), Positives = 109/304 (35%), Gaps = 28/304 (9%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAA 130
              ++ S L+ ++  +S      +++ LDL+ N    S+I    +   + L  LNLSS  
Sbjct: 14  IEKVTDSSLKQAL--ASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNV 69

Query: 131 FSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPI 190
                  ++  LS L  LDL++N            +  L     +++ L   +  IS  +
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNN-----------YVQEL-LVGPSIETLHAANNNISR-V 114

Query: 191 PHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD-ELPTFIGTLGSLK 249
             +         + L+   +        G  +R+ +LDL  N++          +  +L+
Sbjct: 115 SCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE 309
            L+L  N +  ++   +   A L+ +DLS N+ L  +     +   + W+SL +N     
Sbjct: 173 HLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 310 LPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKL 369
           +  +    ++L   D+    F            +      +          +        
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 370 LYHL 373
           L H 
Sbjct: 288 LGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (312), Expect = 3e-31
 Identities = 59/311 (18%), Positives = 110/311 (35%), Gaps = 17/311 (5%)

Query: 165 SLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRL 224
           ++  +       K   + D ++   +        ++  L LSG  L     + L   T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 225 IHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLG 284
             L+LS N L  E      +L +L+ LDL  N +       +    S+E +  + N  + 
Sbjct: 61  ELLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN-IS 112

Query: 285 KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG-QIPSSLSNLTH 343
           +V  S         + LA+N  +       G    ++ LD+   +          ++   
Sbjct: 113 RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 344 LSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSC 403
           L  L+   N     +   +       L  L LS+N+L+ +     +        +SL + 
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVFAK---LKTLDLSSNKLAFMGPEFQSAAG--VTWISLRNN 224

Query: 404 DLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNT 463
            L  I K L+   +LE  DL  N  +    +     + +       +   LTG ++   T
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 464 VNYLVSNNSLT 474
           V  L    +  
Sbjct: 285 VPTLGHYGAYC 295

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  119 bits (301), Expect = 1e-29
 Identities = 61/378 (16%), Positives = 111/378 (29%), Gaps = 74/378 (19%)

Query: 197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQN 256
            +      ++   L+  + S   +   +  LDLS N LS      +     L+ L+L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 257 NLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN 316
            L  E    + +L++L  +DL+ N         L     +  L  A+N+ S  +  S   
Sbjct: 69  VLY-ETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS--R 118

Query: 317 LRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLS 376
            +  + + +   K +          + + +LD  LN     ++      +   L HL L 
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQ 177

Query: 377 TNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWL 436
            N +  +                                  L+ LDL+SNK+        
Sbjct: 178 YNFIYDVKGQV-----------------------VFAK---LKTLDLSSNKLAF------ 205

Query: 437 LDPSMQNFGHL---NLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDL 493
           + P  Q+   +   +L +N L                      I   +    N LE  DL
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV--------------------LIEKALRFSQN-LEHFDL 244

Query: 494 SYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPR 553
             N       +    FS    +  +           N  +  +  +              
Sbjct: 245 RGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC-----E 297

Query: 554 SLANCSNLEFLDLGDNQI 571
            L        + LG +  
Sbjct: 298 DLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (299), Expect = 2e-29
 Identities = 63/372 (16%), Positives = 113/372 (30%), Gaps = 63/372 (16%)

Query: 214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE 273
           I     N  R     ++ + L   L +   +  ++KELDL  N LS      +     LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 274 QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQ 333
            ++LS N         L +L+ L  L L +N              S+ TL       S  
Sbjct: 62  LLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV 114

Query: 334 IPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSH 393
             S      +   +  + N  +   DLD    +   + +L L  N +  +          
Sbjct: 115 SCSRGQGKKN---IYLANNKITMLRDLDEGCRSR--VQYLDLKLNEIDTV---------- 159

Query: 394 RFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNF 453
                           +   +   LE L+L  N I   V   ++   ++    L+LS N 
Sbjct: 160 -------------NFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLK---TLDLSSNK 202

Query: 454 LTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWL 513
           L                      +     + +  +  + L  N L   + + L    + L
Sbjct: 203 LA--------------------FMGPEFQSAAG-VTWISLRNNKLVL-IEKALRFSQN-L 239

Query: 514 SILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573
              DL+ N F              +V  ++   ++    ++   C+       G     D
Sbjct: 240 EHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 574 IFPSWLGTLPDL 585
           +   +   L  L
Sbjct: 299 LPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (282), Expect = 3e-27
 Identities = 50/291 (17%), Positives = 96/291 (32%), Gaps = 24/291 (8%)

Query: 111 IPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLA 170
           I     N +      ++ ++    + S       +  LDLS N      ++    L    
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL---SQISAADLAP-- 56

Query: 171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLS 230
              T L+ L L    +   +   L  LS+L TL L+   +       L     +  L  +
Sbjct: 57  --FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAA 107

Query: 231 FNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLG-KVPSS 289
            N +S  +          K + L  N ++       G  + ++ +DL LN          
Sbjct: 108 NNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 290 LGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDF 349
             +   L  L+L  N    ++         L+TLD+   K +  +     +   ++++  
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 350 SLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSL 400
             N       ++  L   + L H  L  N     T     + + R + V+ 
Sbjct: 222 RNNKLV---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (261), Expect = 2e-24
 Identities = 60/358 (16%), Positives = 110/358 (30%), Gaps = 88/358 (24%)

Query: 292 NLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSL 351
           N  +     +  +     L +   +  +++ LD+     S    + L+  T L  L+ S 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 352 NNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF 411
           N     +DL+    +   L  L L+ N +  L    S                       
Sbjct: 68  NVLYETLDLE----SLSTLRTLDLNNNYVQELLVGPS----------------------- 100

Query: 412 LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNN 471
                 +E L  A+N I+ +V         Q   ++ L++N +T                
Sbjct: 101 ------IETLHAANNNIS-RVS----CSRGQGKKNIYLANNKITMLR------------- 136

Query: 472 SLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNL 531
                        S  ++ LDL  N +  +    L   SD L  L+LQ+N     +   +
Sbjct: 137 ------DLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV 188

Query: 532 LKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILK 591
           +    LK +DLS N L   +     + + + ++ L +N++  I                 
Sbjct: 189 VFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI----------------- 229

Query: 592 SNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQE 649
                      K       L   DL  N F        F     ++ V    ++ +  
Sbjct: 230 ----------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (260), Expect = 2e-24
 Identities = 62/298 (20%), Positives = 106/298 (35%), Gaps = 41/298 (13%)

Query: 468 VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTI 527
           V+++SL   + S   +  N ++ LDLS N LS +    L  F+  L +L+L  N    T+
Sbjct: 17  VTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETL 74

Query: 528 PDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNV 587
               L    L+ +DL++N +Q      L    ++E L   +N I  +  S          
Sbjct: 75  DLESLST--LRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCS---RGQGKKN 124

Query: 588 LILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYM 647
           + L +NK   L      +    +++ +DL  N       +      + ++ +N       
Sbjct: 125 IYLANNKITML--RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ----- 177

Query: 648 QEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQ 707
                    N IYD    +               L  + LSSN+    +     +  G+ 
Sbjct: 178 --------YNFIYDVKGQVVFAK-----------LKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 708 ILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
            +SL +N L   I   L    +LE  DL  N F     +            V+     
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (255), Expect = 1e-23
 Identities = 54/282 (19%), Positives = 103/282 (36%), Gaps = 43/282 (15%)

Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI-LKVIDLSD 544
           NR +   ++ ++L   L     +  + +  LDL  N  S  I    L     L++++LS 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 545 NLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKT 604
           N+L       L + S L  LDL +N ++++        P +  L   +N    +      
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS--- 117

Query: 605 DCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQ-EVIPFNEGNGIYDYS 663
                  + I L+ N+ T  L  +   C + ++ ++   L+  + + + F E       S
Sbjct: 118 --RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLD---LKLNEIDTVNFAELAA----S 167

Query: 664 LTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSC 723
                             L  + L  N    ++   +     L+ L L+ N L   +   
Sbjct: 168 SDT---------------LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPE 209

Query: 724 LGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
             +   +  + L NN+    I + L     LE F++  N F 
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 7e-22
 Identities = 50/278 (17%), Positives = 92/278 (33%), Gaps = 27/278 (9%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF 131
            L+LSS+     +  +  L  L  L  LDL  N     E+        S+  L+ ++   
Sbjct: 62  LLNLSSN----VLYETLDLESLSTLRTLDLNNNYV--QELLV----GPSIETLHAANNNI 111

Query: 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISS-PI 190
           S ++            + L++N       LR    G      + ++ L L    I +   
Sbjct: 112 S-RVSCSR--GQGKKNIYLANNKI---TMLRDLDEGC----RSRVQYLDLKLNEIDTVNF 161

Query: 191 PHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE 250
                   +L  L+L    +   +   +    +L  LDLS NKL+  +     +   +  
Sbjct: 162 AELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW 218

Query: 251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRF-LGKVPSSLGNLTQLHWLSLASNDFSGE 309
           + L  N L   +  ++    +LE  DL  N F  G +        ++  ++  +      
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 310 LPASFGNLRSLRTLDVYECK-FSGQIPSSLSNLTHLSF 346
                  + +L     Y C+         L  L H   
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 44/245 (17%), Positives = 95/245 (38%), Gaps = 25/245 (10%)

Query: 527 IPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586
           I +    GN  K+  ++D+ L+  +     +  N++ LDL  N +  I  + L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 587 VLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRY 646
           +L L SN     + E         LR +DL+ N    +L         +++ ++A+    
Sbjct: 62  LLNLSSNV----LYETLDLESLSTLRTLDLNNNYVQ-ELLVGP-----SIETLHAANNNI 111

Query: 647 MQEVIPFNEGNG-----IYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDG-EIPTSI 700
               +  + G G     + +  +TM          +    +  + L  N  D        
Sbjct: 112 --SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSR----VQYLDLKLNEIDTVNFAELA 165

Query: 701 SNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVS 760
           ++   L+ L+L  N ++  +   +     L++LDLS+N+ +  +  +      + + ++ 
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 761 DNHFT 765
           +N   
Sbjct: 223 NNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 20/74 (27%), Positives = 30/74 (40%)

Query: 696 IPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLE 755
           I     N    +I  + D+SL   + S   +  +++ LDLS N  S      L   T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 756 FFNVSDNHFTGPIP 769
             N+S N     + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  128 bits (323), Expect = 6e-31
 Identities = 78/383 (20%), Positives = 128/383 (33%), Gaps = 43/383 (11%)

Query: 214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE 273
           I S+L        + +              TL + K +    + +       + +   +E
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 274 QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQ 333
            ++L+  +       +      +  L +  N      P  F N+  L  L +     S  
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138

Query: 334 IPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSH 393
                 N   L+ L  S NN   +++ D F      L +L LS+NRL+ +      +   
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTF-QATTSLQNLQLSSNRLTHV----DLSLIP 192

Query: 394 RFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNF 453
                ++    L+ +         +E LD + N IN      +  P       L L HN 
Sbjct: 193 SLFHANVSYNLLSTLA----IPIAVEELDASHNSINV-----VRGPVNVELTILKLQHNN 243

Query: 454 LTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWL 513
           LT                       +W+ N    L  +DLSYN L  ++          L
Sbjct: 244 LTD---------------------TAWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQR-L 280

Query: 514 SILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573
             L + +N+    +         LKV+DLS N L   + R+      LE L L  N I  
Sbjct: 281 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338

Query: 574 IFPSWLGTLPDLNVLILKSNKFH 596
           +  S   TL +L    L  N + 
Sbjct: 339 LKLSTHHTLKNLT---LSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  126 bits (317), Expect = 4e-30
 Identities = 85/510 (16%), Positives = 162/510 (31%), Gaps = 36/510 (7%)

Query: 261 ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSL 320
            + +++        V + +             L     ++  ++       A   + R +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 321 RTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRL 380
             L++ + +       + +    +  L    N     +   +F  N  LL  L L  N L
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVF-QNVPLLTVLVLERNDL 135

Query: 381 SLLTKATSNTTSHRFRAVSLCSCDLTEIPK-FLKNQHHLELLDLASNKINGKVPKWLLDP 439
           S L +   + T      +S+ + +L  I     +    L+ L L+SN++   V   L+  
Sbjct: 136 SSLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI-- 191

Query: 440 SMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLS 499
              +  H N+S+N L+             S+NS+   +      ++  L  L L +NNL+
Sbjct: 192 --PSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRG---PVNVELTILKLQHNNLT 245

Query: 500 GLLPQCLGNFSD--WLSILDLQHNKFSGTIPDNLLKGNI-LKVIDLSDNLLQGRIPRSLA 556
                      +   L  +DL +N+    I  +       L+ + +S+N L   +     
Sbjct: 246 D-----TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 557 NCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDL 616
               L+ LDL  N +  +          L  L L  N    L            L+ + L
Sbjct: 299 PIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-----KLSTHHTLKNLTL 352

Query: 617 SKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYK 676
           S N +        F+      V +A +       I +   +G+           +++ Y 
Sbjct: 353 SHNDWDCNSLRALFRNVARPAVDDADQ----HCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

Query: 677 KIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHG-HIPSCLGNLTDLESLDL 735
            +  ++  V  +  R       +        I       L G        N    E   L
Sbjct: 409 ALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQL 468

Query: 736 SNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
           +N +   Q  Q L  L      N+      
Sbjct: 469 TNEQI--QQEQLLQGLHAEIDTNLRRYRLP 496

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (306), Expect = 7e-29
 Identities = 80/466 (17%), Positives = 150/466 (32%), Gaps = 55/466 (11%)

Query: 109 SEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168
             I   +        +++           E + L+    +   +++      +RK     
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST------MRKLPAAL 70

Query: 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLD 228
           L      ++ L L D+ I     +   Y  ++  L +    +R   P    N+  L  L 
Sbjct: 71  LDS-FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 229 LSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPS 288
           L  N LS            L  L +  NNL     ++     SL+ + LS NR L  V  
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD- 187

Query: 289 SLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLD 348
            L  +  L   +++ N  S     +     ++  LD      +  +   +     L+ L 
Sbjct: 188 -LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILK 238

Query: 349 FSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEI 408
              NN +   D     +N+  L  + LS N L  +          R   + + +  L  +
Sbjct: 239 LQHNNLT---DTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLVAL 293

Query: 409 PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLV 468
             + +    L++LDL+ N +   V +    P      +L L HN +              
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQ--PQFDRLENLYLDHNSIV------------- 337

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
                   +     +  + L++L LS+N+        L      ++   +        I 
Sbjct: 338 -------TLKL---STHHTLKNLTLSHNDWDCN---SLRALFRNVARPAVDDADQHCKID 384

Query: 529 DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
             L  G   K    SD     R+ + +A  S +E +     +    
Sbjct: 385 YQLEHGLCCKE---SDKPYLDRLLQYIALTSVVEKVQRAQGRCSAT 427

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (297), Expect = 1e-27
 Identities = 83/529 (15%), Positives = 168/529 (31%), Gaps = 51/529 (9%)

Query: 73  LDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAAF 131
            D+        +        L + + +    +     ++P  ++ +   +  LNL+    
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 87

Query: 132 SGQIPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGNLA----DKLTNLKELVLGDVTI 186
             +I +        +  L +  N           ++  L       +  L  LVL    +
Sbjct: 88  E-EIDTYAFAYAHTIQKLYMGFN-----------AIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 187 SSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLG 246
           SS           LTTLS+S  +L      +    T L +L LS N+L+  +   +  + 
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 192

Query: 247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDF 306
           SL   ++  N LS     ++    ++E++D S N  +  V   +    +L  L L  N+ 
Sbjct: 193 SLFHANVSYNLLS-----TLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNL 244

Query: 307 SGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVN 366
           + +      N   L  +D+   +    +      +  L  L  S N       L+++   
Sbjct: 245 T-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---ALNLYGQP 299

Query: 367 HKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASN 426
              L  L LS N L  + +            + L    +  +   L   H L+ L L+ N
Sbjct: 300 IPTLKVLDLSHNHLLHVERNQPQFDR--LENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355

Query: 427 KINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSN 486
             +    + L           N++   +   DQH    +Y + +     E      +   
Sbjct: 356 DWDCNSLRALF---------RNVARPAVDDADQHCKI-DYQLEHGLCCKESDKPYLDRLL 405

Query: 487 RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNL 546
           +  +L      +     +C    +         +    G +P    +    +V +L    
Sbjct: 406 QYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAE- 464

Query: 547 LQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKF 595
           +Q      +     L+ L    +     +      L   +  + K    
Sbjct: 465 VQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTH 513

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 72.3 bits (177), Expect = 4e-13
 Identities = 47/296 (15%), Positives = 83/296 (28%), Gaps = 77/296 (26%)

Query: 470 NNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD 529
             ++    P + C  SN          ++          F D    + L +         
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFED----ITLNN--------- 52

Query: 530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLI 589
                   K++   ++ ++      L +   +E L+L D QI +I          +  L 
Sbjct: 53  -------QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY 105

Query: 590 LKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQE 649
           +  N    L   P      P L ++ L +N  +  LP   F                   
Sbjct: 106 MGFNAIRYL--PPHVFQNVPLLTVLVLERNDLS-SLPRGIFH------------------ 144

Query: 650 VIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQIL 709
                        +                  LT + +S+N  +     +      LQ L
Sbjct: 145 -------------NTPK---------------LTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 710 SLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
            L+ N L  H+   L  +  L   ++S N  S      L     +E  + S N   
Sbjct: 177 QLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 61/375 (16%), Positives = 115/375 (30%), Gaps = 28/375 (7%)

Query: 84  INSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAAFSGQIPSEILEL 142
           +  ++ L     L  +DL++N+    +I       +  L  L +S+      +      +
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 300

Query: 143 SKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTT 202
             L  LDLSHN            +     +   L+ L L   +I + +   L+   +L  
Sbjct: 301 PTLKVLDLSHN--------HLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKN 349

Query: 203 LSLSG----CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNL 258
           L+LS     C+    +  ++     +   D    K+  +L   +    S K    L   L
Sbjct: 350 LTLSHNDWDCNSLRALFRNVARP-AVDDADQHC-KIDYQLEHGLCCKESDKP--YLDRLL 405

Query: 259 SGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLR 318
                 S+       Q   S    +  V S    +TQ   + L  N+   +L A    LR
Sbjct: 406 QYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNE---QLEAEVNELR 462

Query: 319 S--LRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLS 376
           +   +  +    +            T+L       +  +   D    +  H      F  
Sbjct: 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKL 522

Query: 377 TNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWL 436
               +  T+A +             + +     K  K     +   L   K+     K  
Sbjct: 523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582

Query: 437 LDPSMQNFGHLNLSH 451
            +P  +   H +  H
Sbjct: 583 RNPDTRRVSHHHHHH 597

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (317), Expect = 1e-30
 Identities = 68/366 (18%), Positives = 123/366 (33%), Gaps = 55/366 (15%)

Query: 275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI 334
           V     +    VP  +   T+   L L  N         F +   L  L++ E   S   
Sbjct: 16  VLCH-RKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 335 PSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHR 394
           P + +NL +L  L    N     + L +F     L   L +S N++ +L           
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLT-KLDISENKIVILL---------- 120

Query: 395 FRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFL 454
                             ++ ++L+ L++  N +   +        + +   L L    L
Sbjct: 121 --------------DYMFQDLYNLKSLEVGDNDLV-YISHRAFSG-LNSLEQLTLEKCNL 164

Query: 455 TGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLS 514
           T                         + +L   L  L L + N++ +           L 
Sbjct: 165 TSIP-------------------TEALSHLHG-LIVLRLRHLNINAIRDYSFKRLYR-LK 203

Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
           +L++ H  +  T+  N L G  L  + ++   L      ++ +   L FL+L  N I  I
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 575 FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWN 634
             S L  L  L  + L   +   +  EP    G   LR++++S N+ T  L    F    
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLAVV--EPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVG 320

Query: 635 AMKVVN 640
            ++ + 
Sbjct: 321 NLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (311), Expect = 7e-30
 Identities = 68/322 (21%), Positives = 127/322 (39%), Gaps = 15/322 (4%)

Query: 134 QIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHN 193
            +P  I   ++   LDL  N       L +    +      +L+EL L +  +S+  P  
Sbjct: 25  AVPEGIP--TETRLLDLGKNRI---KTLNQDEFASF----PHLEELELNENIVSAVEPGA 75

Query: 194 LTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDL 253
              L +L TL L    L+         ++ L  LD+S NK+   L      L +LK L++
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 254 LQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPAS 313
             N+L      +   L SLEQ+ L           +L +L  L  L L   + +     S
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 314 FGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHL 373
           F  L  L+ L++    +   +  +     +L+ L  +  N +  +       +   L  L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAV-RHLVYLRFL 253

Query: 374 FLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF-LKNQHHLELLDLASNKINGKV 432
            LS N +S + + +      R + + L    L  +  +  +  ++L +L+++ N++   +
Sbjct: 254 NLSYNPISTI-EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TL 311

Query: 433 PKWLLDPSMQNFGHLNLSHNFL 454
            + +    + N   L L  N L
Sbjct: 312 EESVFHS-VGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (309), Expect = 1e-29
 Identities = 79/401 (19%), Positives = 132/401 (32%), Gaps = 80/401 (19%)

Query: 198 SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN 257
           +    +          +P  +   TR   LDL  N++         +   L+EL+L +N 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGIPTETR--LLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 258 LSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
           +S   P +  NL +L  + L  NR           L+ L  L ++ N     L   F +L
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLST 377
            +L++L+V +         + S L  L  L     N                        
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN------------------------ 163

Query: 378 NRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF-LKNQHHLELLDLASNKINGKVPKWL 436
                                      LT IP   L + H L +L L    IN  +  + 
Sbjct: 164 ---------------------------LTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYS 195

Query: 437 LDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYN 496
               +     L +SH                         +        N L SL +++ 
Sbjct: 196 FKR-LYRLKVLEISH-------------------WPYLDTMTPNCLYGLN-LTSLSITHC 234

Query: 497 NLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI-LKVIDLSDNLLQGRIPRSL 555
           NL+ +    + +    L  L+L +N  S TI  ++L   + L+ I L    L    P + 
Sbjct: 235 NLTAVPYLAVRHLVY-LRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
              + L  L++  NQ+  +  S   ++ +L  LIL SN   
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  121 bits (306), Expect = 3e-29
 Identities = 78/340 (22%), Positives = 132/340 (38%), Gaps = 29/340 (8%)

Query: 56  CSWDG--VQCNENT---------GHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFN 104
           CS     V C+                 LDL  + ++ ++ +        HLE L+L  N
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIK-TL-NQDEFASFPHLEELELNEN 66

Query: 105 DFDGSEIPPEI-INLSSLSYLNLSSAAFSGQIPSEILE-LSKLAYLDLSHNSYYDPVELR 162
               S + P    NL +L  L L S      IP  +   LS L  LD+S N      ++ 
Sbjct: 67  IV--SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISEN------KIV 117

Query: 163 KPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNIT 222
                   D L NLK L +GD  +        + L+SL  L+L  C+L      +L ++ 
Sbjct: 118 ILLDYMFQD-LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 223 RLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRF 282
            LI L L    ++         L  LK L++        +  +     +L  + ++    
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN- 235

Query: 283 LGKVPS-SLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNL 341
           L  VP  ++ +L  L +L+L+ N  S    +    L  L+ + +   + +   P +   L
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295

Query: 342 THLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLS 381
            +L  L+ S N  +  ++  +F      L  L L +N L+
Sbjct: 296 NYLRVLNVSGNQLT-TLEESVFHSVGN-LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 2e-28
 Identities = 71/398 (17%), Positives = 123/398 (30%), Gaps = 82/398 (20%)

Query: 226 HLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGK 285
            +     +    +P  I T    + LDL +N +     +   +   LE+++L+ N     
Sbjct: 15  AVLCHRKRFV-AVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 286 VPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLS 345
            P +  NL  L  L L SN         F  L +L  LD+ E K    +     +L +L 
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 346 FLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL 405
            L+                          +  N L  ++                     
Sbjct: 132 SLE--------------------------VGDNDLVYISHRA------------------ 147

Query: 406 TEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVN 465
                     + LE L L    +     + L    +     L L H  +           
Sbjct: 148 ------FSGLNSLEQLTLEKCNLTSIPTEALSH--LHGLIVLRLRHLNIN---------- 189

Query: 466 YLVSNNSLTGEIPSWICNLSNRLESLDLSYNN-LSGLLPQCLGNFSDWLSILDLQHNKFS 524
                      I  +      RL+ L++S+   L  + P CL   +  L+ L + H   +
Sbjct: 190 ----------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN--LTSLSITHCNLT 237

Query: 525 GTIPDNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLP 583
             +P   ++  + L+ ++LS N +       L     L+ + L   Q+  + P     L 
Sbjct: 238 -AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 584 DLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRF 621
            L VL +  N+   L  E         L  + L  N  
Sbjct: 297 YLRVLNVSGNQLTTL--EESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (284), Expect = 2e-26
 Identities = 62/330 (18%), Positives = 119/330 (36%), Gaps = 23/330 (6%)

Query: 446 HLNLSHNFLTGFDQH--PNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP 503
            +           +     T    +  N +         +  + LE L+L+ N +S + P
Sbjct: 15  AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPH-LEELELNENIVSAVEP 73

Query: 504 QCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLE 562
               N  + L  L L+ N+    IP  +  G   L  +D+S+N +   +     +  NL+
Sbjct: 74  GAFNNLFN-LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 563 FLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
            L++GDN +  I       L  L  L L+      +    +       L ++ L      
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI--PTEALSHLHGLIVLRLRHLNIN 189

Query: 623 GKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDI- 681
             +   +F+    +KV+  S   Y+   +  N   G+   SL++++     +   +P + 
Sbjct: 190 -AIRDYSFKRLYRLKVLEISHWPYLDT-MTPNCLYGLNLTSLSITH----CNLTAVPYLA 243

Query: 682 ------LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDL 735
                 L  + LS N       + +  L  LQ + L    L    P     L  L  L++
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303

Query: 736 SNNRFSGQIPQQLVE-LTFLEFFNVSDNHF 764
           S N+ +  + + +   +  LE   +  N  
Sbjct: 304 SGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (265), Expect = 4e-24
 Identities = 71/377 (18%), Positives = 128/377 (33%), Gaps = 80/377 (21%)

Query: 392 SHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSH 451
           S + RAV         +P+ +       LLDL  N+I   + +     S  +   L L+ 
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRI-KTLNQDEF-ASFPHLEELELNE 65

Query: 452 NFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSD 511
           N ++            V   +           L N L +L L  N L  +        S+
Sbjct: 66  NIVS-----------AVEPGAFNN--------LFN-LRTLGLRSNRLKLIPLGVFTGLSN 105

Query: 512 WLSILDLQHNKFSGTIPDNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQ 570
            L+ LD+  NK    + D + +    LK +++ DN L     R+ +  ++LE L L    
Sbjct: 106 -LTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163

Query: 571 IRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF 630
           +  I    L  L  L VL L+    + +     +     +L+++++S   +   +     
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAI--RDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 631 QCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSN 690
              N                                               LT++ ++  
Sbjct: 222 YGLN-----------------------------------------------LTSLSITHC 234

Query: 691 RFDGEIPT-SISNLKGLQILSLADNSLHGHIPSC-LGNLTDLESLDLSNNRFSGQIPQQL 748
                +P  ++ +L  L+ L+L+ N +   I    L  L  L+ + L   + +   P   
Sbjct: 235 NLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 749 VELTFLEFFNVSDNHFT 765
             L +L   NVS N  T
Sbjct: 293 RGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (259), Expect = 2e-23
 Identities = 69/401 (17%), Positives = 120/401 (29%), Gaps = 100/401 (24%)

Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLST 377
              R LD+ + +         ++  HL  L+ + N  S  ++   F  N   L  L L +
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAF-NNLFNLRTLGLRS 89

Query: 378 NRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLL 437
           NRL L+                                 +L  LD++ NKI   +  ++ 
Sbjct: 90  NRLKLIP------------------------LGVFTGLSNLTKLDISENKIV-ILLDYMF 124

Query: 438 DPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNN 497
              + N   L +  N L                             L++ LE L L   N
Sbjct: 125 Q-DLYNLKSLEVGDNDLVYIS-------------------HRAFSGLNS-LEQLTLEKCN 163

Query: 498 LSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPRSLA 556
           L+ +  + L +    L +L L+H   +  I D   K    LKV+++S       +  +  
Sbjct: 164 LTSIPTEALSHLH-GLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 557 NCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDL 616
              NL  L +    +  +    +  L  L  L L  N    +  E        +L+ I L
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI--EGSMLHELLRLQEIQL 279

Query: 617 SKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYK 676
              +    +   AF+          + LR +                             
Sbjct: 280 VGGQLA-VVEPYAFR--------GLNYLRVLN---------------------------- 302

Query: 677 KIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLH 717
                     +S N+      +   ++  L+ L L  N L 
Sbjct: 303 ----------VSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.4 bits (235), Expect = 3e-20
 Identities = 44/304 (14%), Positives = 85/304 (27%), Gaps = 81/304 (26%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
                   +P     +      LDL  N +  L      +F   L  L+L  N  S  + 
Sbjct: 19  HRKRFV-AVPE---GIPTETRLLDLGKNRIKTLNQDEFASFPH-LEELELNENIVS-AVE 72

Query: 529 DNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNV 587
                    L+ + L  N L+          SNL  LD+ +N+I  +             
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM--------- 123

Query: 588 LILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYM 647
                  F  L            L+ +++  N     +   AF                 
Sbjct: 124 -------FQDL----------YNLKSLEVGDNDLV-YISHRAFS---------------- 149

Query: 648 QEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQ 707
                             +++             L  + L           ++S+L GL 
Sbjct: 150 -----------------GLNS-------------LEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 708 ILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGP 767
           +L L   +++         L  L+ L++S+  +   +    +    L   +++  + T  
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA- 238

Query: 768 IPQG 771
           +P  
Sbjct: 239 VPYL 242

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  124 bits (314), Expect = 2e-30
 Identities = 81/419 (19%), Positives = 145/419 (34%), Gaps = 46/419 (10%)

Query: 201 TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG 260
                    L  ++P    ++    ++DLS N +++   T    L  L+ L + Q     
Sbjct: 13  YNAICINRGLH-QVPELPAHVN---YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL 68

Query: 261 ELP-NSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDF-SGELPA-SFGNL 317
            +  N+   L+SL  + L  N+FL     +   L  L  L+L   +     L    F  L
Sbjct: 69  VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128

Query: 318 RSLRTLDVYECKFSGQIPSSL-SNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLS 376
            SL  L + +       P+S   N+     LD + N      + D+     K    L LS
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188

Query: 377 TNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWL 436
           +  L  +               +       +     KN   +  LDL+ N     + K  
Sbjct: 189 SITLQDM---------------NEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRF 232

Query: 437 LD-PSMQNFGHLNLSHNFLTGFDQHPNTVNYLV-----------------SNNSLTGEIP 478
            D  +      L LS+++  G                             S + +   + 
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALL 291

Query: 479 SWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NIL 537
             + +    LE L L+ N ++ +        +  L  L+L  N    +I   + +  + L
Sbjct: 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH-LLKLNLSQNFLG-SIDSRMFENLDKL 349

Query: 538 KVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
           +V+DLS N ++    +S     NL+ L L  NQ++ +       L  L  + L +N + 
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.4 bits (248), Expect = 4e-22
 Identities = 85/459 (18%), Positives = 146/459 (31%), Gaps = 90/459 (19%)

Query: 94  VHLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAAFSGQIPSEILE-LSKLAYLDLS 151
            H+ ++DL+ N    +E+       L  L +L +        I +     LS L  L L 
Sbjct: 30  AHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 152 HNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR 211
           +N                  +   L+                   L++L  L+L+ C+L 
Sbjct: 88  YN------------------QFLQLETGAFNG-------------LANLEVLTLTQCNLD 116

Query: 212 GRI--PSSLGNITRLIHLDLSFNKLSDELP-TFIGTLGSLKELDLLQNNLSGELPNSIGN 268
           G +   +    +T L  L L  N +    P +F   +     LDL  N +       + N
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176

Query: 269 LASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC 328
                   L               L+ +    +       E   +     S+ TLD+   
Sbjct: 177 FQGKHFTLL--------------RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

Query: 329 KFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATS 388
            F   +     +    + +   + +       + + +     +  F   +  +      S
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILS-------NSYNMGSSFGHTNFKDPDNFTFKGLEAS 275

Query: 389 NTTSHRFRAVSLCSCDLTEIPK-FLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHL 447
              +       L    +  + K    +   LE L LA N+IN K+        + +   L
Sbjct: 276 GVKT-----CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFW-GLTHLLKL 328

Query: 448 NLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLG 507
           NLS NFL                      I S +    ++LE LDLSYN++  L  Q   
Sbjct: 329 NLSQNFLG--------------------SIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368

Query: 508 NFSDWLSILDLQHNKFSGTIPDNLLKGNI-LKVIDLSDN 545
                L  L L  N+   ++PD +      L+ I L  N
Sbjct: 369 GLP-NLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.7 bits (246), Expect = 8e-22
 Identities = 87/473 (18%), Positives = 142/473 (30%), Gaps = 97/473 (20%)

Query: 270 ASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPA-SFGNLRSLRTLDVYEC 328
           A +  VDLSLN       +S   L  L +L +        +   +F  L SL  L +   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 329 KFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATS 388
           +F      + + L +L  L  +  N  G +    F      L  L L  N +  +  A+ 
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS- 148

Query: 389 NTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLN 448
                                 F  N     +LDL  NK+     + LL+   ++F  L 
Sbjct: 149 ----------------------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 449 LSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGN 508
           LS   L              +   L  E        ++ + +LDLS N     + +   +
Sbjct: 187 LSSITLQDM-----------NEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFD 234

Query: 509 FSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGD 568
                 I  L  +                K  D  +   +G         S ++  DL  
Sbjct: 235 AIAGTKIQSLILSNSYNMGSS--FGHTNFK--DPDNFTFKG------LEASGVKTCDLSK 284

Query: 569 NQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSM 628
           ++I  +  S      DL  L L  N+ + +  +     G   L  ++LS+N     + S 
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKI--DDNAFWGLTHLLKLNLSQNFLG-SIDSR 341

Query: 629 AFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILS 688
            F+                               +L                 L  + LS
Sbjct: 342 MFE-------------------------------NLDK---------------LEVLDLS 355

Query: 689 SNRFDGEIPTSI-SNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRF 740
            N     +       L  L+ L+L  N L          LT L+ + L  N +
Sbjct: 356 YNHI-RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.0 bits (226), Expect = 3e-19
 Identities = 67/306 (21%), Positives = 107/306 (34%), Gaps = 28/306 (9%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII--NLSSLSYLNLSSA 129
            L L+   L G++ S +    L  LE L L  N+    +I P     N+     L+L+  
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI--KKIQPASFFLNMRRFHVLDLTFN 164

Query: 130 AFSGQIPSEI---LELSKLAYLDLSHNSYYD--PVELRKPSLGNLADKLTNLKELVLGDV 184
                I  E     +      L LS  +  D     L     GN   K T++  L L   
Sbjct: 165 KVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FKNTSITTLDLSGN 222

Query: 185 TISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGN---------------ITRLIHLDL 229
                +        + T +          + SS G+                + +   DL
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 230 SFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPS- 288
           S +K+   L +       L++L L QN ++    N+   L  L +++LS N  LG + S 
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSR 341

Query: 289 SLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLD 348
              NL +L  L L+ N        SF  L +L+ L +   +           LT L  + 
Sbjct: 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401

Query: 349 FSLNNF 354
              N +
Sbjct: 402 LHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.3 bits (214), Expect = 8e-18
 Identities = 70/368 (19%), Positives = 124/368 (33%), Gaps = 54/368 (14%)

Query: 446 HLNLSHNFLT-----GFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSG 500
           +++LS N +       F +  +     V   +    I +      + L  L L YN    
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 501 LLPQCLGNFSDWLSILDLQHNKF-SGTIPDNLLKG-NILKVIDLSDNLLQGRIPRSL-AN 557
           L        ++ L +L L         +  N  K    L+++ L DN ++   P S   N
Sbjct: 94  LETGAFNGLAN-LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 558 CSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILK--SNKFHGL--IREPKTDCGFP---- 609
                 LDL  N+++ I    L      +  +L+  S     +         CG P    
Sbjct: 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212

Query: 610 KLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNK 669
            +  +DLS N F   +    F        +  ++++ +     +N G+     +    + 
Sbjct: 213 SITTLDLSGNGFKESMAKRFF------DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 670 GQMMSYKKIPDILTAVILSSNRFDGEIPTSI-SNLKGLQILSLADNSLH----------- 717
                       +    LS ++    +  S+ S+   L+ L+LA N ++           
Sbjct: 267 F--TFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323

Query: 718 ------------GHIPSCL-GNLTDLESLDLSNNRFSGQIPQQL-VELTFLEFFNVSDNH 763
                       G I S +  NL  LE LDLS N     +  Q  + L  L+   +  N 
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQ 382

Query: 764 FTGPIPQG 771
               +P G
Sbjct: 383 LKS-VPDG 389

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 54/325 (16%), Positives = 91/325 (28%), Gaps = 46/325 (14%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
            N  L  ++P     L   +  +DLS N+++ L         D L  L ++       I 
Sbjct: 18  INRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQD-LQFLKVEQQTPGLVIR 71

Query: 529 DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVL 588
           +N               L            S+L  L L  NQ   +       L +L VL
Sbjct: 72  NNTF-----------RGL------------SSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 589 ILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQ 648
            L      G +           L ++ L  N      P+  F       V++ +      
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT------ 162

Query: 649 EVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQI 708
               FN+   I +  L           +     L    ++      E   +      +  
Sbjct: 163 ----FNKVKSICEEDLLNFQGKHFTLLRLSSITLQD--MNEYWLGWEKCGNPFKNTSITT 216

Query: 709 LSLADNSLHGHIPS---CLGNLTDLESLDLSN--NRFSGQIPQQLVELTFLEFFNVSDNH 763
           L L+ N     +          T ++SL LSN  N  S        +     F  +  + 
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 764 FTGPIPQGKQFATFDKTSFDGNSGL 788
                    +     K+ F   + L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDL 301

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 9e-08
 Identities = 41/210 (19%), Positives = 64/210 (30%), Gaps = 24/210 (11%)

Query: 50  GNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGS 109
           GN                  +  L LS+S   GS    ++     +  +  L        
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL-------- 272

Query: 110 EIPPEIINLSSLSYLNLSSAAFSGQIPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGN 168
                    S +   +LS +     +   +    + L  L L+ N      E+ K     
Sbjct: 273 -------EASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQN------EINKIDDNA 318

Query: 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLD 228
               LT+L +L L    + S        L  L  L LS   +R     S   +  L  L 
Sbjct: 319 F-WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377

Query: 229 LSFNKLSDELPTFIGTLGSLKELDLLQNNL 258
           L  N+L          L SL+++ L  N  
Sbjct: 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  121 bits (304), Expect = 1e-28
 Identities = 104/551 (18%), Positives = 181/551 (32%), Gaps = 80/551 (14%)

Query: 198 SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN 257
              + +  S  +L   +P       R   L LS N +S+     I  L  L+ L L  N 
Sbjct: 31  ELESMVDYSNRNLT-HVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87

Query: 258 LSGELPNSI-GNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDF-SGELPASFG 315
           +   L   +      LE +D+S NR L  +      +  L  L L+ NDF    +   FG
Sbjct: 88  IR-SLDFHVFLFNQDLEYLDVSHNR-LQNISC--CPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 316 NLRSLRTLDVYECKFSGQIPSSLSNL-THLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLF 374
           NL  L  L +   KF       +++L      LD    +  G     + + N  +L HL 
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLV 202

Query: 375 LSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPK 434
              N L  +    S                            HL+L ++  N  N +   
Sbjct: 203 FHPNSLFSVQVNMSVNALG-----------------------HLQLSNIKLNDENCQRLM 239

Query: 435 WLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLS 494
             L    +    LN++   +    +    +                       +E L++ 
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR---------------PVEYLNIY 284

Query: 495 YNNLSGLLPQCLGNFSD----WLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGR 550
              ++  + +    +S+     L I  +++  F  +          + +  LS +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 551 IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPK 610
                 + S+  FL+   N   D       TL  L  LIL+ N      +          
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404

Query: 611 LRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKG 670
           L  +D+S N               ++ V+N S                        SN  
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLS------------------------SNML 440

Query: 671 QMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIP-SCLGNLTD 729
               ++ +P  +  + L +NR    IP  +++L+ LQ L++A N L   +P      LT 
Sbjct: 441 TGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTS 498

Query: 730 LESLDLSNNRF 740
           L+ + L +N +
Sbjct: 499 LQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  114 bits (287), Expect = 1e-26
 Identities = 93/467 (19%), Positives = 167/467 (35%), Gaps = 52/467 (11%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
              K L L   +IS     ++++LS L  L LS   +R            L +LD+S N+
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 234 LSDELPTFIGTLGSLKELDLLQNNLSGELPNS--IGNLASLEQVDLSLNRFLGKVPSSLG 291
           L   +      + SL+ LDL  N+    LP     GNL  L  + LS  +F       + 
Sbjct: 112 LQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 292 NL-TQLHWLSLASNDFSGELPASF--GNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLD 348
           +L      L L S    G    S    N   L  +      FS Q+  S++ L HL   +
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 349 FSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL----LTKATSNTTSHRFRAVSLCSCD 404
             LN+ + +  +       +    L ++   +        K            +++ +  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 405 LTEIPKFLKNQHH------LELLDLASNKI----------------------NGKVPKWL 436
           +TE     +  +       L +  + +                         +      +
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 437 LDPSMQNFGHLNLSHNFLT-----GFDQHPNTVNYLVSNNSLTGEIPSWICNLSN--RLE 489
             PS  +F  LN + N  T     G          ++  N L            N   LE
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLE 406

Query: 490 SLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQG 549
           +LD+S N+L+         +++ + +L+L  N  +G++   L     +KV+DL +N +  
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM- 463

Query: 550 RIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
            IP+ + +   L+ L++  NQ++ +       L  L  + L  N + 
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.8 bits (220), Expect = 2e-18
 Identities = 94/509 (18%), Positives = 168/509 (33%), Gaps = 92/509 (18%)

Query: 72  KLDLSSSCLQGSINSSSSLF-KLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAA 130
            L LS + ++ S+     +F     LE+LD++ N             L ++S   ++S  
Sbjct: 80  VLRLSHNRIR-SL--DFHVFLFNQDLEYLDVSHN------------RLQNISCCPMAS-- 122

Query: 131 FSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPI 190
                         L +LDLS N            +      LT L  L L         
Sbjct: 123 --------------LRHLDLSFND------FDVLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 191 PHNLTYLS-SLTTLSLSGCDLRGRIPSSLGNI-TRLIHLDLSFNKLSDELPTFIGTLGSL 248
              + +L  S   L L    ++G    SL    T ++HL    N L         ++ +L
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ--VNMSVNAL 220

Query: 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSG 308
             L L    L+ E    +    S      +L                L  +         
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV------------TLQHIETTWKCSVK 268

Query: 309 ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHK 368
                F   R +  L++Y    + +I       +  +     + +        +FL + +
Sbjct: 269 LF--QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK----NQVFLFSKE 322

Query: 369 LLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKI 428
            LY +F   N   L     S + +     V  C    +              L+   N  
Sbjct: 323 ALYSVFAEMNIKML-----SISDTPFIHMV--CPPSPSS----------FTFLNFTQNVF 365

Query: 429 NGKVPKWLLDPSMQNFGHLNLSHNFLT-------GFDQHPNTVNYLVSNNSLTGEIPSWI 481
              V +     +++    L L  N L              +     VS NSL        
Sbjct: 366 TDSVFQGC--STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 482 CNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVID 541
           C  +  +  L+LS N L+G + +CL      + +LDL +N+   +IP ++     L+ ++
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCL---PPKVKVLDLHNNRIM-SIPKDVTHLQALQELN 479

Query: 542 LSDNLLQGRIPR-SLANCSNLEFLDLGDN 569
           ++ N L+  +P       ++L+++ L DN
Sbjct: 480 VASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.8 bits (207), Expect = 8e-17
 Identities = 82/462 (17%), Positives = 155/462 (33%), Gaps = 66/462 (14%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF 131
            LD+S + LQ     + S   +  L  LDL+FNDFD   +  E  NL+ L++L LS+A F
Sbjct: 104 YLDVSHNRLQ-----NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP 191
             Q+    +    L+ + L   SY+        SL      + +L        ++   + 
Sbjct: 159 R-QLDLLPVAHLHLSCILLDLVSYHIK-GGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216

Query: 192 HNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTL-----G 246
            N      L+ + L+  + +  +            L+++   +       +         
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 247 SLKELDLLQNNLSG-----ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSL 301
            ++ L++    ++      E   S   L SL    +    FL    +      +++   L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 302 ASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLD 361
           + +D          +  S   L+  +  F+  +    S L  L  L    N       + 
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396

Query: 362 IFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELL 421
           +   N   L  L +S N L           SH +              +       + +L
Sbjct: 397 LMTKNMSSLETLDVSLNSL----------NSHAYD-------RTCAWAE------SILVL 433

Query: 422 DLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWI 481
           +L+SN + G V + L          L+L +N +                      IP  +
Sbjct: 434 NLSSNMLTGSVFRCLP----PKVKVLDLHNNRIM--------------------SIPKDV 469

Query: 482 CNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKF 523
            +L   L+ L+++ N L  +        +  L  + L  N +
Sbjct: 470 THLQA-LQELNVASNQLKSVPDGVFDRLTS-LQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.6 bits (165), Expect = 9e-12
 Identities = 59/360 (16%), Positives = 120/360 (33%), Gaps = 33/360 (9%)

Query: 417 HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG-----FDQHPNTVNYLVSNN 471
             + L L+ N I+ ++    +   +     L LSHN +       F  + +     VS+N
Sbjct: 53  RTKALSLSQNSIS-ELRMPDIS-FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110

Query: 472 SLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDW--LSILDLQHNKFSGTIPD 529
            L   I    C +++ L  LDLS+N+   L P C   F +   L+ L L   KF      
Sbjct: 111 RLQ-NISC--CPMAS-LRHLDLSFNDFDVL-PVC-KEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 530 NLLKGNILKV-IDLSDNLLQGRIPRSLA--NCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586
            +   ++  + +DL    ++G    SL   N + L  +   ++         +  L  L 
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 587 VLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRY 646
           +  +K N  +                +++++                   +      + Y
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV----KLFQFFWPRPVEY 280

Query: 647 MQEVIPFNEGNGIYDYSLT-MSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKG 705
           +           IY+ ++T   ++ +    +     L    + +  F        S    
Sbjct: 281 LN----------IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 706 LQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
           + I  L+ +        C  + +    L+ + N F+  + Q    L  L+   +  N   
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  112 bits (282), Expect = 6e-26
 Identities = 55/299 (18%), Positives = 109/299 (36%), Gaps = 38/299 (12%)

Query: 61  VQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSS 120
           +    N    +  +   + + G+     S +     E   L   + + +    +   ++ 
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWD--KWEKQALPGENRNEAVSLLKECLINQ 60

Query: 121 LSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELV 180
            S L L+    S  +P  +    ++  L+++ N+           L +L +   +L+ L 
Sbjct: 61  FSELQLNRLNLS-SLPDNLP--PQITVLEITQNA-----------LISLPELPASLEYLD 106

Query: 181 LGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPT 240
             D  +S+ +P      +SL  L +    L   +P        L +++   N+L+  LP 
Sbjct: 107 ACDNRLST-LPELP---ASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPE 157

Query: 241 FIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL---- 296
                 SL+ L +  N L+  LP    +L +L   D+S N  L  +P+            
Sbjct: 158 ---LPTSLEVLSVRNNQLT-FLPELPESLEAL---DVSTNL-LESLPAVPVRNHHSEETE 209

Query: 297 HWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS 355
            +     N  +  +P +  +L    T+ + +   S +I  SLS  T           FS
Sbjct: 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (251), Expect = 3e-22
 Identities = 58/332 (17%), Positives = 99/332 (29%), Gaps = 38/332 (11%)

Query: 310 LPASFGNLRSLRTLDVYE--CKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH 367
           +     N  SL     Y           S+       +    + N     +  +  +   
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK-ECLINQ- 60

Query: 368 KLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNK 427
                L L+   LS L          +   + +    L  +P+   +   LE LD   N+
Sbjct: 61  --FSELQLNRLNLSSLPDNLPP----QITVLEITQNALISLPELPAS---LEYLDACDNR 111

Query: 428 INGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYL-VSNNSLTGEIPSWICNLSN 486
           ++       L     +  HL++ +N LT   + P  + Y+   NN LT  +P    +L  
Sbjct: 112 LST------LPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPELPTSL-- 162

Query: 487 RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSG---TIPDNLLKGNILKVIDLS 543
             E L +  N L+ L P+   +    L  LD+  N           N             
Sbjct: 163 --EVLSVRNNQLTFL-PELPES----LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215

Query: 544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPK 603
           +N +   IP ++ +      + L DN +       L               F     +  
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 604 TDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNA 635
           T        + D     F     S   Q W+A
Sbjct: 275 TLH----RPLADAVTAWFPENKQSDVSQIWHA 302

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.0 bits (223), Expect = 9e-19
 Identities = 61/314 (19%), Positives = 116/314 (36%), Gaps = 59/314 (18%)

Query: 467 LVSNNSLTGEIPSWICNLSN--RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFS 524
               N+++G    +        +      + N    LL +CL N     S L L     S
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ---FSELQLNRLNLS 72

Query: 525 GTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPD 584
            ++PDNL     + V++++ N L   +P      ++LE+LD  DN++  + P    +L  
Sbjct: 73  -SLPDNLPPQ--ITVLEITQNALI-SLPELP---ASLEYLDACDNRLSTL-PELPASLKH 124

Query: 585 LNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASEL 644
           L+   + +N+   L   P        L  I+   N+ T  LP               + L
Sbjct: 125 LD---VDNNQLTMLPELP------ALLEYINADNNQLT-MLPE------------LPTSL 162

Query: 645 RYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLK 704
                              L++ N  Q+    ++P+ L A+ +S+N  +  +P       
Sbjct: 163 E-----------------VLSVRNN-QLTFLPELPESLEALDVSTNLLE-SLPAVPVRNH 203

Query: 705 GLQ----ILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVS 760
             +         +N +  HIP  + +L    ++ L +N  S +I + L + T    ++  
Sbjct: 204 HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

Query: 761 DNHFTGPIPQGKQF 774
             +F+    Q    
Sbjct: 263 RIYFSMSDGQQNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.9 bits (124), Expect = 7e-07
 Identities = 37/281 (13%), Positives = 81/281 (28%), Gaps = 106/281 (37%)

Query: 490 SLDLSYNNLSGLLPQCLGNFSDW--LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLL 547
           S +  YN +SG        +  W   ++     N+    + + L+               
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN-------------- 59

Query: 548 QGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCG 607
                           L L    +  + P  L                            
Sbjct: 60  ------------QFSELQLNRLNLSSL-PDNLP--------------------------- 79

Query: 608 FPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMS 667
            P++ ++++++N     LP +             + L Y                 L   
Sbjct: 80  -PQITVLEITQNALI-SLPELP------------ASLEY-----------------LDAC 108

Query: 668 NKGQMMSYKKIPDILTAVI---LSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCL 724
           +         +P++  ++    + +N+    +P   + L   + ++  +N L   +P   
Sbjct: 109 D----NRLSTLPELPASLKHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELP 159

Query: 725 GNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
            +L   E L + NN+ +  +P+    L  L   +VS N   
Sbjct: 160 TSL---EVLSVRNNQLT-FLPELPESLEAL---DVSTNLLE 193

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  111 bits (279), Expect = 6e-26
 Identities = 78/427 (18%), Positives = 147/427 (34%), Gaps = 66/427 (15%)

Query: 175 NLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKL 234
           N    V     + +    +   L++LT+L      +     + +  +T L  L  + N +
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNI 76

Query: 235 SDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLT 294
           +  L   +    +L  L    N L+  L   +  L  L  ++   N+ L K+   +    
Sbjct: 77  TT-LD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNP 127

Query: 295 QLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNF 354
            L +L+ A N  + E+     +   L  LD +  K   ++   ++  T L+ LD S N  
Sbjct: 128 LLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 355 SGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKN 414
           +     ++ +  +KLL  L   TN ++ L    +      F  +   S  LTEI   +  
Sbjct: 183 T-----ELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTF--LDCSSNKLTEID--VTP 231

Query: 415 QHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLT 474
              L   D + N +  ++    L         L+     L   D   NT           
Sbjct: 232 LTQLTYFDCSVNPLT-ELDVSTL----SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286

Query: 475 GEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG 534
                 + + +  L  LD     ++                LDL  N             
Sbjct: 287 KIKELDVTHNTQ-LYLLDCQAAGITE---------------LDLSQNPK----------- 319

Query: 535 NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNK 594
             L  + L++  L   +   +++ + L+ L   +  I+D   S +G +P LN       +
Sbjct: 320 --LVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQ 372

Query: 595 FHGLIRE 601
              + +E
Sbjct: 373 TITMPKE 379

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.6 bits (233), Expect = 4e-20
 Identities = 85/466 (18%), Positives = 155/466 (33%), Gaps = 85/466 (18%)

Query: 75  LSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQ 134
             ++  +     + S  +L  L  LD   +    +++   I  L+ L+ L  +S      
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTG-IEKLTGLTKLICTS----NN 75

Query: 135 IPS-EILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHN 193
           I + ++ + + L YL    N      +L    +  L    T L  L      ++     +
Sbjct: 76  ITTLDLSQNTNLTYLACDSN------KLTNLDVTPL----TKLTYLNCDTNKLTK---LD 122

Query: 194 LTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDL 253
           ++    LT L+ +   L       + + T+L  LD   NK   +L   +     L  LD 
Sbjct: 123 VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC 177

Query: 254 LQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPAS 313
             N ++      +     L +++   N  + K+   L    QL +L  +SN  + E+   
Sbjct: 178 SFNKITEL---DVSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLT-EID-- 228

Query: 314 FGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHL 373
              L  L   D      +    S+LS LT L  +   L              N +L+Y  
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID-------LTHNTQLIYFQ 281

Query: 374 FLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVP 433
                ++  L                            + +   L LLD  +  I     
Sbjct: 282 AEGCRKIKELD---------------------------VTHNTQLYLLDCQAAGITE--- 311

Query: 434 KWLLDPS-MQNFGHLNLSHNFLTGFDQHPNT-VNYL-VSNNSLTGEIPSWICNLSNRLES 490
              LD S      +L L++  LT  D   NT +  L   N  +  +  S +  +   L +
Sbjct: 312 ---LDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ-DFSS-VGKIPA-LNN 365

Query: 491 LDLSYNNLSGLLPQCLGNFSDWLSI----LDLQHNKFSGTIPDNLL 532
              +      +  + L N S  +++    LD   N  +    D  +
Sbjct: 366 NFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGV 411

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.7 bits (197), Expect = 1e-15
 Identities = 70/470 (14%), Positives = 135/470 (28%), Gaps = 121/470 (25%)

Query: 299 LSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKM 358
              A+ +       S   L +L +LD +    +    + +  LT L+ L  + NN +   
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT--- 77

Query: 359 DLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHL 418
              + L  +  L +L   +N+L                         T +   +     L
Sbjct: 78  --TLDLSQNTNLTYLACDSNKL-------------------------TNLD--VTPLTKL 108

Query: 419 ELLDLASNKINGKVPKWLLDPS-MQNFGHLNLSHNFLTGFD--QHPNTVNYLVSNNSLTG 475
             L+  +NK+        LD S      +LN + N LT  D   +          N    
Sbjct: 109 TYLNCDTNKLTK------LDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKIT 162

Query: 476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGN 535
           ++   +   +  L +LD S+N ++ L           L+ L+   N  +  +  N     
Sbjct: 163 KLD--VTPQTQ-LTTLDCSFNKITELDVSQNKL----LNRLNCDTNNIT-KLDLNQNIQ- 213

Query: 536 ILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKF 595
            L  +D S N L   I   +   + L + D   N + ++    + TL  L  L       
Sbjct: 214 -LTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDL 266

Query: 596 HGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNE 655
             +           +L        R   K+  +       + +++               
Sbjct: 267 LEI-----DLTHNTQLIYFQAEGCR---KIKELDVTHNTQLYLLD--------------- 303

Query: 656 GNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNS 715
                                 I ++                  +S    L  L L +  
Sbjct: 304 -----------------CQAAGITEL-----------------DLSQNPKLVYLYLNNTE 329

Query: 716 LHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
           L   +   + + T L+SL   N          + ++  L     ++    
Sbjct: 330 LT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.9 bits (187), Expect = 2e-14
 Identities = 72/505 (14%), Positives = 136/505 (26%), Gaps = 126/505 (24%)

Query: 248 LKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS 307
                     +      S   LA+L  +D   +       + +  LT L  L   SN+ +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNIT 77

Query: 308 GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH 367
             L        +L  L     K +      ++ LT L++L+   N  +      + +  +
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT-----KLDVSQN 126

Query: 368 KLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNK 427
            LL +L  + N L+ +                            + +   L  LD   NK
Sbjct: 127 PLLTYLNCARNTLTEID---------------------------VSHNTQLTELDCHLNK 159

Query: 428 INGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNR 487
                   L          L+ S N +T  D                      +      
Sbjct: 160 KI----TKLDVTPQTQLTTLDCSFNKITELD----------------------VSQNKL- 192

Query: 488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLL 547
           L  L+   NN++ L           L+ LD   NK +  I    L    L   D S N L
Sbjct: 193 LNRLNCDTNNITKLDLNQNIQ----LTFLDCSSNKLT-EIDVTPLTQ--LTYFDCSVNPL 245

Query: 548 QGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCG 607
              +  S    S L  L      + +I  +    L        +  K   +         
Sbjct: 246 T-ELDVS--TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDV-------TH 295

Query: 608 FPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMS 667
             +L ++D      T     +       +  +  +                + +  ++ +
Sbjct: 296 NTQLYLLDCQAAGIT----ELDLSQNPKLVYLYLN-------------NTELTELDVSHN 338

Query: 668 NKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNL 727
            K            L ++   +     +   S+  +  L     A+              
Sbjct: 339 TK------------LKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEG-----------QT 373

Query: 728 TDLESLDLSNNRFSGQIPQQLVELT 752
             +    L+NN  +  +   L++  
Sbjct: 374 ITMPKETLTNNSLTIAVSPDLLDQF 398

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 56/376 (14%), Positives = 113/376 (30%), Gaps = 69/376 (18%)

Query: 395 FRAVSLCSCDLTEI-PKFLKNQHHLELLDLASNKINGKVPKWLLDP--SMQNFGHLNLSH 451
           F +    + ++        +    L  LD  ++ I        +     +     L  + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD------MTGIEKLTGLTKLICTS 73

Query: 452 NFLTGFD--QHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNF 509
           N +T  D  Q+ N       +N LT  +   +  L+  L  L+   N L+ L        
Sbjct: 74  NNITTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTK-LTYLNCDTNKLTKLDVSQNPL- 128

Query: 510 SDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDN 569
              L+ L+   N  +     +  +   L  +D   N    ++   +   + L  LD   N
Sbjct: 129 ---LTYLNCARNTLTEIDVSHNTQ---LTELDCHLNKKITKLD--VTPQTQLTTLDCSFN 180

Query: 570 QIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMA 629
           +I ++    +     LN L   +N    L           +L  +D S N+ T       
Sbjct: 181 KITELD---VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTE------ 226

Query: 630 FQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSS 689
                    ++ + L  +                LT  +   +         LT +    
Sbjct: 227 ---------IDVTPLTQLTYFD-------CSVNPLTELDVSTLSK-------LTTLHCIQ 263

Query: 690 NRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLV 749
                EI   +++   L             +   + + T L  LD      + ++   L 
Sbjct: 264 TDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LS 315

Query: 750 ELTFLEFFNVSDNHFT 765
           +   L +  +++   T
Sbjct: 316 QNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.9 bits (169), Expect = 3e-12
 Identities = 50/314 (15%), Positives = 95/314 (30%), Gaps = 46/314 (14%)

Query: 78  SCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPS 137
            C      +   +     L  LD +FN     ++         L+ LN  +      I  
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVS----QNKLLNRLNCDT----NNITK 205

Query: 138 -EILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTY 196
            ++ +  +L +LD S N       L +  +  L    T L         ++      L+ 
Sbjct: 206 LDLNQNIQLTFLDCSSNK------LTEIDVTPL----TQLTYFDCSVNPLTELDVSTLS- 254

Query: 197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQN 256
              LTTL     DL       L + T+LI+      +   EL   +     L  LD    
Sbjct: 255 --KLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAA 307

Query: 257 NLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN 316
            ++ EL   +     L  + L+    L ++   + + T+L  LS  +     +   S G 
Sbjct: 308 GIT-ELD--LSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGK 359

Query: 317 LRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLS 376
           + +L                +      +     + N+ +  +  D+       +      
Sbjct: 360 IPALNNNFE-----------AEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408

Query: 377 TNRLSLLTKATSNT 390
                  T   +  
Sbjct: 409 GGVYDQATNTITWE 422

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 47/305 (15%), Positives = 93/305 (30%), Gaps = 55/305 (18%)

Query: 461 PNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQH 520
            N  + + +   +          L+  L SLD   ++++ +    +   +  L+ L    
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLAT-LTSLDCHNSSITDMTG--IEKLTG-LTKLICTS 73

Query: 521 NKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLG 580
           N  + T+  +      L  +    N L       +   + L +L+   N++  +  S   
Sbjct: 74  NNIT-TLDLSQNTN--LTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLDVS--- 124

Query: 581 TLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVN 640
             P L  L    N    +           +L  +D   N+   KL            V  
Sbjct: 125 QNPLLTYLNCARNTLTEI-----DVSHNTQLTELDCHLNKKITKLD-----------VTP 168

Query: 641 ASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSI 700
            ++L  +         N I +  ++ +              L  +   +N    ++   +
Sbjct: 169 QTQLTTLD-----CSFNKITELDVSQNKL------------LNRLNCDTNNIT-KLD--L 208

Query: 701 SNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVS 760
           +    L  L  + N L   I   +  LT L   D S N  +      L +LT L   +  
Sbjct: 209 NQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCI 262

Query: 761 DNHFT 765
                
Sbjct: 263 QTDLL 267

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (270), Expect = 2e-25
 Identities = 68/358 (18%), Positives = 124/358 (34%), Gaps = 67/358 (18%)

Query: 271 SLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF 330
            L  V  S +  L KVP  L   T L  L L +N  +      F NL++L TL +   K 
Sbjct: 32  HLRVVQCS-DLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 331 SGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNT 390
           S   P + + L  L  L  S N    ++   +     K L  L +  N ++ + K+    
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP----KTLQELRVHENEITKVRKSV--- 140

Query: 391 TSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKI-NGKVPKWLLDPSMQNFGHLNL 449
                                    + + +++L +N + +  +        M+   ++ +
Sbjct: 141 ---------------------FNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRI 178

Query: 450 SHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNF 509
           +   +T                     IP     L   L  L L  N ++ +    L   
Sbjct: 179 ADTNIT--------------------TIPQ---GLPPSLTELHLDGNKITKVDAASLKGL 215

Query: 510 SDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGD 568
           ++ L+ L L  N  S  + +  L     L+ + L++N L  ++P  LA+   ++ + L +
Sbjct: 216 NN-LAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 569 NQIRDI------FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNR 620
           N I  I       P +       + + L SN       +P T         + L   +
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (253), Expect = 2e-23
 Identities = 59/299 (19%), Positives = 105/299 (35%), Gaps = 63/299 (21%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
           S+  L  ++P    +L      LDL  N ++ +      N  + L  L L +NK S  I 
Sbjct: 39  SDLGLE-KVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKIS-KIS 92

Query: 529 DNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNV 587
                  + L+ + LS N L+  +P  +     L+ L + +N+I  +  S    L  + V
Sbjct: 93  PGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149

Query: 588 LILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYM 647
           + L +N       E     G  KL  I ++    T  +P             + +EL   
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--------SLTELH-- 198

Query: 648 QEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPT-SISNLKGL 706
                                                  L  N+   ++   S+  L  L
Sbjct: 199 ---------------------------------------LDGNKIT-KVDAASLKGLNNL 218

Query: 707 QILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
             L L+ NS+       L N   L  L L+NN+   ++P  L +  +++   + +N+ +
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (250), Expect = 6e-23
 Identities = 59/329 (17%), Positives = 118/329 (35%), Gaps = 57/329 (17%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
            +   L L +  I+     +   L +L TL L    +    P +   + +L  L LS N+
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 234 LSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKV--PSSLG 291
           L  ELP       +L+EL + +N ++    +    L  +  V+L  N          +  
Sbjct: 112 LK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 292 NLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSL 351
            + +L ++ +A  + +  +P   G   SL  L +   K +    +SL  L +L+ L  S 
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 352 NNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF 411
           N+ S  +D      N   L  L L+ N+                         L ++P  
Sbjct: 226 NSIS-AVDNGSL-ANTPHLRELHLNNNK-------------------------LVKVPGG 258

Query: 412 LKNQHHLELLDLASNKI----NGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYL 467
           L +  +++++ L +N I    +        +    ++  ++L  N +  ++  P+T   +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 468 VSNNSLTGEIPSWICNLSNRLESLDLSYN 496
                                 ++ L   
Sbjct: 319 YV------------------RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 65/310 (20%), Positives = 107/310 (34%), Gaps = 56/310 (18%)

Query: 56  CSWDGVQCNEN---------TGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDF 106
           C    VQC++                LDL ++ +   I        L +L  L L  N  
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EI-KDGDFKNLKNLHTLILINNKI 88

Query: 107 DGSEIPPEI-INLSSLSYLNLSS--------AAFSG------------QIPSEILE-LSK 144
             S+I P     L  L  L LS                          ++   +   L++
Sbjct: 89  --SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 145 LAYLDLSHNSYYDPVELRKPSLGNLA-DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTL 203
           +  ++L  N       L+   + N A   +  L  + + D  I++ IP  L    SLT L
Sbjct: 147 MIVVELGTNP------LKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTEL 197

Query: 204 SLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELP 263
            L G  +     +SL  +  L  L LSFN +S      +     L+EL L  N L  ++P
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 264 NSIGNLASLEQVDLSLNRFLGKVPSS-------LGNLTQLHWLSLASNDFSGEL--PASF 314
             + +   ++ V L  N  +  + S+                +SL SN        P++F
Sbjct: 257 GGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

Query: 315 GNLRSLRTLD 324
             +     + 
Sbjct: 316 RCVYVRAAVQ 325

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.9 bits (221), Expect = 3e-19
 Identities = 67/353 (18%), Positives = 121/353 (34%), Gaps = 65/353 (18%)

Query: 396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT 455
           R V      L ++PK L       LLDL +NKI  ++       +++N   L L +N ++
Sbjct: 34  RVVQCSDLGLEKVPKDL--PPDTALLDLQNNKIT-EIKDGDFK-NLKNLHTLILINNKIS 89

Query: 456 G-----FDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFS 510
                 F          +S N L  E+P     +   L+ L +  N ++ +        +
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPE---KMPKTLQELRVHENEITKVRKSVFNGLN 145

Query: 511 DWLSILDLQHNKF-SGTIPDNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGD 568
             + +++L  N   S  I +   +G   L  I ++D  +   IP+ L    +L  L L  
Sbjct: 146 Q-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDG 201

Query: 569 NQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSM 628
           N+I  +  + L  L +L  L L  N    +  +  +    P LR + L+ N+   K+P  
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAV--DNGSLANTPHLRELHLNNNKLV-KVPG- 257

Query: 629 AFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILS 688
                         + +Y+Q V                      +    I  I +     
Sbjct: 258 GLA-----------DHKYIQVV---------------------YLHNNNISAIGSNDFCP 285

Query: 689 SNRFDGEIPTSISNLKGLQILSLADNSLHGHI--PSCLGNLTDLESLDLSNNR 739
                       +       +SL  N +      PS    +    ++ L N +
Sbjct: 286 PGYN--------TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.6 bits (202), Expect = 8e-17
 Identities = 41/205 (20%), Positives = 70/205 (34%), Gaps = 20/205 (9%)

Query: 86  SSSSLFKLVHLEWLDLAFNDFDGSEIPPEI-INLSSLSYLNLSSAAFSGQIPSEILELSK 144
             S    L  +  ++L  N    S I       +  LSY+ ++    +  IP  +     
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PS 193

Query: 145 LAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLS 204
           L  L L  N       + K    +L   L NL +L L   +IS+    +L     L  L 
Sbjct: 194 LTELHLDGNK------ITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 205 LSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD------ELPTFIGTLGSLKELDLLQNNL 258
           L+   L  ++P  L +   +  + L  N +S         P +     S   + L  N +
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 259 SGEL--PNSIGNLASLEQVDLSLNR 281
                 P++   +     V L   +
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.6 bits (202), Expect = 8e-17
 Identities = 56/264 (21%), Positives = 97/264 (36%), Gaps = 45/264 (17%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF 131
            L L ++ +  S  S  +   LV LE L L+ N     E+P ++    +L  L +     
Sbjct: 80  TLILINNKI--SKISPGAFAPLVKLERLYLSKNQL--KELPEKM--PKTLQELRVHENEI 133

Query: 132 SGQIPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGNLA-DKLTNLKELVLGD---VTI 186
           + ++   +   L+++  ++L  N       L+   + N A   +  L  + + D    TI
Sbjct: 134 T-KVRKSVFNGLNQMIVVELGTNP------LKSSGIENGAFQGMKKLSYIRIADTNITTI 186

Query: 187 SSPIPHNLTYL------------------SSLTTLSLSGCDLRGRIPSSLGNITRLIHLD 228
              +P +LT L                  ++L  L LS   +      SL N   L  L 
Sbjct: 187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 229 LSFNKLSDELPTFIGTLGSLKELDLLQNNLSG------ELPNSIGNLASLEQVDLSLNRF 282
           L+ NKL  ++P  +     ++ + L  NN+S         P      AS   V L  N  
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 283 LGKV--PSSLGNLTQLHWLSLASN 304
                 PS+   +     + L + 
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 7e-12
 Identities = 50/261 (19%), Positives = 84/261 (32%), Gaps = 61/261 (23%)

Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572
           L ++          +P +L       ++DL +N +         N  NL  L L +N+I 
Sbjct: 33  LRVVQCSDLGLE-KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC 632
            I P     L  L  L L  N+   L    K       L+ + + +N  T K+    F  
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLKEL--PEKM---PKTLQELRVHENEIT-KVRKSVF-- 141

Query: 633 WNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMS-NKGQMMSYKKIPDILTAVILSSNR 691
                    + L  M                + +  N             L +  + +  
Sbjct: 142 ---------NGLNQMIV--------------VELGTNP------------LKSSGIENGA 166

Query: 692 FDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQ-LVE 750
           F G        +K L  + +AD ++   IP   G    L  L L  N+ + ++    L  
Sbjct: 167 FQG--------MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKG 214

Query: 751 LTFLEFFNVSDNHFTGPIPQG 771
           L  L    +S N  +  +  G
Sbjct: 215 LNNLAKLGLSFNSISA-VDNG 234

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  107 bits (269), Expect = 3e-25
 Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 17/273 (6%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELP--TFIGTLGS 247
           IP  LT   ++ +L LS   +     S L     L  L L+ N ++  +   +F   LGS
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSS-LGS 101

Query: 248 LKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSL-GNLTQLHWLSLASNDF 306
           L+ LDL  N LS    +    L+SL  ++L  N +     +SL  +LT+L  L + + D 
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 307 SGELPA-SFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLV 365
             ++    F  L  L  L++         P SL ++ ++S L   +      +      V
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDV 220

Query: 366 NHKL----LYHLFLSTNRLSLLTKATSNTTSH--RFRAVSLCSCDLTEIPKFLKNQHHLE 419
              +    L    L T   S L+   +N+      FR V +    L ++ K L     L 
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280

Query: 420 LLDLASNKINGKVPKWLLDPSMQNFGHLNLSHN 452
            L+ + N++   VP  + D  + +   + L  N
Sbjct: 281 ELEFSRNQLKS-VPDGIFD-RLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.9 bits (244), Expect = 5e-22
 Identities = 59/252 (23%), Positives = 103/252 (40%), Gaps = 21/252 (8%)

Query: 86  SSSSLFKLVHLEWLDLAFNDFDGSEIPPEI-INLSSLSYLNLSSAAFSGQIPSEILE-LS 143
           S+S L + V+L+ L L  N    + I  +   +L SL +L+LS    S  + S   + LS
Sbjct: 68  SNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLS 124

Query: 144 KLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHN-LTYLSSLTT 202
            L +L+L  N        +     +L   LT L+ L +G++   + I       L+ L  
Sbjct: 125 SLTFLNLLGN------PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178

Query: 203 LSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGEL 262
           L +   DL+   P SL +I  + HL L   +    L  F+    S++ L+L   +L    
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 263 PNSI--------GNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASF 314
            + +            +   V ++    L +V   L  ++ L  L  + N         F
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297

Query: 315 GNLRSLRTLDVY 326
             L SL+ + ++
Sbjct: 298 DRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 60/315 (19%), Positives = 111/315 (35%), Gaps = 57/315 (18%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
           S+ SL   IPS    L+  ++SLDLS N ++ +    L    + L  L L  N  + TI 
Sbjct: 39  SSGSLN-SIPS---GLTEAVKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGIN-TIE 92

Query: 529 DNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP-SWLGTLPDLN 586
           ++       L+ +DLS N L           S+L FL+L  N  + +   S    L  L 
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 587 VLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRY 646
           +L + +      I + K   G   L  +++  +         + +      + N S L  
Sbjct: 153 ILRVGNMDTFTKI-QRKDFAGLTFLEELEIDASDLQ-SYEPKSLK-----SIQNVSHLI- 204

Query: 647 MQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDI-------LTAVILSSNRFDGEIPTS 699
                       ++     +           + +I       +  + L     D    + 
Sbjct: 205 ------------LHMKQHIL-----------LLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 700 IS--------NLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVE- 750
           +S             + + + D SL   +   L  ++ L  L+ S N+    +P  + + 
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDR 299

Query: 751 LTFLEFFNVSDNHFT 765
           LT L+   +  N + 
Sbjct: 300 LTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.3 bits (214), Expect = 3e-18
 Identities = 59/327 (18%), Positives = 109/327 (33%), Gaps = 64/327 (19%)

Query: 270 ASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECK 329
            +++ +DLS NR      S L     L  L L SN  +     SF +L SL  LD+    
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 330 FSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSN 389
            S    S    L+ L+FL+   N +    +  +F    KL      + +  + +      
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ----- 166

Query: 390 TTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNL 449
                               K       LE L++ ++ +        L  S+QN  HL L
Sbjct: 167 -------------------RKDFAGLTFLEELEIDASDLQ-SYEPKSLK-SIQNVSHLIL 205

Query: 450 SHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNF 509
                                      +     ++++ +E L+L   +L           
Sbjct: 206 HMKQHI--------------------LLLEIFVDVTSSVECLELRDTDLDTF-------- 237

Query: 510 SDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDN 569
                      ++ S    ++L+K    + + ++D  L  ++ + L   S L  L+   N
Sbjct: 238 ---------HFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 570 QIRDIFPSWLGTLPDLNVLILKSNKFH 596
           Q++ +       L  L  + L +N + 
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.0 bits (195), Expect = 9e-16
 Identities = 62/349 (17%), Positives = 112/349 (32%), Gaps = 74/349 (21%)

Query: 399 SLCSCD-----LTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNF 453
               C      L  IP  L     ++ LDL++N+I   +    L     N   L L+ N 
Sbjct: 32  RNGICKGSSGSLNSIPSGLTE--AVKSLDLSNNRIT-YISNSDLQ-RCVNLQALVLTSNG 87

Query: 454 LTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWL 513
           +       ++ + L S                  LE LDLSYN LS L        S  L
Sbjct: 88  INTI--EEDSFSSLGS------------------LEHLDLSYNYLSNLSSSWFKPLSS-L 126

Query: 514 SILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIP-RSLANCSNLEFLDLGDNQI 571
           + L+L  N +      +L      L+++ + +     +I  +  A  + LE L++  + +
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 572 RDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQ 631
           +   P  L ++ +++ LIL   +   L            +  ++L               
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILL--LEIFVDVTSSVECLELRDTDLDT-------- 236

Query: 632 CWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNR 691
                                F+E +     SL                    V ++   
Sbjct: 237 -------------------FHFSELSTGETNSLIKKFT------------FRNVKITDES 265

Query: 692 FDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRF 740
              ++   ++ + GL  L  + N L          LT L+ + L  N +
Sbjct: 266 L-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 35/202 (17%), Positives = 72/202 (35%), Gaps = 21/202 (10%)

Query: 92  KLVHLEWLDLAFNDFDGSEIPPEII--NLSSLSYLNLSSAAFSGQIPSEILE-LSKLAYL 148
            L  L +L+L  N +    +    +  +L+ L  L + +     +I  +    L+ L  L
Sbjct: 122 PLSSLTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 149 DLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSG- 207
           ++  +       L+     +L   + N+  L+L        +   +   SS+  L L   
Sbjct: 180 EIDASD------LQSYEPKSL-KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 208 -------CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG 260
                   +L     +SL       ++ ++   L   +      +  L EL+  +N L  
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ-ISGLLELEFSRNQLKS 291

Query: 261 ELPNSIGNLASLEQVDLSLNRF 282
                   L SL+++ L  N +
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 43/259 (16%), Positives = 75/259 (28%), Gaps = 56/259 (21%)

Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
           I        + +IP  L +   +K +DLS+N +       L  C NL+ L L  N I  I
Sbjct: 35  ICKGSSGSLN-SIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91

Query: 575 FPSWLGTLPDLNVLILKSNK--------FHGLIREPKTDCGFPKLRIIDLSKNRFTGKLP 626
                 +L  L  L L  N         F  L            L  ++L  N +     
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL----------SSLTFLNLLGNPYKTLGE 141

Query: 627 SMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDI----- 681
           +  F                                 L +   G M ++ KI        
Sbjct: 142 TSLFSHLT----------------------------KLQILRVGNMDTFTKIQRKDFAGL 173

Query: 682 --LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNR 739
             L  + + ++      P S+ +++ +  L L        +   +   + +E L+L +  
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233

Query: 740 FSGQIPQQLVELTFLEFFN 758
                  +L          
Sbjct: 234 LDTFHFSELSTGETNSLIK 252

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (265), Expect = 4e-25
 Identities = 67/305 (21%), Positives = 112/305 (36%), Gaps = 39/305 (12%)

Query: 120 SLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLA-DKLTNLKE 178
           S + +  +S   +  +P+ I   S    L+L  N        +  SL +   DKLT L +
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIP--SSATRLELESN--------KLQSLPHGVFDKLTQLTK 56

Query: 179 LVLGD--VTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLS- 235
           L L    ++       +    +SL  L LS   +   + S+   + +L HLD   + L  
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 236 -DELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPS-SLGNL 293
             E   F+  L +L  LD+   +           L+SLE + ++ N F           L
Sbjct: 116 MSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 294 TQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNN 353
             L +L L+        P +F +L SL+ L++    F          L  L  LD+SLN+
Sbjct: 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234

Query: 354 FSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLK 413
                           L  L L+ N  +                   C+C+     +++K
Sbjct: 235 IM-TSKKQELQHFPSSLAFLNLTQNDFA-------------------CTCEHQSFLQWIK 274

Query: 414 NQHHL 418
           +Q  L
Sbjct: 275 DQRQL 279

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 68/267 (25%), Positives = 105/267 (39%), Gaps = 27/267 (10%)

Query: 56  CSWDGVQCNENTGHVI---------KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDF 106
           CS   ++CN      +         +L+L S+ LQ S+       KL  L  L L+ N  
Sbjct: 7   CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SL-PHGVFDKLTQLTKLSLSSNGL 64

Query: 107 DGSEIPPEI-INLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPS 165
                  +     +SL YL+LS       + S  L L +L +LD  H++      L++ S
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN------LKQMS 117

Query: 166 LGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPS-SLGNITRL 224
             ++   L NL  L +               LSSL  L ++G   +          +  L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 225 IHLDLSFNKLSDELP--TFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRF 282
             LDLS  +L  +L    F   L SL+ L++  NN           L SL+ +D SLN  
Sbjct: 178 TFLDLSQCQLE-QLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH- 234

Query: 283 LGKVPSSL--GNLTQLHWLSLASNDFS 307
           +            + L +L+L  NDF+
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.6 bits (241), Expect = 6e-22
 Identities = 72/331 (21%), Positives = 110/331 (33%), Gaps = 82/331 (24%)

Query: 199 SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNL 258
           S T +  +   L   +P+ +   +    L+L  NKL          L  L +L L  N L
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 259 S--GELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPAS-FG 315
           S  G    S     SL+ +DLS N  +  + S+   L QL  L    ++       S F 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 316 NLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF--LVNHKLLYHL 373
           +LR+L  LD+             + L+ L  L  + N+F      DIF  L N   L  L
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN---LTFL 180

Query: 374 FLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVP 433
            LS  +L  L+                             +   L++L+++ N       
Sbjct: 181 DLSQCQLEQLSPTA------------------------FNSLSSLQVLNMSHNNFFS--- 213

Query: 434 KWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDL 493
              LD     +  LN                                       L+ LD 
Sbjct: 214 ---LDTFP--YKCLN--------------------------------------SLQVLDY 230

Query: 494 SYNNLSGLLPQCLGNFSDWLSILDLQHNKFS 524
           S N++     Q L +F   L+ L+L  N F+
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 60/256 (23%), Positives = 92/256 (35%), Gaps = 37/256 (14%)

Query: 399 SLCSCD----------LTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLN 448
           S CSC           LT +P  +        L+L SNK+   +P  + D  +     L+
Sbjct: 3   SRCSCSGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQ-SLPHGVFD-KLTQLTKLS 58

Query: 449 LSHNFLTGFDQHPNTVNYLV-------SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGL 501
           LS N L+       +            S N +   + S    L   LE LD  ++NL  +
Sbjct: 59  LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ-LEHLDFQHSNLKQM 116

Query: 502 LP----QCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPR-SL 555
                   L N    L  LD+ H        + +  G + L+V+ ++ N  Q        
Sbjct: 117 SEFSVFLSLRN----LIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIID 615
               NL FLDL   Q+  + P+   +L  L VL +  N F  L  +         L+++D
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLNSLQVLD 229

Query: 616 LSKNRFTGKLPSMAFQ 631
            S N           Q
Sbjct: 230 YSLNHIM-TSKKQELQ 244

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 7e-21
 Identities = 53/302 (17%), Positives = 98/302 (32%), Gaps = 62/302 (20%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFS-GTI 527
           ++  LT  +P+    + +    L+L  N L  L        +  L+ L L  N  S    
Sbjct: 15  NSKGLT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGC 69

Query: 528 PDNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP-SWLGTLPDL 585
                 G   LK +DLS N +   +  +      LE LD   + ++ +   S   +L +L
Sbjct: 70  CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128

Query: 586 NVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR 645
             L +                G   L ++ ++ N F        F             L 
Sbjct: 129 IYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFT--------ELRNLT 178

Query: 646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSI-SNLK 704
           ++                                       LS  + + ++  +  ++L 
Sbjct: 179 FL--------------------------------------DLSQCQLE-QLSPTAFNSLS 199

Query: 705 GLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVE--LTFLEFFNVSDN 762
            LQ+L+++ N+           L  L+ LD S N       +Q ++   + L F N++ N
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

Query: 763 HF 764
            F
Sbjct: 259 DF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 62/302 (20%), Positives = 96/302 (31%), Gaps = 57/302 (18%)

Query: 446 HLNLSHNFLTGFDQH-PNTVNYL-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP 503
            +  +   LT      P++   L + +N L          L+  L  L LS N LS    
Sbjct: 11  EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLS-FKG 68

Query: 504 QCLGNFSD--WLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSL-ANCSN 560
            C  +      L  LDL  N    T+  N L    L+ +D   + L+     S+  +  N
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 561 LEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNR 620
           L +LD+     R  F      L  L VL +  N F      P        L  +DLS+ +
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQ 186

Query: 621 FTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPD 680
              +L   AF   ++                                             
Sbjct: 187 LE-QLSPTAFNSLSS--------------------------------------------- 200

Query: 681 ILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNL-TDLESLDLSNNR 739
            L  + +S N F          L  LQ+L  + N +       L +  + L  L+L+ N 
Sbjct: 201 -LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

Query: 740 FS 741
           F+
Sbjct: 260 FA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 55/281 (19%), Positives = 87/281 (30%), Gaps = 51/281 (18%)

Query: 319 SLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTN 378
           S   L++   K           LT L+ L  S N  S K            L +L LS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 379 RLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLD 438
            +  ++                                 LE LD   + +       +  
Sbjct: 89  GVITMSSNFLGLEQ-------------------------LEHLDFQHSNLKQMSEFSVFL 123

Query: 439 PSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNN- 497
            S++N  +L++SH               +  N    G        LS+ LE L ++ N+ 
Sbjct: 124 -SLRNLIYLDISHTHTR-----------VAFNGIFNG--------LSS-LEVLKMAGNSF 162

Query: 498 LSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPRSLA 556
               LP       + L+ LDL   +    +        + L+V+++S N           
Sbjct: 163 QENFLPDIFTELRN-LTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 557 NCSNLEFLDLGDNQIRDIFPSWLGTLPD-LNVLILKSNKFH 596
             ++L+ LD   N I       L   P  L  L L  N F 
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 49/233 (21%), Positives = 83/233 (35%), Gaps = 35/233 (15%)

Query: 538 KVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHG 597
             I  +   L   +P  +   S+   L+L  N+++ +       L  L  L L SN    
Sbjct: 10  TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 598 LIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASE--LRYMQEVIPFNE 655
                ++D G   L+ +DLS N     + S  F     ++ ++     L+ M E   F  
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 656 GNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSI-SNLKGLQILSLADN 714
                     + N             L  + +S           I + L  L++L +A N
Sbjct: 125 ----------LRN-------------LIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGN 160

Query: 715 SLHGHIPS-CLGNLTDLESLDLSNNRFSGQIPQQ-LVELTFLEFFNVSDNHFT 765
           S   +        L +L  LDLS  +   Q+       L+ L+  N+S N+F 
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 39/211 (18%), Positives = 65/211 (30%), Gaps = 32/211 (15%)

Query: 558 CSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLS 617
           CS  E +      +  + P+  G       L L+SNK   L           +L  + LS
Sbjct: 7   CSGTE-IRCNSKGLTSV-PT--GIPSSATRLELESNKLQSL--PHGVFDKLTQLTKLSLS 60

Query: 618 KNRFTGK-LPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYK 676
            N  + K   S +     ++K ++ S              NG+   S       Q     
Sbjct: 61  SNGLSFKGCCSQSDFGTTSLKYLDLSF-------------NGVITMSSNFLGLEQ----- 102

Query: 677 KIPDILTAVILSSNRFDGEIPTSI-SNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDL 735
                L  +    +        S+  +L+ L  L ++              L+ LE L +
Sbjct: 103 -----LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157

Query: 736 SNNRFSGQIPQQ-LVELTFLEFFNVSDNHFT 765
           + N F          EL  L F ++S     
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  105 bits (265), Expect = 7e-25
 Identities = 71/357 (19%), Positives = 117/357 (32%), Gaps = 66/357 (18%)

Query: 271 SLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF 330
            L  V  S +  L  VP  +   T L  L L +ND S      F  L+ L  L +   K 
Sbjct: 34  HLRVVQCS-DLGLKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 331 SGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNT 390
           S     + S L  L  L  S N+   ++  ++       L  L +  NR+  + K     
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP----SSLVELRIHDNRIRKVPKGV--- 142

Query: 391 TSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLS 450
                                     ++  +++  N +         +P    F  L L+
Sbjct: 143 ---------------------FSGLRNMNCIEMGGNPLENSG----FEPGA--FDGLKLN 175

Query: 451 HNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFS 510
           +  +              S   LT  IP    +L   L  L L +N +  +  + L  +S
Sbjct: 176 YLRI--------------SEAKLT-GIPK---DLPETLNELHLDHNKIQAIELEDLLRYS 217

Query: 511 DWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDN 569
             L  L L HN+    I +  L     L+ + L +N L  R+P  L +   L+ + L  N
Sbjct: 218 K-LYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274

Query: 570 QIRDIFPS------WLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNR 620
            I  +  +      +       N + L +N       +P T         I     +
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 4e-21
 Identities = 62/340 (18%), Positives = 113/340 (33%), Gaps = 63/340 (18%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK 249
           +P  ++     T L L   D+          +  L  L L  NK+S         L  L+
Sbjct: 48  VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105

Query: 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE 309
           +L + +N+L  E+P ++   +SL ++ +  NR           L  ++ + +  N     
Sbjct: 106 KLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 310 L--PASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH 367
              P +F  L  L  L + E K +  IP  L     L+ L    N     ++L+  L  +
Sbjct: 163 GFEPGAFDGL-KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLL-RY 216

Query: 368 KLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNK 427
             LY L L  N++ ++   +                        L     L  L L +NK
Sbjct: 217 SKLYRLGLGHNQIRMIENGS------------------------LSFLPTLRELHLDNNK 252

Query: 428 INGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNR 487
           ++ +VP  L  P ++    + L  N +T      N    +                    
Sbjct: 253 LS-RVPAGL--PDLKLLQVVYLHTNNITKV--GVNDFCPVGFGVKRA------------Y 295

Query: 488 LESLDLSYNNLSGL-----LPQCLGNFSDWLSILDLQHNK 522
              + L  N +          +C+ +       +   + K
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTD----RLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 68/318 (21%), Positives = 113/318 (35%), Gaps = 40/318 (12%)

Query: 56  CSWDGVQCNEN---------TGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDF 106
           C    VQC++          +     LDL ++ +   +        L HL  L L  N  
Sbjct: 33  CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-EL-RKDDFKGLQHLYALVLVNNKI 90

Query: 107 DGSEIPPEII-NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPS 165
             S+I  +    L  L  L +S      +IP  +   S L  L +  N       +RK  
Sbjct: 91  --SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNR------IRKVP 139

Query: 166 LGNLADKLTNLKELVLGDVTI-SSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRL 224
            G  +  L N+  + +G   + +S           L  L +S   L   IP  L     L
Sbjct: 140 KGVFSG-LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETL 195

Query: 225 IHLDLSFNKLSD-ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFL 283
             L L  NK+   EL   +     L  L L  N +      S+  L +L ++ L  N+ L
Sbjct: 196 NELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-L 253

Query: 284 GKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLR------SLRTLDVY--ECKFSGQIP 335
            +VP+ L +L  L  + L +N+ +      F  +           + ++     +    P
Sbjct: 254 SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

Query: 336 SSLSNLTHLSFLDFSLNN 353
           ++   +T    + F  N 
Sbjct: 314 ATFRCVTDRLAIQFG-NY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.4 bits (217), Expect = 1e-18
 Identities = 56/282 (19%), Positives = 93/282 (32%), Gaps = 20/282 (7%)

Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDN 545
             L+SL  +Y+        C       L ++          +P  +       ++DL +N
Sbjct: 14  PDLDSLPPTYS------AMCPFGCHCHLRVVQCSDLGLK-AVPKEISPD--TTLLDLQNN 64

Query: 546 LLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTD 605
            +            +L  L L +N+I  I       L  L  L +  N    +   P   
Sbjct: 65  DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI--PPNL- 121

Query: 606 CGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLT 665
                L  + +  NR   K+P   F     M  +                 +G+    L 
Sbjct: 122 --PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 666 MS-NKGQMMSYKKIPDILTAVILSSNRFDGEIPT-SISNLKGLQILSLADNSLHGHIPSC 723
           +S  K   +  K +P+ L  + L  N+    I    +     L  L L  N +       
Sbjct: 179 ISEAKLTGIP-KDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 724 LGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
           L  L  L  L L NN+ S ++P  L +L  L+   +  N+ T
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.1 bits (211), Expect = 6e-18
 Identities = 68/352 (19%), Positives = 117/352 (33%), Gaps = 64/352 (18%)

Query: 396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT 455
           R V      L  +PK +       LLDL +N I+ ++ K      +Q+   L L +N ++
Sbjct: 36  RVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDIS-ELRKDDFK-GLQHLYALVLVNNKIS 91

Query: 456 -----GFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFS 510
                 F          +S N L  EIP    NL + L  L +  N +  +         
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV-EIPP---NLPSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 511 DWLSILDLQHNKF-SGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDN 569
           + ++ +++  N   +         G  L  + +S+  L   IP+ L     L  L L  N
Sbjct: 148 N-MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHN 203

Query: 570 QIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMA 629
           +I+ I    L     L  L L  N+   +  E  +    P LR + L  N+ + ++P+  
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMI--ENGSLSFLPTLRELHLDNNKLS-RVPA-G 259

Query: 630 FQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSS 689
                 ++VV                 N I                 K+           
Sbjct: 260 LPDLKLLQVVYLH-------------TNNI----------------TKVG---------V 281

Query: 690 NRFDGEIPTSISNLKGLQILSLADNSLHGHI--PSCLGNLTDLESLDLSNNR 739
           N F                +SL +N +      P+    +TD  ++   N +
Sbjct: 282 NDFCP--VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.7 bits (210), Expect = 9e-18
 Identities = 63/294 (21%), Positives = 100/294 (34%), Gaps = 46/294 (15%)

Query: 120 SLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKEL 179
            L  +  S       +P EI        LDL +N      ELRK     L     +L  L
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDI---SELRKDDFKGL----QHLYAL 83

Query: 180 VLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR---GRIPSSL------------------ 218
           VL +  IS       + L  L  L +S   L      +PSSL                  
Sbjct: 84  VLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVF 143

Query: 219 GNITRLIHLDLSFNKLSD---ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQV 275
             +  +  +++  N L +   E   F G    L  L + +  L+  +P       +L ++
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLT-GIPK--DLPETLNEL 198

Query: 276 DLSLNRFLGKVPS-SLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI 334
            L  N+ +  +    L   ++L+ L L  N        S   L +LR L +   K S ++
Sbjct: 199 HLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 335 PSSLSNLTHLSFLDFSLNNFS----GKMDLDIFLVNHKLLYHLFLSTNRLSLLT 384
           P+ L +L  L  +    NN +           F V       + L  N +    
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 68/308 (22%), Positives = 112/308 (36%), Gaps = 43/308 (13%)

Query: 120 SLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKEL 179
             +   LS       +P  I   S   YL+L  N+      ++  +  +L     +L+ L
Sbjct: 60  VCTRRGLSE------VPQGIP--SNTRYLNLMENNI---QMIQADTFRHL----HHLEVL 104

Query: 180 VLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELP 239
            LG  +I          L+SL TL L    L      +   +++L  L L  N +   +P
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIP 163

Query: 240 --TFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVPSSLGNLTQL 296
              F   + SL  LDL +      +       L +L+ ++L +   +  +P+ L  L  L
Sbjct: 164 SYAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-LTPLVGL 220

Query: 297 HWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG 356
             L ++ N F    P SF  L SL+ L V   + S    ++   L  L  L+ + NN S 
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS- 279

Query: 357 KMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQH 416
            +  D+F    + L  L L  N                      C CD+  +  +L+   
Sbjct: 280 SLPHDLF-TPLRYLVELHLHHNPW-------------------NCDCDILWLAWWLREYI 319

Query: 417 HLELLDLA 424
                   
Sbjct: 320 PTNSTCCG 327

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.7 bits (241), Expect = 3e-21
 Identities = 55/256 (21%), Positives = 96/256 (37%), Gaps = 19/256 (7%)

Query: 392 SHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSH 451
           S++F  V      L+E+P+ +    +   L+L  N I   +        + +   L L  
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQ-MIQADTFR-HLHHLEVLQLGR 108

Query: 452 NFLTG-----FDQHPNTVNYLVSNNSLTGEIPS-WICNLSNRLESLDLSYNNLSGLLPQC 505
           N +       F+   +     + +N LT  IPS     LS  L  L L  N +  +    
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSK-LRELWLRNNPIESIPSYA 166

Query: 506 LGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPRSLANCSNLEFL 564
                  L  LDL   K    I +   +G   LK ++L    ++  +P +L     LE L
Sbjct: 167 FNRVPS-LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEEL 223

Query: 565 DLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGK 624
           ++  N   +I P     L  L  L + +++   +  E     G   L  ++L+ N  +  
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI--ERNAFDGLASLVELNLAHNNLS-S 280

Query: 625 LPSMAFQCWNAMKVVN 640
           LP   F     +  ++
Sbjct: 281 LPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.6 bits (238), Expect = 9e-21
 Identities = 54/283 (19%), Positives = 101/283 (35%), Gaps = 34/283 (12%)

Query: 482 CNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVI 540
           C+ SN+   +  +   LS + PQ           L+L  N     I  +  +  + L+V+
Sbjct: 50  CSCSNQFSKVVCTRRGLSEV-PQ---GIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVL 104

Query: 541 DLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIR 600
            L  N ++     +    ++L  L+L DN +  I       L  L  L L++N    +  
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-- 162

Query: 601 EPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIY 660
                   P L  +DL + +    +   AF+            L+Y+           + 
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFE--------GLFNLKYLN----------LG 204

Query: 661 DYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHI 720
             ++        +        L  + +S N F    P S   L  L+ L + ++ +    
Sbjct: 205 MCNIKDMPNLTPLVG------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258

Query: 721 PSCLGNLTDLESLDLSNNRFSGQIPQQLVE-LTFLEFFNVSDN 762
            +    L  L  L+L++N  S  +P  L   L +L   ++  N
Sbjct: 259 RNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.5 bits (230), Expect = 9e-20
 Identities = 62/281 (22%), Positives = 103/281 (36%), Gaps = 44/281 (15%)

Query: 56  CSWDG--VQCNENTGHVIKLDLSSSC----LQG-SINS--SSSLFKLVHLEWLDLAFNDF 106
           CS     V C       +   + S+     L   +I    + +   L HLE L L  N  
Sbjct: 52  CSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-- 109

Query: 107 DGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSL 166
                     ++       +   AF+G        L+ L  L+L  N       L     
Sbjct: 110 ----------SIRQ-----IEVGAFNG--------LASLNTLELFDN------WLTVIPS 140

Query: 167 GNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPS-SLGNITRLI 225
           G     L+ L+EL L +  I S   +    + SL  L L        I   +   +  L 
Sbjct: 141 GAFEY-LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199

Query: 226 HLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGK 285
           +L+L    +  ++P     L  L+EL++  N+     P S   L+SL+++ +  ++    
Sbjct: 200 YLNLGMCNIK-DMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 286 VPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
             ++   L  L  L+LA N+ S      F  LR L  L ++
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 51/329 (15%), Positives = 98/329 (29%), Gaps = 83/329 (25%)

Query: 271 SLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF 330
              +V  +  R L +VP  +   +   +L+L  N+       +F +L  L  L +     
Sbjct: 55  QFSKVVCT-RRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 331 SGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNT 390
                 + + L  L+ L+                          L  N L+++       
Sbjct: 112 RQIEVGAFNGLASLNTLE--------------------------LFDNWLTVIPSGA--- 142

Query: 391 TSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLS 450
                                 +    L  L L +N I   +P +  +  + +   L+L 
Sbjct: 143 ---------------------FEYLSKLRELWLRNNPIE-SIPSYAFNR-VPSLMRLDLG 179

Query: 451 HNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFS 510
                                 L          L N L+ L+L   N+  +      N +
Sbjct: 180 EL------------------KKLEYISEGAFEGLFN-LKYLNLGMCNIKDM-----PNLT 215

Query: 511 D--WLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLG 567
               L  L++  N F   I      G + LK + + ++ +      +    ++L  L+L 
Sbjct: 216 PLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 568 DNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
            N +  +       L  L  L L  N ++
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.6 bits (199), Expect = 6e-16
 Identities = 51/259 (19%), Positives = 92/259 (35%), Gaps = 23/259 (8%)

Query: 370 LYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF-LKNQHHLELLDLASNKI 428
              +  +   LS + +   + T    R ++L   ++  I     ++ HHLE+L L  N I
Sbjct: 56  FSKVVCTRRGLSEVPQGIPSNT----RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 429 NGKVPKWLLDPSMQNFGHLNLSHNFLTG-----FDQHPNTVNYLVSNNSLTGEIPSWICN 483
             ++     +  + +   L L  N+LT      F+         + NN +          
Sbjct: 112 R-QIEVGAFNG-LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169

Query: 484 LSNRLESLDLS-YNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD--NLLKGNILKVI 540
           + + L  LDL     L  +         + L  L+L        +P+   L+    L+ +
Sbjct: 170 VPS-LMRLDLGELKKLEYISEGAFEGLFN-LKYLNLGMCNIK-DMPNLTPLVG---LEEL 223

Query: 541 DLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIR 600
           ++S N      P S    S+L+ L + ++Q+  I  +    L  L  L L  N    L  
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-- 281

Query: 601 EPKTDCGFPKLRIIDLSKN 619
                     L  + L  N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 47/188 (25%), Positives = 65/188 (34%), Gaps = 15/188 (7%)

Query: 73  LDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEI-INLSSLSYLNLSSAAF 131
           L+L  + L   I  S +   L  L  L L  N      IP      + SL  L+L     
Sbjct: 128 LELFDNWLT-VI-PSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKK 183

Query: 132 SGQIPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPI 190
              I     E L  L YL+L               + NL   L  L+EL +         
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMC--------NIKDMPNLTP-LVGLEELEMSGNHFPEIR 234

Query: 191 PHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE 250
           P +   LSSL  L +    +     ++   +  L+ L+L+ N LS         L  L E
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294

Query: 251 LDLLQNNL 258
           L L  N  
Sbjct: 295 LHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 51/239 (21%), Positives = 77/239 (32%), Gaps = 58/239 (24%)

Query: 535 NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNK 594
           N    +  +   L   +P+ +   SN  +L+L +N I+ I       L  L VL L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 595 FHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFN 654
              +  E     G   L  ++L  N  T  +PS AF+                       
Sbjct: 111 IRQI--EVGAFNGLASLNTLELFDNWLT-VIPSGAFE----------------------- 144

Query: 655 EGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSI-SNLKGLQILSLAD 713
                    L+                L  + L +N     IP+   + +  L  L L +
Sbjct: 145 --------YLSK---------------LRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGE 180

Query: 714 -NSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG 771
              L          L +L+ L+L        +P  L  L  LE   +S NHF   I  G
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPE-IRPG 236

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.7 bits (241), Expect = 3e-21
 Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 17/255 (6%)

Query: 392 SHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSH 451
           S++F  V     +L E+P  +    +  LL+L  N+I   +        +++   L LS 
Sbjct: 42  SNQFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQ-IIKVNSFK-HLRHLEILQLSR 97

Query: 452 NFLTG-----FDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCL 506
           N +       F+   N     + +N LT         LS  L+ L L  N +  +     
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK-LKELWLRNNPIESIPSYAF 156

Query: 507 GNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565
                 L  LDL   K    I +   +G + L+ ++L+   L+  IP +L     L+ LD
Sbjct: 157 NRIPS-LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD 213

Query: 566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKL 625
           L  N +  I P     L  L  L +  ++   +  E         L  I+L+ N  T  L
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI--ERNAFDNLQSLVEINLAHNNLT-LL 270

Query: 626 PSMAFQCWNAMKVVN 640
           P   F   + ++ ++
Sbjct: 271 PHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 66/250 (26%), Positives = 98/250 (39%), Gaps = 18/250 (7%)

Query: 109 SEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168
            E+P  I   ++   LNL          +    L  L  L LS N       +R   +G 
Sbjct: 56  REVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN------HIRTIEIGA 107

Query: 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSL-GNITRLIHL 227
               L NL  L L D  +++       YLS L  L L    +   IPS     I  L  L
Sbjct: 108 FNG-LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRL 165

Query: 228 DLS-FNKLSDELP--TFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLG 284
           DL    +LS  +    F G L +L+ L+L   NL  E+P ++  L  L+++DLS N    
Sbjct: 166 DLGELKRLS-YISEGAFEG-LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221

Query: 285 KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHL 344
             P S   L  L  L +  +        +F NL+SL  +++     +       + L HL
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281

Query: 345 SFLDFSLNNF 354
             +    N +
Sbjct: 282 ERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 60/282 (21%), Positives = 101/282 (35%), Gaps = 32/282 (11%)

Query: 482 CNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVI 540
           C+ SN+   +     NL  + P      S    +L+L  N+    I  N  K    L+++
Sbjct: 39  CSCSNQFSKVICVRKNLREV-PD---GISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEIL 93

Query: 541 DLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIR 600
            LS N ++     +    +NL  L+L DN++  I       L  L  L L++N    +  
Sbjct: 94  QLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-- 151

Query: 601 EPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIY 660
                   P LR +DL + +    +   AF+          S LRY+           + 
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFE--------GLSNLRYLN----------LA 193

Query: 661 DYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHI 720
             +L        +        L  + LS N      P S   L  LQ L +  + +    
Sbjct: 194 MCNLREIPNLTPLIK------LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 721 PSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDN 762
            +   NL  L  ++L++N  +         L  LE  ++  N
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.5 bits (230), Expect = 8e-20
 Identities = 59/242 (24%), Positives = 95/242 (39%), Gaps = 35/242 (14%)

Query: 86  SSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKL 145
             +S   L HLE L L+ N            ++ +     +   AF+G        L+ L
Sbjct: 80  KVNSFKHLRHLEILQLSRN------------HIRT-----IEIGAFNG--------LANL 114

Query: 146 AYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSL 205
             L+L  N       L     G     L+ LKEL L +  I S   +    + SL  L L
Sbjct: 115 NTLELFDN------RLTTIPNGAFVY-LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167

Query: 206 SGCDLRGRIPS-SLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPN 264
                   I   +   ++ L +L+L+   L  E+P     L  L ELDL  N+LS   P 
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP-LIKLDELDLSGNHLSAIRPG 225

Query: 265 SIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLD 324
           S   L  L+++ +  ++      ++  NL  L  ++LA N+ +      F  L  L  + 
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285

Query: 325 VY 326
           ++
Sbjct: 286 LH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 61/258 (23%), Positives = 86/258 (33%), Gaps = 21/258 (8%)

Query: 370 LYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF-LKNQHHLELLDLASNKI 428
              +      L  +    S  T    R ++L    +  I     K+  HLE+L L+ N I
Sbjct: 45  FSKVICVRKNLREVPDGISTNT----RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 429 NGKVPKWLLDPSMQNFGHLNLSHNFLTG-----FDQHPNTVNYLVSNNSLTGEIPS-WIC 482
                       + N   L L  N LT      F          + NN +   IPS    
Sbjct: 101 RTIEIGAFNG--LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

Query: 483 NLSNRLESLDLS-YNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVID 541
            + + L  LDL     LS +        S+ L  L+L        IP+ L     L  +D
Sbjct: 158 RIPS-LRRLDLGELKRLSYISEGAFEGLSN-LRYLNLAMCNLR-EIPN-LTPLIKLDELD 213

Query: 542 LSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIRE 601
           LS N L    P S     +L+ L +  +QI+ I  +    L  L  + L  N    L   
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL--P 271

Query: 602 PKTDCGFPKLRIIDLSKN 619
                    L  I L  N
Sbjct: 272 HDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 8e-16
 Identities = 60/331 (18%), Positives = 104/331 (31%), Gaps = 87/331 (26%)

Query: 271 SLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF 330
              +V     + L +VP  +   T+L  L+L  N        SF +LR L  L +     
Sbjct: 44  QFSKVICV-RKNLREVPDGISTNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 331 SGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNT 390
                 + + L +L+ L+                          L  NRL+ +       
Sbjct: 101 RTIEIGAFNGLANLNTLE--------------------------LFDNRLTTIP------ 128

Query: 391 TSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLS 450
                                      L+ L L +N I   +P +  +  + +   L+L 
Sbjct: 129 ------------------NGAFVYLSKLKELWLRNNPIE-SIPSYAFNR-IPSLRRLDLG 168

Query: 451 HNFLTGFDQHPNTVNYL--VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGN 508
                           L  +S  +  G        LSN L  L+L+  NL  +      N
Sbjct: 169 EL------------KRLSYISEGAFEG--------LSN-LRYLNLAMCNLREI-----PN 202

Query: 509 FSD--WLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565
            +    L  LDL  N  S  I     +G   L+ + +  + +Q     +  N  +L  ++
Sbjct: 203 LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
           L  N +  +       L  L  + L  N ++
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.3 bits (193), Expect = 3e-15
 Identities = 56/325 (17%), Positives = 108/325 (33%), Gaps = 79/325 (24%)

Query: 246 GSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASND 305
               ++  ++ NL  E+P+ I    +   ++L  N+      +S  +L  L  L L+ N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 306 FSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLV 365
                  +F  L +L TL++++ + +     +   L+ L                     
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK-------------------- 139

Query: 366 NHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLAS 425
                  L+L  N +  +                      +     + +   L+L +   
Sbjct: 140 ------ELWLRNNPIESIP---------------------SYAFNRIPSLRRLDLGE--L 170

Query: 426 NKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLS 485
            +++  + +   +  + N  +LNL+   L                     EIP+ +  L 
Sbjct: 171 KRLS-YISEGAFE-GLSNLRYLNLAMCNLR--------------------EIPN-LTPLI 207

Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSD 544
             L+ LDLS N+LS + P         L  L +  ++    I  N       L  I+L+ 
Sbjct: 208 K-LDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAH 264

Query: 545 NLLQGRIPRSLANCSNLEFLDLGDN 569
           N L            +LE + L  N
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 6e-10
 Identities = 49/239 (20%), Positives = 85/239 (35%), Gaps = 58/239 (24%)

Query: 535 NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNK 594
           N    +      L+  +P  ++  +N   L+L +NQI+ I  +    L  L +L L  N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 595 FHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFN 654
              +  E     G   L  ++L  NR T  +P+ AF           S+L+ +       
Sbjct: 100 IRTI--EIGAFNGLANLNTLELFDNRLT-TIPNGAFV--------YLSKLKEL------- 141

Query: 655 EGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSI-SNLKGLQILSLAD 713
                                           L +N  +  IP+   + +  L+ L L +
Sbjct: 142 -------------------------------WLRNNPIE-SIPSYAFNRIPSLRRLDLGE 169

Query: 714 NSLHGHIPS-CLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG 771
                +I       L++L  L+L+      +IP  L  L  L+  ++S NH +  I  G
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA-IRPG 225

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.9 bits (228), Expect = 3e-20
 Identities = 50/292 (17%), Positives = 85/292 (29%), Gaps = 31/292 (10%)

Query: 291 GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLS---NLTHLSFL 347
           G  +  + L     +             SL+ L V   +   +I         ++ L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 348 DFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSH---RFRAVSLCSCD 404
                  +G     +       L  L L     +      +          + +S+    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 405 LTEIP-KFLKNQHHLELLDLASNKINGKVPKW--LLDPSMQNFGHLNLSHNFLTGFDQHP 461
                 + ++    L  LDL+ N   G+      L          L L +  +       
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM------- 213

Query: 462 NTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHN 521
                     + +G   +        L+ LDLS+N+L         ++   L+ L+L   
Sbjct: 214 ---------ETPSGVCSALAAARVQ-LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 522 KFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573
                +P  L     L V+DLS N L  R P S      +  L L  N   D
Sbjct: 264 GLK-QVPKGLPAK--LSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.4 bits (219), Expect = 4e-19
 Identities = 64/313 (20%), Positives = 99/313 (31%), Gaps = 34/313 (10%)

Query: 328 CKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKAT 387
           C FS   P   S    L   D  L  + G   L+  L        L   T+ +  L+   
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVEL--YGGGRSLEYLLKRVDTEADLGQFTDIIKSLS--- 69

Query: 388 SNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHL 447
                   RA  + S  L    + L     L+ L L + ++ G  P  LL+ +  +   L
Sbjct: 70  --LKRLTVRAARIPSRILFGALRVL-GISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 448 NLSHNFLTGFDQHPNTVNYL---------VSNNSLTGEIPSWICNLSNRLESLDLSYNNL 498
           NL +      D     +            ++           +      L +LDLS N  
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA-LSTLDLSDNPE 185

Query: 499 SGLLP----QCLGNFSDWLSILDLQHNKF---SGTIPDNLLKGNILKVIDLSDNLLQGRI 551
            G        C   F   L +L L++      SG           L+ +DLS N L+   
Sbjct: 186 LGERGLISALCPLKFPT-LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 552 PRSL-ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPK 610
                   S L  L+L    ++ +     G    L+VL L  N+              P+
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLDRNPSP----DELPQ 297

Query: 611 LRIIDLSKNRFTG 623
           +  + L  N F  
Sbjct: 298 VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 2e-17
 Identities = 54/292 (18%), Positives = 93/292 (31%), Gaps = 21/292 (7%)

Query: 46  KPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFND 105
           KP+  +  +C     V+       +  L       +  +   + + K + L+ L +    
Sbjct: 21  KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVD-TEADLGQFTDIIKSLSLKRLTVRAAR 79

Query: 106 FDGSEIP--PEIINLSSLSYLNLSSAAFSGQIPSEILEL--SKLAYLDLSHNSYYDPVEL 161
                +     ++ +S L  L L +   +G  P  +LE     L  L+L + S+      
Sbjct: 80  IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW 139

Query: 162 RKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRI------- 214
                  L      LK L +      +     +    +L+TL LS     G         
Sbjct: 140 LAELQQWL---KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196

Query: 215 PSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLE 273
           P     +  L   +      S            L+ LDL  N+L            + L 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 274 QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV 325
            ++LS    L +VP  L    +L  L L+ N      P S   L  +  L +
Sbjct: 257 SLNLSFTG-LKQVPKGL--PAKLSVLDLSYNRLD-RNP-SPDELPQVGNLSL 303

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 51/276 (18%), Positives = 89/276 (32%), Gaps = 24/276 (8%)

Query: 197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPT---FIGTLGSLKELDL 253
            S    L     +      + +     L  L +   ++   +      +  +  L+EL L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 254 LQNNLSGELPNSIGNLASLEQVDLSLNRF-LGKVPSSLGNL-----TQLHWLSLASNDFS 307
               ++G  P  +      +   L+L         + L  L       L  LS+A     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 308 GELPASFGNLRSLRTLDVYECKFSGQI-------PSSLSNLTHLSFLDFSLNNFSGKMDL 360
                      +L TLD+ +    G+        P     L  L+  +  +   SG    
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 361 DIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLEL 420
                    L  L LS N L     A S     +  +++L    L ++PK L     L +
Sbjct: 223 L--AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV 278

Query: 421 LDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG 456
           LDL+ N+++       L P +    +L+L  N    
Sbjct: 279 LDLSYNRLDRNPSPDEL-PQVG---NLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 8e-15
 Identities = 48/220 (21%), Positives = 71/220 (32%), Gaps = 9/220 (4%)

Query: 69  HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDG-SEIPPEIINLS--SLSYLN 125
            + +L L +  + G+            L  L+L    +        E+       L  L+
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 126 LSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVT 185
           ++ A        ++     L+ LDLS N       L           L  L     G  T
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 186 ISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSL-GNITRLIHLDLSFNKLSDELPTFIGT 244
            S            L  L LS   LR    +      ++L  L+LSF  L  ++P  +  
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA 274

Query: 245 LGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLG 284
              L  LDL  N L    P S   L  +  + L  N FL 
Sbjct: 275 --KLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 60/299 (20%), Positives = 92/299 (30%), Gaps = 45/299 (15%)

Query: 485 SNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSG-TIPDNLLKGNI------- 536
              LE L    +  + L       F+D +  L L+        IP  +L G +       
Sbjct: 42  GRSLEYLLKRVDTEADLGQ-----FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 537 LKVIDLSDNLLQGRIPRSLANCS--NLEFLDLGDNQIRDIFPSWLGTL-----PDLNVLI 589
           L+ + L +  + G  P  L   +  +L  L+L +        +WL  L     P L VL 
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLS 155

Query: 590 LKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQE 649
           +            +    FP L  +DLS N   G+   ++  C      +    LR    
Sbjct: 156 IAQAHSLNFS--CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN--- 210

Query: 650 VIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSI-SNLKGLQI 708
                           ++              L  + LS N                L  
Sbjct: 211 ----AGMETPSGVCSALAAARVQ---------LQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 709 LSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGP 767
           L+L+   L   +P  L     L  LDLS NR     P    EL  +   ++  N F   
Sbjct: 258 LNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NPSPD-ELPQVGNLSLKGNPFLDS 311

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.4 bits (225), Expect = 5e-20
 Identities = 54/209 (25%), Positives = 82/209 (39%), Gaps = 9/209 (4%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
              + + L    IS     +     +LT L L    L     ++   +  L  LDLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 234 LSDELP--TFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVPS-S 289
               +   TF G LG L  L L +  L  EL   +   LA+L+ + L  N  L  +P  +
Sbjct: 92  QLRSVDPATFHG-LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA-LQALPDDT 148

Query: 290 LGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDF 349
             +L  L  L L  N  S     +F  L SL  L +++ + +   P +  +L  L  L  
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 350 SLNNFSGKMDLDIFLVNHKLLYHLFLSTN 378
             NN S  +  +        L +L L+ N
Sbjct: 209 FANNLS-ALPTEALAPLRA-LQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 52/296 (17%), Positives = 85/296 (28%), Gaps = 81/296 (27%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
               L   +P     +    + + L  N +S +         + L+IL L  N  +  I 
Sbjct: 19  PQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRN-LTILWLHSNVLA-RID 72

Query: 529 DNLLKG-NILKVIDLSDNLLQGRIP-RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586
                G  +L+ +DLSDN     +   +      L  L L    ++++ P          
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-------- 124

Query: 587 VLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRY 646
                   F GL            L+ + L  N     LP   F+        +   L +
Sbjct: 125 --------FRGL----------AALQYLYLQDNALQ-ALPDDTFR--------DLGNLTH 157

Query: 647 MQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGL 706
           +                                       L  NR       +   L  L
Sbjct: 158 L--------------------------------------FLHGNRISSVPERAFRGLHSL 179

Query: 707 QILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDN 762
             L L  N +    P    +L  L +L L  N  S    + L  L  L++  ++DN
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 8/173 (4%)

Query: 461 PNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQH 520
             +    +  N ++    +      N L  L L  N L+ +        +  L  LDL  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRN-LTILWLHSNVLARIDAAAFTGLAL-LEQLDLSD 89

Query: 521 NKFSGTIPDNLLKGNI-LKVIDLSDNLLQGRIP-RSLANCSNLEFLDLGDNQIRDIFPSW 578
           N    ++      G   L  + L    LQ  +        + L++L L DN ++ +    
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 579 LGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQ 631
              L +L  L L  N+   +    +   G   L  + L +NR    +   AF+
Sbjct: 149 FRDLGNLTHLFLHGNRISSV--PERAFRGLHSLDRLLLHQNRVA-HVHPHAFR 198

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 57/261 (21%), Positives = 91/261 (34%), Gaps = 46/261 (17%)

Query: 399 SLCSCD-------------LTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFG 445
             C C              L  +P  +      + + L  N+I+  VP      + +N  
Sbjct: 4   GACVCYNEPKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRIS-HVPAASFR-ACRNLT 59

Query: 446 HLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNN-LSGLLPQ 504
            L L  N L             +   + TG        L+  LE LDLS N  L  + P 
Sbjct: 60  ILWLHSNVLA-----------RIDAAAFTG--------LAL-LEQLDLSDNAQLRSVDPA 99

Query: 505 CLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIP-RSLANCSNLE 562
                   L  L L        +   L +G   L+ + L DN LQ  +P  +  +  NL 
Sbjct: 100 TFHGLGR-LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT 156

Query: 563 FLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
            L L  N+I  +       L  L+ L+L  N+   +   P       +L  + L  N  +
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV--HPHAFRDLGRLMTLYLFANNLS 214

Query: 623 GKLPSMAFQCWNAMKVVNASE 643
             LP+ A     A++ +  ++
Sbjct: 215 -ALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 49/201 (24%), Positives = 77/201 (38%), Gaps = 19/201 (9%)

Query: 86  SSSSLFKLVHLEWLDLAFNDFDGSEIPPEI-INLSSLSYLNLSSAAFSGQIPSEILE-LS 143
            ++S     +L  L L  N    + I       L+ L  L+LS  A    +       L 
Sbjct: 48  PAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105

Query: 144 KLAYLDLSHNSYYDPVELRKPSLGNLA-DKLTNLKELVLGDVTISSPIPHN-LTYLSSLT 201
           +L  L L          L+   LG      L  L+ L L D  + + +P +    L +LT
Sbjct: 106 RLHTLHLDRCG------LQ--ELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLT 156

Query: 202 TLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELP--TFIGTLGSLKELDLLQNNLS 259
            L L G  +      +   +  L  L L  N+++  +    F   LG L  L L  NNLS
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRD-LGRLMTLYLFANNLS 214

Query: 260 GELPNSIGNLASLEQVDLSLN 280
                ++  L +L+ + L+ N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.9 bits (177), Expect = 7e-14
 Identities = 49/229 (21%), Positives = 76/229 (33%), Gaps = 26/229 (11%)

Query: 370 LYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK-FLKNQHHLELLDLASNKI 428
              +FL  NR+S +  A+     +    + L S  L  I          LE LDL+ N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRN-LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 429 NGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRL 488
              V        +     L+L    L                       P     L+  L
Sbjct: 93  LRSVDPATFHG-LGRLHTLHLDRCGLQELG-------------------PGLFRGLAA-L 131

Query: 489 ESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLL 547
           + L L  N L  L      +  + L+ L L  N+ S ++P+   +G + L  + L  N +
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV 189

Query: 548 QGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
               P +  +   L  L L  N +  +    L  L  L  L L  N + 
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 1/89 (1%)

Query: 678 IPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSN 737
           IP     + L  NR       S    + L IL L  N L     +    L  LE LDLS+
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 738 NRFSGQIPQQ-LVELTFLEFFNVSDNHFT 765
           N     +       L  L   ++      
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.8 bits (213), Expect = 3e-19
 Identities = 35/172 (20%), Positives = 77/172 (44%), Gaps = 14/172 (8%)

Query: 138 EILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYL 197
              +++ L Y+ L++ +  D        L  + +   N+K+L + ++  ++  P  ++ L
Sbjct: 39  TEAQMNSLTYITLANINVTD--------LTGI-EYAHNIKDLTINNIHATNYNP--ISGL 87

Query: 198 SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN 257
           S+L  L + G D+      +L  +T L  LD+S +   D + T I TL  +  +DL  N 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 258 LSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE 309
              ++   +  L  L+ +++  +  +      + +  +L+ L   S    G+
Sbjct: 148 AITDIMP-LKTLPELKSLNIQFDG-VHDY-RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 9e-14
 Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 10/157 (6%)

Query: 441 MQNFGHLNLSHNF---LTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNN 497
           M +  ++ L++     LTG +   N  +  ++N   T   P  I  LSN LE L +   +
Sbjct: 43  MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSN-LERLRIMGKD 99

Query: 498 LSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLAN 557
           ++      L   +  L++LD+ H+    +I   +     +  IDLS N     I   L  
Sbjct: 100 VTSDKIPNLSGLTS-LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKT 157

Query: 558 CSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNK 594
              L+ L++  + + D     +   P LN L   S  
Sbjct: 158 LPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 29/211 (13%), Positives = 66/211 (31%), Gaps = 36/211 (17%)

Query: 220 NITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSL 279
                ++  L  +  ++        + SL  + L   N++ +L   I    +++ + ++ 
Sbjct: 21  TFKAYLNGLLGQSSTANITE---AQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINN 75

Query: 280 NRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLS 339
                   + +  L+ L  L +   D + +   +   L SL  LD+        I + ++
Sbjct: 76  IHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 340 NLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVS 399
            L  ++ +D S N     +     L     L  L +  + +                   
Sbjct: 134 TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR--------------- 175

Query: 400 LCSCDLTEIPKFLKNQHHLELLDLASNKING 430
                       +++   L  L   S  I G
Sbjct: 176 -----------GIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDN 545
           N L  + L+  N++ L    +    + +  L + +   +   P + L    L+ + +   
Sbjct: 44  NSLTYITLANINVTDLTG--IEYAHN-IKDLTINNIHATNYNPISGLSN--LERLRIMGK 98

Query: 546 LLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTD 605
            +      +L+  ++L  LD+  +   D   + + TLP +N + L  N     I +    
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG---AITDIMPL 155

Query: 606 CGFPKLRIIDLSKNRFT 622
              P+L+ +++  +   
Sbjct: 156 KTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 39/166 (23%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF 131
            L +++        + + +  L +LE L +   D    +IP  +  L+SL+ L++S +A 
Sbjct: 70  DLTINNI----HATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAH 124

Query: 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP 191
              I ++I  L K+  +DLS+N                   +T++               
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNG-----------------AITDIM-------------- 153

Query: 192 HNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDE 237
             L  L  L +L++    +       + +  +L  L      +  +
Sbjct: 154 -PLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 417 HLELLDLASNKINGKVPKWLLDP--SMQNFGHLNLSHNFLT---GFDQHPNTVNYLVSNN 471
            L  + LA+  +        L       N   L +++   T         N     +   
Sbjct: 45  SLTYITLANINVTD------LTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK 98

Query: 472 SLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNL 531
            +T +    +  L++ L  LD+S++     +   +      ++ +DL +N     I    
Sbjct: 99  DVTSDKIPNLSGLTS-LTLLDISHSAHDDSILTKINTLPK-VNSIDLSYNGAITDIMP-- 154

Query: 532 LKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
           LK    LK +++  + +       + +   L  L      I   
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 31/241 (12%), Positives = 66/241 (27%), Gaps = 61/241 (25%)

Query: 526 TIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDL 585
            IPD+  K  +  ++  S          + A  ++L ++ L +  + D+    +    ++
Sbjct: 16  NIPDSTFKAYLNGLLGQSST-----ANITEAQMNSLTYITLANINVTDLTG--IEYAHNI 68

Query: 586 NVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR 645
             L + +              G   L  + +                   +       L 
Sbjct: 69  KDLTINNIH----ATNYNPISGLSNLERLRIMG---------------KDVTSDKIPNLS 109

Query: 646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKG 705
            +                                  LT + +S +  D  I T I+ L  
Sbjct: 110 GLTS--------------------------------LTLLDISHSAHDDSILTKINTLPK 137

Query: 706 LQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
           +  + L+ N     I   L  L +L+SL++  +         + +   L           
Sbjct: 138 VNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIG 194

Query: 766 G 766
           G
Sbjct: 195 G 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 59/234 (25%)

Query: 292 NLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSL 351
                    L  +  +     +   + SL  + +     +    + +    ++  L  + 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINN 75

Query: 352 NNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF 411
            + +   + +  +     L  L +    ++                        ++    
Sbjct: 76  IHAT---NYN-PISGLSNLERLRIMGKDVT------------------------SDKIPN 107

Query: 412 LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNN 471
           L     L LLD++ +  +  +   +    +     ++LS+                  N 
Sbjct: 108 LSGLTSLTLLDISHSAHDDSILTKINT--LPKVNSIDLSY------------------NG 147

Query: 472 SLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSG 525
           ++T      +  L   L+SL++ ++ +       + +F   L+ L        G
Sbjct: 148 AITD--IMPLKTLPE-LKSLNIQFDGVHDYRG--IEDFPK-LNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 698 TSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFF 757
           T I     ++ L++ +        + +  L++LE L +     +      L  LT L   
Sbjct: 60  TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 758 NVSDNHFTGPIPQG 771
           ++S +     I   
Sbjct: 118 DISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 14/112 (12%), Positives = 36/112 (32%), Gaps = 9/112 (8%)

Query: 516 LDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF 575
             L  +  +      +     L  I L++  +       +    N++ L + +    +  
Sbjct: 28  GLLGQSSTANITEAQMNS---LTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN 82

Query: 576 PSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPS 627
           P  +  L +L  L +          +     G   L ++D+S +     + +
Sbjct: 83  P--ISGLSNLERLRIMGKDVTSD--KIPNLSGLTSLTLLDISHSAHDDSILT 130

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.9 bits (225), Expect = 5e-19
 Identities = 58/306 (18%), Positives = 100/306 (32%), Gaps = 28/306 (9%)

Query: 84  INSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELS 143
           I               +L       ++       L+S+  +  +++     +   I  L 
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSV--TDAVT-QNELNSIDQIIANNSDIK-SV-QGIQYLP 65

Query: 144 KLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTL 203
            +  L L+ N      +L    +  L   L NL  L L +  I   +  +L  L  L +L
Sbjct: 66  NVTKLFLNGN------KLT--DIKPLT-NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114

Query: 204 SLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELP 263
           SL    +   I + L ++ +L  L L  NK++D   T +  L  L  L L  N +S ++ 
Sbjct: 115 SLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV 169

Query: 264 NSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTL 323
             +  L  L+ + LS N        +L  L  L  L L S +   +      NL    T+
Sbjct: 170 P-LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 324 D----VYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNR 379
                                      L    N  S      + +   K  +H  ++   
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286

Query: 380 LSLLTK 385
             + T 
Sbjct: 287 KEVYTV 292

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.2 bits (192), Expect = 5e-15
 Identities = 46/282 (16%), Positives = 94/282 (33%), Gaps = 44/282 (15%)

Query: 488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLL 547
           +         +  + P     F++     +L+    +  +  N L    +  I  +++ +
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAE-TIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDI 55

Query: 548 QGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCG 607
           +  +   +    N+  L L  N++ DI P  L  L +L  L L  NK    I++  +   
Sbjct: 56  K-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----IKDLSSLKD 107

Query: 608 FPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMS 667
             KL+ + L  N  +  +          ++ +                 N I D    ++
Sbjct: 108 LKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLG-------------NNKITD----IT 147

Query: 668 NKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNL 727
              ++         L  + L  N+   +I   ++ L  LQ L L+ N +       L  L
Sbjct: 148 VLSRLTK-------LDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS--DLRALAGL 196

Query: 728 TDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIP 769
            +L+ L+L +     +       L        +D     P  
Sbjct: 197 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.8 bits (191), Expect = 7e-15
 Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 28/214 (13%)

Query: 69  HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSS 128
            + ++  ++S     I S   +  L ++  L L  N    ++I P + NL +L +L L  
Sbjct: 44  SIDQIIANNS----DIKSVQGIQYLPNVTKLFLNGNKL--TDIKP-LTNLKNLGWLFLD- 95

Query: 129 AAFSGQIP--SEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTI 186
                +I   S + +L KL  L L HN       +    +  L   L  L+ L LG+  I
Sbjct: 96  ---ENKIKDLSSLKDLKKLKSLSLEHN------GISD--INGL-VHLPQLESLYLGNNKI 143

Query: 187 SSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLG 246
           +      L+ L+ L TLSL    +       L  +T+L +L LS N +SD     +  L 
Sbjct: 144 TD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLK 197

Query: 247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN 280
           +L  L+L       +  N   NL     V  +  
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 1e-14
 Identities = 55/310 (17%), Positives = 106/310 (34%), Gaps = 69/310 (22%)

Query: 454 LTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWL 513
           +   D    T+   +   S+T  +      L++ ++ +  + +++  +  Q +    + +
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDAVT--QNELNS-IDQIIANNSDIKSV--QGIQYLPN-V 67

Query: 514 SILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573
           + L L  NK +   P   LK   L  + L +N ++  +  SL +   L+ L L  N I D
Sbjct: 68  TKLFLNGNKLTDIKPLTNLKN--LGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISD 123

Query: 574 IFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCW 633
           I  + L  LP L  L L +NK    I +        KL  + L  N+ +           
Sbjct: 124 I--NGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQIS----------- 166

Query: 634 NAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFD 693
               +V  + L  +Q +  +   N I D                                
Sbjct: 167 ---DIVPLAGLTKLQNL--YLSKNHISDLR------------------------------ 191

Query: 694 GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTF 753
                +++ LK L +L L          +   NL    ++  ++       P+ + +   
Sbjct: 192 -----ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGD 244

Query: 754 LEFFNVSDNH 763
            E  NV  + 
Sbjct: 245 YEKPNVKWHL 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 2e-13
 Identities = 52/310 (16%), Positives = 92/310 (29%), Gaps = 91/310 (29%)

Query: 288 SSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFL 347
                  +    +L     +  +      L S+  +          +   +  L +++ L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 70

Query: 348 DFSLNNFSGKMDLDIF-LVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLT 406
             + N  +     DI  L N K L  LFL  N++  L+                      
Sbjct: 71  FLNGNKLT-----DIKPLTNLKNLGWLFLDENKIKDLS---------------------- 103

Query: 407 EIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNY 466
                LK+   L+ L L  N I+                        + G    P   + 
Sbjct: 104 ----SLKDLKKLKSLSLEHNGISD-----------------------INGLVHLPQLESL 136

Query: 467 LVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGT 526
            + NN +T +I   +  L+  L++L L  N +S ++P  L   +  L  L L  N     
Sbjct: 137 YLGNNKIT-DITV-LSRLTK-LDTLSLEDNQISDIVP--LAGLT-KLQNLYLSKNH---- 186

Query: 527 IPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586
                       + DL           +LA   NL+ L+L   +  +   +    L   N
Sbjct: 187 ------------ISDLR----------ALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 587 VLILKSNKFH 596
            +        
Sbjct: 225 TVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 9e-12
 Identities = 47/209 (22%), Positives = 76/209 (36%), Gaps = 24/209 (11%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF 131
           KL L+ +     +     L  L +L WL L  N     ++   + +L  L  L+L     
Sbjct: 69  KLFLNGN----KLTDIKPLTNLKNLGWLFLDENKI--KDLSS-LKDLKKLKSLSLEHNGI 121

Query: 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP 191
           S  I   ++ L +L  L L +N   D   L          +LT L  L L D  IS  I 
Sbjct: 122 S-DING-LVHLPQLESLYLGNNKITDITVL---------SRLTKLDTLSLEDNQISD-IV 169

Query: 192 HNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL 251
             L  L+ L  L LS   +      +L  +  L  L+L   +  ++       L     +
Sbjct: 170 -PLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 252 DLLQNNLSGELPNSIGNLASLEQVDLSLN 280
                +L    P  I +    E+ ++  +
Sbjct: 227 KNTDGSLVT--PEIISDDGDYEKPNVKWH 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.5 bits (212), Expect = 3e-18
 Identities = 57/293 (19%), Positives = 111/293 (37%), Gaps = 30/293 (10%)

Query: 69  HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSS 128
           + IK+    S    ++  + +   L  +  L         + I   +  L++L  L L  
Sbjct: 20  NAIKIAAGKS----NVTDTVTQADLDGITTLSAFGTGV--TTIEG-VQYLNNLIGLELKD 72

Query: 129 AAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISS 188
              +    + +  L+K+  L+LS N   +   +           L ++K L L    I+ 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPLKNVSAI---------AGLQSIKTLDLTSTQITD 121

Query: 189 PIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL 248
             P  L  LS+L  L L    +     S L  +T L +L +   ++SD   T +  L  L
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKL 175

Query: 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSG 308
             L    N +S ++   + +L +L +V L  N+      S L N + L  ++L +   + 
Sbjct: 176 TTLKADDNKIS-DISP-LASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITN 231

Query: 309 ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLD 361
           +      NL     +           P+++S+    +  + + N  S   ++ 
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGAPI--APATISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.7 bits (210), Expect = 6e-18
 Identities = 56/305 (18%), Positives = 109/305 (35%), Gaps = 30/305 (9%)

Query: 83  SINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILEL 142
           +IN       L +   +    ++           +L  ++ L+      +  I   +  L
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVT-TI-EGVQYL 62

Query: 143 SKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTT 202
           + L  L+L  N   D   L           LT + EL L    + +     +  L S+ T
Sbjct: 63  NNLIGLELKDNQITDLAPL---------KNLTKITELELSGNPLKNVSA--IAGLQSIKT 111

Query: 203 LSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGEL 262
           L L+   +     + L  ++ L  L L  N++++  P  +  L +L+ L +    +S +L
Sbjct: 112 LDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DL 166

Query: 263 PNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRT 322
              + NL+ L  +    N+      S L +L  L  + L +N  S   P    N  +L  
Sbjct: 167 TP-LANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 323 LDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL 382
           + +     + Q     +NL   +     +   SG       + ++       L+ N  S 
Sbjct: 222 VTLTNQTITNQPVFYNNNLVVPN----VVKGPSGAPIAPATISDNGTYASPNLTWNLTSF 277

Query: 383 LTKAT 387
           +   +
Sbjct: 278 INNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.4 bits (209), Expect = 9e-18
 Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 33/253 (13%)

Query: 141 ELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSL 200
            L+    +    ++  D V             L  +  L      +++ I   + YL++L
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ---------ADLDGITTLSAFGTGVTT-IE-GVQYLNNL 65

Query: 201 TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG 260
             L L    +     + L N+T++  L+LS N L +   + I  L S+K LDL    ++ 
Sbjct: 66  IGLELKDNQITD--LAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD 121

Query: 261 ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASN---DFSGELPASFGNL 317
                +  L++L+ + L LN+      S L  LT L +LS+ +    D +        NL
Sbjct: 122 --VTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP-----LANL 172

Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLST 377
             L TL   + K S    S L++L +L  +    N  S   D+   L N   L+ + L+ 
Sbjct: 173 SKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQIS---DVS-PLANTSNLFIVTLTN 226

Query: 378 NRLSLLTKATSNT 390
             ++      +N 
Sbjct: 227 QTITNQPVFYNNN 239

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 59/323 (18%), Positives = 129/323 (39%), Gaps = 32/323 (9%)

Query: 216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQV 275
                +   I +    + ++D +      L  +  L      ++  +   +  L +L  +
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGL 68

Query: 276 DLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP 335
           +L  N+      + L NLT++  L L+ N       ++   L+S++TLD+   + +   P
Sbjct: 69  ELKDNQI--TDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 336 SSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRF 395
             L+ L++L  L   LN  +   ++   L     L +L +   ++S LT   + +   + 
Sbjct: 125 --LAGLSNLQVLYLDLNQIT---NIS-PLAGLTNLQYLSIGNAQVSDLTPLANLS---KL 175

Query: 396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDP--SMQNFGHLNLSHNF 453
             +      +++I   L +  +L  + L +N+I+       + P  +  N   + L++  
Sbjct: 176 TTLKADDNKISDIS-PLASLPNLIEVHLKNNQISD------VSPLANTSNLFIVTLTNQT 228

Query: 454 LT---GFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFS 510
           +T    F  +   V  +V   S     P+ I +      S +L++N  S +       F+
Sbjct: 229 ITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGT-YASPNLTWNLTSFINNVSY-TFN 286

Query: 511 DWLSILDLQHNKFSGTIPDNLLK 533
             ++  +     FSGT+   L +
Sbjct: 287 QSVTFKNTT-VPFSGTVTQPLTE 308

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 63/308 (20%), Positives = 100/308 (32%), Gaps = 69/308 (22%)

Query: 288 SSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFL 347
                L     ++   ++ +  +     +L  + TL  +    +  I   +  L +L  L
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGL 68

Query: 348 DFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTE 407
           +   N  +   DL   L N   +  L LS N L  +                        
Sbjct: 69  ELKDNQIT---DLA-PLKNLTKITELELSGNPLKNV------------------------ 100

Query: 408 IPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYL 467
               +     ++ LDL S +I    P       + N   L L  N +T            
Sbjct: 101 --SAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQIT------------ 142

Query: 468 VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTI 527
                    I   +  L+N L+ L +    +S L P  L N S  L+ L    NK S   
Sbjct: 143 --------NISP-LAGLTN-LQYLSIGNAQVSDLTP--LANLSK-LTTLKADDNKISDIS 189

Query: 528 P-DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586
           P  +L     L  + L +N +    P  LAN SNL  + L +  I +    +   L   N
Sbjct: 190 PLASLPN---LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244

Query: 587 VLILKSNK 594
           V+   S  
Sbjct: 245 VVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 28/229 (12%)

Query: 399 SLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDP--SMQNFGHLNLSHNFLT- 455
           +    ++T+      +   +  L      +        ++    + N   L L  N +T 
Sbjct: 25  AAGKSNVTDTV-TQADLDGITTLSAFGTGVTT------IEGVQYLNNLIGLELKDNQITD 77

Query: 456 --GFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWL 513
                         +S N L   + + I  L + +++LDL+   ++ + P  L   S+ L
Sbjct: 78  LAPLKNLTKITELELSGNPLK-NVSA-IAGLQS-IKTLDLTSTQITDVTP--LAGLSN-L 131

Query: 514 SILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573
            +L L  N+ +   P   L    L+ + + +  +    P  LAN S L  L   DN+I D
Sbjct: 132 QVLYLDLNQITNISPLAGLTN--LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187

Query: 574 IFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
           I P  L +LP+L  + LK+N+    I +         L I+ L+    T
Sbjct: 188 ISP--LASLPNLIEVHLKNNQ----ISDVSPLANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 47/258 (18%), Positives = 87/258 (33%), Gaps = 53/258 (20%)

Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572
              +    +  + T+    L G  +  +      +   I   +   +NL  L+L DNQI 
Sbjct: 21  AIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT 76

Query: 573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT-----GKLPS 627
           D+ P  L  L  +  L L  N     ++      G   ++ +DL+  + T       L +
Sbjct: 77  DLAP--LKNLTKITELELSGNP----LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 628 MAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVIL 687
           +     +  ++ N S L  +                                  L  + +
Sbjct: 131 LQVLYLDLNQITNISPLAGLTN--------------------------------LQYLSI 158

Query: 688 SSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQ 747
            + +     P  ++NL  L  L   DN +     S L +L +L  + L NN+ S   P  
Sbjct: 159 GNAQVSDLTP--LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP-- 212

Query: 748 LVELTFLEFFNVSDNHFT 765
           L   + L    +++   T
Sbjct: 213 LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 47/226 (20%)

Query: 555 LANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRII 614
               +N   +  G + + D        L  +  L          +   +       L  +
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG----VTTIEGVQYLNNLIGL 68

Query: 615 DLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQM-- 672
           +L  N+ T               +     L  + E+      N + +    +S    +  
Sbjct: 69  ELKDNQIT--------------DLAPLKNLTKITELELSG--NPLKN----VSAIAGLQS 108

Query: 673 -----MSYKKIPDI--------LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGH 719
                ++  +I D+        L  + L  N+    I   ++ L  LQ LS+ +  +   
Sbjct: 109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDL 166

Query: 720 IPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
            P  L NL+ L +L   +N+ S   P  L  L  L   ++ +N  +
Sbjct: 167 TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 49/214 (22%)

Query: 568 DNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPS 627
              I  IFP     L +   +    +     + +  T      +  +       T     
Sbjct: 6   PTAINVIFP--DPALANAIKIAAGKSN----VTDTVTQADLDGITTLSAFGTGVT----- 54

Query: 628 MAFQCWNAMKVVNASELRYMQEVIPFN-EGNGIYDYS-------LTMSNKGQMMSYKKIP 679
                           ++Y+  +I    + N I D +       +T       +S   + 
Sbjct: 55  ------------TIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELE----LSGNPLK 98

Query: 680 DI--------LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLE 731
           ++        +  + L+S +     P  ++ L  LQ+L L  N +  +I   L  LT+L+
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQ 154

Query: 732 SLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
            L + N + S   P  L  L+ L      DN  +
Sbjct: 155 YLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.6 bits (215), Expect = 6e-18
 Identities = 91/456 (19%), Positives = 149/456 (32%), Gaps = 73/456 (16%)

Query: 174 TNLKELVLGDVTISSP-IPHNLTYLSSLTTLSLSGCDLRGR----IPSSLGNITRLIHLD 228
            +++ L +    +S       L  L     + L  C L       I S+L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 229 LSFNKLSDE-----LPTFIGTLGSLKELDLLQNNLSGE----LPNSIGNLASLEQVDLSL 279
           L  N+L D      L         +++L L    L+G     L +++  L +L+++ LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 280 NRFLGKVPSSLG-----NLTQLHWLSLASNDFSGE----LPASFGNLRSLRTLDVYECKF 330
           N         L         +L  L L     S      L +        + L V     
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 331 SGQ----IPSSL-SNLTHLSFLDFSLNNFS--GKMDLDIFLVNHKLLYHLFLSTNRLS-- 381
           +      +   L  +   L  L       +     DL   + +   L  L L +N+L   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 382 ---LLTKATSNTTSHRFRAVSLCSCDLTE-----IPKFLKNQHHLELLDLASNKINGKVP 433
               L     +  S R R + +  C +T      + + L+ +  L+ L LA N++  +  
Sbjct: 243 GMAELCPGLLHP-SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 434 KWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNL---SNRLES 490
           + L +        L      L             V + S T    S   ++   +  L  
Sbjct: 302 RLLCE-------TLLEPGCQLESLW---------VKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 491 LDLSYNNLSG----LLPQCLGNFSDWLSILDLQHNKFS----GTIPDNLLKGNILKVIDL 542
           L +S N L       L Q LG     L +L L     S     ++   LL  + L+ +DL
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 543 SDNLLQGRIPRSLA-----NCSNLEFLDLGDNQIRD 573
           S+N L       L          LE L L D    +
Sbjct: 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 80/446 (17%), Positives = 140/446 (31%), Gaps = 86/446 (19%)

Query: 224 LIHLDLSFNKLSDE-LPTFIGTLGSLKELDLLQNNLSGE----LPNSIGNLASLEQVDLS 278
           +  LD+   +LSD      +  L   + + L    L+      + +++    +L +++L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 279 LNRFLGKVPSSLGNL-----TQLHWLSLASNDFSGE----LPASFGNLRSLRTLDVYECK 329
            N         +         ++  LSL +   +G     L ++   L +L+ L + +  
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 330 FSGQ-----IPSSLSNLTHLSFLDFSLNNFSGKMDLDIF--LVNHKLLYHLFLSTNRLS- 381
                        L     L  L     + S      +   L        L +S N ++ 
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 382 ----LLTKATSNTTSHRFRAVSLCSCDLTE-----IPKFLKNQHHLELLDLASNKINGKV 432
               +L +   ++   +  A+ L SC +T      +   + ++  L  L L SNK+    
Sbjct: 185 AGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 433 PKWL---LDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLE 489
              L   L         L +    +T      +    L +  SL                
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLK--------------- 287

Query: 490 SLDLSYNNLSG----LLPQCLGNFSDWLSILDLQHNKFSGTIPDNL---LKGNI-LKVID 541
            L L+ N L      LL + L      L  L ++   F+     +    L  N  L  + 
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 542 LSDNLLQGRIPRSLA-----NCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
           +S+N L+    R L        S L  L L D  + D   S L          L +N   
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-------LLAN--- 397

Query: 597 GLIREPKTDCGFPKLRIIDLSKNRFT 622
                         LR +DLS N   
Sbjct: 398 ------------HSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 68.1 bits (167), Expect = 5e-12
 Identities = 79/430 (18%), Positives = 127/430 (29%), Gaps = 118/430 (27%)

Query: 69  HVIKLDLSSSCL--QGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII------NLSS 120
            + KL L + CL   G    SS+L  L  L+ L L+ N    + +  +++          
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL--QLLCEGLLDPQCR 143

Query: 121 LSYLNLSSAAFSGQ----IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176
           L  L L   + S      + S +        L +S+N       + +  +  L   L + 
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND------INEAGVRVLCQGLKDS 197

Query: 177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGR----IPSSLGNITRLIHLDLSFN 232
                                  L  L L  C +       +   + +   L  L L  N
Sbjct: 198 P--------------------CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 233 KLSDE-----LPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVP 287
           KL D       P  +     L+ L + +  ++ +     G+L                  
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK---GCGDLC----------------- 277

Query: 288 SSLGNLTQLHWLSLASNDFSGE-----LPASFGNLRSLRTLDVYECKFSGQ----IPSSL 338
             L     L  LSLA N+   E               L +L V  C F+        S L
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337

Query: 339 SNLTHLSFLDFSLNNF--SGKMDLDIFL-VNHKLLYHLFLSTNRLSLLTKATSNTTSHRF 395
           +    L  L  S N    +G  +L   L     +L  L+L+   +S              
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS-------------- 383

Query: 396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKING----------KVPKWLLDPSMQNFG 445
                    L      L   H L  LDL++N +            + P  LL+       
Sbjct: 384 ---DSSCSSLAAT---LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE------- 430

Query: 446 HLNLSHNFLT 455
            L L   + +
Sbjct: 431 QLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.4 bits (155), Expect = 2e-10
 Identities = 80/497 (16%), Positives = 151/497 (30%), Gaps = 108/497 (21%)

Query: 318 RSLRTLDVYECKFSGQ-IPSSLSNLTHLSFLDFSLNNFSGK--MDLDIFLVNHKLLYHLF 374
             +++LD+   + S       L  L     +       +     D+   L  +  L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 375 LSTNRLS-----LLTKATSNTTSHRFRAVSLCSCDLTE-----IPKFLKNQHHLELLDLA 424
           L +N L       + +     +    + +SL +C LT      +   L+    L+ L L+
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCK-IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 425 SNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYL-VSNNSLTGEIPSWICN 483
            N +         D  +Q      L              +  L +   SL+      + +
Sbjct: 122 DNLLG--------DAGLQLLCEGLLDPQC---------RLEKLQLEYCSLSAASCEPLAS 164

Query: 484 L---SNRLESLDLSYNNLSG----LLPQCLGNFSDWLSILDLQHNKFS----GTIPDNLL 532
           +       + L +S N+++     +L Q L +    L  L L+    +      +   + 
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 533 KGNILKVIDLSDNLLQGRIPRSLAN-----CSNLEFLDLGDNQIRDIFPSWLGTLPDLNV 587
               L+ + L  N L       L        S L  L + +  I       L  +     
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV----- 279

Query: 588 LILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNAS--ELR 645
             L++ +                L+ + L+ N         A      +         L 
Sbjct: 280 --LRAKE---------------SLKELSLAGNELG---DEGARLLCETLLEPGCQLESLW 319

Query: 646 YMQEVIPFNEGNGIYDYSLT---MSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSIS- 701
                        +   S T    S+   +++  +    L  + +S+NR +      +  
Sbjct: 320 -------------VKSCSFTAACCSHFSSVLAQNRF---LLELQISNNRLEDAGVRELCQ 363

Query: 702 ----NLKGLQILSLADNSLH----GHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVEL-- 751
                   L++L LAD  +       + + L     L  LDLSNN        QLVE   
Sbjct: 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 423

Query: 752 ---TFLEFFNVSDNHFT 765
                LE   + D +++
Sbjct: 424 QPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 9e-04
 Identities = 52/317 (16%), Positives = 99/317 (31%), Gaps = 55/317 (17%)

Query: 484 LSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGT----IPDNLLKGNILKV 539
           +S  ++SLD+    LS      L        ++ L     +      I   L     L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 540 IDLSDNLLQGRIPRSLANC-----SNLEFLDLGDNQIRD----IFPSWLGTLPDLNVLIL 590
           ++L  N L       +          ++ L L +  +      +  S L TLP L  L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 591 KSNKFH--------GLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNAS 642
             N             + +P+      +L  + L     +             +    AS
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQC-----RLEKLQLEYCSLSA-------ASCEPL----AS 164

Query: 643 ELRYMQEVIPFN-EGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGE----IP 697
            LR   +        N I +  + +  +G   S  +    L A+ L S     +    + 
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ----LEALKLESCGVTSDNCRDLC 220

Query: 698 TSISNLKGLQILSLADNSLHGH-----IPSCLGNLTDLESLDLSNNRFSGQ----IPQQL 748
             +++   L+ L+L  N L         P  L   + L +L +     + +    + + L
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 749 VELTFLEFFNVSDNHFT 765
                L+  +++ N   
Sbjct: 281 RAKESLKELSLAGNELG 297

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.9 bits (200), Expect = 9e-17
 Identities = 56/273 (20%), Positives = 96/273 (35%), Gaps = 30/273 (10%)

Query: 83  SINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPS--EIL 140
            I    S          +L       ++       L+S+  +  +++     I S   I 
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSV--TDAVT-QNELNSIDQIIANNS----DIKSVQGIQ 65

Query: 141 ELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSL 200
            L  +  L L+ N        +   +  LA  L NL  L L +  +      +L  L  L
Sbjct: 66  YLPNVTKLFLNGN--------KLTDIKPLA-NLKNLGWLFLDENKVKDL--SSLKDLKKL 114

Query: 201 TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG 260
            +LSL    +   I + L ++ +L  L L  NK++D   T +  L  L  L L  N +S 
Sbjct: 115 KSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS- 169

Query: 261 ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSL 320
           ++   +  L  L+ + LS N        +L  L  L  L L S +   +      NL   
Sbjct: 170 DIVP-LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

Query: 321 RTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNN 353
            T+   +       P  +S+       +   + 
Sbjct: 227 NTVKNTDGSLVT--PEIISDDGDYEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 46/241 (19%), Positives = 92/241 (38%), Gaps = 29/241 (12%)

Query: 117 NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176
             +     NL   + +  +     EL+ +  +  +++            +  +   L N+
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--------VQGI-QYLPNV 70

Query: 177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD 236
            +L L    ++  I   L  L +L  L L    ++  + SSL ++ +L  L L  N +SD
Sbjct: 71  TKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISD 126

Query: 237 ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL 296
                +  L  L+ L L  N ++      +  L  L+ + L  N+        L  LT+L
Sbjct: 127 --INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKL 180

Query: 297 HWLSLASN---DFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNN 353
             L L+ N   D           L++L  L+++  +   +  +  SNL   + +  +  +
Sbjct: 181 QNLYLSKNHISDLRA-----LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 354 F 354
            
Sbjct: 236 L 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 49/214 (22%), Positives = 78/214 (36%), Gaps = 23/214 (10%)

Query: 412 LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT---GFDQHPNTVNYLV 468
                     +L    +   V +      + +   +  +++ +    G    PN     +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL 75

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
           + N LT +I   + NL N L  L L  N +  L    L +    L  L L+HN  S    
Sbjct: 76  NGNKLT-DIKP-LANLKN-LGWLFLDENKVKDLSS--LKDLKK-LKSLSLEHNGISDING 129

Query: 529 DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVL 588
              L    L+ + L +N +       L+  + L+ L L DNQI DI P  L  L  L  L
Sbjct: 130 LVHLPQ--LESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183

Query: 589 ILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
            L  N     I + +   G   L +++L      
Sbjct: 184 YLSKNH----ISDLRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 44/255 (17%), Positives = 90/255 (35%), Gaps = 41/255 (16%)

Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572
               +L+    +  +  N L    +  I  +++ ++  +   +    N+  L L  N++ 
Sbjct: 26  TIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT 81

Query: 573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC 632
           DI P  L  L +L  L L  NK    +++  +     KL+ + L  N  +          
Sbjct: 82  DIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNGIS---------- 125

Query: 633 WNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRF 692
                +     L  ++ +  +   N I D    ++   ++         L  + L  N+ 
Sbjct: 126 ----DINGLVHLPQLESL--YLGNNKITD----ITVLSRLTK-------LDTLSLEDNQI 168

Query: 693 DGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELT 752
             +I   ++ L  LQ L L+ N +   +   L  L +L+ L+L +     +       L 
Sbjct: 169 S-DIV-PLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 753 FLEFFNVSDNHFTGP 767
                  +D     P
Sbjct: 225 VPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 63/320 (19%), Positives = 110/320 (34%), Gaps = 68/320 (21%)

Query: 454 LTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWL 513
           +   D    T+   +   S+T  +      L++ ++ +  + +++  +  Q +    + +
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVT--QNELNS-IDQIIANNSDIKSV--QGIQYLPN-V 70

Query: 514 SILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573
           + L L  NK +   P   LK   L  + L +N ++  +  SL +   L+ L L  N I D
Sbjct: 71  TKLFLNGNKLTDIKPLANLKN--LGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD 126

Query: 574 IFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCW 633
           I    L  LP L  L L +NK    I +        KL  + L  N+ +           
Sbjct: 127 ING--LVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQIS----------- 169

Query: 634 NAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFD 693
               +V  + L  +Q +  +   N I D       K            L  + L S    
Sbjct: 170 ---DIVPLAGLTKLQNL--YLSKNHISDLRALAGLKN-----------LDVLELFSQECL 213

Query: 694 GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNN--------------- 738
            +     SNL     +   D SL    P  + +  D E  ++  +               
Sbjct: 214 NKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQP 271

Query: 739 --------RFSGQIPQQLVE 750
                   RF G++ Q L E
Sbjct: 272 VTIGKAKARFHGRVTQPLKE 291

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 18/201 (8%)

Query: 398 VSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT-- 455
           +   + D+  + + ++   ++  L L  NK+    P      +++N G L L  N +   
Sbjct: 51  IIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDL 105

Query: 456 -GFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLS 514
                     +  + +N ++ +I   + +L   LESL L  N ++ +    L   +  L 
Sbjct: 106 SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQ-LESLYLGNNKITDITV--LSRLTK-LD 159

Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
            L L+ N+ S  I   L     L+ + LS N +     R+LA   NL+ L+L   +  + 
Sbjct: 160 TLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNK 215

Query: 575 FPSWLGTLPDLNVLILKSNKF 595
             +    L   N +       
Sbjct: 216 PINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 46/234 (19%)

Query: 69  HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSS 128
            + ++  ++S     I S   +  L ++  L L  N    ++I P + NL +L +L L  
Sbjct: 47  SIDQIIANNS----DIKSVQGIQYLPNVTKLFLNGNKL--TDIKP-LANLKNLGWLFLDE 99

Query: 129 AAFSGQIP--SEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTI 186
                ++   S + +L KL  L L HN   D        +  L   L  L+ L LG+  I
Sbjct: 100 N----KVKDLSSLKDLKKLKSLSLEHNGISD--------INGL-VHLPQLESLYLGNNKI 146

Query: 187 SSPIPHNLTYLSSLTTLSLSGCDLRGRIP--------------------SSLGNITRLIH 226
           +      L+ L+ L TLSL    +   +P                     +L  +  L  
Sbjct: 147 TDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV 204

Query: 227 LDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN 280
           L+L   +  ++       L     +     +L    P  I +    E+ ++  +
Sbjct: 205 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 57/218 (26%), Positives = 82/218 (37%), Gaps = 24/218 (11%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEI-INLSSLSYLNLSSAA 130
            LDLS + L+  +  S S F    L+ LDL+  +     I      +LS LS L L+   
Sbjct: 32  NLDLSFNPLR-HL-GSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNP 87

Query: 131 FSGQIPSEILE-LSKLAYLDLSHNSYYDPVELRK-PSLGNLADKLTNLKELVLGDVTISS 188
               +       LS L  L            L    +       L  LKEL +    I S
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVET------NLASLEN--FPIGHLKTLKELNVAHNLIQS 138

Query: 189 -PIPHNLTYLSSLTTLSLSGCDLRGRIP----SSLGNITRL-IHLDLSFNKLSDELPTFI 242
             +P   + L++L  L LS   ++  I       L  +  L + LDLS N ++  +    
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA 196

Query: 243 GTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN 280
                LKEL L  N L          L SL+++ L  N
Sbjct: 197 FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 53/271 (19%), Positives = 90/271 (33%), Gaps = 52/271 (19%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
              +   +IP    NL    ++LDLS+N L  L      +F + L +LDL   +   TI 
Sbjct: 15  MELNFY-KIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQ-TIE 68

Query: 529 DNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNV 587
           D   +    L  + L+ N +Q     + +  S+L+ L   +  +  +    +G L  L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 588 LILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYM 647
           L +  N        P+       L  +DLS N+    +     +                
Sbjct: 129 LNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLR---------------- 170

Query: 648 QEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQ 707
                           L            ++P +  ++ LS N  +  I         L+
Sbjct: 171 ---------------VLH-----------QMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 708 ILSLADNSLHGHIPSCLGNLTDLESLDLSNN 738
            L+L  N L          LT L+ + L  N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 41/234 (17%)

Query: 109 SEIPPEIINLSSLSY---LNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPS 165
             +P    NL  LS+    +L S +F            +L  LDLS              
Sbjct: 24  DNLPFSTKNLD-LSFNPLRHLGSYSFFS--------FPELQVLDLSRCE----------- 63

Query: 166 LGNLA----DKLTNLKELVLGDVTISSPIPHNL-TYLSSLTTLSLSGCDLRGRIPSSL-G 219
           +  +       L++L  L+L    I S +     + LSSL  L     +L   + +   G
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLA-SLENFPIG 121

Query: 220 NITRLIHLDLSFNKLSDELP---TFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQV- 275
           ++  L  L+++ N +         F   L +L+ LDL  N +       +  L  +  + 
Sbjct: 122 HLKTLKELNVAHNLIQ-SFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 276 ---DLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
              DLSLN  +  +        +L  L+L +N         F  L SL+ + ++
Sbjct: 180 LSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.1 bits (162), Expect = 6e-12
 Identities = 51/242 (21%), Positives = 89/242 (36%), Gaps = 32/242 (13%)

Query: 214 IPSSLGNI-TRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL 272
           IP    N+     +LDLSFN L         +   L+ LDL +  +      +  +L+ L
Sbjct: 22  IPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 273 EQVDLSLNRFLGKVPSSL-GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF- 330
             + L+ N  +  +       L+ L  L     + +       G+L++L+ L+V      
Sbjct: 79  STLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 331 SGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNT 390
           S ++P   SNLT+L  LD S N                      +    L +L +     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQ------------------SIYCTDLRVLHQMPLLN 179

Query: 391 TSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLS 450
            S     + L    +  I      +  L+ L L +N++   VP  + D  + +   + L 
Sbjct: 180 LS-----LDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFD-RLTSLQKIWLH 232

Query: 451 HN 452
            N
Sbjct: 233 TN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 7e-08
 Identities = 39/202 (19%), Positives = 75/202 (37%), Gaps = 20/202 (9%)

Query: 405 LTEI-PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG-----FD 458
           L  +      +   L++LDL+  +I   +       S+ +   L L+ N +       F 
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQ-SLSHLSTLILTGNPIQSLALGAFS 97

Query: 459 QHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDW--LSIL 516
              +    +    +L   + ++       L+ L++++N +     +    FS+   L  L
Sbjct: 98  GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHL 154

Query: 517 DLQHNKFSGTIPDNLLKG-----NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQI 571
           DL  NK   +I    L+       +   +DLS N +   I         L+ L L  NQ+
Sbjct: 155 DLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL 212

Query: 572 RDIFPSWLGTLPDLNVLILKSN 593
           + +       L  L  + L +N
Sbjct: 213 KSVPDGIFDRLTSLQKIWLHTN 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 40/231 (17%), Positives = 81/231 (35%), Gaps = 37/231 (16%)

Query: 111 IPPEIINLSSLSYLNLSS---AAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLG 167
           +PP    L  L   +L +    AFS         L  ++ + +S +           +L 
Sbjct: 29  LPPSTQTLK-LIETHLRTIPSHAFSN--------LPNISRIYVSIDV----------TLQ 69

Query: 168 NLA----DKLTNLKELVLGDVTISSPIPHN-LTYLSSLTTLSLSGCDLRGRIP--SSLGN 220
            L       L+ +  + + +    + I  + L  L  L  L +    L+   P  + + +
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYS 128

Query: 221 ITRLIHLDLSFNKLSDELP--TFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
                 L+++ N     +P   F G       L L  N  +  +     N   L+ V L+
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 279 LNRFLGKVPSSL--GNLTQLHWLSLASNDFSGELPA-SFGNLRSLRTLDVY 326
            N++L  +      G  +    L ++    +  LP+    +L+ L   + +
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 10/194 (5%)

Query: 197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELP--TFIGTLGSLKELDLL 254
             S  TL L    LR     +  N+  +  + +S +    +L   +F   L  +  +++ 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN-LSKVTHIEIR 88

Query: 255 QNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVP--SSLGNLTQLHWLSLASNDFSGELP 311
                  +       L  L+ + +     L   P  + + +      L +  N +   +P
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 312 A-SFGNLRS-LRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKL 369
             +F  L +   TL +Y   F+  +     N T L  +  + N +   +D D F   +  
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 370 LYHLFLSTNRLSLL 383
              L +S   ++ L
Sbjct: 207 PSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 43/241 (17%), Positives = 82/241 (34%), Gaps = 42/241 (17%)

Query: 401 CSC-DLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNF-LTG-- 456
            +C D+  IP    +    + L L    +   +P      ++ N   + +S +  L    
Sbjct: 18  VTCKDIQRIPSLPPS---TQTLKLIETHLR-TIPSHAFS-NLPNISRIYVSIDVTLQQLE 72

Query: 457 ---FDQHPN-TVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDW 512
              F      T   + +  +LT   P  +  L   L+ L +    L           +D 
Sbjct: 73  SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL-LKFLGIFNTGLKMFPDLTKVYSTDI 131

Query: 513 LSILDLQHNKFSGTIPDNLLKG--NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQ 570
             IL++  N +  +IP N  +G  N    + L +N     +     N + L+ + L  N+
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK 190

Query: 571 IRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF 630
                  +L  +          + F G+              ++D+S+   T  LPS   
Sbjct: 191 -------YLTVIDK--------DAFGGVYS---------GPSLLDVSQTSVT-ALPSKGL 225

Query: 631 Q 631
           +
Sbjct: 226 E 226

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 54  DCCSWDGVQCNENTGHVI--------KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFND 105
           +C   +  +        I         L L  + L+ +I  S +   L ++  + ++ + 
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLR-TI-PSHAFSNLPNISRIYVSIDV 66

Query: 106 FDGSEIPPEI-INLSSLSYLNLSSAAFSGQIPSEILE-LSKLAYLDLSHNSYYDPVELRK 163
               ++      NLS ++++ + +      I  + L+ L  L +L + +        L+ 
Sbjct: 67  TL-QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG------LKM 119

Query: 164 PSLGNLADKLTNLKELVLGDVTISSPIPHN-LTYLSSLT-TLSLSGCDLRGRIPSSLGNI 221
                          L + D    + IP N    L + T TL L        +     N 
Sbjct: 120 FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178

Query: 222 TRLIHLDLSFNKLSDELP--TFIGTLGSLKELDLLQNNLSGELPNSI-GNLASL 272
           T+L  + L+ NK    +    F G       LD+ Q +++  LP+    +L  L
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 35/236 (14%)

Query: 280 NRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPS-SL 338
            + + ++PS   +   L    L           +F NL ++  + V       Q+ S S 
Sbjct: 20  CKDIQRIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76

Query: 339 SNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAV 398
            NL+ ++ ++         +D D       L + L +    L +    T           
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF-LGIFNTGLKMFPDLT----------- 124

Query: 399 SLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG-- 456
                        + +     +L++  N     +P             L L +N  T   
Sbjct: 125 ------------KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172

Query: 457 ---FDQHPNTVNYLVSNNSLTGEIPSWI-CNLSNRLESLDLSYNNLSGLLPQCLGN 508
              F+       YL  N  LT  I       + +    LD+S  +++ L  + L +
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 53/224 (23%)

Query: 559 SNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNK---------FHGLIREPKTDCGFP 609
            + + L L +  +R I       LP+++ + +  +          F+ L           
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL----------S 80

Query: 610 KLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNK 669
           K+  I++   R    +   A +            L++                 L + N 
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALK--------ELPLLKF-----------------LGIFNT 115

Query: 670 G----QMMSYKKIPDILTAVILSSNRFDGEIPT-SISNL-KGLQILSLADNSLHGHIPSC 723
           G      ++     DI   + ++ N +   IP  +   L      L L +N     +   
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174

Query: 724 LGNLTDLESLDLSNNRFSGQIPQQLVE--LTFLEFFNVSDNHFT 765
             N T L+++ L+ N++   I +       +     +VS    T
Sbjct: 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 12/161 (7%)

Query: 174 TNLKELVLGDVTISSPIPHN-LTYLSSLTTLSLSGCDLRGRIPS-SLGNITRLIHLDLSF 231
           +    L L    +S        T L++L +L LS   L   I S +   +  L +LDLS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 232 NKLSDELP--TFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVP-- 287
           N L   L    F   L +L+ L L  N++     N+  ++A L+++ LS N+ + + P  
Sbjct: 98  NHLH-TLDEFLFSD-LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVE 154

Query: 288 --SSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
                  L +L  L L+SN            L +     +Y
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 57/245 (23%), Positives = 88/245 (35%), Gaps = 23/245 (9%)

Query: 199 SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELP--TFIGTLGSLKELDLLQN 256
           +   LS S   L   +P SL + T    LDLS N LS      T    L +L  L L  N
Sbjct: 19  ASNILSCSKQQLP-NVPQSLPSYTA--LLDLSHNNLSRLRAEWTPTR-LTNLHSLLLSHN 74

Query: 257 NLSGELPNSIGNLASLEQVDLSLNRFLGKVPS-SLGNLTQLHWLSLASNDFSGELPASFG 315
           +L+     +   + +L  +DLS N  L  +      +L  L  L L +N        +F 
Sbjct: 75  HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE 133

Query: 316 NLRSLRTLDVYECKFSGQIP----SSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLY 371
           ++  L+ L + + + S + P       + L  L  LD S N        D+  +   +  
Sbjct: 134 DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 372 HLFLSTNRLS-------LLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLA 424
            L+L  N L        L +       S          C      K L N   L+  + +
Sbjct: 193 GLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYC---MHSKKLHNIFSLDFFNCS 249

Query: 425 SNKIN 429
             K +
Sbjct: 250 EYKES 254

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 21/173 (12%)

Query: 94  VHLEWLDLAFNDFDGSEIPPEII--NLSSLSYLNLSSAAFSGQIPSEILE-LSKLAYLDL 150
            +   LDL+ N+   S +  E     L++L  L LS    +  I SE    +  L YLDL
Sbjct: 39  SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 151 SHNSYYDPVELRKPSLGNLA-DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCD 209
           S N       L   +L       L  L+ L+L +  I     +    ++ L  L LS   
Sbjct: 96  SSN------HLH--TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 210 LRGRIP----SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDL-LQNN 257
           +  R P         + +L+ LDLS NKL     T +  L +  +  L L NN
Sbjct: 148 IS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 41/181 (22%), Positives = 63/181 (34%), Gaps = 27/181 (14%)

Query: 109 SEIPPEIINLSSLSYLNLSS----AAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKP 164
             +P     L  LS+ NLS        +         L+ L  L LSHN       L   
Sbjct: 35  QSLPSYTALLD-LSHNNLSRLRAEWTPTR--------LTNLHSLLLSHN------HLNFI 79

Query: 165 SLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPS-SLGNITR 223
           S       + NL+ L L    + +      + L +L  L L    +   +   +  ++ +
Sbjct: 80  SSEAF-VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQ 137

Query: 224 LIHLDLSFNKLSDELP--TFIG--TLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSL 279
           L  L LS N++S   P         L  L  LDL  N L       +  L +  +  L L
Sbjct: 138 LQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

Query: 280 N 280
           +
Sbjct: 197 H 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 52/216 (24%), Positives = 78/216 (36%), Gaps = 45/216 (20%)

Query: 399 SLCSC----------DLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLN 448
           + C C           L  +P+ L    +  LLDL+ N ++    +W     + N   L 
Sbjct: 14  ANCLCASNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPT-RLTNLHSLL 70

Query: 449 LSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWI-CNLSNRLESLDLSYNNLSGLLPQCLG 507
           LSHN L                      I S     + N L  LDLS N+L  L      
Sbjct: 71  LSHNHLN--------------------FISSEAFVPVPN-LRYLDLSSNHLHTLDEFLFS 109

Query: 508 NFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIP----RSLANCSNLE 562
           +    L +L L +N     +  N  +    L+ + LS N +  R P    +       L 
Sbjct: 110 DLQA-LEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLM 166

Query: 563 FLDLGDNQIRDIFPSWLGTLPDL--NVLILKSNKFH 596
            LDL  N+++ +  + L  LP    N L L +N   
Sbjct: 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 7e-11
 Identities = 39/170 (22%), Positives = 61/170 (35%), Gaps = 33/170 (19%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
           S   L   +P    +L +    LDLS+NNLS L                          P
Sbjct: 26  SKQQLP-NVPQ---SLPSYTALLDLSHNNLSRLRA---------------------EWTP 60

Query: 529 DNLLKGNILKVIDLSDNLLQGRIPR-SLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNV 587
             L     L  + LS N L   I   +     NL +LDL  N +  +       L  L V
Sbjct: 61  TRLTN---LHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116

Query: 588 LILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMK 637
           L+L +N    +  +        +L+ + LS+N+ + + P    +  N + 
Sbjct: 117 LLLYNNHIVVV--DRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLP 163

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 39/208 (18%), Positives = 61/208 (29%), Gaps = 57/208 (27%)

Query: 559 SNLEFLDLGDNQIRDIFPSW-LGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLS 617
           S    LDL  N +  +   W    L +L+ L+L  N  + +    +     P LR +DLS
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI--SSEAFVPVPNLRYLDLS 96

Query: 618 KNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKK 677
            N     L    F                                 L             
Sbjct: 97  SNHLH-TLDEFLFS-------------------------------DLQA----------- 113

Query: 678 IPDILTAVILSSNRFDGEIPTSI-SNLKGLQILSLADNSLHGHIP----SCLGNLTDLES 732
               L  ++L +N     +  +   ++  LQ L L+ N +    P         L  L  
Sbjct: 114 ----LEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLML 167

Query: 733 LDLSNNRFSGQIPQQLVELTFLEFFNVS 760
           LDLS+N+        L +L       + 
Sbjct: 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 49/244 (20%), Positives = 85/244 (34%), Gaps = 18/244 (7%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELP--TFIGTLGS 247
           IP +L    +   L      LR     +      L  +++S N + + +    F   L  
Sbjct: 24  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN-LPK 80

Query: 248 LKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVPS-SLGNLTQLHWLSLASND 305
           L E+ + + N    +      NL +L+ + +S    +  +P     +  Q   L +  N 
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNI 139

Query: 306 FSGELPA-SFGNLRS-LRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
               +   SF  L      L + +     +I +S  N T L  L+ S NN   ++  D+F
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 364 LVNHKLLYHLFLSTNRLSLLTKAT-SNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLD 422
                    L +S  R+  L      N      RA S  +  L ++P   +    L    
Sbjct: 199 -HGASGPVILDISRTRIHSLPSYGLENLKK--LRARSTYN--LKKLPTL-EKLVALMEAS 252

Query: 423 LASN 426
           L   
Sbjct: 253 LTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 41/234 (17%), Positives = 69/234 (29%), Gaps = 17/234 (7%)

Query: 396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT 455
           R        +TEIP  L    +   L     K+   + K        +   + +S N + 
Sbjct: 12  RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLR-VIQKGAFS-GFGDLEKIEISQNDVL 67

Query: 456 G------FDQHPNTVN-YLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGN 508
                  F   P      +   N+L   I          L+ L +S   +   LP     
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 509 FSDWLSILDLQHNKFSGTIPDNLLKG--NILKVIDLSDNLLQGRIPRSLANCSNLEFLDL 566
            S    +LD+Q N    TI  N   G      ++ L+ N +Q     +       E    
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185

Query: 567 GDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNR 620
            +N + ++            +L +   + H L           KLR       +
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSL--PSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 52/311 (16%), Positives = 115/311 (36%), Gaps = 21/311 (6%)

Query: 227 LDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKV 286
                +K++ E+P+ +    +  EL  +   L      +      LE++++S N  L  +
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 287 PSS-LGNLTQLHWLSLA-SNDFSGELPASFGNLRSLRTLDVYECKFSGQIPS-SLSNLTH 343
            +    NL +LH + +  +N+     P +F NL +L+ L +        +P     +   
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQ 129

Query: 344 LSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSC 403
              LD   N     ++ + F+        L+L+ N +  +  +  N T          + 
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD-ELNLSDNN 188

Query: 404 DLTEIPKF-LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNF-LTGFDQHP 461
           +L E+P           +LD++  +I+  +P + L+ +++     +  +   L   ++  
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLE-NLKKLRARSTYNLKKLPTLEKLV 246

Query: 462 NTVNYLVSNNS-------LTGEIPSW--ICNLSNRLESLDLSYNNLSGLLPQCLGNFSDW 512
             +   ++  S          +I     ICN S   + +D               N S +
Sbjct: 247 ALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSY 306

Query: 513 LSILDLQHNKF 523
               D+ + +F
Sbjct: 307 SRGFDMTYTEF 317

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.2 bits (172), Expect = 6e-13
 Identities = 45/266 (16%), Positives = 86/266 (32%), Gaps = 35/266 (13%)

Query: 478 PSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI- 536
              IC+ SNR        + ++ + P    +       L     K    I      G   
Sbjct: 3   HHRICHCSNR--VFLCQESKVTEI-PS---DLPRNAIELRFVLTKLR-VIQKGAFSGFGD 55

Query: 537 LKVIDLSDNLLQGRIPRS-LANCSNLEFLDL-GDNQIRDIFPSWLGTLPDLNVLILKSNK 594
           L+ I++S N +   I     +N   L  + +   N +  I P     LP+L  L++ +  
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 595 FHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFN 654
              L           +  ++D+  N     +   +F       +   S + ++       
Sbjct: 116 IKHL--PDVHKIHSLQKVLLDIQDNINIHTIERNSFV-----GLSFESVILWLN------ 162

Query: 655 EGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSI-SNLKGLQILSLAD 713
             NGI +   +  N            +    +  +N  + E+P  +     G  IL ++ 
Sbjct: 163 -KNGIQEIHNSAFNG---------TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISR 211

Query: 714 NSLHGHIPSCLGNLTDLESLDLSNNR 739
             +H      L NL  L +    N +
Sbjct: 212 TRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 49/281 (17%), Positives = 90/281 (32%), Gaps = 50/281 (17%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
             + +T EIPS   +L      L      L  +       F D L  +++  N     I 
Sbjct: 17  QESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIE 71

Query: 529 DNLLKGNI-LKVIDLSD-NLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586
            ++      L  I +   N L    P +  N  NL++L + +  I+ +            
Sbjct: 72  ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131

Query: 587 VLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRY 646
           +L ++ N     I          +  I+ L+KN    ++ + AF            EL  
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNG------TQLDELNL 184

Query: 647 MQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPD-------ILTAVILSSNRFDGEIPTS 699
                   + N +                +++P+           + +S  R    +P+ 
Sbjct: 185 S-------DNNNL----------------EELPNDVFHGASGPVILDISRTRIH-SLPSY 220

Query: 700 I-SNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNR 739
              NLK L+  S  +      +P+ L  L  L    L+   
Sbjct: 221 GLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 49/277 (17%), Positives = 88/277 (31%), Gaps = 27/277 (9%)

Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLST 377
           R+   L     K       + S    L  ++ S N+    ++ D+F    KL        
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 378 NRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLK-NQHHLELLDLASNKINGKVPKWL 436
           N L  +            + + + +  +  +P   K +     LLD+  N     + +  
Sbjct: 90  NNLLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 437 LDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYN 496
                     L L+ N +                     EI +   N +   E      N
Sbjct: 149 FVGLSFESVILWLNKNGIQ--------------------EIHNSAFNGTQLDELNLSDNN 188

Query: 497 NLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLA 556
           NL  L        S    ILD+   +   ++P   L+ N+ K+   S   L+ ++P +L 
Sbjct: 189 NLEELPNDVFHGAS-GPVILDISRTRIH-SLPSYGLE-NLKKLRARSTYNLK-KLP-TLE 243

Query: 557 NCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSN 593
               L    L        F +W   + +L+ +  KS 
Sbjct: 244 KLVALMEASLTYPSHCCAFANWRRQISELHPICNKSI 280

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 6/187 (3%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSS-LGNITRLIHLDLS-F 231
            N  EL      +        +    L  + +S  D+   I +    N+ +L  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 232 NKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPS-SL 290
           N L    P     L +L+ L +    +         +      +D+  N  +  +   S 
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 291 GNLT-QLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPS-SLSNLTHLSFLD 348
             L+ +   L L  N    E+  S  N   L  L++ +     ++P+      +    LD
Sbjct: 150 VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 349 FSLNNFS 355
            S     
Sbjct: 209 ISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 43/235 (18%), Positives = 75/235 (31%), Gaps = 18/235 (7%)

Query: 95  HLEWLDLAFNDFDGSEIPPEI-INLSSLSYLNLSSAAFSGQIPSEILE-LSKLAYLDLSH 152
           +   L           I          L  + +S       I +++   L KL  + +  
Sbjct: 31  NAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 153 NSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG 212
            +      L   +       L NL+ L++ +  I      +  +      L +       
Sbjct: 89  AN-----NLLYINPEAF-QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 213 RIPSSL--GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI-GNL 269
            I  +   G     + L L+ N +  E+         L EL+L  NN   ELPN +    
Sbjct: 143 TIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201

Query: 270 ASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLD 324
           +    +D+S  R        L NL +L   S  +     +LP +   L +L    
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEAS 252

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 71.5 bits (175), Expect = 6e-13
 Identities = 84/531 (15%), Positives = 164/531 (30%), Gaps = 85/531 (16%)

Query: 119 SSLSYLNLSSAAFSGQIPSEILELS----KLAYLDLSHNSYYDPVELRKPSLGNLADKLT 174
              +  NL    + G +   I  +S     L  + L      D        L  +A    
Sbjct: 77  PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD------CLELIAKSFK 130

Query: 175 NLKELVLGDVT-ISSP-IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNI----TRLIHLD 228
           N K LVL      S+  +        +L  L L   D+       L +     T L+ L+
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190

Query: 229 LS--FNKLSDE-LPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSL------ 279
           +S   +++S   L   +    +LK L L +     +L   +     LE++          
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250

Query: 280 NRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG----QIP 335
                 +  +L    +L  LS   +     LPA +     L TL++           ++ 
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL 310

Query: 336 SSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRF 395
                L  L      + ++     L++     K L  L +  +    + +     T    
Sbjct: 311 CQCPKLQRLW-----VLDYIEDAGLEVLASTCKDLRELRVFPSE-PFVMEPNVALTEQGL 364

Query: 396 RAVSLCSCDLTEIPKF------------LKNQHHLELLDLASNKINGKVPKWLLDPSMQN 443
            +VS+    L  +  F             +N+ ++    L            +++P   +
Sbjct: 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC-----------IIEPKAPD 413

Query: 444 FGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP 503
           +  L           +H   +  L  +  LT ++  +I   + ++E L +++   S L  
Sbjct: 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473

Query: 504 QCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEF 563
             + +  D L  L+++   F                      LL        +    +  
Sbjct: 474 HHVLSGCDSLRKLEIRDCPFG------------------DKALLAN-----ASKLETMRS 510

Query: 564 LDLGDNQIRDIFPSWLGT-LPDLNVLILKSNKFHGLIREPKTDCGFPKLRI 613
           L +    +       LG  +P LNV ++      G        C   ++ I
Sbjct: 511 LWMSSCSVSFGACKLLGQKMPKLNVEVIDER---GAPDSRPESCPVERVFI 558

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 57/363 (15%), Positives = 115/363 (31%), Gaps = 31/363 (8%)

Query: 72  KLDLS-SSCLQGSINSSSSLFK-LVHLEWLDLA--FNDFDGSEIPPEIINLSSLSYLNLS 127
           +LDL  S     S +  S        L  L+++   ++   S +   +    +L  L L+
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219

Query: 128 SAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTIS 187
            A    ++ + +    +L  L     +     ++    L         L+ L      + 
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP 278

Query: 188 SPIPHNLTYLSSLTTLSLSGCDLRGR-IPSSLGNITRLIHLDLSFNKLSDE-LPTFIGTL 245
           + +P   +  S LTTL+LS   ++   +   L    +L  L +  + + D  L     T 
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDAGLEVLASTC 337

Query: 246 GSLKELDLLQNNLSGELPNS----------IGNLASLEQVDLSLNRF----LGKVPSSLG 291
             L+EL +  +      PN                 LE V     +     L  +  +  
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397

Query: 292 NLTQLH--WLSLASNDFSGELPASFG------NLRSLRTLDVYECKFSGQIPSSLSNLTH 343
           N+T+     +   + D+    P   G      + + LR L +             +    
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKK 457

Query: 344 LSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSC 403
           +  L  +    S    +   L     L  L +            + +     R++ + SC
Sbjct: 458 MEMLSVAFAGDSDLG-MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

Query: 404 DLT 406
            ++
Sbjct: 517 SVS 519

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.6 bits (172), Expect = 1e-12
 Identities = 42/243 (17%), Positives = 79/243 (32%), Gaps = 15/243 (6%)

Query: 62  QCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSL 121
           +C             S+  +       S+ K   L+    +  +    E+ PE       
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKEL--QELEPENKWCLLT 387

Query: 122 SYLNLSSAAFSGQIPSEILELSKLAYLDLSH-NSYYDPVELRKPSLGNLADKLTNLKELV 180
             L + +          +   S L  +D        D           L  +  +++ L 
Sbjct: 388 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH 447

Query: 181 LGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPT 240
           L    ++     +L  L  +T L LS   LR  +P +L  +  L  L  S N L + +  
Sbjct: 448 LAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDG 503

Query: 241 FIGTLGSLKELDLLQNNLSG-ELPNSIGNLASLEQVDLSLNR------FLGKVPSSLGNL 293
            +  L  L+EL L  N L        + +   L  ++L  N          ++   L ++
Sbjct: 504 -VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562

Query: 294 TQL 296
           + +
Sbjct: 563 SSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 3e-12
 Identities = 58/367 (15%), Positives = 103/367 (28%), Gaps = 44/367 (11%)

Query: 3   WPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQ 62
           W L   +    L     S    E+        P+    +  +             W    
Sbjct: 234 WLLGRAEPHDVLCCVHVS--REEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291

Query: 63  CNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLE-WLDLAFNDFDGSEIPPEIINLSSL 121
                 HV   DL ++ L   +   +        +   +             +      L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 122 SYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVL 181
               LS    S  + SE+    +L  L+  +             L  +   +  L  L+ 
Sbjct: 352 FRCELS-VEKSTVLQSELESCKELQELEPENK----------WCLLTIILLMRALDPLLY 400

Query: 182 GDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTF 241
                       L Y S+L  +                +  R  +LD   +K   E    
Sbjct: 401 E--------KETLQYFSTLKAV----------------DPMRAAYLDDLRSKFLLENSVL 436

Query: 242 IGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSL 301
                 ++ L L   +L+  L + +  L  +  +DLS NR L  +P +L  L  L  L  
Sbjct: 437 KMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQA 493

Query: 302 ASNDFSGELPASFGNLRSLRTLDVYECKFSG-QIPSSLSNLTHLSFLDFSLNNFSGKMDL 360
           + N     +     NL  L+ L +   +         L +   L  L+   N+   +  +
Sbjct: 494 SDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

Query: 361 DIFLVNH 367
              L   
Sbjct: 552 QERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.2 bits (166), Expect = 6e-12
 Identities = 44/228 (19%), Positives = 79/228 (34%), Gaps = 19/228 (8%)

Query: 400 LCSCDLTEIPKFLKNQHHLELLDLASNKINGKVP-----KWLLDPSMQNFGHLNLSHNFL 454
           L         +       L   +L+  K           K L +   +N   L      +
Sbjct: 333 LLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 392

Query: 455 TGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLS 514
              D        L   ++L    P     L +   S  L  N++  +    +        
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL-RSKFLLENSVLKMEYADV-------R 444

Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
           +L L H     T+  +L +  ++  +DLS N L+  +P +LA    LE L   DN + ++
Sbjct: 445 VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV 501

Query: 575 FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
               +  LP L  L+L +N+        +     P+L +++L  N   
Sbjct: 502 DG--VANLPRLQELLLCNNRLQQS-AAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.7 bits (149), Expect = 7e-10
 Identities = 46/291 (15%), Positives = 79/291 (27%), Gaps = 62/291 (21%)

Query: 303 SNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDI 362
             D              L   ++   + S  + S L +   L   +    N    + + +
Sbjct: 334 LKDRPECWCRDSATDEQLFRCEL-SVEKSTVLQSELESCKEL--QELEPENKWCLLTIIL 390

Query: 363 FLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLD 422
            +     L +   +    S L                L S  L E          + +L 
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDP---MRAAYLDDLRSKFLLENSVLKMEYADVRVLH 447

Query: 423 LASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWIC 482
           LA   +   +    L+  +    HL+LSHN L                      +P  + 
Sbjct: 448 LAHKDLT-VLCH--LE-QLLLVTHLDLSHNRLR--------------------ALPPALA 483

Query: 483 NLSNRLESLDLSYNNLSGLLP-QCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVID 541
            L   LE L  S N L  +     L      L  L L +N+                   
Sbjct: 484 ALRC-LEVLQASDNALENVDGVANLPR----LQELLLCNNRLQ----------------Q 522

Query: 542 LSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSW---LGTLPDLNVLI 589
            +         + L +C  L  L+L  N +             LP ++ ++
Sbjct: 523 SAA-------IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 1e-08
 Identities = 43/283 (15%), Positives = 81/283 (28%), Gaps = 43/283 (15%)

Query: 222 TRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNR 281
             L    L+                S KE  LL++               L + +LS+ +
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEK 360

Query: 282 FLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNL 341
               + S L +  +L  L   +      +      L  L            +     S L
Sbjct: 361 -STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK--------ETLQYFSTL 411

Query: 342 THLSFLDFSLNNFS---GKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAV 398
             +  +  +  +       ++  +  + +  +  L L+   L++L              +
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL---LVTHL 468

Query: 399 SLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDP--SMQNFGHLNLSHNFLTG 456
            L    L  +P  L     LE+L  + N +        +D   ++     L L +N L  
Sbjct: 469 DLSHNRLRALPPALAALRCLEVLQASDNALEN------VDGVANLPRLQELLLCNNRLQQ 522

Query: 457 FDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLS 499
                  +  LVS   L                 L+L  N+L 
Sbjct: 523 SAA----IQPLVSCPRLV---------------LLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 3e-07
 Identities = 51/379 (13%), Positives = 98/379 (25%), Gaps = 44/379 (11%)

Query: 392 SHRFRAVSLCSCDLTEIPKFLKNQHHLEL-LDLASNKINGKVPKWLLDPSMQNFGHLNLS 450
            +R   +          P+    ++ L   L+L  N      P    D S   + H  L 
Sbjct: 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF-TDPN---DQSAWFY-HRWLL 236

Query: 451 HNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFS 510
                        V+   +  S+    P  + +    L  +                N  
Sbjct: 237 GRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296

Query: 511 DWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSL----ANCSNLEFLDL 566
             + + DL     +  +P +  +          + +L    P       A    L   +L
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCEL 356

Query: 567 GDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLP 626
              +   +  S L +  +L  L  ++           T     +     L +        
Sbjct: 357 SVEKS-TVLQSELESCKELQELEPENKWCL------LTIILLMRALDPLLYEKE------ 403

Query: 627 SMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVI 686
                               ++ V P          S  +     +        +L    
Sbjct: 404 -------------TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH--- 447

Query: 687 LSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQ 746
           L+       +   +  L  +  L L+ N L   +P  L  L  LE L  S+N     +  
Sbjct: 448 LAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD- 502

Query: 747 QLVELTFLEFFNVSDNHFT 765
            +  L  L+   + +N   
Sbjct: 503 GVANLPRLQELLLCNNRLQ 521

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 50/237 (21%), Positives = 83/237 (35%), Gaps = 24/237 (10%)

Query: 117 NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176
            L++    NL   + +        ELS +   +  +++           L  +    TNL
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--------LAGM-QFFTNL 65

Query: 177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD 236
           KEL L    IS  +   L  L+ L  LS++   L+            L  L L  N+L D
Sbjct: 66  KELHLSHNQISD-LS-PLKDLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRD 120

Query: 237 ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL 296
                +  L +L+ L +  N L   +   +G L+ LE +DL  N         L  L ++
Sbjct: 121 --TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEI--TNTGGLTRLKKV 174

Query: 297 HWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNN 353
           +W+ L       E       L    T+   + ++    P  +SN             
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 44/211 (20%), Positives = 75/211 (35%), Gaps = 40/211 (18%)

Query: 412 LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNN 471
                +    +L    +   V +      +    + N  ++ +                 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQ----KELSGVQNFNGDNSNIQ---------------- 54

Query: 472 SLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNL 531
           SL G     +   +N L+ L LS+N +S L P  L + +  L  L +  N+         
Sbjct: 55  SLAG-----MQFFTN-LKELHLSHNQISDLSP--LKDLTK-LEELSVNRNRLKNLNGIPS 105

Query: 532 LKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILK 591
                L  + L +N L+     SL +  NLE L + +N+++ I    LG L  L VL L 
Sbjct: 106 AC---LSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLH 158

Query: 592 SNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
            N+    I          K+  IDL+  +  
Sbjct: 159 GNE----ITNTGGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 17/193 (8%)

Query: 193 NLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELD 252
               L++    +L    +      S   ++ + + +   + +       +    +LKEL 
Sbjct: 14  PDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 253 LLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPA 312
           L  N +S +L   + +L  LE++ ++ NR   K  + + +   L  L L +N+       
Sbjct: 70  LSHNQIS-DLSP-LKDLTKLEELSVNRNRL--KNLNGIPSAC-LSRLFLDNNELRD--TD 122

Query: 313 SFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYH 372
           S  +L++L  L +   K        L  L+ L  LD   N  +   +    L   K +  
Sbjct: 123 SLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEIT---NTG-GLTRLKKVNW 176

Query: 373 LFLSTNRLSLLTK 385
           + L+  +      
Sbjct: 177 IDLTGQKCVNEPV 189

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 31/226 (13%)

Query: 69  HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSS 128
           + +K +L       S+    S  +L  ++  +   ++     +   +   ++L  L+LS 
Sbjct: 20  NAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNI--QSLAG-MQFFTNLKELHLSH 72

Query: 129 AAFSGQIP--SEILELSKLAYLDLSHNSYYDPVELRKPSLGNLA------------DKLT 174
                QI   S + +L+KL  L ++ N   +   +    L  L               L 
Sbjct: 73  ----NQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLK 128

Query: 175 NLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKL 234
           NL+ L + +  + S I   L +LS L  L L G ++       L  + ++  +DL+  K 
Sbjct: 129 NLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKC 184

Query: 235 SDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN 280
            +E   +   L     +           P  I N  S     +   
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 45/279 (16%), Positives = 81/279 (29%), Gaps = 88/279 (31%)

Query: 316 NLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFL 375
            L +    ++ +   +     S   L+ +   +   +N      L   +     L  L L
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLA-GMQFFTNLKELHL 70

Query: 376 STNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKW 435
           S N++S L+                           LK+   LE L +  N++       
Sbjct: 71  SHNQISDLS--------------------------PLKDLTKLEELSVNRNRLK------ 98

Query: 436 LLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSY 495
               ++       LS  FL               NN L       + +L N LE L +  
Sbjct: 99  ----NLNGIPSACLSRLFL--------------DNNELRD--TDSLIHLKN-LEILSIRN 137

Query: 496 NNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSL 555
           N L  ++   LG  S  L +LDL  N+ +                +             L
Sbjct: 138 NKLKSIVM--LGFLSK-LEVLDLHGNEIT----------------NTGG----------L 168

Query: 556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNK 594
                + ++DL   +  +    +   L   N +     +
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 31/245 (12%), Positives = 69/245 (28%), Gaps = 58/245 (23%)

Query: 518 LQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPS 577
            +    +   PD  L        +L    +   +       S ++  +  ++ I+ +   
Sbjct: 4   QRPTPINQVFPDPGLAN--AVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG- 58

Query: 578 WLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMK 637
            +    +L  L L  N+    I +        KL  + +++NR                 
Sbjct: 59  -MQFFTNLKELHLSHNQ----ISDLSPLKDLTKLEELSVNRNRLK--------------- 98

Query: 638 VVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDI--------LTAVILSS 689
                        +       +    L            ++ D         L  + + +
Sbjct: 99  ------------NLNGIPSACLSRLFL---------DNNELRDTDSLIHLKNLEILSIRN 137

Query: 690 NRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLV 749
           N+    I   +  L  L++L L  N +       L  L  +  +DL+  +   +  +   
Sbjct: 138 NKLK-SIV-MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQP 193

Query: 750 ELTFL 754
           EL   
Sbjct: 194 ELYIT 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.1 bits (164), Expect = 4e-12
 Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 19/199 (9%)

Query: 109 SEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168
           + +PP++      + L+LS         + ++  ++L  L+L         EL K  +  
Sbjct: 23  TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA------ELTKLQVD- 73

Query: 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLD 228
               L  L  L L    + S +P     L +LT L +S   L      +L  +  L  L 
Sbjct: 74  --GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 229 LSFNKLSDELP--TFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGK 285
           L  N+L   LP          L++L L  NNL+ ELP  +   L +L+ + L  N  L  
Sbjct: 131 LKGNELK-TLPPGLLTP-TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS-LYT 186

Query: 286 VPSSLGNLTQLHWLSLASN 304
           +P        L +  L  N
Sbjct: 187 IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 57/261 (21%), Positives = 90/261 (34%), Gaps = 58/261 (22%)

Query: 503 PQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLE 562
           P C  +       ++      +  +P +L K     ++ LS+NLL      +L   + L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 563 FLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
            L+L   ++  +     GTLP L  L L  N+   L   P      P L ++D+S NR T
Sbjct: 59  QLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLT 113

Query: 623 GKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDIL 682
             LP  A +           EL+ +                                   
Sbjct: 114 -SLPLGALR--------GLGELQELY---------------------------------- 130

Query: 683 TAVILSSNRFDGEIPTSI-SNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS 741
               L  N     +P  + +    L+ LSLA+N+L       L  L +L++L L  N   
Sbjct: 131 ----LKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 742 GQIPQQLVELTFLEFFNVSDN 762
             IP+       L F  +  N
Sbjct: 186 T-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 19/181 (10%)

Query: 447 LNLSHNFLTG-----FDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGL 501
           L+LS N L          +       +    LT ++      L   L +LDLS+N L  L
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDG-TLPV-LGTLDLSHNQLQSL 92

Query: 502 --LPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPRSLANC 558
             L Q L      L++LD+  N+ + ++P   L+G   L+ + L  N L+   P  L   
Sbjct: 93  PLLGQTLPA----LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 559 SNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSK 618
             LE L L +N + ++    L  L +L+ L+L+ N  + +   PK   G   L    L  
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI---PKGFFGSHLLPFAFLHG 204

Query: 619 N 619
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 53/278 (19%), Positives = 82/278 (29%), Gaps = 80/278 (28%)

Query: 268 NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYE 327
            +AS  +V+    R L  +P  L        L L+ N       A+      L  L++  
Sbjct: 8   KVASHLEVNCD-KRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 328 CKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKAT 387
            + +                   L            L     L  L LS N+L       
Sbjct: 65  AELT------------------KLQVDGT-------LPV---LGTLDLSHNQL------- 89

Query: 388 SNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHL 447
                               +P   +    L +LD++ N++   +P   L   +     L
Sbjct: 90  ------------------QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALR-GLGELQEL 129

Query: 448 NLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLG 507
            L  N L                      +P  +   + +LE L L+ NNL+ L    L 
Sbjct: 130 YLKGNELK--------------------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 508 NFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDN 545
              + L  L LQ N    TIP      ++L    L  N
Sbjct: 170 GLEN-LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 678 IPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSN 737
           +P   T + LS N        ++     L  L+L    L   +    G L  L +LDLS+
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQV-DGTLPVLGTLDLSH 86

Query: 738 NRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDK 779
           N+    +P     L  L   +VS N  T  +P G        
Sbjct: 87  NQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLG----ALRG 122

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 58/339 (17%), Positives = 100/339 (29%), Gaps = 58/339 (17%)

Query: 120 SLSYLNLSSAAFSGQ----IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTN 175
           S+   +L   A + +    + + +LE   +  + LS N+       R   L        +
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-GTEAAR--WLSENIASKKD 61

Query: 176 LKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLS 235
           L+     D+            L  L                +L    +L  + LS N   
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLL--------------QALLKCPKLHTVRLSDNAFG 107

Query: 236 DE----LPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLG 291
                 L  F+     L+ L L  N L    P +   +A      L              
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARA----LQELAVN----KKAK 156

Query: 292 NLTQLHWLSLASNDFSGE----LPASFGNLRSLRTLDVYECKFSGQ-----IPSSLSNLT 342
           N   L  +    N            +F + R L T+ + +     +     +   L+   
Sbjct: 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216

Query: 343 HLSFLDFSLNNFS--GKMDLDIFLVNHKLLYHLFLSTNRLS-----LLTKATSNTTSHRF 395
            L  LD   N F+  G   L I L +   L  L L+   LS      +  A S   +   
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276

Query: 396 RAVSLCSCDLTE-----IPKFLK-NQHHLELLDLASNKI 428
           + + L   ++       +   +      L  L+L  N+ 
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 66/359 (18%), Positives = 116/359 (32%), Gaps = 78/359 (21%)

Query: 247 SLKELDLLQNNLSGE----LPNSIGNLASLEQVDLSLNRF-------LGKVPSSLGNLTQ 295
           S++   L  + ++ E    +   +    S++++ LS N         L +  +S  +L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 296 LHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS 355
             +  + +     E+P +   L                   +L     L  +  S N F 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLL-----------------LQALLKCPKLHTVRLSDNAFG 107

Query: 356 --GKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLK 413
              +  L  FL  H  L HL+L  N L           +    A +L    +    K  K
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLG--------PQAGAKIARALQELAVN---KKAK 156

Query: 414 NQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSL 473
           N   L  +    N++         + SM+ +     SH  L             +  N +
Sbjct: 157 NAPPLRSIICGRNRLE--------NGSMKEWAKTFQSHRLLHTVK---------MVQNGI 199

Query: 474 TGE-IPSWICNL---SNRLESLDLSYNNLSG----LLPQCLGNFSDWLSILDLQHNKFSG 525
             E I   +         L+ LDL  N  +      L   L ++ + L  L L     S 
Sbjct: 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN-LRELGLNDCLLSA 258

Query: 526 T----IPDNLLKGN--ILKVIDLSDNLLQGRIPRSLA-----NCSNLEFLDLGDNQIRD 573
                + D   K     L+ + L  N ++    R+L         +L FL+L  N+  +
Sbjct: 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 43/277 (15%), Positives = 75/277 (27%), Gaps = 43/277 (15%)

Query: 318 RSLRTLDVYECKFSGQ----IPSSLSNLTHLSFLDFSLNNFS--GKMDLDIFLVNHKLLY 371
            S+    +     + +    + + L     +  +  S N         L   + + K L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 372 HLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGK 431
               S                   R        L  + + L     L  + L+ N     
Sbjct: 64  IAEFSDIFTG--------------RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109

Query: 432 VPKWLLD--PSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLE 489
             + L+D         HL L +N L      P     +    +L     +     +  L 
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLG-----PQAGAKIAR--ALQELAVNKKAKNAPPLR 162

Query: 490 SLDLSYNNLSG----LLPQCLGNFSDWLSILDLQHNKFS----GTIPDNLLKGNI-LKVI 540
           S+    N L         +   +    L  + +  N         +    L     LKV+
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRL-LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 541 DLSDNLLQGR----IPRSLANCSNLEFLDLGDNQIRD 573
           DL DN         +  +L +  NL  L L D  +  
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 40/283 (14%), Positives = 73/283 (25%), Gaps = 55/283 (19%)

Query: 74  DLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDF---DGSEIPPEIINLSSLSYLNLS--- 127
            +     +       +L K   L  + L+ N F       +   +   + L +L L    
Sbjct: 74  RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133

Query: 128 ----------SAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL---T 174
                      A     +  +      L  +    N       L   S+   A       
Sbjct: 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR------LENGSMKEWAKTFQSHR 187

Query: 175 NLKELVL-----GDVTISSPIPHNLTYLSSLTTLSLSGCDLRGR----IPSSLGNITRLI 225
            L  + +         I   +   L Y   L  L L            +  +L +   L 
Sbjct: 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 226 HLDLSFNKLSDE--------LPTFIGTLGSLKELDLLQNNLSGE----LPNSIG-NLASL 272
            L L+   LS                    L+ L L  N +  +    L   I   +  L
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENI--GLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 273 EQVDLSLNRF------LGKVPSSLGNLTQLHWLSLASNDFSGE 309
             ++L+ NRF      + ++        +     L   +   +
Sbjct: 306 LFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 62/386 (16%), Positives = 115/386 (29%), Gaps = 115/386 (29%)

Query: 404 DLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLD--PSMQNFGHLNLSHNFLTGFDQHP 461
           D   +   L     ++ + L+ N I  +  +WL +   S ++      S  F        
Sbjct: 20  DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT------- 72

Query: 462 NTVNYLVSNNSLTGEIPSWICNLSN------RLESLDLSYNNLSGLLPQCLGNF---SDW 512
                      +  EIP  +  L        +L ++ LS N       + L +F      
Sbjct: 73  ---------GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 513 LSILDLQHNKFS-------------GTIPDNLLKGNILKVIDLSDNLLQGR----IPRSL 555
           L  L L +N                  +         L+ I    N L+        ++ 
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIID 615
            +   L  + +  N IR       G    L    L                   +L+++D
Sbjct: 184 QSHRLLHTVKMVQNGIRPE-----GIEHLLLEG-LAYC---------------QELKVLD 222

Query: 616 LSKNRFT---GKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQM 672
           L  N FT       ++A + W  ++ +  ++               +       S +G  
Sbjct: 223 LQDNTFTHLGSSALAIALKSWPNLRELGLND-------------CLL-------SARG-- 260

Query: 673 MSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHG----HIPSCLG-NL 727
                   ++ A     N              GLQ L L  N +       + + +   +
Sbjct: 261 -----AAAVVDAFSKLEN-------------IGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 728 TDLESLDLSNNRFS--GQIPQQLVEL 751
            DL  L+L+ NRFS    +  ++ E+
Sbjct: 303 PDLLFLELNGNRFSEEDDVVDEIREV 328

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 40/315 (12%), Positives = 81/315 (25%), Gaps = 91/315 (28%)

Query: 484 LSNR-LESLDLSYNNLSG----LLPQCLGNFSDWLSILDLQHNKFSGT----IPDNLLKG 534
           ++   +E   L  + ++      +   L      +  + L  N         + +N+   
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASK 59

Query: 535 NILKVIDLSDNLLQGRIP-----------RSLANCSNLEFLDLGDNQIRDIFPSWLGTLP 583
             L++ + SD    GR+            ++L  C  L  + L DN         L    
Sbjct: 60  KDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF- 117

Query: 584 DLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASE 643
                 L  +                 L  + L  N                        
Sbjct: 118 ------LSKHT---------------PLEHLYLHNNGLG------------------PQA 138

Query: 644 LRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGE----IPTS 699
              +   +     N                   K    L ++I   NR +         +
Sbjct: 139 GAKIARALQELAVN----------------KKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 700 ISNLKGLQILSLADNSLHGH-----IPSCLGNLTDLESLDLSNNRFSGQ----IPQQLVE 750
             + + L  + +  N +        +   L    +L+ LDL +N F+      +   L  
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 751 LTFLEFFNVSDNHFT 765
              L    ++D   +
Sbjct: 243 WPNLRELGLNDCLLS 257

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 47/282 (16%)

Query: 338 LSNLTHLSFLDFSLNNFS--GKMDL-DIFLVNHKLLYHLFLSTNRLS-----LLTKATSN 389
            S    ++ LD SLNN      ++L   F      +  L LS N L       L +  + 
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 390 TTSHRFRAVSLCSCDLTE-----IPKFLKNQH-HLELLDLASNKINGKVPKWL---LDPS 440
             ++   +++L    L+      + K L      + +LDL  N  + K            
Sbjct: 78  IPAN-VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 441 MQNFGHLNLSHNFLT---------GFDQHPNTVNYL-VSNNSLTGE----IPSWICNLSN 486
             +   LNL  N L               P  VN L +  N+L  +    +  ++ ++  
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 487 RLESLDLSYNNLS----GLLPQCLGNFSDWLSILDLQHNKFSGTIPDNL---LKGNI-LK 538
            + SLDLS N L       L     +  + +  L+L  N   G   +NL         L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 539 VIDLSDNLLQG-------RIPRSLANCSNLEFLDLGDNQIRD 573
            + L  ++++         +  +  N   +  +D    +I  
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 51/342 (14%), Positives = 102/342 (29%), Gaps = 65/342 (19%)

Query: 143 SKLAYLDLSHNSYYDPVELRKPSLGNLADKL----TNLKELVLGDVTISSPIPHNLTYL- 197
             +  LDLS N+      L   S   L         ++  L L   ++       L  + 
Sbjct: 22  HGVTSLDLSLNN------LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 198 ----SSLTTLSLSGCDLRGRIPSSLGNI-----TRLIHLDLSFNKLSDELPTFIGTL--- 245
               +++T+L+LSG  L  +    L          +  LDL +N  S +  +        
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 246 --GSLKELDLLQNNLSGELPNSIGNL-----ASLEQVDLSLNRF-------LGKVPSSLG 291
              S+  L+L  N+L  +  + +  +     A++  ++L  N         L K  +S  
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS-- 193

Query: 292 NLTQLHWLSLASNDFSGE-----LPASFGNLRSLRTLDVYECKFSGQ----IPSSLSNLT 342
               +  L L++N    +               + +L++      G     +     +L 
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 343 HLSFLDFSLNNFS-----GKMDLDIFLVNHKLLYHLFLSTNRLS-----LLTKATSNTTS 392
           HL  +    +            L     N + +  +  +   +       ++       S
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRE-LS 312

Query: 393 HRFRAVSLCSCDLTEIPKF------LKNQHHLELLDLASNKI 428
            +    SL +  L    K       L     L         +
Sbjct: 313 GKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 56/338 (16%), Positives = 112/338 (33%), Gaps = 58/338 (17%)

Query: 218 LGNITRLIHLDLSFNKLSDE-----LPTFIGTLGSLKELDLLQNNLSGELPNSIG----- 267
                 +  LDLS N L        +  F  T  S+  L+L  N+L  +  + +      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 268 NLASLEQVDLSLNRFLGKVPSSLGNL-----TQLHWLSLASNDFSGE----LPASFGNL- 317
             A++  ++LS N    K    L          +  L L  NDFS +       +F NL 
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 318 RSLRTLDVYECKFSGQ----IPSSLSNL-THLSFLDFSLNNFS--GKMDL-DIFLVNHKL 369
            S+ +L++       +    +   L+ +  +++ L+   NN +     +L          
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 370 LYHLFLSTNRL-----SLLTKATSNTTSHRFRAVSLCSCDLTE-----IPKFLKNQHHLE 419
           +  L LS N L     + L    S+  +H   +++LC   L       +     +  HL+
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNH-VVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 420 LLDLASNKINGKVPKWLLD-----PSMQNFGHLNLSHNFLT-----GFDQHPNTVNYLVS 469
            + L  + +     +         P++Q    ++ +   +              ++    
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 470 NNSLTGEIPSWIC---------NLSNRLESLDLSYNNL 498
             SL  +   +           N+ + L     +   L
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 45/232 (19%), Positives = 73/232 (31%), Gaps = 53/232 (22%)

Query: 408 IPKFLKNQHHLELLDLASNKINGKVPKWL---LDPSMQNFGHLNLSHNFLTGFDQHPNTV 464
           + +F    H +  LDL+ N +       L      +  +   LNLS N L          
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-----FKNS 68

Query: 465 NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSG----LLPQCLGNFSDWLSILDLQH 520
           + LV            +  +   + SL+LS N LS      L + L      +++LDL  
Sbjct: 69  DELVQ----------ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW 118

Query: 521 NKFSGT----IPDNLLKGN-ILKVIDLSDNLLQGRIPRSLA-----NCSNLEFLDLGDNQ 570
           N FS                 +  ++L  N L  +    L        +N+  L+L  N 
Sbjct: 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178

Query: 571 IRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
           +     + L                  L   P +      +  +DLS N   
Sbjct: 179 LASKNCAELAK---------------FLASIPAS------VTSLDLSANLLG 209

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 50/297 (16%), Positives = 86/297 (28%), Gaps = 66/297 (22%)

Query: 488 LESLDLSYNNLSG----LLPQCLGNFSDWLSILDLQHNKFSGT----IPDNLLKGNI-LK 538
           + SLDLS NNL       L Q   N    ++ L+L  N         +   L      + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 539 VIDLSDNLLQGRIPRSLA-----NCSNLEFLDLGDNQIRDIFPSWLGTL-----PDLNVL 588
            ++LS N L  +    L          +  LDLG N       S            +  L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 589 ILKSNKFH---------GLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVV 639
            L+ N             L   P        +  ++L  N           +    +  +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPAN------VNSLNLRGNNLA---SKNCAELAKFLASI 194

Query: 640 NAS----ELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGE 695
            AS    +L            N +   S           +  IP+ + ++ L  N   G 
Sbjct: 195 PASVTSLDLS----------ANLLGLKSYAELAYI----FSSIPNHVVSLNLCLNCLHGP 240

Query: 696 ----IPTSISNLKGLQILSLADNSLHG-------HIPSCLGNLTDLESLDLSNNRFS 741
               +     +LK LQ + L  + +          + +   N+  +  +D +     
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 4e-11
 Identities = 71/467 (15%), Positives = 137/467 (29%), Gaps = 136/467 (29%)

Query: 284 GKVPSSLGNLT------------QLHWLSLASNDFSGELPASFGNL-RSLRTLDVYECKF 330
           GK  + +                ++ WL+L + +    +      L   +          
Sbjct: 162 GK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 331 SGQIPSSLSNL-THLSFLDFS---------LNNFSGKMDLDIFLVNHKLLYHLFLSTNRL 380
           S  I   + ++   L  L  S         L N       + F ++ K+L    L+T   
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL----LTTRFK 275

Query: 381 SLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPS 440
            +    ++ TT+H           L      L      E+  L    ++ +     L   
Sbjct: 276 QVTDFLSAATTTHIS---------LDHHSMTL---TPDEVKSLLLKYLDCRPQD--LPRE 321

Query: 441 MQNFGHLNLSHNFLTG--FDQHPNTVNYL--VSNNSLTGEIPSWICNLSNRLESLDLS-- 494
           +       LS   +          T +    V+ + LT  I S +    N LE  +    
Sbjct: 322 VLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIESSL----NVLEPAEYRKM 374

Query: 495 YNNLSGLLP-------QCLGNFSDWL-----------------SILDLQHNKFSGTIPDN 530
           ++ LS + P         L     W                  S+++ Q  + + +IP  
Sbjct: 375 FDRLS-VFPPSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 531 LL--KGNILKVIDLSDNLLQG-RIPRS----------------------LANCSNLE--- 562
            L  K  +     L  +++    IP++                      L N  + E   
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 563 -----FLDLG--DNQIRDIFPSWLGTLPDLNVLI-LKSNKFHGLIREPKTDCGFPKLRII 614
                FLD    + +IR    +W  +   LN L  LK   +   I +   +    +  + 
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK--FYKPYICD---NDPKYERLVN 546

Query: 615 DLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYD 661
            +    F   LP +          + +     ++  +   E   I++
Sbjct: 547 AILD--F---LPKIEENL------ICSKYTDLLRIAL-MAEDEAIFE 581

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 6e-04
 Identities = 63/310 (20%), Positives = 103/310 (33%), Gaps = 77/310 (24%)

Query: 1   MLWPLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKA----ASWKPEEGNNIDCC 56
               L   + +S LL++ +       +E+ T       +P+     A    +     D  
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLT------TNPRRLSIIAESIRDGLATWD-- 345

Query: 57  SWDGVQCNENTGHVIKLDLSS-------------SCLQGSINSSSSLFKLVHLEWLDLAF 103
           +W  V C++ T  +I+  L+              S    S +  + L  L+   W D+  
Sbjct: 346 NWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI---WFDVIK 401

Query: 104 NDFDGSEIPPEIIN-LSSLSYLNLSSAAFSGQIPSEILELS-KLAYLDLSH----NSY-- 155
           +D         ++N L   S +       +  IPS  LEL  KL      H    + Y  
Sbjct: 402 SD------VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 156 ---YDPVELRKPSLGN--------------LADKLTNLKELVLGDVTISSPIPHNLTYL- 197
              +D  +L  P L                  +++T  + + L    +   I H+ T   
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515

Query: 198 ---SSLTTLSLSGCDLR---GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL 251
              S L TL      L+     I  +     RL++  L F      LP     L   K  
Sbjct: 516 ASGSILNTLQ----QLKFYKPYICDNDPKYERLVNAILDF------LPKIEENLICSKYT 565

Query: 252 DLLQNNLSGE 261
           DLL+  L  E
Sbjct: 566 DLLRIALMAE 575

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 17/200 (8%)

Query: 109 SEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168
           + IP  I   +    L+L S   S         L+KL  L L+ N      +L+    G 
Sbjct: 29  TAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN------KLQTLPAGI 80

Query: 169 LADKLTNLKELVLGDVTISSPIPHNL-TYLSSLTTLSLSGCDLRGRIPSSL-GNITRLIH 226
              +L NL+ L + D  + + +P  +   L +L  L L    L+  +P  +  ++T+L +
Sbjct: 81  F-KELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTY 137

Query: 227 LDLSFNKLSDELPT--FIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLG 284
           L L +N+L   LP   F   L SLKEL L  N L      +   L  L+ + L  N+   
Sbjct: 138 LSLGYNELQS-LPKGVFDK-LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

Query: 285 KVPSSLGNLTQLHWLSLASN 304
               +  +L +L  L L  N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 8/183 (4%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSL-GNITRLIHLDLSFN 232
            + K+L L    +SS        L+ L  L L+   L+  +P+ +   +  L  L ++ N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95

Query: 233 KLSDELPTFIGT-LGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVPSSL 290
           KL   LP  +   L +L EL L +N L   LP  +  +L  L  + L  N  L  +P  +
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE-LQSLPKGV 152

Query: 291 -GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDF 349
              LT L  L L +N        +F  L  L+TL +   +       +  +L  L  L  
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 350 SLN 352
             N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 14/168 (8%)

Query: 92  KLVHLEWLDLAFNDFDGSEIPPEIIN-LSSLSYLNLSSAAFSGQIPSEILE-LSKLAYLD 149
           +L  L  L L  N      +P  I   L +L  L ++       +P  + + L  LA L 
Sbjct: 59  RLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 150 LSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNL-TYLSSLTTLSLSGC 208
           L  N      +L+      + D LT L  L LG   + S +P  +   L+SL  L L   
Sbjct: 116 LDRN------QLKSLPPR-VFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNN 167

Query: 209 DLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQN 256
            L+     +   +T L  L L  N+L         +L  LK L L +N
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 23/188 (12%)

Query: 418 LELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG-----FDQHPNTVNYLVSNNS 472
            + LDL SNK++  +P       +     L L+ N L       F +  N     V++N 
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFH-RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 473 LTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDW--LSILDLQHNKFSGTIP-- 528
           L   +P  + +    L  L L  N L  L P     F     L+ L L +N+   ++P  
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPP---RVFDSLTKLTYLSLGYNELQ-SLPKG 151

Query: 529 --DNLLKGNILKVIDLSDNLLQGRIPRSL-ANCSNLEFLDLGDNQIRDIFPSWLGTLPDL 585
             D L     LK + L +N L+ R+P       + L+ L L +NQ++ +      +L  L
Sbjct: 152 VFDKLTS---LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 586 NVLILKSN 593
            +L L+ N
Sbjct: 208 KMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 61/271 (22%), Positives = 93/271 (34%), Gaps = 58/271 (21%)

Query: 470 NNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD 529
           N +L  +    +C+ +N   S+D S   L+ + P      +D    LDLQ NK S ++P 
Sbjct: 1   NEALCKKDGG-VCSCNNNKNSVDCSSKKLTAI-PS--NIPAD-TKKLDLQSNKLS-SLPS 54

Query: 530 NLLKG-NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVL 588
                   L+++ L+DN LQ           NLE L + DN+++ +       L +L  L
Sbjct: 55  KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114

Query: 589 ILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQ 648
            L  N+   L   P+      KL  + L  N     LP   F                  
Sbjct: 115 RLDRNQLKSL--PPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD----------------- 154

Query: 649 EVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSI-SNLKGLQ 707
                          LT                L  + L +N+    +P      L  L+
Sbjct: 155 --------------KLTS---------------LKELRLYNNQL-KRVPEGAFDKLTELK 184

Query: 708 ILSLADNSLHGHIPSCLGNLTDLESLDLSNN 738
            L L +N L         +L  L+ L L  N
Sbjct: 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 26/171 (15%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
           S+  LT  IPS   N+    + LDL  N LS L  +     +  L +L L  NK   T+P
Sbjct: 24  SSKKLT-AIPS---NIPADTKKLDLQSNKLSSLPSKAFHRLTK-LRLLYLNDNKLQ-TLP 77

Query: 529 DNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNV 587
             + K    L+ + ++DN LQ           NL  L L  NQ++ + P    +L  L  
Sbjct: 78  AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137

Query: 588 LILKSNK--------FHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF 630
           L L  N+        F  L            L+ + L  N+   ++P  AF
Sbjct: 138 LSLGYNELQSLPKGVFDKL----------TSLKELRLYNNQLK-RVPEGAF 177

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 19/183 (10%)

Query: 447 LNLSHNFLTG-----FDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGL 501
           L+L  N L+      F +        +++N L   +P+ I      LE+L ++ N L  L
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 502 LPQCLGNFSDWLSILDLQHNKFSGTIP----DNLLKGNILKVIDLSDNLLQGRIPRSL-A 556
                    + L+ L L  N+   ++P    D+L K   L  + L  N LQ  +P+ +  
Sbjct: 101 PIGVFDQLVN-LAELRLDRNQLK-SLPPRVFDSLTK---LTYLSLGYNELQ-SLPKGVFD 154

Query: 557 NCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDL 616
             ++L+ L L +NQ++ +       L +L  L L +N+   +           KL+++ L
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD--SLEKLKMLQL 212

Query: 617 SKN 619
            +N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 27/217 (12%)

Query: 246 GSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASND 305
            +   +D     L+  +P++I   A  +++DL  N+       +   LT+L  L L  N 
Sbjct: 16  NNKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 306 FSGELPAS-FGNLRSLRTLDVYECKFSGQIPSSL-SNLTHLSFLDFSLNNFSGKMDLDIF 363
               LPA  F  L++L TL V + K    +P  +   L +L+ L    N     +   +F
Sbjct: 73  LQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVF 129

Query: 364 --LVNHKLLYHLFLSTNRLSLL-----TKATSNTTSHRFRAVSLCSCDLTEIPKFL-KNQ 415
             L     L +L L  N L  L      K TS         + L +  L  +P+      
Sbjct: 130 DSLTK---LTYLSLGYNELQSLPKGVFDKLTSLKE------LRLYNNQLKRVPEGAFDKL 180

Query: 416 HHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHN 452
             L+ L L +N++  +VP+   D S++    L L  N
Sbjct: 181 TELKTLKLDNNQLK-RVPEGAFD-SLEKLKMLQLQEN 215

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 8/134 (5%)

Query: 198 SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELP--TFIGTLGSLKELDLLQ 255
            ++T + L    ++   P +     +L  +DLS N++S EL    F G L SL  L L  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQG-LRSLNSLVLYG 89

Query: 256 NNLSGELPNSI-GNLASLEQVDLSLNRFLGKVPS-SLGNLTQLHWLSLASNDFSGELPAS 313
           N ++ ELP S+   L SL+ + L+ N+ +  +   +  +L  L+ LSL  N        +
Sbjct: 90  NKIT-ELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 314 FGNLRSLRTLDVYE 327
           F  LR+++T+ + +
Sbjct: 148 FSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 9/152 (5%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
               LT EIP+   NL   +  + L  N +  + P     +   L  +DL +N+ S  + 
Sbjct: 19  RGKGLT-EIPT---NLPETITEIRLEQNTIKVIPPGAFSPYKK-LRRIDLSNNQIS-ELA 72

Query: 529 DNLLKG-NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNV 587
            +  +G   L  + L  N +            +L+ L L  N+I  +       L +LN+
Sbjct: 73  PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132

Query: 588 LILKSNKFHGLIREPKTDCGFPKLRIIDLSKN 619
           L L  NK   + +   T      ++ + L++N
Sbjct: 133 LSLYDNKLQTIAKG--TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 461 PNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSD--WLSILDL 518
                  +  N++   IP    +   +L  +DLS N +S L P     F     L+ L L
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAP---DAFQGLRSLNSLVL 87

Query: 519 QHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPR-SLANCSNLEFLDLGDNQIRDIFP 576
             NK +  +P +L +G   L+++ L+ N +   +   +  +  NL  L L DN+++ I  
Sbjct: 88  YGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

Query: 577 SWLGTLPDLNVLILKSNKFH 596
                L  +  + L  N F 
Sbjct: 146 GTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 4/133 (3%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
             + E+ L   TI    P   +    L  + LS   +    P +   +  L  L L  NK
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 234 LSDELP--TFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLG 291
           +++ LP   F G L SL+ L L  N ++    ++  +L +L  + L  N+       +  
Sbjct: 92  ITE-LPKSLFEG-LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 292 NLTQLHWLSLASN 304
            L  +  + LA N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 538 KVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHG 597
             I L  N ++   P + +    L  +DL +NQI ++ P     L  LN L+L  NK   
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 598 LIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQ 631
           L        G   L+++ L+ N+    L   AFQ
Sbjct: 95  L--PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQ 125

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 18/125 (14%)

Query: 92  KLVHLEWLDLAFNDFDGSEIPPEIIN-LSSLSYLNLSSAAFSGQIPSEILE-LSKLAYLD 149
               L  +DL+ N    SE+ P+    L SL+ L L     + ++P  + E L  L  L 
Sbjct: 54  PYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 150 LSHNSYYDPVELRKPSLGNLA-DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSG- 207
           L+ N      ++    L   A   L NL  L L D  + +      + L ++ T+ L+  
Sbjct: 111 LNAN------KIN--CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

Query: 208 ---CD 209
              CD
Sbjct: 163 PFICD 167

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 22/152 (14%)

Query: 476 EIPSWICNLSNRLESLDLSYNNLS---GLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLL 532
           ++ + +  L    + L LS NN+     L    + N    L IL L  N     I +   
Sbjct: 39  KMDATLSTLKA-CKHLALSTNNIEKISSL--SGMEN----LRILSLGRNLIK-KIENLDA 90

Query: 533 KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP-SWLGTLPDLNVLILK 591
             + L+ + +S N +   +   +    NL  L + +N+I +      L  L  L  L+L 
Sbjct: 91  VADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

Query: 592 SNKFHGLIREPKTDCG--------FPKLRIID 615
            N  +   +E               P L+ +D
Sbjct: 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 21/171 (12%)

Query: 192 HNLTYLSSLTTLSLSGCDLR-GRIPSSLGNITRLIHLDLSFNKLSD-ELPTFIGTLGSLK 249
                 +    + L G      ++ ++L  +    HL LS N +        +  + +L+
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLR 73

Query: 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS-- 307
            L L +N +  ++ N      +LE++ +S N+      S +  L  L  L +++N  +  
Sbjct: 74  ILSLGRNLIK-KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNW 130

Query: 308 GELPASFGNLRSLRTLDVYECKFSGQIPSS----------LSNLTHLSFLD 348
           GE+      L  L  L +           +          +  L +L  LD
Sbjct: 131 GEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 516 LDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF 575
           L          +   L      K + LS N ++ +I  SL+   NL  L LG N I+ I 
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKKI- 85

Query: 576 PSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNR 620
            +       L  L +  N+    I           LR++ +S N+
Sbjct: 86  ENLDAVADTLEELWISYNQ----IASLSGIEKLVNLRVLYMSNNK 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 23/172 (13%)

Query: 92  KLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLS 151
                E ++L        ++   +  L +  +L LS+     +I S +  +  L  L L 
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLG 78

Query: 152 HNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR 211
            N       ++K  + NL      L+EL +    I+S     +  L +L  L +S   + 
Sbjct: 79  RN------LIKK--IENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKIT 128

Query: 212 G-RIPSSLGNITRLIHLDLSFNKLSDEL----------PTFIGTLGSLKELD 252
                  L  + +L  L L+ N L ++              +  L +LK+LD
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 530 NLLKGNILKVIDLSDNLLQ-GRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVL 588
             +     + ++L   +    ++  +L+     + L L  N I  I  S L  + +L +L
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRIL 75

Query: 589 ILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
            L  N    +      D     L  + +S N+  
Sbjct: 76  SLGRNLIKKI---ENLDAVADTLEELWISYNQIA 106

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 47/239 (19%), Positives = 97/239 (40%), Gaps = 21/239 (8%)

Query: 52  NIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSS-SSLFKLVHLEWLDLAFNDFDGSE 110
            +D    + +  +     + +  ++  C +  ++   +  F    ++ +DL+ +  + S 
Sbjct: 51  TLDLTGKN-LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 109

Query: 111 IPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLA 170
           +   +   S L  L+L     S  I + + + S L  L+LS  S        + +L  L 
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-----GFSEFALQTLL 164

Query: 171 DKLTNLKELVLG------DVTISSPIPHNLTYLSSLTTLSLSGC--DLRGRIPSSLG-NI 221
              + L EL L       +  +   + H      ++T L+LSG   +L+    S+L    
Sbjct: 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHV---SETITQLNLSGYRKNLQKSDLSTLVRRC 221

Query: 222 TRLIHLDLSF-NKLSDELPTFIGTLGSLKELDLLQ-NNLSGELPNSIGNLASLEQVDLS 278
             L+HLDLS    L ++       L  L+ L L +  ++  E    +G + +L+ + + 
Sbjct: 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 59/282 (20%), Positives = 110/282 (39%), Gaps = 17/282 (6%)

Query: 75  LSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQ 134
           L    L          ++L   E L    +    +  P     L S   +          
Sbjct: 24  LCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMD 83

Query: 135 IP-SEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHN 193
            P +E     ++ ++DLS++           +L  +  + + L+ L L  + +S PI + 
Sbjct: 84  QPLAEHFSPFRVQHMDLSNSVIEVS------TLHGILSQCSKLQNLSLEGLRLSDPIVNT 137

Query: 194 LTYLSSLTTLSLSGCDL--RGRIPSSLGNITRLIHLDLSF-NKLSDE-LPTFIGTLG-SL 248
           L   S+L  L+LSGC       + + L + +RL  L+LS+    +++ +   +  +  ++
Sbjct: 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197

Query: 249 KELDL--LQNNLSGELPNSIG-NLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLAS- 303
            +L+L   + NL     +++     +L  +DLS +  L          L  L  LSL+  
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257

Query: 304 NDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLS 345
            D   E     G + +L+TL V+     G +      L HL 
Sbjct: 258 YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
           SN  L  +IP    ++      L L+ N  + L    +      L  ++  +NK +  I 
Sbjct: 19  SNQKLN-KIPE---HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIE 73

Query: 529 DNLLKG-NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNV 587
           +   +G + +  I L+ N L+    +      +L+ L L  N+I  +       L  + +
Sbjct: 74  EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133

Query: 588 LILKSNKFHGL 598
           L L  N+   +
Sbjct: 134 LSLYDNQITTV 144

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 198 SSLTTLSLSGCDLRGRIPSSL-GNITRLIHLDLSFNKLSDELP--TFIGTLGSLKELDLL 254
                L L+  +      + +   + +L  ++ S NK++ ++    F G    + E+ L 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEG-ASGVNEILLT 89

Query: 255 QNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVPS-SLGNLTQLHWLSLASNDFSGELPA 312
            N L   + + +   L SL+ + L  NR +  V + S   L+ +  LSL  N  +   P 
Sbjct: 90  SNRLE-NVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 313 SFGNLRSLRTLDVY 326
           +F  L SL TL++ 
Sbjct: 148 AFDTLHSLSTLNLL 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 8/124 (6%)

Query: 227 LDLSFNKLSDELPTFI-GTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGK 285
           L L+ N+ +    T I   L  L++++   N ++     +    + + ++ L+ NR L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LEN 95

Query: 286 VPSSL-GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP----SSLSN 340
           V   +   L  L  L L SN  +     SF  L S+R L +Y+ + +  +      +L +
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHS 154

Query: 341 LTHL 344
           L+ L
Sbjct: 155 LSTL 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 461 PNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSD--WLSILDL 518
             T    ++NN  T    + I     +L  ++ S N ++ +     G F     ++ + L
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE---GAFEGASGVNEILL 88

Query: 519 QHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPS 577
             N+    +   + KG   LK + L  N +      S    S++  L L DNQI  + P 
Sbjct: 89  TSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 578 WLGTLPDLNVLILKSN 593
              TL  L+ L L +N
Sbjct: 148 AFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 174 TNLKELVLGDVTISS-PIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN 232
               EL L +   +          L  L  ++ S   +      +    + +  + L+ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 233 KLSDELP--TFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVPSS 289
           +L + +    F G L SLK L L  N ++  + N     L+S+  + L  N+     P +
Sbjct: 92  RLEN-VQHKMFKG-LESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148

Query: 290 LGNLTQLHWLSLASN 304
              L  L  L+L +N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 28/140 (20%), Positives = 60/140 (42%), Gaps = 17/140 (12%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIIN-LSSLSYLNLSSAA 130
           +L L+++     + ++    KL  L  ++ + N    ++I        S ++ + L+S  
Sbjct: 36  ELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLTSNR 92

Query: 131 FSGQIPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGNLA-DKLTNLKELVLGDVTISS 188
               +  ++ + L  L  L L  N       +    +GN +   L++++ L L D  I++
Sbjct: 93  LEN-VQHKMFKGLESLKTLMLRSN------RIT--CVGNDSFIGLSSVRLLSLYDNQITT 143

Query: 189 PIPHN-LTYLSSLTTLSLSG 207
            +       L SL+TL+L  
Sbjct: 144 -VAPGAFDTLHSLSTLNLLA 162

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 51/305 (16%), Positives = 87/305 (28%), Gaps = 53/305 (17%)

Query: 197 LSSLTTLSLSGCDLRGRIPSSLG-----NITRLIHLDLSFNKLSDE-LPTFIGTLGSLKE 250
           LSSL  L+L+G  +     + +          L  ++L+  +L    L T +      ++
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 251 LDLLQNNLSGELPNSIG-----NLASLEQVDLSLNRF-------LGKVPSSLGNLTQLHW 298
           L L  N+L  E    +      +   +  + LS N         L +    L   T +  
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG---LAGNTSVTH 187

Query: 299 LSLASNDFSGE----LPASFGNLRSLRTLDVYECKFSGQ----IPSSLSNLTHLSFLDFS 350
           LSL       E    L A     R L+ L+V            +  +      L  L   
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247

Query: 351 LNNFSGK-----MDLDIFLVNHKLLYHLFLSTNRLS---------LLTKATSNTTSHRFR 396
            N  S +      DL         +         +S         +     S   +   R
Sbjct: 248 FNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQR 307

Query: 397 AVSLCSCDLTE----------IPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGH 446
            + L   DL +            + L+ +  +  L             W      +  GH
Sbjct: 308 HLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGH 367

Query: 447 LNLSH 451
            +  H
Sbjct: 368 HHHHH 372

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 50/299 (16%), Positives = 84/299 (28%), Gaps = 54/299 (18%)

Query: 118 LSSLSYLNLSSAAFS---GQIPSEILELSK--LAYLDLSHNSYYDPVELRKPSLGNLADK 172
           LSSL  LNL+    +     + + +L   +  L  ++L+         L    L  L   
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ------LDPAGLRTLLPV 124

Query: 173 LTNLKELVLGD--------VTISSPIPHNLTYLSSLTTLSLSGCDLRGR----IPSSLGN 220
               ++L L            +   + H+      +TTL LS   L       +   L  
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQ---CQITTLRLSNNPLTAAGVAVLMEGLAG 181

Query: 221 ITRLIHLDLSFNKLSDE----LPTFIGTLGSLKELDLLQNNLSGE----LPNSIGNLASL 272
            T + HL L    L DE    L   +     L+EL++  N         L  +     SL
Sbjct: 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSL 241

Query: 273 EQVDLSLNRF-------LGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN-LRSLRTLD 324
           E + L  N         L  +  +     ++          S           R+L + D
Sbjct: 242 ELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWD 301

Query: 325 VYECKFSGQIPSSLSNLTHLSFLDFSLNNFS--GKMDLDIFLVNHKLLYHLFLSTNRLS 381
                      + +     L   D   +  +          L     +  L        
Sbjct: 302 ----------RARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 34/219 (15%)

Query: 370 LYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLK-NQHHLELLDLASNKI 428
                          +  S+        V +     T +   L   +H L+ ++LAS ++
Sbjct: 54  HLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL 113

Query: 429 NGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTV-NYLVSNNSLTGEIPSWICNLSNR 487
           +    + LL P       L L  N L    +    + + L+ +                +
Sbjct: 114 DPAGLRTLL-PVFLRARKLGLQLNSLG--PEACKDLRDLLLHDQC--------------Q 156

Query: 488 LESLDLSYNNLSG----LLPQCL-GNFSDWLSILDLQHNKFSGT----IPDNLLKGNILK 538
           + +L LS N L+     +L + L GN S  ++ L L H          +   L +   L+
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTS--VTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214

Query: 539 VIDLSDNLLQGR----IPRSLANCSNLEFLDLGDNQIRD 573
            ++++ N         + R+     +LE L L  N++  
Sbjct: 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.3 bits (133), Expect = 6e-08
 Identities = 73/502 (14%), Positives = 157/502 (31%), Gaps = 81/502 (16%)

Query: 164 PSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNI-- 221
            +   L+ +  NL+ L              L         +L   +  G +   +  I  
Sbjct: 63  ATPDRLSRRFPNLRSL-------------KLKGKPRAAMFNLIPENWGGYVTPWVTEISN 109

Query: 222 --TRLIHLDLSFNKLSDELPTFI--GTLGSLKELDLLQ-NNLSGELPNSIG-NLASLEQV 275
              +L  +      +SD     +       L+ L L + +  + +   SI  +   ++ +
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169

Query: 276 DLSLNRFLGKVPSSLG----NLTQLHWLSLASNDFSG----ELPASFGNLRSLRTLDVYE 327
            +  + F  K    L     + T L  L+    +F+     +L     N RSL ++ V +
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229

Query: 328 CKFSGQ--IPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTK 385
            +         + +NL        + +   G  +  + LV  + L  L LS    + +  
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNED--IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287

Query: 386 ATSNTTSHRFRAVSLCSCDLT--EIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQN 443
                 + + R + L    L   +    ++   +LE+L+  +          + D  ++ 
Sbjct: 288 LFPF--AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV---------IGDRGLEV 336

Query: 444 FG-------HLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYN 496
                     L +         +       LVS   L       +      LE + +  +
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEG---LVSQRGLIA-----LAQGCQELEYMAVYVS 388

Query: 497 NLS--GL--LPQCLGNFSDWLSILDLQH-NKFSGTIPDNLLKGNI-----LKVIDLSDN- 545
           +++   L  +   L N  D   ++ L    + +    DN ++  +     L+        
Sbjct: 389 DITNESLESIGTYLKNLCD-FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447

Query: 546 -LLQGRIPRSLA-NCSNLEFLDLGDNQIRDI-FPSWLGTLPDLNVLILKSNKF--HGLIR 600
             L       +     N+ ++ LG     D     +    P+L  L ++   F    +  
Sbjct: 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507

Query: 601 EPKTDCGFPKLRIIDLSKNRFT 622
                   P LR + +   R +
Sbjct: 508 AVT---KLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 62/467 (13%), Positives = 131/467 (28%), Gaps = 75/467 (16%)

Query: 140 LELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNL--TYL 197
           L+L       + +    +      P +  +++ L  LK +    + +S      L     
Sbjct: 78  LKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137

Query: 198 SSLTTLSLSGCDLRGRIPSSLGNITR----LIHLDLSFNKLSDELPTFIGTLG----SLK 249
             L TL L  C   G     L +I      +  L +  +  S++   ++  L     SL+
Sbjct: 138 DDLETLKLDKCS--GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195

Query: 250 ELDLLQNNLSGELPNSIGNLA----SLEQVDLSLNRF--LGKVPSSLGNLTQLHWLSLAS 303
            L+      +   P  +  +A    SL  V +       L     +  NL +    SL  
Sbjct: 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE 255

Query: 304 NDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
           +    E   +    R L  L +     +  +P        +  LD        + D    
Sbjct: 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETE-DHCTL 313

Query: 364 LVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTE-------------IPK 410
           +     L  L    N +             + + + +      +             +  
Sbjct: 314 IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372

Query: 411 FLKNQHHLELLDLASNKINGKVPKWLLD--PSMQNFGHLNLSHNFLTGFDQHPNTVNYLV 468
             +    LE + +  + I  +  + +     ++ +F  + L                  +
Sbjct: 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE-------------ERI 419

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYN--NLSGLLPQCLGNFSDWLSILDLQHNKFSGT 526
           ++  L   + S +      L           L+ L    +G +S  +  + L +   S  
Sbjct: 420 TDLPLDNGVRSLLIGCKK-LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478

Query: 527 IPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573
                 +G                       C NL+ L++      +
Sbjct: 479 GLMEFSRG-----------------------CPNLQKLEMRGCCFSE 502

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.6 bits (126), Expect = 4e-07
 Identities = 47/295 (15%), Positives = 96/295 (32%), Gaps = 38/295 (12%)

Query: 74  DLSSSCLQGSINSSSSLFKLVHLEWL-DLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFS 132
           +     L   I        LV    L  L  +    +E+P      + +  L+L  A   
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 133 GQIPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP 191
            +    +++    L  L+  +        +    L  LA     LK L +        + 
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNV-------IGDRGLEVLAQYCKQLKRLRIERGADEQGME 359

Query: 192 HNLTYLSSLTTLSLS-GCDLRGRIPSSLGNITRLIHLDLSFNKLSDE-LPTFIGTLGSLK 249
                +S    ++L+ GC               L ++ +  + +++E L +    L +L 
Sbjct: 360 DEEGLVSQRGLIALAQGC-------------QELEYMAVYVSDITNESLESIGTYLKNLC 406

Query: 250 ELDLLQNNLSGELPNSIG---------NLASLEQVDLSLNRFL--GKVPSSLG-NLTQLH 297
           +  L+  +    + +                L +    L +        S +G     + 
Sbjct: 407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466

Query: 298 WLSLASNDFSGE-LPASFGNLRSLRTLDVYECKFSGQ-IPSSLSNLTHLSFLDFS 350
           W+ L     S E L        +L+ L++  C FS + I ++++ L  L +L   
Sbjct: 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 7e-06
 Identities = 38/281 (13%), Positives = 81/281 (28%), Gaps = 23/281 (8%)

Query: 72  KLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF 131
           KL        G             +  LDL +   +  +    I    +L  L   +   
Sbjct: 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG 330

Query: 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKP-----SLGNLADKLTNLKELVLGDVTI 186
              +        +L  L +   +    +E  +       L  LA     L+ + +    I
Sbjct: 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390

Query: 187 S----SPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLG------NITRLIHLDLSFN--KL 234
           +      I   L  L     + L   +    +P   G         +L           L
Sbjct: 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450

Query: 235 SDELPTFIGTLG-SLKELDLLQNNLSGE-LPNSIGNLASLEQVDLSLNRFLGK-VPSSLG 291
           +D   ++IG    +++ + L     S E L        +L+++++    F  + + +++ 
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510

Query: 292 NLTQLHWLSLASNDFSGELPASFG---NLRSLRTLDVYECK 329
            L  L +L +     S              ++  +      
Sbjct: 511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVP 551

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 172 KLTNLKELVLGDVTISSP-IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLS 230
             +++KELVL +   +   +         L  LS     L   I ++L  + +L  L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 231 FNKLSDELPTFIGTLGSLKELDLLQNNLS--GELPNSIGNLASLEQVDLSLN 280
            N++S  L        +L  L+L  N +     +   +  L +L+ +DL   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
           +LD   +   G +     +   L+ +   +  L   I  +L   + L+ L+L DN++   
Sbjct: 23  VLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRVSGG 79

Query: 575 FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKN 619
                   P+L  L L  NK   L    +       L+ +DL   
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDL-STIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 486 NRLESLDLSYN-NLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSD 544
           + ++ L L  + +  G L      F + L  L   +   + +I  NL K N LK ++LSD
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEE-LEFLSTINVGLT-SI-ANLPKLNKLKKLELSD 73

Query: 545 NLLQGRIPRSLANCSNLEFLDLGDNQIRDI-FPSWLGTLPDLNVLILKSN 593
           N + G +      C NL  L+L  N+I+D+     L  L +L  L L + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 14/139 (10%)

Query: 458 DQHPNTVN--YLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSD--WL 513
           ++ P+ V    L ++ S  G++          LE L      L+      + N      L
Sbjct: 13  NRTPSDVKELVLDNSRSNEGKLEGLTDEFEE-LEFLSTINVGLT-----SIANLPKLNKL 66

Query: 514 SILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQG-RIPRSLANCSNLEFLDLGDNQIR 572
             L+L  N+ SG +     K   L  ++LS N ++       L    NL+ LDL + ++ 
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

Query: 573 DIF---PSWLGTLPDLNVL 588
           ++     +    LP L  L
Sbjct: 127 NLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 537 LKVIDLSDN-LLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKF 595
           +K + L ++   +G++         LEFL   +  +  I  + L  L  L  L L  N+ 
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRV 76

Query: 596 HGLIREPKTDCGFPKLRIIDLSKNRFT 622
            G +      C  P L  ++LS N+  
Sbjct: 77  SGGLEVLAEKC--PNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 676 KKIPDILTAVILSSNRFD-GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLD 734
            + P  +  ++L ++R + G++       + L+ LS  +  L   I + L  L  L+ L+
Sbjct: 13  NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLE 70

Query: 735 LSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
           LS+NR SG +     +   L   N+S N   
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 21/112 (18%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 268 NLASLEQVDLSLNRF-LGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
             + ++++ L  +R   GK+        +L +LS  +   +  + A+   L  L+ L++ 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 327 ECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTN 378
           + + SG +        +L+ L+ S N       ++  L   + L  L L   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE-PLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 15/140 (10%)

Query: 117 NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176
           ++  L   N  S    G++     E  +L +L   +        L    + NL  KL  L
Sbjct: 18  DVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINV------GLTS--IANL-PKLNKL 66

Query: 177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG-RIPSSLGNITRLIHLDLSFNKLS 235
           K+L L D  +S  +        +LT L+LSG  ++       L  +  L  LDL   +++
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

Query: 236 DE---LPTFIGTLGSLKELD 252
           +           L  L  LD
Sbjct: 127 NLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 700 ISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSG-QIPQQLVELTFLEFFN 758
           +  L  L+ L L+DN + G +        +L  L+LS N+       + L +L  L+  +
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119

Query: 759 VSDN 762
           + + 
Sbjct: 120 LFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 173 LTNLKELVLGDVTISSP-IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSF 231
              ++ELVL +   +   I        +L  LSL    L   + S+L  + +L  L+LS 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSE 80

Query: 232 NKLSDELPTFIGTLGSLKELDLLQNNLS--GELPNSIGNLASLEQVDLSLN 280
           N++   L      L +L  L+L  N L     L   +  L  L+ +DL   
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDN 545
             +  L L     +    + L      L  L L +         NL K   LK ++LS+N
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN 81

Query: 546 LLQGRIPRSLANCSNLEFLDLGDNQIRDIFP-SWLGTLPDLNVLILKSN 593
            + G +        NL  L+L  N+++DI     L  L  L  L L + 
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
           +LD   +   G I     +   L+ + L +  L   +  +L     L+ L+L +N+I   
Sbjct: 30  VLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGG 86

Query: 575 FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKN 619
                  LP+L  L L  NK   +    +       L+ +DL   
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 663 SLTMSNKGQMMSYKKIPDILTAVILSSNRFD-GEIPTSISNLKGLQILSLADNSLHGHIP 721
            + M  +  +    + P  +  ++L + + + G+I    +    L+ LSL +  L   + 
Sbjct: 7   GMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV- 64

Query: 722 SCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
           S L  L  L+ L+LS NR  G +     +L  L   N+S N   
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 268 NLASLEQVDLSLNRF-LGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
             A++ ++ L   +   GK+         L +LSL +      + ++   L  L+ L++ 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 327 ECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTN 378
           E +  G +      L +L+ L+ S N       L+  L   + L  L L   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 549 GRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGF 608
           G+I    A   NLEFL L +  +  +  S L  LP L  L L  N+  G           
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG--LDMLAEKL 94

Query: 609 PKLRIIDLSKNRFT 622
           P L  ++LS N+  
Sbjct: 95  PNLTHLNLSGNKLK 108

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 24/137 (17%), Positives = 35/137 (25%), Gaps = 23/137 (16%)

Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPA-SFGNLRSLRTLDVYECKFSGQIPSS 337
                      L     L  L + +      L       L  LR L + +       P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRA 397
                 LS L+ S N     +           L  L LS N L                 
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTV--QGLSLQELVLSGNPLH---------------- 116

Query: 398 VSLCSCDLTEIPKFLKN 414
              CSC L  + ++ + 
Sbjct: 117 ---CSCALRWLQRWEEE 130

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 8e-07
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPS-SLGNITRLIHLDLSFNKLSD-ELPTFIGTLGS 247
             H+L    +LT L +        +    L  +  L +L +  + L       F      
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF-TPR 81

Query: 248 LKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRF 282
           L  L+L  N L      ++  L SL+++ LS N  
Sbjct: 82  LSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 513 LSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQI 571
           L+ L +++ +    +    L+G   L+ + +  + L+   P +      L  L+L  N +
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 572 RDIFPSWLGTLPDLNVLILKSNKFH 596
             +    +  L  L  L+L  N  H
Sbjct: 93  ESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 5e-06
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 3/102 (2%)

Query: 227 LDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPN-SIGNLASLEQVDLSLNRFLGK 285
           L  + +   D L    G   +L EL +        L    +  L  L  + +  +     
Sbjct: 13  LRCTRDGALDSLHHLPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 286 VPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYE 327
            P +     +L  L+L+ N        +   L SL+ L +  
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 256 NNLSGELPNSIGNLASLEQVDLSLNRFLGKVPS-SLGNLTQLHWLSLASNDFSGELPASF 314
            + + +  + +    +L ++ +   + L  +    L  L +L  L++  +      P +F
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 315 GNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNF 354
                L  L++           ++  L+ L  L  S N  
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 173 LTNLKELVLGDVTISSPIPHN-LTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSF 231
             NL EL + +      +    L  L  L  L++    LR   P +     RL  L+LSF
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 232 NKLSDELPTFIGTLGSLKELDLLQNNL 258
           N L   L        SL+EL L  N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 34/136 (25%)

Query: 399 SLCSC-----------DLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHL 447
             C                +    L    +L  L + + +    +    L   +    +L
Sbjct: 3   DACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR-GLGELRNL 61

Query: 448 NLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLG 507
            +  + L      P+  ++                    RL  L+LS+N L  L  + + 
Sbjct: 62  TIVKSGLRFV--APDAFHFT------------------PRLSRLNLSFNALESLSWKTVQ 101

Query: 508 NFSDWLSILDLQHNKF 523
             S  L  L L  N  
Sbjct: 102 GLS--LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 682 LTAVILSSNRFDGEIPT-SISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRF 740
           LT + + + +    +    +  L  L+ L++  + L    P        L  L+LS N  
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 741 SGQIPQQLVELTFLEFFNVSDNHFT 765
              +  + V+   L+   +S N   
Sbjct: 93  E-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 4/104 (3%)

Query: 520 HNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPR-SLANCSNLEFLDLGDNQIRDIFPSW 578
               +     +L     L  + + +      +    L     L  L +  + +R + P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 579 LGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
               P L+ L L  N    L  +         L+ + LS N   
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQG---LSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 11/107 (10%)

Query: 689 SNRFDGEIPTSISNLKGLQILSLADNSLHGHIPS-CLGNLTDLESLDLSNNRFSGQIPQQ 747
           +     +    +   + L  L + +     H+    L  L +L +L +  +      P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 748 LVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTS-----FDGNSGLC 789
                 L   N+S N     +       T    S       GN   C
Sbjct: 76  FHFTPRLSRLNLSFNALES-LSWK----TVQGLSLQELVLSGNPLHC 117

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 513 LSILDLQHNKFSGTIPDNLLKGNI-LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQI 571
              LDL+  K    + +NL         ID SDN ++ ++         L+ L + +N+I
Sbjct: 21  DRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRI 76

Query: 572 RDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
             I       LPDL  LIL +N    L  +         L  + + +N  T
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 137 SEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTY 196
           ++     +   LDL           + P + NL   L     +   D  I   +      
Sbjct: 13  AQYTNAVRDRELDLRGY--------KIPVIENLGATLDQFDAIDFSDNEIRK-LD-GFPL 62

Query: 197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD--ELPTFIGTLGSLKELDLL 254
           L  L TL ++   +          +  L  L L+ N L +  +L   + +L SL  L +L
Sbjct: 63  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCIL 121

Query: 255 QN 256
           +N
Sbjct: 122 RN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLS 230
                 +EL L    I   I +    L     +  S  ++R ++      + RL  L ++
Sbjct: 16  TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVN 72

Query: 231 FNKLSDELPTFIGTLGSLKELDLLQNNLS--GELPNSIGNLASLEQVDLSLN 280
            N++          L  L EL L  N+L   G+L + + +L SL  + +  N
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 17/136 (12%)

Query: 447 LNLSHNFLTGFDQHPNTVN----YLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLL 502
           + L+   +    Q+ N V      L     +   I +    L    +++D S N +    
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDL-RGYKIP-VIENLGATLDQ-FDAIDFSDNEIR--- 55

Query: 503 PQCLGNFSD--WLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLLQG-RIPRSLANC 558
              L  F     L  L + +N+    I + L +    L  + L++N L        LA+ 
Sbjct: 56  --KLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 112

Query: 559 SNLEFLDLGDNQIRDI 574
            +L +L +  N + + 
Sbjct: 113 KSLTYLCILRNPVTNK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 26/141 (18%)

Query: 382 LLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSM 441
           L+ +A   T + R R + L    +  I          + +D + N+I  K+  +   P +
Sbjct: 8   LIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGF---PLL 63

Query: 442 QNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGL 501
           +    L +++N +                      I   +      L  L L+ N+L  L
Sbjct: 64  RRLKTLLVNNNRIC--------------------RIGEGLDQALPDLTELILTNNSLVEL 103

Query: 502 LP-QCLGNFSDWLSILDLQHN 521
                L +    L+ L +  N
Sbjct: 104 GDLDPLASLKS-LTYLCILRN 123

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.5 bits (122), Expect = 8e-07
 Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 17/172 (9%)

Query: 77  SSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIP 136
           S   Q  +  S  L  +  L  L +       + +        +L  L + S      + 
Sbjct: 157 SWIEQVDL--SPVLDAMPLLNNLKI----KGTNNLSIGKKPRPNLKSLEIISGGLPDSVV 210

Query: 137 SEIL--ELSKLAYLDLSHNSYYDPVELRKPSLGNL--ADKLTNLKELVLGDVTISSPIPH 192
            +IL  +L  L  L L         +        L   D+  NLK L + D    + +  
Sbjct: 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270

Query: 193 NL---TYLSSLTTLSLSGCDLRGR----IPSSLGNITRLIHLDLSFNKLSDE 237
                  L  L T+ +S   L       +   +  I  L  +++ +N LSDE
Sbjct: 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 3e-06
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 28/218 (12%)

Query: 156 YDPVELRKPSLGNLADKLTNLKELVLGDVTIS----SPIPHN--LTYLSSLTTLSLSGCD 209
            +        +    +K  + + L  GD+       S I        L ++  L+     
Sbjct: 121 GEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK 180

Query: 210 LRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGT--LGSLKELDLLQNNLSGELPNSIG 267
               +         L  L++    L D +   I    L +L++L L            + 
Sbjct: 181 GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240

Query: 268 NLA---------SLEQVDLSLNRFLGKVPSSLGN---LTQLHWLSLASNDFSGE----LP 311
                       +L+ + +        V         L QL  + +++   + E    L 
Sbjct: 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300

Query: 312 ASFGNLRSLRTLDVYECKFSG----QIPSSLSNLTHLS 345
                ++ L+ +++     S     ++  SL     +S
Sbjct: 301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 3e-05
 Identities = 28/188 (14%), Positives = 59/188 (31%), Gaps = 19/188 (10%)

Query: 393 HRFRAVSLCSCDLTEIPKFLKNQH-HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSH 451
                ++      T      K    +L+ L++ S  +   V + +L   + N   L L  
Sbjct: 169 DAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228

Query: 452 NFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSD 511
                       V     +  +    P +  +    L+ L +       ++ +       
Sbjct: 229 G-----------VEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 512 W--LSILDLQHNKFSGTIPDNLLKGNI----LKVIDLSDNLLQGRIPRSLANCSNLEFLD 565
              L  +D+     +      LL        LK I++  N L   + + L     ++ +D
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMK-ID 336

Query: 566 LGDNQIRD 573
           + D+Q  D
Sbjct: 337 VSDSQEYD 344

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 8e-05
 Identities = 27/208 (12%), Positives = 73/208 (35%), Gaps = 15/208 (7%)

Query: 550 RIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFP 609
            I  +    ++ E L  GD    +   SW+    DL+ ++      + L  +   +    
Sbjct: 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWI-EQVDLSPVLDAMPLLNNLKIKGTNNLSIG 188

Query: 610 KLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNK 669
           K    +L                 + ++ +  S+L  +++++    G   Y +   M+  
Sbjct: 189 KKPRPNLKSLEI-----ISGGLPDSVVEDILGSDLPNLEKLV-LYVGVEDYGFDGDMNVF 242

Query: 670 GQMMSYKKIPDILTAVILSSNRFDGEIPTSISN---LKGLQILSLADNSLHG----HIPS 722
             + S  + P+ L  + +        +         L  L+ + ++   L       +  
Sbjct: 243 RPLFSKDRFPN-LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301

Query: 723 CLGNLTDLESLDLSNNRFSGQIPQQLVE 750
            +  +  L+ +++  N  S ++ ++L +
Sbjct: 302 HVDKIKHLKFINMKYNYLSDEMKKELQK 329

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 6/156 (3%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
            + ++L L    +++        L+ LT L+L    L+        ++T L  L L+ N+
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 234 LSDELPTFI-GTLGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVPSSL- 290
           L+  LP  +   L  L +L L  N L   LP+ +   L  L+++ L+ N+ L  +P+   
Sbjct: 95  LA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAF 151

Query: 291 GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
             LT L  LSL++N        +F  L  L+T+ ++
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 25/178 (14%)

Query: 109 SEIPP--EIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSL 166
           S IP   E ++L S     LS A F G        L+KL +L+L +N       L+  S 
Sbjct: 31  SGIPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQ------LQTLSA 76

Query: 167 GNLADKLTNLKELVLGDVTISSPIPHNL-TYLSSLTTLSLSGCDLRGRIPSSL-GNITRL 224
           G + D LT L  L L +  ++S +P  +  +L+ L  L L G  L+  +PS +   +T+L
Sbjct: 77  G-VFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKL 133

Query: 225 IHLDLSFNKLSDELPT--FIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN 280
             L L+ N+L   +P   F   L +L+ L L  N L      +   L  L+ + L  N
Sbjct: 134 KELRLNTNQLQ-SIPAGAF-DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)

Query: 113 PEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADK 172
                L+S+  +  +++    +    I  L  + YL L  N        +   +  L  +
Sbjct: 35  VTQNELNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGN--------KLHDISAL-KE 83

Query: 173 LTNLKELVLGD---VTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDL 229
           LTNL  L+L      ++ + +   LT   +L  L L    L+         +T L +L+L
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLT---NLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140

Query: 230 SFNKLSDELPTFI-GTLGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVP 287
           + N+L   LP  +   L +L ELDL  N L   LP  +   L  L+ + L  N+ L  VP
Sbjct: 141 AHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ-LKSVP 197

Query: 288 S----SLGNLTQLHWL 299
                 L +L  + WL
Sbjct: 198 DGVFDRLTSLQYI-WL 212

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 10/160 (6%)

Query: 171 DKLTNLKELVLGDVTISS-PIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDL 229
             L N++ L LG   +        LT   +LT L L+G  L+         +T L  L L
Sbjct: 60  QYLPNVRYLALGGNKLHDISALKELT---NLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116

Query: 230 SFNKLSDELPTFI-GTLGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVP 287
             N+L   LP  +   L +L  L+L  N L   LP  +   L +L ++DLS N+ L  +P
Sbjct: 117 VENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQ-LQSLP 173

Query: 288 SSL-GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
             +   LTQL  L L  N         F  L SL+ + ++
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 201 TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFI-GTLGSLKELDLLQNNLS 259
             L L    +    P    ++  L  L L  N+L   LP  +  +L  L  LDL  N L+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 260 GELPNSI-GNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLR 318
             LP+++   L  L+++ +  N+ L ++P  +  LT L  L+L  N        +F  L 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

Query: 319 SLRTLDVY 326
           SL    ++
Sbjct: 160 SLTHAYLF 167

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 9/131 (6%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
           TN + L L D  I+   P     L +L  L L    L         ++T+L  LDL  N+
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 234 LSDELPTFI-GTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPS---- 288
           L+  LP+ +   L  LKEL +  N L+ ELP  I  L  L  + L  N+ L  +P     
Sbjct: 100 LT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFD 156

Query: 289 SLGNLTQLHWL 299
            L +LT   +L
Sbjct: 157 RLSSLTHA-YL 166

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 227 LDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGK 285
           L L  N+ +  +P  +     L  +DL  N +S  L N    N+  L  + LS NR L  
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR-LRC 92

Query: 286 VPSSL-GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
           +P      L  L  LSL  ND S     +F +L +L  L + 
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 227 LDLSFNKLSDELPTFI-GTLGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLG 284
           L L+ N+L       + G L  L +L+L +N L+  +  +     + ++++ L  N+ + 
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENK-IK 91

Query: 285 KVPSSL-GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
           ++ + +   L QL  L+L  N  S  +P SF +L SL +L++ 
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	930
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.5
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.27
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.9
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.51
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.65
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.62
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.52

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.4e-91  Score=862.40  Aligned_cols=711  Identities=33%  Similarity=0.493  Sum_probs=598.2

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCCccc
Q 047985            4 PLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGS   83 (930)
Q Consensus         4 ~~c~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~   83 (930)
                      ..+.++||+|||+||+++.++.               ++++|+.    ++|||+|+||+|+  +|+|++|||+++.+.|.
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~---------------~l~~W~~----~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~   65 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKN---------------LLPDWSS----NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVG   65 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTT---------------SSTTCCT----TSCGGGSTTEEEE--TTEEEEEECTTSCCCEE
T ss_pred             ccCCHHHHHHHHHHHhhCCCcc---------------cccCCCC----CCCCcCCcceEEC--CCcEEEEECCCCCcCCc
Confidence            3457889999999999998542               5899986    6799999999998  58999999999999998


Q ss_pred             ---ccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCc--cccCCCCCcEEEccCCCCCCC
Q 047985           84 ---INSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPS--EILELSKLAYLDLSHNSYYDP  158 (930)
Q Consensus        84 ---~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~~~~  158 (930)
                         +++  ++..+++|+.++++.+.+..  +|+.++.+++|++|||++|.++|.+|.  .++++++|++|++++|.+.  
T Consensus        66 ~~~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~--  139 (768)
T 3rgz_A           66 FSAVSS--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--  139 (768)
T ss_dssp             HHHHHH--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE--
T ss_pred             cCccCh--hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC--
Confidence               776  89999999999999998742  567899999999999999999999998  9999999999999999542  


Q ss_pred             ccccCCchhhh-hhCCCCCCEEEcCCccCCCCCchh---ccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCC
Q 047985          159 VELRKPSLGNL-ADKLTNLKELVLGDVTISSPIPHN---LTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKL  234 (930)
Q Consensus       159 ~~~~~~~l~~~-l~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  234 (930)
                           +.++.. +.++++|++|++++|.+++..|..   +.++++|++|++++|.+++..|.  ..+++|++|++++|.+
T Consensus       140 -----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l  212 (768)
T 3rgz_A          140 -----FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNF  212 (768)
T ss_dssp             -----CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCC
T ss_pred             -----CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcC
Confidence                 233333 378999999999999999998887   88999999999999999987664  8899999999999999


Q ss_pred             CCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCccc
Q 047985          235 SDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASF  314 (930)
Q Consensus       235 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  314 (930)
                      ++.+|. ++++++|++|++++|.+++.+|..++.+++|++|++++|++++.+|..  .+++|++|++++|.+++.+|..+
T Consensus       213 ~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~  289 (768)
T 3rgz_A          213 STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL  289 (768)
T ss_dssp             CSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCS
T ss_pred             CCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHH
Confidence            998887 999999999999999999999999999999999999999999888875  89999999999999999999988


Q ss_pred             ccc-cccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCcc
Q 047985          315 GNL-RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSH  393 (930)
Q Consensus       315 ~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  393 (930)
                      ... ++|++|++++|++++.+|..++.+++|++|++++|.++|.+|...+ ..+++|++|++++|++..           
T Consensus       290 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l-~~l~~L~~L~Ls~n~l~~-----------  357 (768)
T 3rgz_A          290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL-LKMRGLKVLDLSFNEFSG-----------  357 (768)
T ss_dssp             CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHH-TTCTTCCEEECCSSEEEE-----------
T ss_pred             HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHH-hcCCCCCEEeCcCCccCc-----------
Confidence            775 9999999999999999999999999999999999999988887655 677778777777774321           


Q ss_pred             ccceeeeccCCCCCcchhhhcCC-CcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCc
Q 047985          394 RFRAVSLCSCDLTEIPKFLKNQH-HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNS  472 (930)
Q Consensus       394 ~L~~L~l~~~~l~~ip~~l~~~~-~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~  472 (930)
                                   .+|..+..++ +|++|++++|.+.+.+|..+....+++|++|++++                   |.
T Consensus       358 -------------~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~-------------------n~  405 (768)
T 3rgz_A          358 -------------ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN-------------------NG  405 (768)
T ss_dssp             -------------CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS-------------------SE
T ss_pred             -------------cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC-------------------Cc
Confidence                         4556666666 89999999999888888776632355565555555                   55


Q ss_pred             CCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCC
Q 047985          473 LTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIP  552 (930)
Q Consensus       473 l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  552 (930)
                      +++.+|..+..+ ++|++|++++|++++.+|..++.+++ |++|++++|.+++.+|..+..+++|++|++++|++++.+|
T Consensus       406 l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  483 (768)
T 3rgz_A          406 FTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP  483 (768)
T ss_dssp             EEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccccCHHHhcC-CCCCEEECcCCcccCcccHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence            566788888888 88999999999999999999999886 9999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhh
Q 047985          553 RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC  632 (930)
Q Consensus       553 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~  632 (930)
                      ..+.++++|++|++++|++++.+|.+++.+++|++|+|++|++++.+|..+  ..+++|++||+++|+++|.+|...+..
T Consensus       484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~  561 (768)
T 3rgz_A          484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQ  561 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred             HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhcc
Confidence            999999999999999999999999999999999999999999999888766  678999999999999999999775543


Q ss_pred             cccceeccccc-c--cccccccc------------CCCCC--cc--c--eeeeE---eeecccccccccccccccEEEcc
Q 047985          633 WNAMKVVNASE-L--RYMQEVIP------------FNEGN--GI--Y--DYSLT---MSNKGQMMSYKKIPDILTAVILS  688 (930)
Q Consensus       633 l~~l~~l~~~~-~--~~~~~~~~------------~~~~~--~~--~--~~~~~---~~~~~~~~~~~~~~~~L~~L~Ls  688 (930)
                      .. +..+.... .  .+......            +....  ..  .  .....   ...+|...........|+.|||+
T Consensus       562 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs  640 (768)
T 3rgz_A          562 SG-KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS  640 (768)
T ss_dssp             TT-CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred             cc-hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence            22 22111110 0  00000000            00000  00  0  00000   00111111122335679999999


Q ss_pred             cccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccC
Q 047985          689 SNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPI  768 (930)
Q Consensus       689 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~i  768 (930)
                      +|+++|.||.+|++++.|+.|||++|+++|.||..|+++++|++||||+|+++|.||..++++++|++||+|+|+|+|+|
T Consensus       641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i  720 (768)
T 3rgz_A          641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI  720 (768)
T ss_dssp             SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred             CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcCccCCcccCCCCCCCCCCCCCCCCCCC
Q 047985          769 PQGKQFATFDKTSFDGNSGLCGRPLSSECEISE  801 (930)
Q Consensus       769 P~~~~~~~~~~~s~~gn~~Lcg~~l~~~c~~~~  801 (930)
                      |.++||++|...+|.|||+|||.|+. .|....
T Consensus       721 P~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          721 PEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             CSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             CCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            99999999999999999999999987 897543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-70  Score=674.20  Aligned_cols=627  Identities=31%  Similarity=0.417  Sum_probs=525.6

Q ss_pred             cEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCch--hccCCCCCCEEEccCCCCCccCCccc-cCCCCC
Q 047985           69 HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPP--EIINLSSLSYLNLSSAAFSGQIPSEI-LELSKL  145 (930)
Q Consensus        69 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L  145 (930)
                      +++.++++.+.+   ++....++.+++|++|||++|.+.+. +|.  .++++++|++|+|++|.+.+.+|..+ +++++|
T Consensus        78 ~L~~l~~~~~~~---~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  153 (768)
T 3rgz_A           78 GLESLFLSNSHI---NGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL  153 (768)
T ss_dssp             TCCEEECTTSCE---EECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred             cccccCCcCCCc---CCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence            345555555544   33223799999999999999999876 787  89999999999999999999998876 899999


Q ss_pred             cEEEccCCCCCCCccccCCchhhh---hhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCC
Q 047985          146 AYLDLSHNSYYDPVELRKPSLGNL---ADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNIT  222 (930)
Q Consensus       146 ~~L~Ls~n~~~~~~~~~~~~l~~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  222 (930)
                      ++|++++|.+    .   +..+..   +.++++|++|++++|.+++..+.  ..+++|++|++++|.+++.+|. +++++
T Consensus       154 ~~L~Ls~n~l----~---~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~  223 (768)
T 3rgz_A          154 EVLDLSANSI----S---GANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCS  223 (768)
T ss_dssp             SEEECCSSCC----E---EETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCC
T ss_pred             CEEECCCCcc----C---CcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCC
Confidence            9999999954    2   333444   78999999999999999987764  7899999999999999988887 99999


Q ss_pred             CCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCC-cCCcEEEc
Q 047985          223 RLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL-TQLHWLSL  301 (930)
Q Consensus       223 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L  301 (930)
                      +|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..  .+++|++|++++|++++.+|..+... ++|++|++
T Consensus       224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L  301 (768)
T 3rgz_A          224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL  301 (768)
T ss_dssp             SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred             CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence            9999999999999999999999999999999999999888875  89999999999999999999998875 99999999


Q ss_pred             cCCCCCCccCcccccccccceeecccccccCCCccc-ccCCCCCCEEEccCCCCCCCCchhHHhhccc-cccEEEccCCc
Q 047985          302 ASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS-LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHK-LLYHLFLSTNR  379 (930)
Q Consensus       302 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~  379 (930)
                      ++|.+++.+|..++.+++|++|++++|+++|.+|.. +..+++|++|++++|.+++.+|...  ..++ +|+.|++++|.
T Consensus       302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~~L~~L~Ls~N~  379 (768)
T 3rgz_A          302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL--TNLSASLLTLDLSSNN  379 (768)
T ss_dssp             CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH--HHHTTTCSEEECCSSE
T ss_pred             cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH--HhhhcCCcEEEccCCC
Confidence            999999999999999999999999999999888876 9999999999999999998888654  4555 99999999997


Q ss_pred             ccccccccC-CCCccccceeeeccCCCC-CcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCC
Q 047985          380 LSLLTKATS-NTTSHRFRAVSLCSCDLT-EIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGF  457 (930)
Q Consensus       380 l~~~~~~~~-~~~~~~L~~L~l~~~~l~-~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~  457 (930)
                      +........ .....+|+.|++++|.+. .+|..+..+++|++|++++|.+++.+|..+.  .+++|+.|++++|.+++.
T Consensus       380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~  457 (768)
T 3rgz_A          380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--SLSKLRDLKLWLNMLEGE  457 (768)
T ss_dssp             EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECCSSCCCSC
T ss_pred             cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh--cCCCCCEEECCCCcccCc
Confidence            643221111 112568999999999988 7888999999999999999999999998887  788899998888888764


Q ss_pred             CC-----CCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccC
Q 047985          458 DQ-----HPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLL  532 (930)
Q Consensus       458 ~~-----~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~  532 (930)
                      .+     .++++.+++++|+++|.+|..+..+ ++|++|++++|++++.+|..++.+++ |++|+|++|+++|.+|..+.
T Consensus       458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~  535 (768)
T 3rgz_A          458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLEN-LAILKLSNNSFSGNIPAELG  535 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCEEECCGGGG
T ss_pred             CCHHHcCCCCceEEEecCCcccCcCCHHHhcC-CCCCEEEccCCccCCcCChHHhcCCC-CCEEECCCCcccCcCCHHHc
Confidence            43     5677777777777777777777777 77777777777777777777777775 77777777777777777777


Q ss_pred             CCCCccEEEccCccccccCCccccCCCCCcEecccCc----------------------cccccCcccccCCCCCcEEEc
Q 047985          533 KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDN----------------------QIRDIFPSWLGTLPDLNVLIL  590 (930)
Q Consensus       533 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N----------------------~l~~~~p~~l~~l~~L~~L~L  590 (930)
                      .+++|++|++++|+++|.+|..+..+..+..+++..+                      .+.+..+..+..++.++.+++
T Consensus       536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  615 (768)
T 3rgz_A          536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI  615 (768)
T ss_dssp             GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred             CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence            7777777777777777777777776666655554431                      234455555666667777788


Q ss_pred             cCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecc
Q 047985          591 KSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKG  670 (930)
Q Consensus       591 ~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (930)
                      ..|.+.|.+|..+  ..+++|+.|||++|+++|.+|.. +..                                      
T Consensus       616 ~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~-l~~--------------------------------------  654 (768)
T 3rgz_A          616 TSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKE-IGS--------------------------------------  654 (768)
T ss_dssp             TSCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGG-GGG--------------------------------------
T ss_pred             ccceecccCchhh--hccccccEEECcCCcccccCCHH-Hhc--------------------------------------
Confidence            8899999988766  67899999999999999999965 222                                      


Q ss_pred             cccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccC
Q 047985          671 QMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVE  750 (930)
Q Consensus       671 ~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~  750 (930)
                              ++.|+.|+|++|+++|.||..|+++++|+.||||+|+++|.||..++++++|++||||+|+++|.||.. ..
T Consensus       655 --------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~  725 (768)
T 3rgz_A          655 --------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ  725 (768)
T ss_dssp             --------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SS
T ss_pred             --------cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hh
Confidence                    345889999999999999999999999999999999999999999999999999999999999999975 44


Q ss_pred             CCCCCeeecCCCc-cccc
Q 047985          751 LTFLEFFNVSDNH-FTGP  767 (930)
Q Consensus       751 L~~L~~L~ls~N~-L~g~  767 (930)
                      +..+....+.+|+ |.|.
T Consensus       726 ~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          726 FETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             GGGSCGGGGCSCTEEEST
T ss_pred             hccCCHHHhcCCchhcCC
Confidence            5566666778886 7774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.9e-58  Score=560.93  Aligned_cols=594  Identities=22%  Similarity=0.203  Sum_probs=447.4

Q ss_pred             CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh-hhhC
Q 047985           94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN-LADK  172 (930)
Q Consensus        94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~-~l~~  172 (930)
                      +++++|+|++|.+++. .+..|+++++|++|+|++|.+++..|..++++++|++|++++|.+        ..++. .+.+
T Consensus        25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--------~~l~~~~~~~   95 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL--------SQLSDKTFAF   95 (680)
T ss_dssp             TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC--------CCCCTTTTTT
T ss_pred             CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc--------CccChhhhcc
Confidence            6788888888887764 455677888888888888888877777778888888888888754        22333 4677


Q ss_pred             CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhc--CCCCCCE
Q 047985          173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIG--TLGSLKE  250 (930)
Q Consensus       173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~  250 (930)
                      +++|++|++++|.+++..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+.  .+++|++
T Consensus        96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~  175 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK  175 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred             CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence            88888888888888777777788888888888888888777777778888888888888888777766554  4577888


Q ss_pred             EEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCC---CCCcCCcEEEccCCCCCCccCcccccccc--cceeec
Q 047985          251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSL---GNLTQLHWLSLASNDFSGELPASFGNLRS--LRTLDV  325 (930)
Q Consensus       251 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~L  325 (930)
                      |++++|.+++..|..+..+++|+.|+++++.+.+.....+   ...++|+.|++++|.+++..|.++..++.  |++|++
T Consensus       176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L  255 (680)
T 1ziw_A          176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL  255 (680)
T ss_dssp             EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred             EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence            8888888887777778888888888887776643221111   02367888888888888777777777654  888888


Q ss_pred             ccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCC
Q 047985          326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL  405 (930)
Q Consensus       326 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l  405 (930)
                      ++|++++..|..++.+++|++|++++|.+++..+.. + ..+++|+.|++++|......                ....+
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~-~~l~~L~~L~L~~~~~~~~~----------------~~~~l  317 (680)
T 1ziw_A          256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-L-HGLFNVRYLNLKRSFTKQSI----------------SLASL  317 (680)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-T-TTCTTCCEEECTTCBCCC----------------------C
T ss_pred             CCCCcCccCcccccCcccccEeeCCCCccCccChhh-h-cCCCCccEEeccchhhhccc----------------ccccc
Confidence            888887777777788888888888888777654432 2 56777777777765221100                00001


Q ss_pred             CCcc-hhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchH-Hhh
Q 047985          406 TEIP-KFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSW-ICN  483 (930)
Q Consensus       406 ~~ip-~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~-~~~  483 (930)
                      ..++ ..+..+++|++|++++|.+.+..+..+.  .+++|++|++++|.+...                  .++.. +..
T Consensus       318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~------------------~l~~~~f~~  377 (680)
T 1ziw_A          318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLR------------------TLTNETFVS  377 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT--TCTTCCEEECTTCBSCCC------------------EECTTTTGG
T ss_pred             cccChhhcccCCCCCEEECCCCccCCCChhHhc--cccCCcEEECCCCchhhh------------------hcchhhhcc
Confidence            1111 1567788999999999999987777776  788899888888865421                  11111 111


Q ss_pred             c-ccccceeecccccccCcCcccccccccCCceeecCCCccccccC-cccCCCCCccEEEccCccccccCCccccCCCCC
Q 047985          484 L-SNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP-DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNL  561 (930)
Q Consensus       484 ~-~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  561 (930)
                      + .++|+.|++++|++++..|..+..+++ |++|++++|.+++.+| ..+..+++|++|++++|++++..+..|..+++|
T Consensus       378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L  456 (680)
T 1ziw_A          378 LAHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL  456 (680)
T ss_dssp             GTTSCCCEEECTTSCCCEECTTTTTTCTT-CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC
T ss_pred             cccCcCceEECCCCCCCeEChhhhhCCCC-CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccc
Confidence            1 157999999999999988888988886 9999999999988776 678889999999999999999889999999999


Q ss_pred             cEecccCcccc--ccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceec
Q 047985          562 EFLDLGDNQIR--DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVV  639 (930)
Q Consensus       562 ~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l  639 (930)
                      +.|++++|.+.  +.+|..+..+++|++|+|++|++++..+..+  .++++|++|++++|++++..+.. +..       
T Consensus       457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~-------  526 (680)
T 1ziw_A          457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML--EGLEKLEILDLQHNNLARLWKHA-NPG-------  526 (680)
T ss_dssp             CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCGGGGSTT-STT-------
T ss_pred             ccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh--ccccccCEEeCCCCCccccchhh-ccC-------
Confidence            99999999987  5688899999999999999999998766555  67899999999999987532110 000       


Q ss_pred             cccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCcccccc
Q 047985          640 NASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGH  719 (930)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  719 (930)
                                                     .........+.|+.|+|++|+++...+..|+++++|+.|+|++|++++.
T Consensus       527 -------------------------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  575 (680)
T 1ziw_A          527 -------------------------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL  575 (680)
T ss_dssp             -------------------------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             -------------------------------CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcC
Confidence                                           0000011245699999999999944445689999999999999999987


Q ss_pred             CcccccccCCCCeeeCCCCcCcccCCcccc-CCCCCCeeecCCCcccccCCCCCCcCc
Q 047985          720 IPSCLGNLTDLESLDLSNNRFSGQIPQQLV-ELTFLEFFNVSDNHFTGPIPQGKQFAT  776 (930)
Q Consensus       720 ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~-~L~~L~~L~ls~N~L~g~iP~~~~~~~  776 (930)
                      .|..|+++++|+.|+|++|++++..|..+. .+++|+.+++++|++.+..+.-..|..
T Consensus       576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~  633 (680)
T 1ziw_A          576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN  633 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEEC
T ss_pred             CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHH
Confidence            778889999999999999999998888887 789999999999999987664233433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.6e-57  Score=550.33  Aligned_cols=597  Identities=21%  Similarity=0.221  Sum_probs=446.9

Q ss_pred             CEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCC
Q 047985           97 EWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL  176 (930)
Q Consensus        97 ~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L  176 (930)
                      +.+|.+++.++.  +|..+.  ++|++|+|++|.+++..+..++++++|++|++++|.+.       ...+..+.++++|
T Consensus         7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L   75 (680)
T 1ziw_A            7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-------KLEPELCQKLPML   75 (680)
T ss_dssp             SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-------CCCTTHHHHCTTC
T ss_pred             CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-------ccCHHHHhcccCc
Confidence            345666666653  566554  78999999999999877778999999999999999542       3335677888999


Q ss_pred             CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCC
Q 047985          177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQN  256 (930)
Q Consensus       177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  256 (930)
                      ++|++++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..++++++|++|++++|
T Consensus        76 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  155 (680)
T 1ziw_A           76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN  155 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred             CEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence            99999998888776667888899999999999888777778888889999999998888888888888888999999888


Q ss_pred             CCCCCcchhhc--CCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccc---cccccceeeccccccc
Q 047985          257 NLSGELPNSIG--NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFG---NLRSLRTLDVYECKFS  331 (930)
Q Consensus       257 ~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~n~l~  331 (930)
                      .+++..+..+.  .+++|++|++++|++++..|..+..+++|+.|+++++.+.+.....+.   ..++|++|++++|.+.
T Consensus       156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~  235 (680)
T 1ziw_A          156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS  235 (680)
T ss_dssp             CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred             cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence            88877776654  457888888888888888888888888888888888877543222111   2367788888888887


Q ss_pred             CCCcccccCCCC--CCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcc
Q 047985          332 GQIPSSLSNLTH--LSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIP  409 (930)
Q Consensus       332 ~~~p~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip  409 (930)
                      +..|..+..++.  |++|++++|.+++..+.. + ..+++|+.|++++|.+..                        ..|
T Consensus       236 ~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~-~~l~~L~~L~L~~n~l~~------------------------~~~  289 (680)
T 1ziw_A          236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-F-AWLPQLEYFFLEYNNIQH------------------------LFS  289 (680)
T ss_dssp             EECTTTTGGGGGSCCCEEECTTSCCCEECTTT-T-TTCTTCCEEECCSCCBSE------------------------ECT
T ss_pred             ccChhHhhccCcCCCCEEECCCCCcCccCccc-c-cCcccccEeeCCCCccCc------------------------cCh
Confidence            777777776644  777777777776544321 1 344555555555443221                        123


Q ss_pred             hhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccc
Q 047985          410 KFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLE  489 (930)
Q Consensus       410 ~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~  489 (930)
                      ..+..+++|+.|++++|...+.++..    .++.+..        ..+...++++.+++++|.+++..+..+..+ ++|+
T Consensus       290 ~~~~~l~~L~~L~L~~~~~~~~~~~~----~lp~i~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~  356 (680)
T 1ziw_A          290 HSLHGLFNVRYLNLKRSFTKQSISLA----SLPKIDD--------FSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLK  356 (680)
T ss_dssp             TTTTTCTTCCEEECTTCBCCC----------CCEECT--------TTTTTCTTCCEEECCSCCBCCCCTTTTTTC-TTCC
T ss_pred             hhhcCCCCccEEeccchhhhcccccc----cccccCh--------hhcccCCCCCEEECCCCccCCCChhHhccc-cCCc
Confidence            45566667777777666544322110    0000000        012234556666666666776666667777 8999


Q ss_pred             eeecccccccCcC--cccccccc-cCCceeecCCCccccccCcccCCCCCccEEEccCccccccCC-ccccCCCCCcEec
Q 047985          490 SLDLSYNNLSGLL--PQCLGNFS-DWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIP-RSLANCSNLEFLD  565 (930)
Q Consensus       490 ~L~Ls~N~l~~~~--p~~l~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~  565 (930)
                      +|++++|.+.+..  +..+..+. ..|+.|++++|++++..|..+..+++|++|++++|.+++.+| ..|.++++|++|+
T Consensus       357 ~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~  436 (680)
T 1ziw_A          357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY  436 (680)
T ss_dssp             EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred             EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence            9999999865432  22333321 249999999999999999999999999999999999998766 6899999999999


Q ss_pred             ccCccccccCcccccCCCCCcEEEccCCcccc--cCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccc
Q 047985          566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHG--LIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASE  643 (930)
Q Consensus       566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~  643 (930)
                      +++|++++..+..|..+++|+.|++++|.+.+  .+|..+  ..+++|++||+++|++++ +|...+..           
T Consensus       437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N~l~~-i~~~~~~~-----------  502 (680)
T 1ziw_A          437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNNNIAN-INDDMLEG-----------  502 (680)
T ss_dssp             CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSSCCCC-CCTTTTTT-----------
T ss_pred             cCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEEECCCCCCCc-CChhhhcc-----------
Confidence            99999999999999999999999999999974  445444  789999999999999985 44332222           


Q ss_pred             cccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCc--------hhcccccccceeeccCcc
Q 047985          644 LRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIP--------TSISNLKGLQILSLADNS  715 (930)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip--------~~l~~l~~L~~L~Ls~N~  715 (930)
                                                         ++.|+.|+|++|++++..+        ..++++++|+.|+|++|+
T Consensus       503 -----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~  547 (680)
T 1ziw_A          503 -----------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG  547 (680)
T ss_dssp             -----------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred             -----------------------------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence                                               3458899999999986422        347899999999999999


Q ss_pred             ccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCC--CcCccCCcccCCCCCCCCCC
Q 047985          716 LHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGK--QFATFDKTSFDGNSGLCGRP  792 (930)
Q Consensus       716 l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~--~~~~~~~~s~~gn~~Lcg~~  792 (930)
                      ++...+..|+++++|+.|||++|++++..|..|..+++|+.|++++|++++..|...  .+.......+.|||..|.++
T Consensus       548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            995545579999999999999999998777778999999999999999998776431  34455556677888877643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.2e-53  Score=507.58  Aligned_cols=522  Identities=20%  Similarity=0.204  Sum_probs=359.8

Q ss_pred             CCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCC
Q 047985           95 HLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLT  174 (930)
Q Consensus        95 ~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~  174 (930)
                      ++++|+|++|.+++. .|..|+++++|++|+|++|.+.+..|..|+++++|++|++++|                     
T Consensus        34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n---------------------   91 (606)
T 3t6q_A           34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN---------------------   91 (606)
T ss_dssp             TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC---------------------
T ss_pred             cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC---------------------
Confidence            456666666665543 3445556666666666666555555555555555555555554                     


Q ss_pred             CCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEcc
Q 047985          175 NLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLL  254 (930)
Q Consensus       175 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  254 (930)
                                .+++..|..++++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        92 ----------~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  161 (606)
T 3t6q_A           92 ----------PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ  161 (606)
T ss_dssp             ----------CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred             ----------cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence                      4455556667777788888888877776656667777777777777777776443334447777777777


Q ss_pred             CCCCCCCcchhhcCCCCCC--EEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985          255 QNNLSGELPNSIGNLASLE--QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG  332 (930)
Q Consensus       255 ~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~  332 (930)
                      +|.+++..|..++.+++|+  .|++++|.+++..|..+.. .+|+.|++++|.   .++..+..+.+++...+....+. 
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~-  236 (606)
T 3t6q_A          162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE-  236 (606)
T ss_dssp             SSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT-
T ss_pred             cCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhc-
Confidence            7777766667777777777  6777777776665555443 456666666664   22333333333333222211111 


Q ss_pred             CCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcch-h
Q 047985          333 QIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK-F  411 (930)
Q Consensus       333 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~-~  411 (930)
                                .+...+         ++...+ ..+.                       ..+++.+++++|.+..++. .
T Consensus       237 ----------~~~~~~---------i~~~~~-~~l~-----------------------~~~L~~L~l~~n~l~~~~~~~  273 (606)
T 3t6q_A          237 ----------DMDDED---------ISPAVF-EGLC-----------------------EMSVESINLQKHYFFNISSNT  273 (606)
T ss_dssp             ----------TSCCCC---------CCGGGG-GGGG-----------------------GSEEEEEECTTCCCSSCCTTT
T ss_pred             ----------cccccc---------cChhHh-chhh-----------------------cCceeEEEeecCccCccCHHH
Confidence                      010000         111111 1110                       1134444444444443333 3


Q ss_pred             hhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhccccccee
Q 047985          412 LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESL  491 (930)
Q Consensus       412 l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L  491 (930)
                      +..+++|++|++++|+++ .+|..+.  .+++|++|++++|.++                   +..|..+..+ ++|++|
T Consensus       274 ~~~l~~L~~L~l~~n~l~-~lp~~l~--~l~~L~~L~l~~n~l~-------------------~~~~~~~~~l-~~L~~L  330 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLS-ELPSGLV--GLSTLKKLVLSANKFE-------------------NLCQISASNF-PSLTHL  330 (606)
T ss_dssp             TTTCTTCSEEECTTSCCS-CCCSSCC--SCTTCCEEECTTCCCS-------------------BGGGGCGGGC-TTCSEE
T ss_pred             hccccCCCEEeccCCccC-CCChhhc--ccccCCEEECccCCcC-------------------cCchhhhhcc-CcCCEE
Confidence            666777777777777776 5666554  5666666666555443                   3445556666 788999


Q ss_pred             ecccccccCcCccc-ccccccCCceeecCCCcccccc--CcccCCCCCccEEEccCccccccCCccccCCCCCcEecccC
Q 047985          492 DLSYNNLSGLLPQC-LGNFSDWLSILDLQHNKFSGTI--PDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGD  568 (930)
Q Consensus       492 ~Ls~N~l~~~~p~~-l~~~~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  568 (930)
                      ++++|.+.+.+|.. +..+++ |++|++++|.+++..  |..+..+++|++|++++|++++..|..|..+++|+.|++++
T Consensus       331 ~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLENLEN-LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF  409 (606)
T ss_dssp             ECCSCSSCCBCCSSTTTTCTT-CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred             ECCCCCcccccchhhhhccCc-CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence            99999888766654 777775 999999999888765  77788889999999999999888888899999999999999


Q ss_pred             ccccccCccc-ccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCccc-CCh-HHHhhcccceeccccccc
Q 047985          569 NQIRDIFPSW-LGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGK-LPS-MAFQCWNAMKVVNASELR  645 (930)
Q Consensus       569 N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~-~~~~~l~~l~~l~~~~~~  645 (930)
                      |++++..|.. +..+++|++|++++|++.+..|..+  ..+++|++|++++|++++. +|. ..+               
T Consensus       410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~---------------  472 (606)
T 3t6q_A          410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSL---------------  472 (606)
T ss_dssp             CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGG---------------
T ss_pred             CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhh---------------
Confidence            9998876544 8888999999999999988776655  6788999999999988752 221 001               


Q ss_pred             cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCccccc
Q 047985          646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG  725 (930)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~  725 (930)
                                                     ..++.|+.|++++|++++.+|..|+.+++|+.|+|++|++++.+|..++
T Consensus       473 -------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  521 (606)
T 3t6q_A          473 -------------------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS  521 (606)
T ss_dssp             -------------------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred             -------------------------------ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence                                           1135688999999999999899999999999999999999999999999


Q ss_pred             ccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCC
Q 047985          726 NLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIP  769 (930)
Q Consensus       726 ~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP  769 (930)
                      ++++| .|||++|++++.+|..+..+++|++|++++|++.+..+
T Consensus       522 ~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          522 HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999 99999999999888889999999999999999987665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.4e-54  Score=534.44  Aligned_cols=554  Identities=23%  Similarity=0.264  Sum_probs=339.4

Q ss_pred             CCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCch-hhhhhCCCCCCEEEcCCccCCCCCchhccCC
Q 047985          119 SSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSL-GNLADKLTNLKELVLGDVTISSPIPHNLTYL  197 (930)
Q Consensus       119 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  197 (930)
                      ++|++|||++|.+++..|..++++++|++|+|++|...       ..+ +..+.++++|++|++++|.+.+..|..|.++
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l   96 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL   96 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-------cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence            45566666666665555555666666666666655210       122 2334445555555555555555556666666


Q ss_pred             CCCCEEEccCCCCCCCCccc--ccCCCCCcEEEccCCCCCCchh-hhhcCCCCCCEEEccCCCCCCCcchhhcCC--CCC
Q 047985          198 SSLTTLSLSGCDLRGRIPSS--LGNITRLIHLDLSFNKLSDELP-TFIGTLGSLKELDLLQNNLSGELPNSIGNL--ASL  272 (930)
Q Consensus       198 ~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L  272 (930)
                      ++|++|+|++|.+++.+|..  +.++++|++|++++|.+++..+ ..++++++|++|++++|.+++..|..+..+  ++|
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L  176 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL  176 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence            66666666666666544443  5666666666666666655433 456666666666666666666555555555  566


Q ss_pred             CEEEccCCCCCCCCCCCCCCCcC------CcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCE
Q 047985          273 EQVDLSLNRFLGKVPSSLGNLTQ------LHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSF  346 (930)
Q Consensus       273 ~~L~Ls~n~l~~~~p~~l~~l~~------L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  346 (930)
                      +.|+++.|.+.+..|..+..+++      |+.|++++|.+++..+..+....                     ..+.++.
T Consensus       177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l---------------------~~~~l~~  235 (844)
T 3j0a_A          177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI---------------------SKSQAFS  235 (844)
T ss_dssp             CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS---------------------CSCCBSE
T ss_pred             ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc---------------------Ccccccc
Confidence            66666666666655555544443      55555555555554444433210                     1123334


Q ss_pred             EEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccC-CCCccccceeeeccCCCCC-cchhhhcCCCcCEEeCC
Q 047985          347 LDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATS-NTTSHRFRAVSLCSCDLTE-IPKFLKNQHHLELLDLA  424 (930)
Q Consensus       347 L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~~L~~L~l~~~~l~~-ip~~l~~~~~L~~L~Ls  424 (930)
                      |.++.+.......                 .+.+........ .....+++.|++++|.+.. .|..+..+++|+.|+|+
T Consensus       236 L~l~~~~~~~~~~-----------------~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  298 (844)
T 3j0a_A          236 LILAHHIMGAGFG-----------------FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA  298 (844)
T ss_dssp             EECCSSCCBCSSS-----------------CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred             eeccccccccccc-----------------ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence            4433222111000                 000000000000 0011223333333333331 23344555566666666


Q ss_pred             CCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcc
Q 047985          425 SNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQ  504 (930)
Q Consensus       425 ~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~  504 (930)
                      +|++.+..|..+.  .+++|++|++++|                   .+++..|..+..+ ++|+.|++++|++.+..+.
T Consensus       299 ~n~i~~~~~~~~~--~l~~L~~L~Ls~N-------------------~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~  356 (844)
T 3j0a_A          299 YNKINKIADEAFY--GLDNLQVLNLSYN-------------------LLGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQ  356 (844)
T ss_dssp             SCCCCEECTTTTT--TCSSCCEEEEESC-------------------CCSCCCSCSCSSC-TTCCEEECCSCCCCCCCSS
T ss_pred             CCcCCCCChHHhc--CCCCCCEEECCCC-------------------CCCccCHHHhcCC-CCCCEEECCCCCCCccChh
Confidence            6666555554444  4455555544444                   4443445555555 7888888888888877777


Q ss_pred             cccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccC-cccccCCC
Q 047985          505 CLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF-PSWLGTLP  583 (930)
Q Consensus       505 ~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~  583 (930)
                      .|..+++ |++|+|++|.+++ ++    .+++|+.|++++|+++ .+|..   ..+++.|++++|++++.. +..+..++
T Consensus       357 ~~~~l~~-L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~  426 (844)
T 3j0a_A          357 TFKFLEK-LQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVP  426 (844)
T ss_dssp             CSCSCCC-CCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred             hhcCCCC-CCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCC
Confidence            7888885 9999999988874 22    2678889999999888 34433   467889999999998863 33456889


Q ss_pred             CCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceee
Q 047985          584 DLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYS  663 (930)
Q Consensus       584 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  663 (930)
                      +|++|+|++|++++..+... ...+++|+.|++++|.+++..+....                                 
T Consensus       427 ~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~N~l~~~~~~~~~---------------------------------  472 (844)
T 3j0a_A          427 HLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQLAWETELC---------------------------------  472 (844)
T ss_dssp             TCCEEEEESCCCCCCCSSSS-SCSCTTCCBCEEESCCCSSSCCSCCC---------------------------------
T ss_pred             ccceeeCCCCcccccccccc-cccCCccccccCCCCccccccccccc---------------------------------
Confidence            99999999999887654322 24578899999999988743221100                                 


Q ss_pred             eEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCccc
Q 047985          664 LTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQ  743 (930)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~  743 (930)
                               ......++.|+.|+|++|++++.+|..|+.+++|+.|+|++|++++..|..+.  ++|+.|||++|++++.
T Consensus       473 ---------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~  541 (844)
T 3j0a_A          473 ---------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP  541 (844)
T ss_dssp             ---------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred             ---------hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence                     00001135688999999999999999999999999999999999987777776  8999999999999999


Q ss_pred             CCccccCCCCCCeeecCCCcccccCCCCCCcCccCCcccCCCCCCCCCCCCCCCCCCC
Q 047985          744 IPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISE  801 (930)
Q Consensus       744 ip~~l~~L~~L~~L~ls~N~L~g~iP~~~~~~~~~~~s~~gn~~Lcg~~l~~~c~~~~  801 (930)
                      +|..|.   .|+.|++++|++.+..+.    ..|..-...+|..+||.|....|..+.
T Consensus       542 ~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~p~  592 (844)
T 3j0a_A          542 NPDVFV---SLSVLDITHNKFICECEL----STFINWLNHTNVTIAGPPADIYCVYPD  592 (844)
T ss_dssp             CSCCCS---SCCEEEEEEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred             ChhHhC---CcCEEEecCCCccccccc----HHHHHHHHhcCcccccccccCccCCch
Confidence            997754   688999999999887663    223222234567788877777786543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.3e-52  Score=498.81  Aligned_cols=536  Identities=20%  Similarity=0.216  Sum_probs=368.6

Q ss_pred             EEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCC
Q 047985           98 WLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLK  177 (930)
Q Consensus        98 ~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~  177 (930)
                      .++.++..++.  +|..+.  +++++|+|++|.+++..|..++++++|++|++++|                        
T Consensus        16 ~~~c~~~~l~~--iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n------------------------   67 (606)
T 3t6q_A           16 TYNCENLGLNE--IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC------------------------   67 (606)
T ss_dssp             EEECTTSCCSS--CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC------------------------
T ss_pred             eEECCCCCccc--CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCC------------------------
Confidence            55666655542  455443  25666666666666555555555555555555555                        


Q ss_pred             EEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCC
Q 047985          178 ELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN  257 (930)
Q Consensus       178 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  257 (930)
                             .+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.
T Consensus        68 -------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~  140 (606)
T 3t6q_A           68 -------QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH  140 (606)
T ss_dssp             -------CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred             -------ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc
Confidence                   2334445555666666666666666665555556666666666666666655545555555555555555555


Q ss_pred             CCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCc--EEEccCCCCCCccCcccccccccceeecccccccCCCc
Q 047985          258 LSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLH--WLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP  335 (930)
Q Consensus       258 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  335 (930)
                      +++..+..+..+++|++|++++|.+++..|..++.+++|+  .|++++|.+++..|..+.. .+|++|++++|.   .++
T Consensus       141 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~  216 (606)
T 3t6q_A          141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLL  216 (606)
T ss_dssp             CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHH
T ss_pred             ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHH
Confidence            5542222233355555555555555544444445555555  4555555555444433322 344444444443   122


Q ss_pred             ccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcC
Q 047985          336 SSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQ  415 (930)
Q Consensus       336 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~  415 (930)
                      ..+..+.++....+....+.                          ..            ....     +.  +..+..+
T Consensus       217 ~~~~~l~~~~l~~l~~~~~~--------------------------~~------------~~~~-----i~--~~~~~~l  251 (606)
T 3t6q_A          217 VIFKGLKNSTIQSLWLGTFE--------------------------DM------------DDED-----IS--PAVFEGL  251 (606)
T ss_dssp             HHHHHTTTCEEEEEECCCCT--------------------------TS------------CCCC-----CC--GGGGGGG
T ss_pred             HHhhhccccchhheechhhc--------------------------cc------------cccc-----cC--hhHhchh
Confidence            22222222222222111111                          00            0000     00  1122222


Q ss_pred             C--CcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeec
Q 047985          416 H--HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDL  493 (930)
Q Consensus       416 ~--~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~L  493 (930)
                      .  +|+.|++++|.+.+..+..+.  .+++|++|++++|+++                    .+|..+..+ ++|++|++
T Consensus       252 ~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~--------------------~lp~~l~~l-~~L~~L~l  308 (606)
T 3t6q_A          252 CEMSVESINLQKHYFFNISSNTFH--CFSGLQELDLTATHLS--------------------ELPSGLVGL-STLKKLVL  308 (606)
T ss_dssp             GGSEEEEEECTTCCCSSCCTTTTT--TCTTCSEEECTTSCCS--------------------CCCSSCCSC-TTCCEEEC
T ss_pred             hcCceeEEEeecCccCccCHHHhc--cccCCCEEeccCCccC--------------------CCChhhccc-ccCCEEEC
Confidence            2  689999999999877776666  6788888888777665                    566666666 89999999


Q ss_pred             ccccccCcCcccccccccCCceeecCCCccccccCcc-cCCCCCccEEEccCccccccC--CccccCCCCCcEecccCcc
Q 047985          494 SYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDN-LLKGNILKVIDLSDNLLQGRI--PRSLANCSNLEFLDLGDNQ  570 (930)
Q Consensus       494 s~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~  570 (930)
                      ++|.+++..|..+..++. |++|++++|.+.+.+|.. +..+++|++|++++|.+++..  +..+..+++|++|++++|+
T Consensus       309 ~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  387 (606)
T 3t6q_A          309 SANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE  387 (606)
T ss_dssp             TTCCCSBGGGGCGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred             ccCCcCcCchhhhhccCc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc
Confidence            999999988989999996 999999999999877754 889999999999999999876  7889999999999999999


Q ss_pred             ccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccccccccc
Q 047985          571 IRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEV  650 (930)
Q Consensus       571 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~  650 (930)
                      +++..|..+..+++|++|++++|++.+..+.. .+..+++|++|++++|.+++..|.. +..                  
T Consensus       388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~~------------------  447 (606)
T 3t6q_A          388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLSHSLLDISSEQL-FDG------------------  447 (606)
T ss_dssp             CEEECTTTTTTCTTCSEEECTTCCEECCTTCC-TTTTCTTCCEEECTTCCCBTTCTTT-TTT------------------
T ss_pred             CCcCCHHHhcCCccCCeEECCCCcCCCcccch-hhhCcccCCEEECCCCccCCcCHHH-HhC------------------
Confidence            99999999999999999999999999876544 2367899999999999998766532 111                  


Q ss_pred             ccCCCCCccceeeeEeeecccccccccccccccEEEccccccccc---CchhcccccccceeeccCccccccCccccccc
Q 047985          651 IPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGE---IPTSISNLKGLQILSLADNSLHGHIPSCLGNL  727 (930)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~---ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L  727 (930)
                                                  ++.|+.|++++|.+++.   .+..++.+++|+.|+|++|++++.+|..|+++
T Consensus       448 ----------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  499 (606)
T 3t6q_A          448 ----------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL  499 (606)
T ss_dssp             ----------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             ----------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence                                        35689999999999873   33678999999999999999999999999999


Q ss_pred             CCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCC-CCcCccCCcccCCCCCCCC
Q 047985          728 TDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG-KQFATFDKTSFDGNSGLCG  790 (930)
Q Consensus       728 ~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~-~~~~~~~~~s~~gn~~Lcg  790 (930)
                      ++|+.|||++|++++.+|..+.+++.| +|++++|++++.+|.. ..+.......+.|||..|.
T Consensus       500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            999999999999999999999999999 9999999999877753 2333444455667766553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.1e-52  Score=502.25  Aligned_cols=459  Identities=22%  Similarity=0.232  Sum_probs=285.3

Q ss_pred             cCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCC-chhhhhcCCCCCCEEEccCCCCCCCcc
Q 047985          185 TISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD-ELPTFIGTLGSLKELDLLQNNLSGELP  263 (930)
Q Consensus       185 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p  263 (930)
                      .+++..|..++++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..|
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred             cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence            4444445555566666666666666555444555555555555555555544 335555555555555555555554444


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeeccccccc-CCCcccccCCC
Q 047985          264 NSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFS-GQIPSSLSNLT  342 (930)
Q Consensus       264 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~  342 (930)
                      ..++.+++|+.                    .+++|++++|.+++..+..+... +|++|++++|.+. +.+|..+.+++
T Consensus       171 ~~~~~l~~L~~--------------------~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~  229 (606)
T 3vq2_A          171 NDLQFLRENPQ--------------------VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLA  229 (606)
T ss_dssp             TTTHHHHHCTT--------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTT
T ss_pred             hhhhhhhcccc--------------------ccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccc
Confidence            44443333320                    01144444444443333333222 4444555444443 23344444455


Q ss_pred             CCCEEEccCCCCCCCCc-----hhHHhhccccccEEEccCCcccccccccCCCCccccceeee-ccCCCC-CcchhhhcC
Q 047985          343 HLSFLDFSLNNFSGKMD-----LDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSL-CSCDLT-EIPKFLKNQ  415 (930)
Q Consensus       343 ~L~~L~Ls~n~l~~~~~-----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l-~~~~l~-~ip~~l~~~  415 (930)
                      .|+.+++..+.+.+...     ...+ ..+.                       ...++.+.+ ..+.+. .+|. +..+
T Consensus       230 ~L~~l~l~~~~~~~~~~l~~~~~~~~-~~l~-----------------------~l~l~~l~l~~~~~~~~~~~~-~~~l  284 (606)
T 3vq2_A          230 GLHVHRLILGEFKDERNLEIFEPSIM-EGLC-----------------------DVTIDEFRLTYTNDFSDDIVK-FHCL  284 (606)
T ss_dssp             TCEEEEEEEECCTTSCCCSCCCGGGG-TTGG-----------------------GSEEEEEEECCCTTCCGGGGS-CGGG
T ss_pred             ccccccccccccccCCcccccChHHh-hhhh-----------------------hccHhheeccccccccccccc-cccC
Confidence            55544444333322110     0000 0000                       112223333 223333 2233 5556


Q ss_pred             CCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeeccc
Q 047985          416 HHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSY  495 (930)
Q Consensus       416 ~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~  495 (930)
                      ++|+.|++++|.+. .+| .+.  .+++|+.|++++|                   .+ +.+|. + .+ ++|++|++++
T Consensus       285 ~~L~~L~l~~~~~~-~l~-~l~--~~~~L~~L~l~~n-------------------~l-~~lp~-~-~l-~~L~~L~l~~  337 (606)
T 3vq2_A          285 ANVSAMSLAGVSIK-YLE-DVP--KHFKWQSLSIIRC-------------------QL-KQFPT-L-DL-PFLKSLTLTM  337 (606)
T ss_dssp             TTCSEEEEESCCCC-CCC-CCC--TTCCCSEEEEESC-------------------CC-SSCCC-C-CC-SSCCEEEEES
T ss_pred             CCCCEEEecCccch-hhh-hcc--ccccCCEEEcccc-------------------cC-ccccc-C-CC-CccceeeccC
Confidence            66666666666653 233 222  3444444444444                   44 35552 2 44 7788888888


Q ss_pred             ccccCcCcccccccccCCceeecCCCccccc--cCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccc
Q 047985          496 NNLSGLLPQCLGNFSDWLSILDLQHNKFSGT--IPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD  573 (930)
Q Consensus       496 N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  573 (930)
                      |...+.+  .+..+++ |++|++++|++++.  +|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++++
T Consensus       338 n~~~~~~--~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~  413 (606)
T 3vq2_A          338 NKGSISF--KKVALPS-LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR  413 (606)
T ss_dssp             CSSCEEC--CCCCCTT-CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEES
T ss_pred             CcCccch--hhccCCC-CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCC
Confidence            8655443  4556664 88888888888765  36777788888888888888875 45778888888888888888888


Q ss_pred             cCc-ccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCccc-CChHHHhhcccceeccccccccccccc
Q 047985          574 IFP-SWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGK-LPSMAFQCWNAMKVVNASELRYMQEVI  651 (930)
Q Consensus       574 ~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~~~~~l~~l~~l~~~~~~~~~~~~  651 (930)
                      ..| ..+..+++|++|++++|++.+..|..+  ..+++|++|++++|.+++. +|.. +.                    
T Consensus       414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~--------------------  470 (606)
T 3vq2_A          414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNV-FA--------------------  470 (606)
T ss_dssp             TTTTTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT--------------------
T ss_pred             ccChhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHHh-hc--------------------
Confidence            877 677888888888888888888776655  6678888888888888763 3321 11                    


Q ss_pred             cCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCC
Q 047985          652 PFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLE  731 (930)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~  731 (930)
                                                .++.|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..++++++|+
T Consensus       471 --------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  524 (606)
T 3vq2_A          471 --------------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS  524 (606)
T ss_dssp             --------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred             --------------------------cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence                                      134588899999999988899999999999999999999998899999999999


Q ss_pred             eeeCCCCcCcccCCccccCCC-CCCeeecCCCcccccCCC
Q 047985          732 SLDLSNNRFSGQIPQQLVELT-FLEFFNVSDNHFTGPIPQ  770 (930)
Q Consensus       732 ~LdLs~N~lsg~ip~~l~~L~-~L~~L~ls~N~L~g~iP~  770 (930)
                      .|||++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus       525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999998 6787788887 599999999999876664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.9e-53  Score=507.89  Aligned_cols=506  Identities=22%  Similarity=0.293  Sum_probs=363.8

Q ss_pred             cHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcc---cceEecCCCCcEEEEEcCCCCCccc
Q 047985            7 HGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSW---DGVQCNENTGHVIKLDLSSSCLQGS   83 (930)
Q Consensus         7 ~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w---~gv~C~~~~~~v~~L~L~~~~l~g~   83 (930)
                      ..+|++||.+||.++..+.      |...-..++...+|..    +++||.|   +||+|+.. |||++|+|+++.+.|.
T Consensus        28 ~~~d~~aL~~~~~~~~~~~------w~~~~~~~~~~~~W~~----~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~   96 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKN------WSQQGFGTQPGANWNF----NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGR   96 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGG------CCCCC------CCCCC----SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCCC------cccCCcCCccCCCCCC----CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCc
Confidence            3479999999999987542      1111122345679987    6899999   99999865 8999999999999999


Q ss_pred             ccCcccccCCCCCCEEECCCCCC------CC-----CCCchhccCCCCCCEEEccCCCCCccCCccccC-CCCCcEEEcc
Q 047985           84 INSSSSLFKLVHLEWLDLAFNDF------DG-----SEIPPEIINLSSLSYLNLSSAAFSGQIPSEILE-LSKLAYLDLS  151 (930)
Q Consensus        84 ~~~~~~l~~l~~L~~L~Ls~n~~------~~-----~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls  151 (930)
                      +++  ++++|++|++|+|++|.+      .+     ..+|...  +..|+ ++++++.+.+.+|..+.. +..+..+++.
T Consensus        97 lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~  171 (636)
T 4eco_A           97 VPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQ  171 (636)
T ss_dssp             ECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTT
T ss_pred             CCh--HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcc
Confidence            987  999999999999999976      11     0245444  56677 888888888888776652 2233333333


Q ss_pred             CCCCCCCccccCCchhhhhhCCCCCCEEEcC--CccCCCCCchhccCCCCCCEEEccCCCCCCC----------------
Q 047985          152 HNSYYDPVELRKPSLGNLADKLTNLKELVLG--DVTISSPIPHNLTYLSSLTTLSLSGCDLRGR----------------  213 (930)
Q Consensus       152 ~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----------------  213 (930)
                      ...+.             ......++.+.+.  .|.+++ +|..++++++|++|+|++|.+++.                
T Consensus       172 ~~~~~-------------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~  237 (636)
T 4eco_A          172 QKSIK-------------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ  237 (636)
T ss_dssp             SCCCC-------------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             ccccc-------------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence            22110             0011122222222  356667 777888888888888888888875                


Q ss_pred             -Cccccc--CCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCC-CCC-CcchhhcCC------CCCCEEEccCCCC
Q 047985          214 -IPSSLG--NITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN-LSG-ELPNSIGNL------ASLEQVDLSLNRF  282 (930)
Q Consensus       214 -~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~Ls~n~l  282 (930)
                       +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|. ++| .+|..++.+      ++|++|++++|++
T Consensus       238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence             788877  88888888888888888888888888888888888887 877 788777765      8888888888888


Q ss_pred             CCCCCC--CCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCC-CCEEEccCCCCCCCCc
Q 047985          283 LGKVPS--SLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTH-LSFLDFSLNNFSGKMD  359 (930)
Q Consensus       283 ~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~~  359 (930)
                      + .+|.  .++++++|++|++++|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|
T Consensus       318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp  393 (636)
T 4eco_A          318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIP  393 (636)
T ss_dssp             S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred             C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccc
Confidence            7 7777  78888888888888888887788 7888888888888888888 77777888888 888888888876 343


Q ss_pred             hhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCC
Q 047985          360 LDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDP  439 (930)
Q Consensus       360 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~  439 (930)
                      ....                                                ...+++|++|++++|.+.+.+|..+...
T Consensus       394 ~~~~------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          394 NIFD------------------------------------------------AKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             SCCC------------------------------------------------TTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             hhhh------------------------------------------------hcccCccCEEECcCCcCCCcchhhhccc
Confidence            2110                                                0012356666666666666666544310


Q ss_pred             -----CCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCccccccccc---
Q 047985          440 -----SMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSD---  511 (930)
Q Consensus       440 -----~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~---  511 (930)
                           .+++|++|++++|+++                    .+|..++..+++|++|++++|+++ .+|........   
T Consensus       426 ~~~~~~~~~L~~L~Ls~N~l~--------------------~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~  484 (636)
T 4eco_A          426 DPTPFKGINVSSINLSNNQIS--------------------KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENF  484 (636)
T ss_dssp             CSSCCCCCCEEEEECCSSCCC--------------------SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEEC
T ss_pred             ccccccCCCCCEEECcCCccC--------------------cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccc
Confidence                 2334555555444433                    455555543377888888888877 45543332210   


Q ss_pred             ----CCceeecCCCccccccCcccC--CCCCccEEEccCccccccCCccccCCCCCcEecc------cCccccccCcccc
Q 047985          512 ----WLSILDLQHNKFSGTIPDNLL--KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDL------GDNQIRDIFPSWL  579 (930)
Q Consensus       512 ----~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~l  579 (930)
                          +|++|+|++|+++ .+|..+.  .+++|++|+|++|++++ +|..+.++++|++|+|      ++|++.+.+|..+
T Consensus       485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l  562 (636)
T 4eco_A          485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI  562 (636)
T ss_dssp             TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred             cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence                3888888888888 6777776  78888888888888887 7778888888888888      5688899999999


Q ss_pred             cCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCc
Q 047985          580 GTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT  622 (930)
Q Consensus       580 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~  622 (930)
                      ..+++|++|+|++|++ +.+|..+    .++|+.||+++|++.
T Consensus       563 ~~l~~L~~L~Ls~N~l-~~ip~~~----~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          563 TLCPSLTQLQIGSNDI-RKVNEKI----TPNISVLDIKDNPNI  600 (636)
T ss_dssp             GGCSSCCEEECCSSCC-CBCCSCC----CTTCCEEECCSCTTC
T ss_pred             hcCCCCCEEECCCCcC-CccCHhH----hCcCCEEECcCCCCc
Confidence            9999999999999999 6666654    279999999999886

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3e-51  Score=492.30  Aligned_cols=502  Identities=20%  Similarity=0.169  Sum_probs=377.0

Q ss_pred             hhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCC
Q 047985          192 HNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLAS  271 (930)
Q Consensus       192 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  271 (930)
                      ..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++
T Consensus        50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  129 (606)
T 3vq2_A           50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT  129 (606)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred             hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence            34444444444444444555445555666666666666666666666666666677777777777776555566777777


Q ss_pred             CCEEEccCCCCCC-CCCCCCCCCcCCcEEEccCCCCCCccCcccccccccc----eeecccccccCCCcccccCCCCCCE
Q 047985          272 LEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLR----TLDVYECKFSGQIPSSLSNLTHLSF  346 (930)
Q Consensus       272 L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~  346 (930)
                      |++|++++|.+++ .+|..|+++++|++|++++|++++..|..++.+++|+    +|++++|.+++..+..+.. .+|+.
T Consensus       130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~  208 (606)
T 3vq2_A          130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHE  208 (606)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEE
T ss_pred             CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeee
Confidence            7777777777765 4577777888888888888888777777777777665    8999999998665555544 48999


Q ss_pred             EEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeC-CC
Q 047985          347 LDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDL-AS  425 (930)
Q Consensus       347 L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~L-s~  425 (930)
                      |++++|.+.+......+ .+++.|+.+++..+.+..........               ...+..+..+ .++.+++ ..
T Consensus       209 L~L~~n~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~l~~~~---------------~~~~~~l~~l-~l~~l~l~~~  271 (606)
T 3vq2_A          209 LTLRGNFNSSNIMKTCL-QNLAGLHVHRLILGEFKDERNLEIFE---------------PSIMEGLCDV-TIDEFRLTYT  271 (606)
T ss_dssp             EEEESCCSCHHHHHHHH-HTTTTCEEEEEEEECCTTSCCCSCCC---------------GGGGTTGGGS-EEEEEEECCC
T ss_pred             eeccCCccchhHHHHHh-ccccccccccccccccccCCcccccC---------------hHHhhhhhhc-cHhheecccc
Confidence            99999998765444444 78888888888765433222111000               0122222333 4677777 77


Q ss_pred             CCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCccc
Q 047985          426 NKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQC  505 (930)
Q Consensus       426 N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~  505 (930)
                      |.+.+.+|. +.  .+++|+.|++++|.++.                    +| .+..+ ++|++|++++|.+ +.+| .
T Consensus       272 ~~~~~~~~~-~~--~l~~L~~L~l~~~~~~~--------------------l~-~l~~~-~~L~~L~l~~n~l-~~lp-~  324 (606)
T 3vq2_A          272 NDFSDDIVK-FH--CLANVSAMSLAGVSIKY--------------------LE-DVPKH-FKWQSLSIIRCQL-KQFP-T  324 (606)
T ss_dssp             TTCCGGGGS-CG--GGTTCSEEEEESCCCCC--------------------CC-CCCTT-CCCSEEEEESCCC-SSCC-C
T ss_pred             ccccccccc-cc--cCCCCCEEEecCccchh--------------------hh-hcccc-ccCCEEEcccccC-cccc-c
Confidence            788877776 43  67788888887776653                    33 34444 7899999999999 6788 4


Q ss_pred             ccccccCCceeecCCCccccccCcccCCCCCccEEEccCcccccc--CCccccCCCCCcEecccCccccccCcccccCCC
Q 047985          506 LGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGR--IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLP  583 (930)
Q Consensus       506 l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  583 (930)
                      + .++. |++|++++|...+.+  .+..+++|++|++++|++++.  .|..+..+++|++|++++|.+++. |..+..++
T Consensus       325 ~-~l~~-L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~  399 (606)
T 3vq2_A          325 L-DLPF-LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLE  399 (606)
T ss_dssp             C-CCSS-CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCT
T ss_pred             C-CCCc-cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCC
Confidence            5 7775 999999999766544  567889999999999999977  488899999999999999999885 58899999


Q ss_pred             CCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceee
Q 047985          584 DLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYS  663 (930)
Q Consensus       584 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  663 (930)
                      +|++|++++|++.+..+.. .+..+++|++|++++|.+++.+|.. +..                               
T Consensus       400 ~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~~-------------------------------  446 (606)
T 3vq2_A          400 ELQHLDFQHSTLKRVTEFS-AFLSLEKLLYLDISYTNTKIDFDGI-FLG-------------------------------  446 (606)
T ss_dssp             TCCEEECTTSEEESTTTTT-TTTTCTTCCEEECTTSCCEECCTTT-TTT-------------------------------
T ss_pred             CCCeeECCCCccCCccChh-hhhccccCCEEECcCCCCCccchhh-hcC-------------------------------
Confidence            9999999999999887622 2367899999999999998766642 111                               


Q ss_pred             eEeeecccccccccccccccEEEccccccccc-CchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcc
Q 047985          664 LTMSNKGQMMSYKKIPDILTAVILSSNRFDGE-IPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSG  742 (930)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg  742 (930)
                                     .+.|+.|++++|.+++. +|..++.+++|+.|+|++|++++.+|..++++++|++|+|++|++++
T Consensus       447 ---------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  511 (606)
T 3vq2_A          447 ---------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF  511 (606)
T ss_dssp             ---------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ---------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence                           34589999999999984 78899999999999999999999999999999999999999999999


Q ss_pred             cCCccccCCCCCCeeecCCCcccccCCCC-CCcC-ccCCcccCCCCCCCCCC
Q 047985          743 QIPQQLVELTFLEFFNVSDNHFTGPIPQG-KQFA-TFDKTSFDGNSGLCGRP  792 (930)
Q Consensus       743 ~ip~~l~~L~~L~~L~ls~N~L~g~iP~~-~~~~-~~~~~s~~gn~~Lcg~~  792 (930)
                      .+|..+..+++|++|++++|+++ .+|.. ..+. ......+.|||..|.++
T Consensus       512 ~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          512 LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            99999999999999999999999 67765 1121 23344567888777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4e-51  Score=498.59  Aligned_cols=488  Identities=21%  Similarity=0.287  Sum_probs=325.4

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCC-CCCCCC--Ccc------------cceEecCCCCc
Q 047985            5 LCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEE-GNNIDC--CSW------------DGVQCNENTGH   69 (930)
Q Consensus         5 ~c~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~-~~~~~~--C~w------------~gv~C~~~~~~   69 (930)
                      .+..+|++||++||+++.++                   +|+... ....+|  |.|            .||+|+. .+|
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~-------------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~  324 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK-------------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGR  324 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG-------------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSC
T ss_pred             ccchHHHHHHHHHHHHcCCC-------------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCC
Confidence            45568999999999999643                   565420 001345  999            9999987 589


Q ss_pred             EEEEEcCCCCCcccccCcccccCCCCCCEEEC-CCCCCCCCCCchhc---------------------------------
Q 047985           70 VIKLDLSSSCLQGSINSSSSLFKLVHLEWLDL-AFNDFDGSEIPPEI---------------------------------  115 (930)
Q Consensus        70 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~L-s~n~~~~~~ip~~l---------------------------------  115 (930)
                      |+.|+|+++++.|.+++  .+++|++|++|+| ++|.++|. .|...                                 
T Consensus       325 V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          325 VTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             EEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             EEEEECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            99999999999999987  9999999999999 88876654 12110                                 


Q ss_pred             ------------------cCCCCCCEEEccC--CCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCC
Q 047985          116 ------------------INLSSLSYLNLSS--AAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTN  175 (930)
Q Consensus       116 ------------------~~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~  175 (930)
                                        .....++.+.+..  |.+++ +|.                               .+.++++
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-------------------------------~l~~L~~  449 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-------------------------------AIQRLTK  449 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-------------------------------GGGGCTT
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-------------------------------HHhcCCC
Confidence                              0111122222221  33443 444                               4445555


Q ss_pred             CCEEEcCCccCCC-----------------CCchhcc--CCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCC-CC
Q 047985          176 LKELVLGDVTISS-----------------PIPHNLT--YLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK-LS  235 (930)
Q Consensus       176 L~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~  235 (930)
                      |++|++++|.+++                 .+|..++  ++++|++|+|++|.+.+.+|..++++++|++|++++|+ ++
T Consensus       450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls  529 (876)
T 4ecn_A          450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS  529 (876)
T ss_dssp             CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred             CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence            5555555555555                 4788877  88999999999998888889889999999999999997 88


Q ss_pred             C-chhhhhcCCC-------CCCEEEccCCCCCCCcch--hhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCC
Q 047985          236 D-ELPTFIGTLG-------SLKELDLLQNNLSGELPN--SIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASND  305 (930)
Q Consensus       236 ~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  305 (930)
                      + .+|..++.++       +|++|+|++|.++ .+|.  .++++++|+.|+|++|+++ .+| .|+.+++|+.|+|++|.
T Consensus       530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSC
T ss_pred             cccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCc
Confidence            7 7887666554       8999999999998 7888  8899999999999999988 777 88899999999999999


Q ss_pred             CCCccCcccccccc-cceeecccccccCCCcccccCCCC--CCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccc
Q 047985          306 FSGELPASFGNLRS-LRTLDVYECKFSGQIPSSLSNLTH--LSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL  382 (930)
Q Consensus       306 l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  382 (930)
                      ++ .+|..+..+++ |++|++++|+++ .+|..+..++.  |+.|++++|.+.+.+|...                    
T Consensus       607 l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~--------------------  664 (876)
T 4ecn_A          607 IE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS--------------------  664 (876)
T ss_dssp             CS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS--------------------
T ss_pred             cc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch--------------------
Confidence            88 78888888888 999999999988 77877776654  8889999888887654210                    


Q ss_pred             cccccCCCCccccceeeeccCCCCCcchhh-hcCCCcCEEeCCCCCCcCCCCccccCCC------CCCceEEeccCccCc
Q 047985          383 LTKATSNTTSHRFRAVSLCSCDLTEIPKFL-KNQHHLELLDLASNKINGKVPKWLLDPS------MQNFGHLNLSHNFLT  455 (930)
Q Consensus       383 ~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l-~~~~~L~~L~Ls~N~l~~~~p~~~~~~~------l~~L~~L~Ls~N~l~  455 (930)
                        .........+|+.|++++|.+..+|..+ ..+++|+.|+|++|++. .+|.......      +++|+.|+|++|++ 
T Consensus       665 --~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-  740 (876)
T 4ecn_A          665 --CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKL-  740 (876)
T ss_dssp             --SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCC-
T ss_pred             --hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCC-
Confidence              0000012235566666666666677655 47788888888888887 6665543110      11333333333322 


Q ss_pred             CCCCCCCcceEEeccCcCCCCCchHHh--hcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCC
Q 047985          456 GFDQHPNTVNYLVSNNSLTGEIPSWIC--NLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLK  533 (930)
Q Consensus       456 ~~~~~~~l~~l~ls~n~l~g~ip~~~~--~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~  533 (930)
                                        + .+|..+.  .+ ++|+.|+|++|++++ +|..+..+++ |+.|+|++|+           
T Consensus       741 ------------------~-~lp~~l~~~~l-~~L~~L~Ls~N~L~~-lp~~l~~L~~-L~~L~Ls~N~-----------  787 (876)
T 4ecn_A          741 ------------------T-SLSDDFRATTL-PYLSNMDVSYNCFSS-FPTQPLNSSQ-LKAFGIRHQR-----------  787 (876)
T ss_dssp             ------------------C-CCCGGGSTTTC-TTCCEEECCSSCCSS-CCCGGGGCTT-CCEEECCCCB-----------
T ss_pred             ------------------c-cchHHhhhccC-CCcCEEEeCCCCCCc-cchhhhcCCC-CCEEECCCCC-----------
Confidence                              2 3444443  33 555555555555554 4555555553 5555554422           


Q ss_pred             CCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceE
Q 047985          534 GNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRI  613 (930)
Q Consensus       534 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  613 (930)
                             ++++|++.+.+|..|.++++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....+..+  +....+..
T Consensus       788 -------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~--~~~~~~~~  855 (876)
T 4ecn_A          788 -------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV--CPYIEAGM  855 (876)
T ss_dssp             -------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG--HHHHHTTC
T ss_pred             -------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc--cccccchh
Confidence                   1233566666666666666666666666666 45555543  466666666666655433222  22223334


Q ss_pred             EECCCCcC
Q 047985          614 IDLSKNRF  621 (930)
Q Consensus       614 LdLs~N~l  621 (930)
                      +.|++|+.
T Consensus       856 ~~L~~n~~  863 (876)
T 4ecn_A          856 YVLLYDKT  863 (876)
T ss_dssp             CEEECCTT
T ss_pred             eeecCCCc
Confidence            44444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-50  Score=498.22  Aligned_cols=520  Identities=22%  Similarity=0.256  Sum_probs=374.6

Q ss_pred             CCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCC-cccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEc
Q 047985          175 NLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRI-PSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDL  253 (930)
Q Consensus       175 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  253 (930)
                      +|++|++++|.+++..|..|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+.+..|.+|+++++|++|+|
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  104 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL  104 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred             CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence            3444444444555555666667777777777777554444 566777777777777777777777777777777777777


Q ss_pred             cCCCCCCCcchh--hcCCCCCCEEEccCCCCCCCCC-CCCCCCcCCcEEEccCCCCCCccCcccccc--cccceeecccc
Q 047985          254 LQNNLSGELPNS--IGNLASLEQVDLSLNRFLGKVP-SSLGNLTQLHWLSLASNDFSGELPASFGNL--RSLRTLDVYEC  328 (930)
Q Consensus       254 ~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n  328 (930)
                      ++|.+++.+|..  |+++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+  ++|+.|++++|
T Consensus       105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n  184 (844)
T 3j0a_A          105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN  184 (844)
T ss_dssp             TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred             cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence            777777655554  7777777777777777776544 457777788888888887777777777766  77888888888


Q ss_pred             cccCCCcccccCCCC------CCEEEccCCCCCCCCchhHHh-hccccccEEEccCCcccccccccCCCCccccceeeec
Q 047985          329 KFSGQIPSSLSNLTH------LSFLDFSLNNFSGKMDLDIFL-VNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLC  401 (930)
Q Consensus       329 ~l~~~~p~~l~~l~~------L~~L~Ls~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~  401 (930)
                      .+.+..|..++.+++      |+.|++++|.+++.++..... ....++..+.++.+.+..                .+.
T Consensus       185 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~----------------~~~  248 (844)
T 3j0a_A          185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA----------------GFG  248 (844)
T ss_dssp             BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC----------------SSS
T ss_pred             ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc----------------ccc
Confidence            877777766666555      888888888877766543321 123456667666442211                011


Q ss_pred             cCCCCCc-chhhhc--CCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCc
Q 047985          402 SCDLTEI-PKFLKN--QHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIP  478 (930)
Q Consensus       402 ~~~l~~i-p~~l~~--~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip  478 (930)
                      .+.+..+ +..+..  .++|+.|++++|.+.+..|..+.  .+++|+.|++++|+++                   +..|
T Consensus       249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~-------------------~~~~  307 (844)
T 3j0a_A          249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKIN-------------------KIAD  307 (844)
T ss_dssp             CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEEEEESCCCC-------------------EECT
T ss_pred             ccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--cCCCCCEEECCCCcCC-------------------CCCh
Confidence            1122211 122222  36788888888888776666655  5666666666555444                   4445


Q ss_pred             hHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCC
Q 047985          479 SWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANC  558 (930)
Q Consensus       479 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  558 (930)
                      ..+..+ ++|++|++++|.+++..|..+..++. |++|++++|++.+..+..+..+++|++|+|++|.+++.     ..+
T Consensus       308 ~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~  380 (844)
T 3j0a_A          308 EAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFI  380 (844)
T ss_dssp             TTTTTC-SSCCEEEEESCCCSCCCSCSCSSCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSC
T ss_pred             HHhcCC-CCCCEEECCCCCCCccCHHHhcCCCC-CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCC
Confidence            555666 78999999999998888888888885 99999999998877777788888999999999988753     237


Q ss_pred             CCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhccccee
Q 047985          559 SNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKV  638 (930)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~  638 (930)
                      ++|+.|++++|+++.. |..   ..+++.|++++|++.+... ......+++|+.|+|++|++++..+...+        
T Consensus       381 ~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------  447 (844)
T 3j0a_A          381 PSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDI-LYFLLRVPHLQILILNQNRFSSCSGDQTP--------  447 (844)
T ss_dssp             CSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTT-HHHHTTCTTCCEEEEESCCCCCCCSSSSS--------
T ss_pred             CCcchhccCCCCcccc-ccc---ccccceeecccCccccCch-hhhhhcCCccceeeCCCCccccccccccc--------
Confidence            8889999999988854 332   4678889999998887532 12234678899999999988754331100        


Q ss_pred             ccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEccccccc-----ccCchhcccccccceeeccC
Q 047985          639 VNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFD-----GEIPTSISNLKGLQILSLAD  713 (930)
Q Consensus       639 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----g~ip~~l~~l~~L~~L~Ls~  713 (930)
                                                            ...+.|+.|+|++|.++     +..|..|..+++|+.|+|++
T Consensus       448 --------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~  489 (844)
T 3j0a_A          448 --------------------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH  489 (844)
T ss_dssp             --------------------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred             --------------------------------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence                                                  01356899999999997     45567789999999999999


Q ss_pred             ccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCCCcCccCCcccCCCCCCCCCCC
Q 047985          714 NSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPL  793 (930)
Q Consensus       714 N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~~~~~~~~~s~~gn~~Lcg~~l  793 (930)
                      |++++.+|..|+++++|+.|||++|++++..|..+.  ++|++||+++|+|+|.+|..  |..+....+.|||..|.+++
T Consensus       490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence            999999999999999999999999999988777766  89999999999999999964  55666667889999998765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-47  Score=455.44  Aligned_cols=495  Identities=21%  Similarity=0.259  Sum_probs=277.0

Q ss_pred             CCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCC
Q 047985          120 SLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSS  199 (930)
Q Consensus       120 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  199 (930)
                      ++++|+|++|.+++..+..+.++++|++|++++|.+.       .-.+..+.++++|++|++++|.+++..|..|+++++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-------ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence            3444555555444444444444444444444444210       000112222333333333333344444455556666


Q ss_pred             CCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCC-chhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCC----CE
Q 047985          200 LTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD-ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL----EQ  274 (930)
Q Consensus       200 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~  274 (930)
                      |++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..++.+++|    +.
T Consensus       102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~  181 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence            6666666666654444345555566666666555554 245555555555555555555554444445444444    45


Q ss_pred             EEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCC
Q 047985          275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNF  354 (930)
Q Consensus       275 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  354 (930)
                      |++++|.+.+..|..+... +|+.|++++|....                       ..++..+..++.++.+.+....+
T Consensus       182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~-----------------------~~~~~~~~~l~~l~~~~l~~~~~  237 (570)
T 2z63_A          182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL-----------------------NVMKTCIQGLAGLEVHRLVLGEF  237 (570)
T ss_dssp             EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCT-----------------------THHHHHHHTTTTCEEEEEEEEEC
T ss_pred             cccCCCCceecCHHHhccC-cceeEecccccccc-----------------------cchhhhhcCccccceeeeccccc
Confidence            5555555554444444333 45555554443221                       11223333344444333322211


Q ss_pred             CCC-----CchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccC-CCC-CcchhhhcCCCcCEEeCCCCC
Q 047985          355 SGK-----MDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSC-DLT-EIPKFLKNQHHLELLDLASNK  427 (930)
Q Consensus       355 ~~~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~-~l~-~ip~~l~~~~~L~~L~Ls~N~  427 (930)
                      ...     ++...+ ..+..                       ..++.+++..+ .+. .+|..+..+++|+.|++++|.
T Consensus       238 ~~~~~l~~~~~~~~-~~l~~-----------------------l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  293 (570)
T 2z63_A          238 RNEGNLEKFDKSAL-EGLCN-----------------------LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT  293 (570)
T ss_dssp             CCCSSCEECCTTTT-GGGGG-----------------------SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE
T ss_pred             cCchhhhhcchhhh-ccccc-----------------------cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc
Confidence            110     000000 00110                       11222223222 111 334455555666666666665


Q ss_pred             CcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCccccc
Q 047985          428 INGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLG  507 (930)
Q Consensus       428 l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~  507 (930)
                      +. .+|.++.  .+ +                                            |+.|++++|.+. .+|.  .
T Consensus       294 l~-~l~~~~~--~~-~--------------------------------------------L~~L~l~~n~~~-~l~~--~  322 (570)
T 2z63_A          294 IE-RVKDFSY--NF-G--------------------------------------------WQHLELVNCKFG-QFPT--L  322 (570)
T ss_dssp             EC-SCCBCCS--CC-C--------------------------------------------CSEEEEESCBCS-SCCB--C
T ss_pred             ch-hhhhhhc--cC-C--------------------------------------------ccEEeeccCccc-ccCc--c
Confidence            54 3444433  22 3                                            444444444444 2222  1


Q ss_pred             ccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccC--CccccCCCCCcEecccCccccccCcccccCCCCC
Q 047985          508 NFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRI--PRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDL  585 (930)
Q Consensus       508 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  585 (930)
                      .++. |+.|++++|.+.+..+.  ..+++|++|++++|++++..  |..+.++++|++|++++|++++..+. +..+++|
T Consensus       323 ~l~~-L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L  398 (570)
T 2z63_A          323 KLKS-LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQL  398 (570)
T ss_dssp             BCSS-CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTC
T ss_pred             cccc-cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCC
Confidence            2332 55555555555444333  44555666666666665443  55666677777777777777665444 6677777


Q ss_pred             cEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeE
Q 047985          586 NVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLT  665 (930)
Q Consensus       586 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (930)
                      ++|++++|++.+..+.. .+..+++|++|++++|.+++..|.. +.                                  
T Consensus       399 ~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~----------------------------------  442 (570)
T 2z63_A          399 EHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGI-FN----------------------------------  442 (570)
T ss_dssp             CEEECTTSEEESCTTSC-TTTTCTTCCEEECTTSCCEECCTTT-TT----------------------------------
T ss_pred             CEEEccCCccccccchh-hhhcCCCCCEEeCcCCcccccchhh-hh----------------------------------
Confidence            77777777776654421 2256777888888888777655422 11                                  


Q ss_pred             eeecccccccccccccccEEEccccccc-ccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccC
Q 047985          666 MSNKGQMMSYKKIPDILTAVILSSNRFD-GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQI  744 (930)
Q Consensus       666 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~i  744 (930)
                                  .++.|+.|+|++|.++ +.+|..++.+++|+.|+|++|++++.+|..|+++++|+.|+|++|++++.+
T Consensus       443 ------------~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  510 (570)
T 2z63_A          443 ------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP  510 (570)
T ss_dssp             ------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ------------cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence                        1345788888888887 678899999999999999999999999999999999999999999999998


Q ss_pred             CccccCCCCCCeeecCCCcccccCCCCC
Q 047985          745 PQQLVELTFLEFFNVSDNHFTGPIPQGK  772 (930)
Q Consensus       745 p~~l~~L~~L~~L~ls~N~L~g~iP~~~  772 (930)
                      |..+..+++|+.|++++|+++|.+|...
T Consensus       511 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          511 DGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             HHHhhcccCCcEEEecCCcccCCCcchH
Confidence            8889999999999999999999998653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.6e-46  Score=445.76  Aligned_cols=501  Identities=20%  Similarity=0.212  Sum_probs=307.5

Q ss_pred             CCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCcc
Q 047985           55 CCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQ  134 (930)
Q Consensus        55 ~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~  134 (930)
                      .|.|.|+ |+.          +++.++ .++.  .+  .++|++|+|++|.+++. .|..++++++|++|+|++|.+++.
T Consensus         3 ~C~~~~~-c~~----------~~~~l~-~ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~   65 (549)
T 2z81_A            3 SCDASGV-CDG----------RSRSFT-SIPS--GL--TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI   65 (549)
T ss_dssp             EECTTSE-EEC----------TTSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred             cCCCCce-EEC----------CCCccc-cccc--cC--CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence            4999999 854          344444 2333  33  27899999999998865 567789999999999999999988


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCC-CCchhccCCCCCCEEEccCCCCCCC
Q 047985          135 IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISS-PIPHNLTYLSSLTTLSLSGCDLRGR  213 (930)
Q Consensus       135 ~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~  213 (930)
                      .|..++++++|++|++++|.+.       ...+..+.++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.
T Consensus        66 ~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~  138 (549)
T 2z81_A           66 EGDAFYSLGSLEHLDLSDNHLS-------SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE  138 (549)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCC-------SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             ChhhccccccCCEEECCCCccC-------ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc
Confidence            8888889999999999988542       2234456777777777777777765 3456677777777777777764333


Q ss_pred             Cc-ccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchh-hcCCCCCCEEEccCCCCCCCC--C-C
Q 047985          214 IP-SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNS-IGNLASLEQVDLSLNRFLGKV--P-S  288 (930)
Q Consensus       214 ~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~--p-~  288 (930)
                      +| ..+.++++|++|++++|.+++..|..++.+++|++|+++.|.+. .+|.. +..+++|++|++++|++++..  | .
T Consensus       139 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  217 (549)
T 2z81_A          139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLP  217 (549)
T ss_dssp             ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred             cCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccc
Confidence            33 46677777777777777777666777777777777777777665 33433 345667777777777666531  1 1


Q ss_pred             CCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccc
Q 047985          289 SLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHK  368 (930)
Q Consensus       289 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  368 (930)
                      ....+++|+.|++++|.+++..+..                    ++..+..+++|+.+++++|.+.+.......     
T Consensus       218 ~~~~~~~L~~L~l~~n~l~~~~~~~--------------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-----  272 (549)
T 2z81_A          218 VDEVSSPMKKLAFRGSVLTDESFNE--------------------LLKLLRYILELSEVEFDDCTLNGLGDFNPS-----  272 (549)
T ss_dssp             SCCCCCCCCEEEEESCEEEHHHHHH--------------------HHGGGGGCTTCCEEEEESCEEECCSCCCCC-----
T ss_pred             hhhhhhcccceeccccccchhHHHH--------------------HHHHhhhhcccccccccccccccccccccc-----
Confidence            1223445555555555544322211                    112233445555555555554432110000     


Q ss_pred             cccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEe
Q 047985          369 LLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLN  448 (930)
Q Consensus       369 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~  448 (930)
                                                             ....+..+++|+.|++.++.+...    ..   .       
T Consensus       273 ---------------------------------------~~~~~~~l~~L~~L~l~~~~i~~~----~~---~-------  299 (549)
T 2z81_A          273 ---------------------------------------ESDVVSELGKVETVTIRRLHIPQF----YL---F-------  299 (549)
T ss_dssp             ---------------------------------------TTTCCCCCTTCCEEEEESCBCSCG----GG---S-------
T ss_pred             ---------------------------------------chhhhhhhcccccccccccccchh----hh---c-------
Confidence                                                   000112334555555555543211    00   0       


Q ss_pred             ccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccc-cccccCCceeecCCCcccccc
Q 047985          449 LSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCL-GNFSDWLSILDLQHNKFSGTI  527 (930)
Q Consensus       449 Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l-~~~~~~L~~L~Ls~N~l~~~~  527 (930)
                                                ..++...... .+|+.|++++|.+. .+|..+ ..+++ |++|++++|++++.+
T Consensus       300 --------------------------~~l~~~~~~~-~~L~~L~l~~n~l~-~ip~~~~~~l~~-L~~L~Ls~N~l~~~~  350 (549)
T 2z81_A          300 --------------------------YDLSTVYSLL-EKVKRITVENSKVF-LVPCSFSQHLKS-LEFLDLSENLMVEEY  350 (549)
T ss_dssp             --------------------------CCCCHHHHHS-TTCCEEEEESSCCC-CCCHHHHHHCTT-CCEEECCSSCCCHHH
T ss_pred             --------------------------ccchhhhhhc-ccceEEEeccCccc-cCCHHHHhcCcc-ccEEEccCCcccccc
Confidence                                      0111111111 44555555555554 344333 23443 666666666665544


Q ss_pred             C---cccCCCCCccEEEccCccccccCC--ccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCC
Q 047985          528 P---DNLLKGNILKVIDLSDNLLQGRIP--RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREP  602 (930)
Q Consensus       528 p---~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  602 (930)
                      |   ..+..+++|++|++++|++++..+  ..+..+++|++|++++|+++. +|..+..+++|++|+|++|++++.. ..
T Consensus       351 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~-~~  428 (549)
T 2z81_A          351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVK-TC  428 (549)
T ss_dssp             HHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCC-TT
T ss_pred             ccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCccccc-ch
Confidence            3   235556677777777777765432  457778888888888888874 5777788888888888888876432 11


Q ss_pred             CccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccc
Q 047985          603 KTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDIL  682 (930)
Q Consensus       603 ~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  682 (930)
                          ..++|++||++                                                                 
T Consensus       429 ----~~~~L~~L~Ls-----------------------------------------------------------------  439 (549)
T 2z81_A          429 ----IPQTLEVLDVS-----------------------------------------------------------------  439 (549)
T ss_dssp             ----SCTTCSEEECC-----------------------------------------------------------------
T ss_pred             ----hcCCceEEECC-----------------------------------------------------------------
Confidence                12344444444                                                                 


Q ss_pred             cEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCC
Q 047985          683 TAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDN  762 (930)
Q Consensus       683 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N  762 (930)
                            +|++++.+    +.+++|+.|+|++|+++ .||. .+.+++|++|||++|++++.+|..+..+++|++|++++|
T Consensus       440 ------~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          440 ------NNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             ------SSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred             ------CCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence                  44444332    34567777777777776 5665 466777888888888888777777777888888888888


Q ss_pred             cccccCCC
Q 047985          763 HFTGPIPQ  770 (930)
Q Consensus       763 ~L~g~iP~  770 (930)
                      ++.|.+|.
T Consensus       508 ~~~~~~~~  515 (549)
T 2z81_A          508 PWDCSCPR  515 (549)
T ss_dssp             CBCCCHHH
T ss_pred             CccCCCcc
Confidence            88777763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9.6e-47  Score=447.55  Aligned_cols=490  Identities=20%  Similarity=0.238  Sum_probs=295.3

Q ss_pred             CEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCC
Q 047985           97 EWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL  176 (930)
Q Consensus        97 ~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L  176 (930)
                      .+.|++++.++.  +|..+.  ++|++|+|++|.+++..|..++++++|++|++++|.                      
T Consensus         8 ~~c~~~~~~l~~--ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----------------------   61 (549)
T 2z81_A            8 GVCDGRSRSFTS--IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR----------------------   61 (549)
T ss_dssp             SEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC----------------------
T ss_pred             ceEECCCCcccc--ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCC----------------------
Confidence            345666666653  555443  667777777777776666666666666666666663                      


Q ss_pred             CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCC-chhhhhcCCCCCCEEEccC
Q 047985          177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD-ELPTFIGTLGSLKELDLLQ  255 (930)
Q Consensus       177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~  255 (930)
                               +++..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++ ..|..++++++|++|++++
T Consensus        62 ---------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~  132 (549)
T 2z81_A           62 ---------INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN  132 (549)
T ss_dssp             ---------CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred             ---------cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC
Confidence                     223333444444555555555555544444444555555555555555443 1333444555555555555


Q ss_pred             CCCCCCcc-hhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCC
Q 047985          256 NNLSGELP-NSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI  334 (930)
Q Consensus       256 n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  334 (930)
                      |.+.+.+| ..|+++++|++|++++|++++..|..+..+++|++|+++.|.+.......+..+++|++|++++|++++..
T Consensus       133 n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  212 (549)
T 2z81_A          133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ  212 (549)
T ss_dssp             SSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCC
T ss_pred             CccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccc
Confidence            54333332 34555555555555555555555555555555555555555543221112233455555555555554421


Q ss_pred             --c-ccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchh
Q 047985          335 --P-SSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF  411 (930)
Q Consensus       335 --p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~  411 (930)
                        | .....+++|+.|++++|.+++..+.                                              .++..
T Consensus       213 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----------------------------------------------~l~~~  246 (549)
T 2z81_A          213 FSPLPVDEVSSPMKKLAFRGSVLTDESFN----------------------------------------------ELLKL  246 (549)
T ss_dssp             CCCCSSCCCCCCCCEEEEESCEEEHHHHH----------------------------------------------HHHGG
T ss_pred             ccccchhhhhhcccceeccccccchhHHH----------------------------------------------HHHHH
Confidence              1 1112344455555544444322111                                              12233


Q ss_pred             hhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhccccccee
Q 047985          412 LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESL  491 (930)
Q Consensus       412 l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L  491 (930)
                      +..+++|+.+++++|.+.+.......  .             .                        ..+..+ .+|+.|
T Consensus       247 ~~~~~~L~~l~l~~~~~~~~~~~~~~--~-------------~------------------------~~~~~l-~~L~~L  286 (549)
T 2z81_A          247 LRYILELSEVEFDDCTLNGLGDFNPS--E-------------S------------------------DVVSEL-GKVETV  286 (549)
T ss_dssp             GGGCTTCCEEEEESCEEECCSCCCCC--T-------------T------------------------TCCCCC-TTCCEE
T ss_pred             hhhhcccccccccccccccccccccc--c-------------h------------------------hhhhhh-cccccc
Confidence            44566677777777766542110000  0             0                        000111 445555


Q ss_pred             ecccccccCc-----CcccccccccCCceeecCCCccccccCccc-CCCCCccEEEccCccccccCCc---cccCCCCCc
Q 047985          492 DLSYNNLSGL-----LPQCLGNFSDWLSILDLQHNKFSGTIPDNL-LKGNILKVIDLSDNLLQGRIPR---SLANCSNLE  562 (930)
Q Consensus       492 ~Ls~N~l~~~-----~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~  562 (930)
                      ++.++.+...     ++..+.... .|+.|++++|++. .+|..+ ..+++|++|++++|++++.+|.   .+..+++|+
T Consensus       287 ~l~~~~i~~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~  364 (549)
T 2z81_A          287 TIRRLHIPQFYLFYDLSTVYSLLE-KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ  364 (549)
T ss_dssp             EEESCBCSCGGGSCCCCHHHHHST-TCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred             cccccccchhhhcccchhhhhhcc-cceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence            5555544321     122223334 4999999999997 777766 4789999999999999987753   478899999


Q ss_pred             EecccCccccccCc--ccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecc
Q 047985          563 FLDLGDNQIRDIFP--SWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVN  640 (930)
Q Consensus       563 ~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~  640 (930)
                      +|++++|++++..+  ..+..+++|++|+|++|++++ +|..+  ..+++|++|++++|.++                  
T Consensus       365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~--~~~~~L~~L~Ls~N~l~------------------  423 (549)
T 2z81_A          365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSC--QWPEKMRFLNLSSTGIR------------------  423 (549)
T ss_dssp             EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCC--CCCTTCCEEECTTSCCS------------------
T ss_pred             EEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhh--cccccccEEECCCCCcc------------------
Confidence            99999999998754  568899999999999999985 34333  45666777777777654                  


Q ss_pred             ccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccC
Q 047985          641 ASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHI  720 (930)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  720 (930)
                                                                            .+|..+  .++|+.|+|++|++++.+
T Consensus       424 ------------------------------------------------------~l~~~~--~~~L~~L~Ls~N~l~~~~  447 (549)
T 2z81_A          424 ------------------------------------------------------VVKTCI--PQTLEVLDVSNNNLDSFS  447 (549)
T ss_dssp             ------------------------------------------------------CCCTTS--CTTCSEEECCSSCCSCCC
T ss_pred             ------------------------------------------------------cccchh--cCCceEEECCCCChhhhc
Confidence                                                                  122222  157999999999999753


Q ss_pred             cccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCC-CCcCccCCcccCCCCCCCCCC
Q 047985          721 PSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG-KQFATFDKTSFDGNSGLCGRP  792 (930)
Q Consensus       721 p~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~-~~~~~~~~~s~~gn~~Lcg~~  792 (930)
                          +.+++|+.|||++|+++ .||. ...+++|++||+++|++++.+|.. ..+.........||+..|.+|
T Consensus       448 ----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          448 ----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             ----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence                57899999999999999 7887 478999999999999999988753 344445555677887776543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.7e-46  Score=444.69  Aligned_cols=491  Identities=20%  Similarity=0.230  Sum_probs=332.9

Q ss_pred             EEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCC
Q 047985          179 LVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNL  258 (930)
Q Consensus       179 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  258 (930)
                      |++++|.+++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+
T Consensus        33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  112 (570)
T 2z63_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  112 (570)
T ss_dssp             EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence            33333344444444555556666666666655555555555666666666666666555555566666666666666665


Q ss_pred             CCCcchhhcCCCCCCEEEccCCCCCC-CCCCCCCCCcCCcEEEccCCCCCCccCccccccccc----ceeecccccccCC
Q 047985          259 SGELPNSIGNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSL----RTLDVYECKFSGQ  333 (930)
Q Consensus       259 ~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~  333 (930)
                      ++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..++.+++|    ++|++++|.+.+.
T Consensus       113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~  192 (570)
T 2z63_A          113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  192 (570)
T ss_dssp             CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred             ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceec
Confidence            54433345566666666666666554 345556666666666666666665555555555555    5666666666655


Q ss_pred             CcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhh
Q 047985          334 IPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLK  413 (930)
Q Consensus       334 ~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~  413 (930)
                      .|..+..+ +|+.|++++|.....                                                 .++..+.
T Consensus       193 ~~~~~~~~-~L~~L~l~~n~~~~~-------------------------------------------------~~~~~~~  222 (570)
T 2z63_A          193 QPGAFKEI-RLHKLTLRNNFDSLN-------------------------------------------------VMKTCIQ  222 (570)
T ss_dssp             CTTTTTTC-EEEEEEEESCCSCTT-------------------------------------------------HHHHHHH
T ss_pred             CHHHhccC-cceeEeccccccccc-------------------------------------------------chhhhhc
Confidence            55444433 566666655533221                                                 1122222


Q ss_pred             cCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccC-cCCCCCchHHhhcccccceee
Q 047985          414 NQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNN-SLTGEIPSWICNLSNRLESLD  492 (930)
Q Consensus       414 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n-~l~g~ip~~~~~~~~~L~~L~  492 (930)
                      .++.++.+++....+..          ...++  .+....+.+.... .++.++++.+ .+.+.+|..+..+ ++|+.|+
T Consensus       223 ~l~~l~~~~l~~~~~~~----------~~~l~--~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~  288 (570)
T 2z63_A          223 GLAGLEVHRLVLGEFRN----------EGNLE--KFDKSALEGLCNL-TIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFS  288 (570)
T ss_dssp             TTTTCEEEEEEEEECCC----------CSSCE--ECCTTTTGGGGGS-EEEEEEEEETTEEESCSTTTTGGG-TTCSEEE
T ss_pred             CccccceeeeccccccC----------chhhh--hcchhhhcccccc-chhhhhhhcchhhhhhchhhhcCc-CcccEEE
Confidence            33333332222111110          00000  0000111111000 1334455555 5666778878777 8999999


Q ss_pred             cccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCcccc
Q 047985          493 LSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR  572 (930)
Q Consensus       493 Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  572 (930)
                      +++|.++ .+|..+..+ . |++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|+++
T Consensus       289 l~~~~l~-~l~~~~~~~-~-L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~  360 (570)
T 2z63_A          289 LVSVTIE-RVKDFSYNF-G-WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLS  360 (570)
T ss_dssp             EESCEEC-SCCBCCSCC-C-CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCB
T ss_pred             ecCccch-hhhhhhccC-C-ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccC
Confidence            9999998 578888877 5 999999999998 6665  4678999999999999887765  78999999999999999


Q ss_pred             ccC--cccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccccccccc
Q 047985          573 DIF--PSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEV  650 (930)
Q Consensus       573 ~~~--p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~  650 (930)
                      +..  |..+..+++|++|++++|++.+..+.   +..+++|+.|++++|.+++..|...+..                  
T Consensus       361 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------  419 (570)
T 2z63_A          361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLS------------------  419 (570)
T ss_dssp             EEEEEEHHHHTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSEEESCTTSCTTTT------------------
T ss_pred             ccccccccccccCccCEEECCCCcccccccc---ccccCCCCEEEccCCccccccchhhhhc------------------
Confidence            875  78889999999999999999987554   3678999999999999987655322211                  


Q ss_pred             ccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCcccc-ccCcccccccCC
Q 047985          651 IPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLH-GHIPSCLGNLTD  729 (930)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~  729 (930)
                                                  .+.|+.|++++|.+++.+|..++.+++|+.|+|++|.++ +.+|..++.+++
T Consensus       420 ----------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          420 ----------------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             ----------------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ----------------------------CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence                                        355899999999999999999999999999999999998 689999999999


Q ss_pred             CCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCC-CCcCccCCcccCCCCCCCC
Q 047985          730 LESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG-KQFATFDKTSFDGNSGLCG  790 (930)
Q Consensus       730 L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~-~~~~~~~~~s~~gn~~Lcg  790 (930)
                      |+.|||++|++++.+|..+..+++|++|++++|++++.+|.. ..+.......+.+|+.-|.
T Consensus       472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            999999999999999999999999999999999999877753 2334444445566655443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=9.6e-47  Score=453.19  Aligned_cols=361  Identities=22%  Similarity=0.327  Sum_probs=231.2

Q ss_pred             CCCCCCCCCCCCCCcCCcEEEccCCCCCCc-----------------cCcccc--cccccceeecccccccCCCcccccC
Q 047985          280 NRFLGKVPSSLGNLTQLHWLSLASNDFSGE-----------------LPASFG--NLRSLRTLDVYECKFSGQIPSSLSN  340 (930)
Q Consensus       280 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~  340 (930)
                      |++++ +|..++++++|++|+|++|.+++.                 +|..++  ++++|++|++++|++.+.+|..+++
T Consensus       193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            44444 455555555555555555555543                 555555  6666666666666666666666666


Q ss_pred             CCCCCEEEccCCC-CCC-CCchhHHh----hccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcch--hh
Q 047985          341 LTHLSFLDFSLNN-FSG-KMDLDIFL----VNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK--FL  412 (930)
Q Consensus       341 l~~L~~L~Ls~n~-l~~-~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~--~l  412 (930)
                      +++|++|++++|+ ++| .+|.....    ..+++|++|++++                         |.++.+|.  .+
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-------------------------n~l~~ip~~~~l  326 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-------------------------NNLKTFPVETSL  326 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-------------------------SCCSSCCCHHHH
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-------------------------CcCCccCchhhh
Confidence            6666666666665 555 44432210    0112222222222                         22233444  55


Q ss_pred             hcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceee
Q 047985          413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLD  492 (930)
Q Consensus       413 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~  492 (930)
                      +.+++|++|++++|++.|.+| .+.                                             .+ ++|++|+
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip-~~~---------------------------------------------~l-~~L~~L~  359 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLP-AFG---------------------------------------------SE-IKLASLN  359 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECC-CCE---------------------------------------------EE-EEESEEE
T ss_pred             ccCCCCCEEeCcCCcCccchh-hhC---------------------------------------------CC-CCCCEEE
Confidence            566666666666666665555 322                                             22 4555566


Q ss_pred             cccccccCcCcccccccccCCceeecCCCccccccCcccCCCC--CccEEEccCccccccCCcccc-------CCCCCcE
Q 047985          493 LSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGN--ILKVIDLSDNLLQGRIPRSLA-------NCSNLEF  563 (930)
Q Consensus       493 Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~  563 (930)
                      +++|+++ .+|..+..++..|++|++++|.++ .+|..+....  +|++|++++|++++.+|..|.       .+++|++
T Consensus       360 L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~  437 (636)
T 4eco_A          360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS  437 (636)
T ss_dssp             CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred             CCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence            6666555 555555555522666666666666 5555554433  566667777766666666666       6667777


Q ss_pred             ecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCcc------CCCCCceEEECCCCcCcccCChHHHhhcccce
Q 047985          564 LDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTD------CGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMK  637 (930)
Q Consensus       564 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~------~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~  637 (930)
                      |++++|+++...+..+..+++|++|+|++|+++. +|.....      ..+++|+.|+|++|+++ .+|...+.      
T Consensus       438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------  509 (636)
T 4eco_A          438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA------  509 (636)
T ss_dssp             EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST------
T ss_pred             EECcCCccCcCCHHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh------
Confidence            7777777775544455567777777777777773 3332211      12238899999999988 67743210      


Q ss_pred             eccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeec------
Q 047985          638 VVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSL------  711 (930)
Q Consensus       638 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L------  711 (930)
                                                             ..++.|+.|+|++|++++ +|..++++++|+.|+|      
T Consensus       510 ---------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l  549 (636)
T 4eco_A          510 ---------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA  549 (636)
T ss_dssp             ---------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred             ---------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc
Confidence                                                   013458899999999997 8999999999999999      


Q ss_pred             cCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccc
Q 047985          712 ADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTG  766 (930)
Q Consensus       712 s~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g  766 (930)
                      ++|++.+.+|..++++++|+.|||++|++ +.+|..+.  ++|++||+++|++..
T Consensus       550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          550 QGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             ccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            56889999999999999999999999999 78998876  799999999998763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.3e-45  Score=447.90  Aligned_cols=74  Identities=18%  Similarity=0.185  Sum_probs=49.6

Q ss_pred             ccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcc
Q 047985          688 SSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHF  764 (930)
Q Consensus       688 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L  764 (930)
                      ++|++.+.+|..|+++++|+.|+|++|++ +.||..+.  ++|+.|||++|++...-+..+.....+..+.+++|++
T Consensus       790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence            34566667777777777777777777777 57777665  5777777777777665555555544555555666544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-44  Score=426.12  Aligned_cols=456  Identities=20%  Similarity=0.236  Sum_probs=284.0

Q ss_pred             EEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCC
Q 047985          178 ELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN  257 (930)
Q Consensus       178 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  257 (930)
                      +|++++|.++. +|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|+|++|.
T Consensus         4 ~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            4 LVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             EEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             eEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            45555555542 333333  455555555555554444445555555555555555554444455555555555555555


Q ss_pred             CCCCcchhhcCCCCCCEEEccCCCCCC-CCCCCCCCCcCCcEEEccCCCCCCccCccccccccc--ceeecccccc--cC
Q 047985          258 LSGELPNSIGNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSL--RTLDVYECKF--SG  332 (930)
Q Consensus       258 l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~  332 (930)
                      ++ .+|..  .+++|++|+|++|++++ .+|..|+++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+
T Consensus        81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~  154 (520)
T 2z7x_B           81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK  154 (520)
T ss_dssp             CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred             ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence            44 33333  44455555555554444 234444444444455544444443   123333333  4444444444  33


Q ss_pred             CCcccccCCC-CCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchh
Q 047985          333 QIPSSLSNLT-HLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF  411 (930)
Q Consensus       333 ~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~  411 (930)
                      ..|..+..+. ....+++++|.+.+.++                                                 +..
T Consensus       155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~-------------------------------------------------~~~  185 (520)
T 2z7x_B          155 EDPEGLQDFNTESLHIVFPTNKEFHFIL-------------------------------------------------DVS  185 (520)
T ss_dssp             CCTTTTTTCCEEEEEEECCSSSCCCCCC-------------------------------------------------CCC
T ss_pred             cccccccccccceEEEEeccCcchhhhh-------------------------------------------------hhh
Confidence            3333333222 11122222222221111                                                 112


Q ss_pred             hhcCCCcCEEeCCCCC-------CcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhh-
Q 047985          412 LKNQHHLELLDLASNK-------INGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICN-  483 (930)
Q Consensus       412 l~~~~~L~~L~Ls~N~-------l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~-  483 (930)
                      +..+++|+.+++++|.       +.+.+| .+.  .+++|+.|+++                   +|.+++..+..+.. 
T Consensus       186 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~--~l~~L~~L~l~-------------------~~~l~~~~~~~~~~~  243 (520)
T 2z7x_B          186 VKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ--TNPKLSNLTLN-------------------NIETTWNSFIRILQL  243 (520)
T ss_dssp             CTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG--GCTTCCEEEEE-------------------EEEEEHHHHHHHHHH
T ss_pred             hhcccceeeccccccccccccceeecchh-hhc--cccchhhcccc-------------------ccccCHHHHHHHHHH
Confidence            3445566666666665       333333 222  34455555544                   44444433322221 


Q ss_pred             --cccccceeecccccccCcCcccc-----cccccCCceeecCCCccccccC-cccCCC---CCccEEEccCccccccCC
Q 047985          484 --LSNRLESLDLSYNNLSGLLPQCL-----GNFSDWLSILDLQHNKFSGTIP-DNLLKG---NILKVIDLSDNLLQGRIP  552 (930)
Q Consensus       484 --~~~~L~~L~Ls~N~l~~~~p~~l-----~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~p  552 (930)
                        . ++|++|++++|+++|.+|..+     ..+.. |+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+.. 
T Consensus       244 ~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~-L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-  318 (520)
T 2z7x_B          244 VWH-TTVWYFSISNVKLQGQLDFRDFDYSGTSLKA-LSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-  318 (520)
T ss_dssp             HHT-SSCSEEEEEEEEEESCCCCCCCCCCSCCCCE-EEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred             hhh-CcccEEEeecccccCccccchhhcccccCce-eEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-
Confidence              2 578999999999988888887     77775 88999998888  555 334333   56899999999886542 


Q ss_pred             ccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhh
Q 047985          553 RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC  632 (930)
Q Consensus       553 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~  632 (930)
                       .+..+++|++|++++|++++.+|.++..+++|++|+|++|++++....+..+..+++|++||+++|.+++.+|...+. 
T Consensus       319 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~-  396 (520)
T 2z7x_B          319 -CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS-  396 (520)
T ss_dssp             -CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC-
T ss_pred             -chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc-
Confidence             126788899999999999998888899999999999999998863211122367889999999999998767643111 


Q ss_pred             cccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeecc
Q 047985          633 WNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLA  712 (930)
Q Consensus       633 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls  712 (930)
                                                                   .++.|+.|++++|++++.+|..+.  ++|+.|+|+
T Consensus       397 ---------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls  429 (520)
T 2z7x_B          397 ---------------------------------------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH  429 (520)
T ss_dssp             ---------------------------------------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred             ---------------------------------------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence                                                         134588999999999988888775  789999999


Q ss_pred             CccccccCcccccccCCCCeeeCCCCcCcccCCcc-ccCCCCCCeeecCCCcccccCC
Q 047985          713 DNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQ-LVELTFLEFFNVSDNHFTGPIP  769 (930)
Q Consensus       713 ~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~-l~~L~~L~~L~ls~N~L~g~iP  769 (930)
                      +|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus       430 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          430 SNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             SSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            99998 88988889999999999999999 56665 8899999999999999998665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-44  Score=425.79  Aligned_cols=463  Identities=21%  Similarity=0.195  Sum_probs=369.7

Q ss_pred             cEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCc
Q 047985          146 AYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLI  225 (930)
Q Consensus       146 ~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  225 (930)
                      ++||+++|.+.        .+|..+.  ++|++|++++|.+++..|..+.++++|++|++++|++++..|..|+++++|+
T Consensus         3 ~~l~ls~n~l~--------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~   72 (520)
T 2z7x_B            3 FLVDRSKNGLI--------HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE   72 (520)
T ss_dssp             CEEECTTSCCS--------SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred             ceEecCCCCcc--------ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence            57999999652        3444333  8999999999999999999999999999999999999988899999999999


Q ss_pred             EEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCC-CcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCC--cEEEcc
Q 047985          226 HLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG-ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL--HWLSLA  302 (930)
Q Consensus       226 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~Ls  302 (930)
                      +|++++|.++ .+|..  .+++|++|++++|.+++ .+|..|+++++|++|++++|++++   ..+..+++|  ++|+++
T Consensus        73 ~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~  146 (520)
T 2z7x_B           73 YLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV  146 (520)
T ss_dssp             EEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred             EEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence            9999999998 45655  89999999999999997 578999999999999999999986   357777888  999999


Q ss_pred             CCCC--CCccCccccccc-ccceeecccccccCCCcc-cccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCC
Q 047985          303 SNDF--SGELPASFGNLR-SLRTLDVYECKFSGQIPS-SLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTN  378 (930)
Q Consensus       303 ~N~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n  378 (930)
                      +|.+  .+..|..+..+. +...+++++|.+.+.++. .+..+++|+.|++++|.-......  +               
T Consensus       147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~---------------  209 (520)
T 2z7x_B          147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY--F---------------  209 (520)
T ss_dssp             ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH--H---------------
T ss_pred             cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce--e---------------
Confidence            9999  888888888766 455678889988876654 566788888888887752111100  0               


Q ss_pred             cccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccC-CCCCCceEEeccCccCcCC
Q 047985          379 RLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLD-PSMQNFGHLNLSHNFLTGF  457 (930)
Q Consensus       379 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~~L~~L~Ls~N~l~~~  457 (930)
                                                 ......+..+++|+.|++++|.+.+..+..+.. ...++|++|          
T Consensus       210 ---------------------------~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L----------  252 (520)
T 2z7x_B          210 ---------------------------LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF----------  252 (520)
T ss_dssp             ---------------------------HHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE----------
T ss_pred             ---------------------------ecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE----------
Confidence                                       001124678899999999999887543322110 012345555          


Q ss_pred             CCCCCcceEEeccCcCCCCCchHH-----hhcccccceeecccccccCcCc-cccccc---ccCCceeecCCCccccccC
Q 047985          458 DQHPNTVNYLVSNNSLTGEIPSWI-----CNLSNRLESLDLSYNNLSGLLP-QCLGNF---SDWLSILDLQHNKFSGTIP  528 (930)
Q Consensus       458 ~~~~~l~~l~ls~n~l~g~ip~~~-----~~~~~~L~~L~Ls~N~l~~~~p-~~l~~~---~~~L~~L~Ls~N~l~~~~p  528 (930)
                               ++++|+++|.+|..+     ..+ ++|+.+++++|.+  .+| ..+..+   . .|+.|++++|.+.+.. 
T Consensus       253 ---------~l~~n~l~~~~p~~~~~~~~~~l-~~L~~l~l~~n~~--~~p~~~~~~~~~~~-~L~~L~l~~n~l~~~~-  318 (520)
T 2z7x_B          253 ---------SISNVKLQGQLDFRDFDYSGTSL-KALSIHQVVSDVF--GFPQSYIYEIFSNM-NIKNFTVSGTRMVHML-  318 (520)
T ss_dssp             ---------EEEEEEEESCCCCCCCCCCSCCC-CEEEEEEEEECCC--CSCTHHHHHHHHTC-CCSEEEEESSCCCCCC-
T ss_pred             ---------EeecccccCccccchhhcccccC-ceeEeccccccce--ecchhhhhcccccC-ceeEEEcCCCcccccc-
Confidence                     455555556677666     555 7899999999998  455 344433   3 3999999999886432 


Q ss_pred             cccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccc--cCcccccCCCCCcEEEccCCcccccCCCCCccC
Q 047985          529 DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD--IFPSWLGTLPDLNVLILKSNKFHGLIREPKTDC  606 (930)
Q Consensus       529 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~  606 (930)
                       ....+++|++|++++|++++.+|..+..+++|++|++++|++++  .+|..+..+++|++|+|++|++.+.+|... +.
T Consensus       319 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-~~  396 (520)
T 2z7x_B          319 -CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-CS  396 (520)
T ss_dssp             -CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-CC
T ss_pred             -chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-hc
Confidence             12577899999999999999899999999999999999999997  567889999999999999999998555432 25


Q ss_pred             CCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEE
Q 047985          607 GFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVI  686 (930)
Q Consensus       607 ~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  686 (930)
                      .+++|+.|++++|++++.+|..                                                 +++.|+.||
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~-------------------------------------------------l~~~L~~L~  427 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRC-------------------------------------------------LPPRIKVLD  427 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGS-------------------------------------------------CCTTCCEEE
T ss_pred             cCccCCEEECcCCCCCcchhhh-------------------------------------------------hcccCCEEE
Confidence            6899999999999998766532                                                 124589999


Q ss_pred             cccccccccCchhcccccccceeeccCccccccCccc-ccccCCCCeeeCCCCcCcccCC
Q 047985          687 LSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSC-LGNLTDLESLDLSNNRFSGQIP  745 (930)
Q Consensus       687 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~lsg~ip  745 (930)
                      |++|+++ .+|..+..+++|+.|+|++|+++ .+|.. ++.+++|+.|+|++|++++..+
T Consensus       428 Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          428 LHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            9999999 89998999999999999999999 56665 9999999999999999998765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.8e-42  Score=416.61  Aligned_cols=515  Identities=23%  Similarity=0.237  Sum_probs=317.7

Q ss_pred             CCCcEEEccCCCCCCCccccCCchh-hhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCC
Q 047985          143 SKLAYLDLSHNSYYDPVELRKPSLG-NLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNI  221 (930)
Q Consensus       143 ~~L~~L~Ls~n~~~~~~~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  221 (930)
                      +++++|||++|.+        ..++ ..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++
T Consensus        52 ~~~~~LdLs~N~i--------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L  123 (635)
T 4g8a_A           52 FSTKNLDLSFNPL--------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL  123 (635)
T ss_dssp             TTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred             cCCCEEEeeCCCC--------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence            3678888888854        2222 346667777777777777666666666667777777777776665555566666


Q ss_pred             CCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCC-CcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCc---
Q 047985          222 TRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG-ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLH---  297 (930)
Q Consensus       222 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~---  297 (930)
                      ++|++|++++|++++..+..|+++++|++|++++|.+++ .+|..++.+++|++|++++|++++..+..+..+.+++   
T Consensus       124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~  203 (635)
T 4g8a_A          124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  203 (635)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred             CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence            677777777776666655566666666666666666654 3456666666666666666666666555555544332   


Q ss_pred             -EEEccCCCCCCccCcccccccccceeecccccccCC-CcccccCCCCCCEEEccCCCCCCCCchh----HHhhcccccc
Q 047985          298 -WLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQ-IPSSLSNLTHLSFLDFSLNNFSGKMDLD----IFLVNHKLLY  371 (930)
Q Consensus       298 -~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~----~~~~~~~~L~  371 (930)
                       .++++.|.+....+..+. ...++.+++.+|..... .+..+..+..++...+..+.........    ..+.....+.
T Consensus       204 ~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~  282 (635)
T 4g8a_A          204 LSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT  282 (635)
T ss_dssp             CEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred             hhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence             456666666543333332 33455555555543322 1223444555554444332221110000    0001111121


Q ss_pred             EEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccC
Q 047985          372 HLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSH  451 (930)
Q Consensus       372 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~  451 (930)
                      ...+..+...                     .....++..+....+++.+++.++.+....+..    ....++.|++++
T Consensus       283 ~~~l~~~~~~---------------------~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~----~~~~L~~L~l~~  337 (635)
T 4g8a_A          283 IEEFRLAYLD---------------------YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS----YNFGWQHLELVN  337 (635)
T ss_dssp             EEEEEEECCC---------------------SCEEECTTTTGGGTTCSEEEEESCEEEECGGGG----SCCCCSEEEEES
T ss_pred             hhhhhhhhhc---------------------ccccchhhhhhhhcccccccccccccccccccc----cchhhhhhhccc
Confidence            1111111000                     000122233444555666666666554322211    234455555555


Q ss_pred             ccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCcccc--ccCc
Q 047985          452 NFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSG--TIPD  529 (930)
Q Consensus       452 N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~--~~p~  529 (930)
                      |.+..+..                   .   .+ ..|+.++++.|.+....  ....++. |+.|++++|.+..  ..+.
T Consensus       338 ~~~~~~~~-------------------~---~l-~~L~~l~l~~n~~~~~~--~~~~l~~-L~~L~ls~n~l~~~~~~~~  391 (635)
T 4g8a_A          338 CKFGQFPT-------------------L---KL-KSLKRLTFTSNKGGNAF--SEVDLPS-LEFLDLSRNGLSFKGCCSQ  391 (635)
T ss_dssp             CEESSCCC-------------------C---BC-TTCCEEEEESCCSCCBC--CCCBCTT-CCEEECCSSCCBEEEECCH
T ss_pred             ccccCcCc-------------------c---cc-hhhhhcccccccCCCCc--ccccccc-cccchhhcccccccccccc
Confidence            54443221                   1   11 45666666666655332  2334553 7777777776642  3445


Q ss_pred             ccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCc-ccccCCCCCcEEEccCCcccccCCCCCccCCC
Q 047985          530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP-SWLGTLPDLNVLILKSNKFHGLIREPKTDCGF  608 (930)
Q Consensus       530 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l  608 (930)
                      .+..+.+|+++++..|.+.+. +..+..+++|+.++++.|+.....+ ..+..+++++.++++.|.+.+..+..+  ..+
T Consensus       392 ~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~  468 (635)
T 4g8a_A          392 SDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGL  468 (635)
T ss_dssp             HHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT--TTC
T ss_pred             chhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccccccccccccccccccccccccccc--ccc
Confidence            555667777777777777643 4456777788888887776665544 446677888888888888877766554  567


Q ss_pred             CCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcc
Q 047985          609 PKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILS  688 (930)
Q Consensus       609 ~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  688 (930)
                      +.|++|++++|.+.+.+++..+.                                              .++.|+.|||+
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~----------------------------------------------~l~~L~~L~Ls  502 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFT----------------------------------------------ELRNLTFLDLS  502 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCT----------------------------------------------TCTTCCEEECT
T ss_pred             hhhhhhhhhhcccccccCchhhh----------------------------------------------hccccCEEECC
Confidence            78888888888754332211111                                              13458899999


Q ss_pred             cccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCC-CCCCeeecCCCcccc
Q 047985          689 SNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVEL-TFLEFFNVSDNHFTG  766 (930)
Q Consensus       689 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L-~~L~~L~ls~N~L~g  766 (930)
                      +|+|++.+|..|+++++|++|+|++|+|++.+|..|+++++|++|||++|+|++.+|..+..+ ++|++|++++|+++.
T Consensus       503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999988 689999999999975

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.9e-42  Score=416.48  Aligned_cols=514  Identities=20%  Similarity=0.181  Sum_probs=335.6

Q ss_pred             CCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchh-hhhhCC
Q 047985           95 HLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLG-NLADKL  173 (930)
Q Consensus        95 ~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~-~~l~~l  173 (930)
                      ++++|||++|.+++. .|..|.++++|++|||++|.+++..|..|.++++|++|+|++|++        ..++ ..+.++
T Consensus        53 ~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l--------~~l~~~~f~~L  123 (635)
T 4g8a_A           53 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--------QSLALGAFSGL  123 (635)
T ss_dssp             TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--------CEECGGGGTTC
T ss_pred             CCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC--------CCCCHHHhcCC
Confidence            677777777777653 344677777777777777777765566677777777777777753        2232 356677


Q ss_pred             CCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCC-CCcccccCCCCCcEEEccCCCCCCchhhhhcCCCC----C
Q 047985          174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG-RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGS----L  248 (930)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~----L  248 (930)
                      ++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.+    +
T Consensus       124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~  203 (635)
T 4g8a_A          124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  203 (635)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred             CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence            777777777777777666667777777777777777764 35666677777777777777777666665554433    3


Q ss_pred             CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCC-CCCCCCCCcCCcEEEccCCC------CCCccCcccccccccc
Q 047985          249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGK-VPSSLGNLTQLHWLSLASND------FSGELPASFGNLRSLR  321 (930)
Q Consensus       249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~------l~~~~p~~l~~l~~L~  321 (930)
                      ..++++.|.++...+ .......++.+++.+|..... .+..+..+..++...+..+.      +.......+..+..+.
T Consensus       204 ~~~~ls~n~l~~i~~-~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~  282 (635)
T 4g8a_A          204 LSLDLSLNPMNFIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT  282 (635)
T ss_dssp             CEEECTTCCCCEECT-TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred             hhhhcccCcccccCc-ccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence            356777777664333 333344556666666644322 12234444555544443222      1222223344444444


Q ss_pred             eeecccccccC---CCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCcccccee
Q 047985          322 TLDVYECKFSG---QIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAV  398 (930)
Q Consensus       322 ~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L  398 (930)
                      ..++..+....   .++..+..+.+++.+++..+.+....+.    .....++.|++.+|.+.....    .....++.+
T Consensus       283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~----~~l~~L~~l  354 (635)
T 4g8a_A          283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF----SYNFGWQHLELVNCKFGQFPT----LKLKSLKRL  354 (635)
T ss_dssp             EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG----GSCCCCSEEEEESCEESSCCC----CBCTTCCEE
T ss_pred             hhhhhhhhhcccccchhhhhhhhccccccccccccccccccc----ccchhhhhhhcccccccCcCc----ccchhhhhc
Confidence            44444433221   1222334455566666665554432221    334556666666654432221    123445555


Q ss_pred             eeccCCCCCcchhhhcCCCcCEEeCCCCCCcCC--CCccccCCCCCCceEEeccCccCcCC----CCCCCcceEEeccCc
Q 047985          399 SLCSCDLTEIPKFLKNQHHLELLDLASNKINGK--VPKWLLDPSMQNFGHLNLSHNFLTGF----DQHPNTVNYLVSNNS  472 (930)
Q Consensus       399 ~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~--~p~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~l~~l~ls~n~  472 (930)
                      .+..+.....+. ...+++|+.+++++|.+...  .+....  .+.+|+.+++..|.....    ...+.++.++++.++
T Consensus       355 ~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~  431 (635)
T 4g8a_A          355 TFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN  431 (635)
T ss_dssp             EEESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHH--SCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE
T ss_pred             ccccccCCCCcc-cccccccccchhhccccccccccccchh--hhhhhhhhhccccccccccccccccccccchhhhhcc
Confidence            665555543322 23566677777777766432  232222  456667777766654432    235667777777776


Q ss_pred             CCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccc-cccCcccCCCCCccEEEccCccccccC
Q 047985          473 LTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFS-GTIPDNLLKGNILKVIDLSDNLLQGRI  551 (930)
Q Consensus       473 l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~  551 (930)
                      .....+...+....+++.++++.|.+.+..|..+..++. |+.|++++|++. +.+|..+..+++|++|+|++|++++..
T Consensus       432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~-L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~  510 (635)
T 4g8a_A          432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS  510 (635)
T ss_dssp             EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccccccccccccccccccccccccccccccccccchh-hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC
Confidence            665555443333388999999999999988888888885 999999999854 457888999999999999999999999


Q ss_pred             CccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCC-CCceEEECCCCcCcccCChHHH
Q 047985          552 PRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGF-PKLRIIDLSKNRFTGKLPSMAF  630 (930)
Q Consensus       552 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~LdLs~N~l~g~ip~~~~  630 (930)
                      |..|.++++|++|+|++|+|+++.|..|..+++|++|+|++|++++..|..+  ..+ ++|++|+|++|++++.....+|
T Consensus       511 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l~~~L~~L~L~~Np~~C~C~~~~~  588 (635)
T 4g8a_A          511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCEHQSF  588 (635)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT--TCCCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH--HhhhCcCCEEEeeCCCCcccCCcHHH
Confidence            9999999999999999999999999999999999999999999999988766  455 6899999999999987665554


Q ss_pred             hh
Q 047985          631 QC  632 (930)
Q Consensus       631 ~~  632 (930)
                      ..
T Consensus       589 ~~  590 (635)
T 4g8a_A          589 LQ  590 (635)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.2e-43  Score=416.86  Aligned_cols=447  Identities=20%  Similarity=0.232  Sum_probs=254.9

Q ss_pred             CCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEc
Q 047985          198 SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL  277 (930)
Q Consensus       198 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  277 (930)
                      ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+|++|.++ .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            45555555555555444445555555555555555555544555555555555555555554 34433  4555555555


Q ss_pred             cCCCCCC-CCCCCCCCCcCCcEEEccCCCCCCccCccccccccc--ceeecccccc--cCCCcccccCCC--CCCEEEcc
Q 047985          278 SLNRFLG-KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSL--RTLDVYECKF--SGQIPSSLSNLT--HLSFLDFS  350 (930)
Q Consensus       278 s~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~--~L~~L~Ls  350 (930)
                      ++|++++ .+|..|+++++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|..+..+.  .+ .++++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~  204 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFH  204 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEEC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEec
Confidence            5555544 2234555555555555555555432   22233333  5555555555  444554444432  12 33445


Q ss_pred             CCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcC
Q 047985          351 LNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKING  430 (930)
Q Consensus       351 ~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~  430 (930)
                      .|.+.+.++...+ ..+++|+.+++++|......                    +...+..+..++.|+.++++++.+.+
T Consensus       205 ~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~--------------------l~~~~~~l~~l~~L~~L~L~~~~l~~  263 (562)
T 3a79_B          205 PNSLFSVQVNMSV-NALGHLQLSNIKLNDENCQR--------------------LMTFLSELTRGPTLLNVTLQHIETTW  263 (562)
T ss_dssp             SSSCCCCCCEEEE-SSEEEEEEEEEECCSTTHHH--------------------HHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred             Cccchhhhhhhcc-cccceEEEecccccccccch--------------------HHHHHHHHhccCcceEEEecCCcCcH
Confidence            5555443332211 33444444444444210000                    00111223333444444443332221


Q ss_pred             CCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccc----
Q 047985          431 KVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCL----  506 (930)
Q Consensus       431 ~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l----  506 (930)
                                                              +.+. .++..+. . .+|++|++++|.++|.+|..+    
T Consensus       264 ----------------------------------------~~~~-~~~~~~~-~-~~L~~L~l~~n~l~~~ip~~~~~~~  300 (562)
T 3a79_B          264 ----------------------------------------KCSV-KLFQFFW-P-RPVEYLNIYNLTITERIDREEFTYS  300 (562)
T ss_dssp             ----------------------------------------HHHH-HHHHHHT-T-SSEEEEEEEEEEECSCCCCCCCCCC
T ss_pred             ----------------------------------------HHHH-HHHHhhh-c-ccccEEEEeccEeeccccchhhhcc
Confidence                                                    1111 1111111 1 356666666666666666555    


Q ss_pred             -cccccCCceeecCCCccccccCc-ccC---CCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccC
Q 047985          507 -GNFSDWLSILDLQHNKFSGTIPD-NLL---KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGT  581 (930)
Q Consensus       507 -~~~~~~L~~L~Ls~N~l~~~~p~-~~~---~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  581 (930)
                       ..+.. |+.++++.|.+  .+|. .+.   ...+|++|++++|.+....  ....+++|++|++++|++++.+|..+..
T Consensus       301 ~~~L~~-L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~  375 (562)
T 3a79_B          301 ETALKS-LMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCST  375 (562)
T ss_dssp             SCSCCE-EEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCS
T ss_pred             cccchh-eehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcc
Confidence             44443 55555555554  3331 111   1245777777777765332  1256777888888888887777777777


Q ss_pred             CCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccce
Q 047985          582 LPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYD  661 (930)
Q Consensus       582 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~  661 (930)
                      +++|++|+|++|++++..+.+..+..+++|++|++++|.+++.+|...+.                              
T Consensus       376 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------------------------------  425 (562)
T 3a79_B          376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA------------------------------  425 (562)
T ss_dssp             CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC------------------------------
T ss_pred             cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc------------------------------
Confidence            88888888888877764322222356778888888888887666643211                              


Q ss_pred             eeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCc
Q 047985          662 YSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS  741 (930)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ls  741 (930)
                                      .++.|+.|+|++|++++.+|..+.  ++|+.|+|++|+++ .+|..+.++++|+.|||++|+++
T Consensus       426 ----------------~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          426 ----------------WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             ----------------CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred             ----------------CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence                            134578888888888888777665  68999999999998 78888889999999999999999


Q ss_pred             ccCCcc-ccCCCCCCeeecCCCcccccCCC
Q 047985          742 GQIPQQ-LVELTFLEFFNVSDNHFTGPIPQ  770 (930)
Q Consensus       742 g~ip~~-l~~L~~L~~L~ls~N~L~g~iP~  770 (930)
                       .+|.. +..+++|++|++++|++.+..|.
T Consensus       487 -~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          487 -SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             -CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             -CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence             56665 88899999999999999987764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.4e-41  Score=398.71  Aligned_cols=465  Identities=20%  Similarity=0.229  Sum_probs=269.3

Q ss_pred             CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCC
Q 047985           94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL  173 (930)
Q Consensus        94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l  173 (930)
                      ...+++|+++|.++.  +|..+.  ++|++|+|++|.+++..|..++++++|++|++++|                    
T Consensus        31 ~~~~~l~ls~~~L~~--ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N--------------------   86 (562)
T 3a79_B           31 ELESMVDYSNRNLTH--VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN--------------------   86 (562)
T ss_dssp             --CCEEECTTSCCCS--CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC--------------------
T ss_pred             CCCcEEEcCCCCCcc--CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC--------------------
Confidence            334667777776663  455443  56666666666666555555555555555555555                    


Q ss_pred             CCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCc-hhhhhcCCCCCCEEE
Q 047985          174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDE-LPTFIGTLGSLKELD  252 (930)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~  252 (930)
                                 .+++..|..|.++++|++|++++|.++ .+|..  .+++|++|++++|.+++. +|..++++++|++|+
T Consensus        87 -----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~  152 (562)
T 3a79_B           87 -----------RIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG  152 (562)
T ss_dssp             -----------CCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred             -----------CCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEe
Confidence                       344445566667777777777777776 34444  566677777777766652 345666666666666


Q ss_pred             ccCCCCCCCcchhhcCCCCC--CEEEccCCCC--CCCCCCCCCCCc--CCcEEEccCCCCCCccCc-ccccccccceeec
Q 047985          253 LLQNNLSGELPNSIGNLASL--EQVDLSLNRF--LGKVPSSLGNLT--QLHWLSLASNDFSGELPA-SFGNLRSLRTLDV  325 (930)
Q Consensus       253 L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L  325 (930)
                      +++|.+++.   .+..+++|  ++|++++|++  ++..|..+..+.  .| .+++++|.+.+.++. .+..+++|+.|++
T Consensus       153 L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l  228 (562)
T 3a79_B          153 LSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNI  228 (562)
T ss_dssp             EECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEE
T ss_pred             cCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecc
Confidence            666666542   23333333  6666666666  555555554433  22 345555555543332 2344555555555


Q ss_pred             ccccc-----cCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeee
Q 047985          326 YECKF-----SGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSL  400 (930)
Q Consensus       326 ~~n~l-----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l  400 (930)
                      ++|+.     .+. +..+..+++|+.|++.++.+.+                                            
T Consensus       229 ~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~--------------------------------------------  263 (562)
T 3a79_B          229 KLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTW--------------------------------------------  263 (562)
T ss_dssp             ECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECH--------------------------------------------
T ss_pred             cccccccchHHHH-HHHHhccCcceEEEecCCcCcH--------------------------------------------
Confidence            55531     111 1123333444444443333221                                            


Q ss_pred             ccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCch-
Q 047985          401 CSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPS-  479 (930)
Q Consensus       401 ~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~-  479 (930)
                        +.+..++..+ ..++|++|++++|.+.|.+|..+......+|+.|.+.++                ..+.+  .+|. 
T Consensus       264 --~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~----------------~~~~~--~~p~~  322 (562)
T 3a79_B          264 --KCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV----------------KNQVF--LFSKE  322 (562)
T ss_dssp             --HHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE----------------EECCC--SSCHH
T ss_pred             --HHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhc----------------cccee--ecChh
Confidence              1111222222 234788999999998888888764212233333332221                22222  2331 


Q ss_pred             HHhhcc--cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccC
Q 047985          480 WICNLS--NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLAN  557 (930)
Q Consensus       480 ~~~~~~--~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  557 (930)
                      .+....  .+|+.|++++|.+....   +                        ...+++|++|++++|++++.+|..+.+
T Consensus       323 ~~~~~~~~~~L~~L~l~~n~~~~~~---~------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~  375 (562)
T 3a79_B          323 ALYSVFAEMNIKMLSISDTPFIHMV---C------------------------PPSPSSFTFLNFTQNVFTDSVFQGCST  375 (562)
T ss_dssp             HHHHHHHTCCCSEEEEESSCCCCCC---C------------------------CSSCCCCCEEECCSSCCCTTTTTTCCS
T ss_pred             hhhhhhccCcceEEEccCCCccccc---C------------------------ccCCCCceEEECCCCccccchhhhhcc
Confidence            222110  23555555555543211   0                        133455555555555555555555666


Q ss_pred             CCCCcEecccCcccccc--CcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhccc
Q 047985          558 CSNLEFLDLGDNQIRDI--FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNA  635 (930)
Q Consensus       558 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~  635 (930)
                      +++|++|++++|++++.  +|..+..+++|++|+|++|++++.+|... +..+++|++|++++|++++.+|..       
T Consensus       376 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-------  447 (562)
T 3a79_B          376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT-CAWAESILVLNLSSNMLTGSVFRC-------  447 (562)
T ss_dssp             CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-CCCCTTCCEEECCSSCCCGGGGSS-------
T ss_pred             cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh-hcCcccCCEEECCCCCCCcchhhh-------
Confidence            66666666666666653  24456666666666666666666444331 245677888888888877554421       


Q ss_pred             ceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCcc
Q 047985          636 MKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNS  715 (930)
Q Consensus       636 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  715 (930)
                                                                .++.|+.|+|++|+++ .+|..+..+++|+.|+|++|+
T Consensus       448 ------------------------------------------l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          448 ------------------------------------------LPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ  484 (562)
T ss_dssp             ------------------------------------------CCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred             ------------------------------------------hcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence                                                      1235888999999998 788888899999999999999


Q ss_pred             ccccCccc-ccccCCCCeeeCCCCcCcccCC
Q 047985          716 LHGHIPSC-LGNLTDLESLDLSNNRFSGQIP  745 (930)
Q Consensus       716 l~g~ip~~-l~~L~~L~~LdLs~N~lsg~ip  745 (930)
                      ++ .+|.. ++.+++|+.|+|++|++++..|
T Consensus       485 l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          485 LK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            99 56665 9999999999999999998776

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.7e-41  Score=368.55  Aligned_cols=294  Identities=34%  Similarity=0.548  Sum_probs=220.5

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCc--ccceEecCCC--CcEEEEEcCCCC
Q 047985            4 PLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCS--WDGVQCNENT--GHVIKLDLSSSC   79 (930)
Q Consensus         4 ~~c~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~--w~gv~C~~~~--~~v~~L~L~~~~   79 (930)
                      +.|.++|++||++||+++.++.               .+++|..    +++||.  |+||+|+..+  ++|+.|+|+++.
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~---------------~l~~W~~----~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~   61 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPT---------------TLSSWLP----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN   61 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG---------------GGTTCCT----TSCTTTTCSTTEEECCSSSCCCEEEEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHhcCCcc---------------cccCCCC----CCCCCcCCCcceEeCCCCCCceEEEEECCCCC
Confidence            4699999999999999997542               5789976    578998  9999998655  899999999999


Q ss_pred             Ccc--cccCcccccCCCCCCEEECCC-CCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCC
Q 047985           80 LQG--SINSSSSLFKLVHLEWLDLAF-NDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYY  156 (930)
Q Consensus        80 l~g--~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~  156 (930)
                      +.|  .++.  .+..+++|++|+|++ |.+.+. +|..++++++|++|+|++|.+++.+|..++++++|++|++++|.+ 
T Consensus        62 l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-  137 (313)
T 1ogq_A           62 LPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-  137 (313)
T ss_dssp             CSSCEECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-
T ss_pred             ccCCcccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc-
Confidence            998  7766  899999999999995 888876 888899999999999999999989999999999999999998843 


Q ss_pred             CCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCC-CCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCC
Q 047985          157 DPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLS-SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLS  235 (930)
Q Consensus       157 ~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  235 (930)
                         .   +.+|..+.++++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.++
T Consensus       138 ---~---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          138 ---S---GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             ---E---SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred             ---C---CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence               2   34555666677777777777777666666666665 677777777766666666666665 666666666666


Q ss_pred             CchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccc
Q 047985          236 DELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFG  315 (930)
Q Consensus       236 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  315 (930)
                      +..|..+..+++|++|++++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|++|+|++|++++.+|.. .
T Consensus       211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~  288 (313)
T 1ogq_A          211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G  288 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred             CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c
Confidence            66666666666666666666666655444 556666666666666666666666666666666666666666666554 5


Q ss_pred             cccccceeeccccc
Q 047985          316 NLRSLRTLDVYECK  329 (930)
Q Consensus       316 ~l~~L~~L~L~~n~  329 (930)
                      .+++|+.|++++|+
T Consensus       289 ~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          289 NLQRFDVSAYANNK  302 (313)
T ss_dssp             TGGGSCGGGTCSSS
T ss_pred             cccccChHHhcCCC
Confidence            56666666666665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.6e-39  Score=370.48  Aligned_cols=402  Identities=24%  Similarity=0.329  Sum_probs=188.0

Q ss_pred             CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEE
Q 047985          173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELD  252 (930)
Q Consensus       173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  252 (930)
                      .++|++|++++|.+ +.+|.+++++++|++|++++|.+.|.+|..++++++|+.+++..|..           .++++|+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~   77 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE   77 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence            46777777777777 67777777777777777777777777777777776665555444321           3567777


Q ss_pred             ccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985          253 LLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG  332 (930)
Q Consensus       253 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~  332 (930)
                      +++|.+++ +|..   .++|++|++++|.+++ +|..   +++|++|++++|++++ +|..   .++|++|++++|++++
T Consensus        78 l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~  145 (454)
T 1jl5_A           78 LNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK  145 (454)
T ss_dssp             CTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS
T ss_pred             ecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC
Confidence            77777764 3331   3577777777777776 5543   3677777777777764 2221   1577777777777775


Q ss_pred             CCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhh
Q 047985          333 QIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL  412 (930)
Q Consensus       333 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l  412 (930)
                       +| .++.+++|++|++++|++++ +|.     ..                                             
T Consensus       146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~-----~~---------------------------------------------  172 (454)
T 1jl5_A          146 -LP-ELQNSSFLKIIDVDNNSLKK-LPD-----LP---------------------------------------------  172 (454)
T ss_dssp             -CC-CCTTCTTCCEEECCSSCCSC-CCC-----CC---------------------------------------------
T ss_pred             -Cc-ccCCCCCCCEEECCCCcCcc-cCC-----Cc---------------------------------------------
Confidence             55 47777777777777777664 221     00                                             


Q ss_pred             hcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceee
Q 047985          413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLD  492 (930)
Q Consensus       413 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~  492 (930)
                         .+|++|++++|++++ +| .+.  .+++|++|++++|+++++...+                        ++|++|+
T Consensus       173 ---~~L~~L~L~~n~l~~-l~-~~~--~l~~L~~L~l~~N~l~~l~~~~------------------------~~L~~L~  221 (454)
T 1jl5_A          173 ---PSLEFIAAGNNQLEE-LP-ELQ--NLPFLTAIYADNNSLKKLPDLP------------------------LSLESIV  221 (454)
T ss_dssp             ---TTCCEEECCSSCCSS-CC-CCT--TCTTCCEEECCSSCCSSCCCCC------------------------TTCCEEE
T ss_pred             ---ccccEEECcCCcCCc-Cc-ccc--CCCCCCEEECCCCcCCcCCCCc------------------------CcccEEE
Confidence               134444444444443 22 122  3444444444444443321100                        2344555


Q ss_pred             cccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCcccc
Q 047985          493 LSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR  572 (930)
Q Consensus       493 Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  572 (930)
                      +++|+++ .+|. ++.++. |++|++++|++++ +|..   .++|++|++++|++++ +|..   .++|+.|++++|+++
T Consensus       222 l~~n~l~-~lp~-~~~l~~-L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          222 AGNNILE-ELPE-LQNLPF-LTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS  290 (454)
T ss_dssp             CCSSCCS-SCCC-CTTCTT-CCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             CcCCcCC-cccc-cCCCCC-CCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence            5555444 3332 444443 5555555555542 2321   2445555555555554 2322   245555555555555


Q ss_pred             ccCcccccCCCCCcEEEccCCcccccCCCCCccCCC-CCceEEECCCCcCcccCChHHHhhcccceeccccccccccccc
Q 047985          573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGF-PKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVI  651 (930)
Q Consensus       573 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~  651 (930)
                      +.. .   ..++|+.|++++|++++..       .+ ++|++|++++|++++ +|..                       
T Consensus       291 ~l~-~---~~~~L~~L~l~~N~l~~i~-------~~~~~L~~L~Ls~N~l~~-lp~~-----------------------  335 (454)
T 1jl5_A          291 GLS-E---LPPNLYYLNASSNEIRSLC-------DLPPSLEELNVSNNKLIE-LPAL-----------------------  335 (454)
T ss_dssp             EES-C---CCTTCCEEECCSSCCSEEC-------CCCTTCCEEECCSSCCSC-CCCC-----------------------
T ss_pred             ccc-C---cCCcCCEEECcCCcCCccc-------CCcCcCCEEECCCCcccc-cccc-----------------------
Confidence            521 1   0145566666666555431       11 356666666666653 3311                       


Q ss_pred             cCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccc--cCcccccccCC
Q 047985          652 PFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHG--HIPSCLGNLTD  729 (930)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~ip~~l~~L~~  729 (930)
                                                 ++.|+.|++++|+++ .+|.   .+++|+.|+|++|++++  .+|.+++++  
T Consensus       336 ---------------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--  382 (454)
T 1jl5_A          336 ---------------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--  382 (454)
T ss_dssp             ---------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--
T ss_pred             ---------------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--
Confidence                                       123566666666666 3454   35666666666666666  555554432  


Q ss_pred             CCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccc--cCCC
Q 047985          730 LESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTG--PIPQ  770 (930)
Q Consensus       730 L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g--~iP~  770 (930)
                            +.|.+.|.+|..   +++|++||+++|+++|  .||.
T Consensus       383 ------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          383 ------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             ------ECCC---------------------------------
T ss_pred             ------hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence                  335555666553   3556666667776666  5664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.8e-39  Score=370.31  Aligned_cols=425  Identities=23%  Similarity=0.264  Sum_probs=205.6

Q ss_pred             cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985           89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN  168 (930)
Q Consensus        89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  168 (930)
                      .-.+.++|++|++++|.+ +. +|+.++++++|++|++++|.+.|.+|..++++++|++++++.|.              
T Consensus         6 ~~~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~--------------   69 (454)
T 1jl5_A            6 RNVSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL--------------   69 (454)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH--------------
T ss_pred             cccccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh--------------
Confidence            334568999999999999 44 89999999999999999999999999999999887555554441              


Q ss_pred             hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985          169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL  248 (930)
Q Consensus       169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  248 (930)
                          ..++++|++++|.+++. |.   ..++|++|++++|.+++ +|..   +++|++|++++|.+++. +..   .++|
T Consensus        70 ----~~~l~~L~l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L  133 (454)
T 1jl5_A           70 ----DRQAHELELNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLL  133 (454)
T ss_dssp             ----HHTCSEEECTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTC
T ss_pred             ----ccCCCEEEecCCccccC-CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCC
Confidence                03455555555555442 11   12455555555555554 3432   24555555555555532 110   1455


Q ss_pred             CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985          249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC  328 (930)
Q Consensus       249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  328 (930)
                      ++|++++|.+++ +| .++++++|++|++++|++++ +|..+   ++|++|++++|++++ +| .++.+++|++|++++|
T Consensus       134 ~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          134 EYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred             CEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC
Confidence            566666555553 44 35555566666666555553 33322   355556666665554 33 3555556666666665


Q ss_pred             cccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCc
Q 047985          329 KFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEI  408 (930)
Q Consensus       329 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~i  408 (930)
                      ++++ +|..   .++|++|++++|.++ .+|.   +..+++|++|++++|++..++.     .+.+|+.|++++|.+..+
T Consensus       206 ~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~---~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l  272 (454)
T 1jl5_A          206 SLKK-LPDL---PLSLESIVAGNNILE-ELPE---LQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDL  272 (454)
T ss_dssp             CCSS-CCCC---CTTCCEEECCSSCCS-SCCC---CTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCC
T ss_pred             cCCc-CCCC---cCcccEEECcCCcCC-cccc---cCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCccccc
Confidence            5553 2322   135556666666555 3331   2455555666665555443221     124566666666666666


Q ss_pred             chhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCC-CcceEEeccCcCCCCCchHHhhcccc
Q 047985          409 PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHP-NTVNYLVSNNSLTGEIPSWICNLSNR  487 (930)
Q Consensus       409 p~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~l~ls~n~l~g~ip~~~~~~~~~  487 (930)
                      |..   .++|++|++++|++++ +|.     ..++|++|++++|+++++...+ +++.+++++|++++ +|..   + ++
T Consensus       273 ~~~---~~~L~~L~ls~N~l~~-l~~-----~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~-~~  338 (454)
T 1jl5_A          273 PEL---PQSLTFLDVSENIFSG-LSE-----LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---P-PR  338 (454)
T ss_dssp             CCC---CTTCCEEECCSSCCSE-ESC-----CCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---C-TT
T ss_pred             Ccc---cCcCCEEECcCCccCc-ccC-----cCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---C-Cc
Confidence            553   3677788888887765 221     1256777888888777766553 77777777777775 5543   2 67


Q ss_pred             cceeecccccccCcCcccccccccCCceeecCCCcccc--ccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSG--TIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       488 L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      |++|++++|++++ +|.   .+. +|++|++++|++++  .+|..+..        ++.|.+.|.+|..   +++|+.||
T Consensus       339 L~~L~L~~N~l~~-lp~---~l~-~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~  402 (454)
T 1jl5_A          339 LERLIASFNHLAE-VPE---LPQ-NLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLH  402 (454)
T ss_dssp             CCEEECCSSCCSC-CCC---CCT-TCCEEECCSSCCSSCCCCCTTCCE--------EECCC-------------------
T ss_pred             CCEEECCCCcccc-ccc---hhh-hccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEE
Confidence            8888888888874 555   234 48888888888887  56655432        3446666666653   47899999


Q ss_pred             ccCccccc--cCcccccCCCCCcEEEccCCcccccCCCC
Q 047985          566 LGDNQIRD--IFPSWLGTLPDLNVLILKSNKFHGLIREP  602 (930)
Q Consensus       566 Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  602 (930)
                      +++|++++  .+|.      +++.|.+.+|.+.+.++..
T Consensus       403 ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          403 VETNPLREFPDIPE------SVEDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             ---------------------------------------
T ss_pred             CCCCcCCccccchh------hHhheeCcCcccCCccccC
Confidence            99999987  5554      4566778888887766543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.7e-37  Score=359.04  Aligned_cols=139  Identities=27%  Similarity=0.322  Sum_probs=127.7

Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      ++|+.|++++|.+++.+|..+..+++ |++|+|++|++++..|..+..+++|++|+|++|++++..|..|.++++|++|+
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             cCceEEEecCccccccchhhcccCCC-CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            57999999999999988999999886 99999999999988888999999999999999999998899999999999999


Q ss_pred             ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCCh
Q 047985          566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPS  627 (930)
Q Consensus       566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~  627 (930)
                      |++|++++..|..|..+++|++|+|++|++++..+..+  ..+++|++|++++|++++.+|.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccCCCc
Confidence            99999999999999999999999999999998765544  6789999999999999999983

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.7e-38  Score=360.81  Aligned_cols=365  Identities=21%  Similarity=0.199  Sum_probs=202.7

Q ss_pred             cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985           89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN  168 (930)
Q Consensus        89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  168 (930)
                      .++++++|++|++++|.+++  +| .++.+++|++|+|++|.+++. |  ++.+++|++|++++|.+             
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l-------------   97 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKL-------------   97 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCC-------------
T ss_pred             ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCC-------------
Confidence            56667777777777777765  34 467777777777777777653 3  66666677777766642             


Q ss_pred             hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985          169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL  248 (930)
Q Consensus       169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  248 (930)
                                        ++. +  ++++++|++|++++|++++. |  ++.+++|++|++++|.+++.   .++.+++|
T Consensus        98 ------------------~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L  150 (457)
T 3bz5_A           98 ------------------TNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQL  150 (457)
T ss_dssp             ------------------SCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTC
T ss_pred             ------------------cee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcC
Confidence                              221 1  34444555555555554432 2  44555555555555555543   14455555


Q ss_pred             CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985          249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC  328 (930)
Q Consensus       249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  328 (930)
                      ++|++++|...+.+  .++.+++|++|++++|++++ +|  +..+++|+.|++++|.+++.   .++.+++|++|++++|
T Consensus       151 ~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          151 TELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN  222 (457)
T ss_dssp             CEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS
T ss_pred             CEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC
Confidence            55555555443333  24555556666666665554 22  55555666666666665543   2555556666666666


Q ss_pred             cccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCc
Q 047985          329 KFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEI  408 (930)
Q Consensus       329 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~i  408 (930)
                      ++++ +|  ++.+++|+.|++++|++++..+     ..+++|+.|+++.|                              
T Consensus       223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~-----~~l~~L~~L~l~~n------------------------------  264 (457)
T 3bz5_A          223 KLTE-ID--VTPLTQLTYFDCSVNPLTELDV-----STLSKLTTLHCIQT------------------------------  264 (457)
T ss_dssp             CCSC-CC--CTTCTTCSEEECCSSCCSCCCC-----TTCTTCCEEECTTC------------------------------
T ss_pred             cccc-cC--ccccCCCCEEEeeCCcCCCcCH-----HHCCCCCEEeccCC------------------------------
Confidence            6554 33  5555556666666555554221     22233333333322                              


Q ss_pred             chhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhccccc
Q 047985          409 PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRL  488 (930)
Q Consensus       409 p~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L  488 (930)
                              +|+.|++++|                                             .+.|.+|.  ..+ ++|
T Consensus       265 --------~L~~L~l~~n---------------------------------------------~~~~~~~~--~~l-~~L  288 (457)
T 3bz5_A          265 --------DLLEIDLTHN---------------------------------------------TQLIYFQA--EGC-RKI  288 (457)
T ss_dssp             --------CCSCCCCTTC---------------------------------------------TTCCEEEC--TTC-TTC
T ss_pred             --------CCCEEECCCC---------------------------------------------ccCCcccc--ccc-ccC
Confidence                    1222333333                                             33333331  222 556


Q ss_pred             ceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccC
Q 047985          489 ESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGD  568 (930)
Q Consensus       489 ~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  568 (930)
                      +.|++++|.+.+.+|..   .. .|+.|++++|             ++|++|++++|++++. +  +.++++|+.|++++
T Consensus       289 ~~L~Ls~n~~l~~l~~~---~~-~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~  348 (457)
T 3bz5_A          289 KELDVTHNTQLYLLDCQ---AA-GITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVN  348 (457)
T ss_dssp             CCCCCTTCTTCCEEECT---TC-CCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCS
T ss_pred             CEEECCCCcccceeccC---CC-cceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCC
Confidence            66666666665555532   22 2555555444             4566777777777663 2  66677777777777


Q ss_pred             ccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccc
Q 047985          569 NQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAM  636 (930)
Q Consensus       569 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l  636 (930)
                      |++++.        +.|..|++++|.+.|.       ..+..|+.+|+++|+++|.||...+.....+
T Consensus       349 N~l~~l--------~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~  401 (457)
T 3bz5_A          349 AHIQDF--------SSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQFGNP  401 (457)
T ss_dssp             SCCCBC--------TTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTTSCC
T ss_pred             CCCCCc--------cccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhHhcccCce
Confidence            777652        3455556777777665       2345677788888888888887655444433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3e-37  Score=356.95  Aligned_cols=319  Identities=22%  Similarity=0.209  Sum_probs=202.1

Q ss_pred             ccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhh--hcCCCCCCEEEccCCCCCCCcchh-hcCCC
Q 047985          194 LTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTF--IGTLGSLKELDLLQNNLSGELPNS-IGNLA  270 (930)
Q Consensus       194 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~  270 (930)
                      |.++++|++|+|++|.+++..|..++++++|++|++++|.+++..+..  +..+++|++|++++|.+++..|.. +.+++
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            334444444444444554445555566666666666666666544443  666666666666666666655554 56667


Q ss_pred             CCCEEEccCCCCCCCCCCCCCCC--cCCcEEEccCCCCCCccCccc--------ccccccceeecccccccCCCcccccC
Q 047985          271 SLEQVDLSLNRFLGKVPSSLGNL--TQLHWLSLASNDFSGELPASF--------GNLRSLRTLDVYECKFSGQIPSSLSN  340 (930)
Q Consensus       271 ~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~l--------~~l~~L~~L~L~~n~l~~~~p~~l~~  340 (930)
                      +|++|++++|++++..|..+..+  .+|+.|++++|.+.+..+..+        ..+++|++|++++|++++..|..+..
T Consensus       155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence            77777777777666666666555  566667777766665433322        23345555555555555444443322


Q ss_pred             C---CCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCc-chhhh--c
Q 047985          341 L---THLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEI-PKFLK--N  414 (930)
Q Consensus       341 l---~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~i-p~~l~--~  414 (930)
                      .   ++|+.|++++|...+....                                         .+.+... +..+.  .
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~  273 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFG-----------------------------------------HTNFKDPDNFTFKGLE  273 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTT-----------------------------------------CCSSCCCCTTTTGGGT
T ss_pred             cccccceeeEeeccccccccccc-----------------------------------------hhhhccCccccccccc
Confidence            1   4444444444433221100                                         0000000 00000  1


Q ss_pred             CCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecc
Q 047985          415 QHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLS  494 (930)
Q Consensus       415 ~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls  494 (930)
                      .++|++|++++|.+.+                                             .+|..+..+ ++|++|+++
T Consensus       274 ~~~L~~L~l~~n~l~~---------------------------------------------~~~~~~~~l-~~L~~L~Ls  307 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFA---------------------------------------------LLKSVFSHF-TDLEQLTLA  307 (455)
T ss_dssp             TSCCCEEECCSSCCCE---------------------------------------------ECTTTTTTC-TTCCEEECT
T ss_pred             ccCceEEEecCccccc---------------------------------------------cchhhcccC-CCCCEEECC
Confidence            2344444444444443                                             344444455 678888888


Q ss_pred             cccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCcccccc
Q 047985          495 YNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI  574 (930)
Q Consensus       495 ~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  574 (930)
                      +|++++..|..+..++. |++|+|++|.+++..|..+..+++|++|+|++|++++..|..|..+++|++|++++|++++.
T Consensus       308 ~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  386 (455)
T 3v47_A          308 QNEINKIDDNAFWGLTH-LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV  386 (455)
T ss_dssp             TSCCCEECTTTTTTCTT-CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhcCccc-CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence            88888877888888885 99999999988877788888889999999999999888888899999999999999999988


Q ss_pred             CcccccCCCCCcEEEccCCcccccCC
Q 047985          575 FPSWLGTLPDLNVLILKSNKFHGLIR  600 (930)
Q Consensus       575 ~p~~l~~l~~L~~L~L~~N~l~~~~~  600 (930)
                      .+..+..+++|++|+|++|++++..|
T Consensus       387 ~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          387 PDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CHhHhccCCcccEEEccCCCcccCCC
Confidence            87788899999999999999987765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7e-36  Score=343.40  Aligned_cols=222  Identities=23%  Similarity=0.260  Sum_probs=150.4

Q ss_pred             CcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcE
Q 047985           68 GHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAY  147 (930)
Q Consensus        68 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  147 (930)
                      .+++.|+++++.+.+.  +  .+..+++|++|+|++|.+++.  |  ++.+++|++|++++|.+++. |  ++++++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~--~--~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~  110 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM--T--GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY  110 (457)
T ss_dssp             TTCCEEECCSSCCCCC--T--TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred             CCCCEEEccCCCcccC--h--hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence            5799999999999874  3  689999999999999999874  4  89999999999999999974 4  889999999


Q ss_pred             EEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEE
Q 047985          148 LDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHL  227 (930)
Q Consensus       148 L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  227 (930)
                      |++++|.+.        .++  +.++++|++|++++|.+++.   .++++++|++|++++|...+.+  .+..+++|++|
T Consensus       111 L~L~~N~l~--------~l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L  175 (457)
T 3bz5_A          111 LNCDTNKLT--------KLD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL  175 (457)
T ss_dssp             EECCSSCCS--------CCC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred             EECCCCcCC--------eec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence            999999642        122  56677777777777777663   2566667777777766544444  35566666666


Q ss_pred             EccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985          228 DLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS  307 (930)
Q Consensus       228 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  307 (930)
                      ++++|.+++. |  ++.+++|++|++++|.+++.   .++.+++|++|++++|++++ +|  +..+++|++|++++|+++
T Consensus       176 ~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          176 DCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             ECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred             ECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence            6666666653 2  55556666666666666543   25555566666666665554 33  555555555555555555


Q ss_pred             CccCcccccccccceeeccc
Q 047985          308 GELPASFGNLRSLRTLDVYE  327 (930)
Q Consensus       308 ~~~p~~l~~l~~L~~L~L~~  327 (930)
                      +..   ++.+++|+.|++++
T Consensus       247 ~~~---~~~l~~L~~L~l~~  263 (457)
T 3bz5_A          247 ELD---VSTLSKLTTLHCIQ  263 (457)
T ss_dssp             CCC---CTTCTTCCEEECTT
T ss_pred             CcC---HHHCCCCCEEeccC
Confidence            432   23344445554443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-33  Score=327.62  Aligned_cols=79  Identities=32%  Similarity=0.411  Sum_probs=49.2

Q ss_pred             ccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCC
Q 047985          682 LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSD  761 (930)
Q Consensus       682 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~  761 (930)
                      |+.|+|++|++++..|  ++.+++|+.|++++|.+++.  ..++++++|+.|++++|++++.+|  +..++.|+.|++++
T Consensus       311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  384 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND  384 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred             CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence            4555555555554444  45566666666666666654  346666666666666666666655  56666666666666


Q ss_pred             Ccccc
Q 047985          762 NHFTG  766 (930)
Q Consensus       762 N~L~g  766 (930)
                      |++++
T Consensus       385 n~~~~  389 (466)
T 1o6v_A          385 QAWTN  389 (466)
T ss_dssp             EEEEC
T ss_pred             CcccC
Confidence            66665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.8e-33  Score=324.25  Aligned_cols=235  Identities=28%  Similarity=0.383  Sum_probs=126.5

Q ss_pred             cCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhh
Q 047985           91 FKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLA  170 (930)
Q Consensus        91 ~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l  170 (930)
                      ..+++|+.|+++++.+..  +| .+..+++|++|+|++|.+.+..|  ++++++|++|++++|.+.        .++. +
T Consensus        43 ~~l~~l~~L~l~~~~i~~--l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~--------~~~~-~  108 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA--------DITP-L  108 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC--------CCGG-G
T ss_pred             hHhccccEEecCCCCCcc--Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc--------cChh-h
Confidence            346677777777777654  44 36677777777777777774433  777777777777777431        1222 5


Q ss_pred             hCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCE
Q 047985          171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE  250 (930)
Q Consensus       171 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  250 (930)
                      .++++|++|++++|.+++..+  +.++++|++|++++|.+.+. + .+..+++|++|+++ |.+.+..+  +.++++|++
T Consensus       109 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~  181 (466)
T 1o6v_A          109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLER  181 (466)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCE
T ss_pred             cCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh--hccCCCCCE
Confidence            556666666666666555432  55666666666666665532 2 35556666666664 33333222  555555666


Q ss_pred             EEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccc
Q 047985          251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF  330 (930)
Q Consensus       251 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l  330 (930)
                      |++++|.+++.  ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+++.  ..+..+++|++|++++|.+
T Consensus       182 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  255 (466)
T 1o6v_A          182 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI  255 (466)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             EECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcc
Confidence            66655555532  124555555555555555554433  44455555555555554432  2234444444444444444


Q ss_pred             cCCCcccccCCCCCCEEEccCCCC
Q 047985          331 SGQIPSSLSNLTHLSFLDFSLNNF  354 (930)
Q Consensus       331 ~~~~p~~l~~l~~L~~L~Ls~n~l  354 (930)
                      ++..+  +..+++|++|++++|.+
T Consensus       256 ~~~~~--~~~l~~L~~L~l~~n~l  277 (466)
T 1o6v_A          256 SNLAP--LSGLTKLTELKLGANQI  277 (466)
T ss_dssp             CCCGG--GTTCTTCSEEECCSSCC
T ss_pred             ccchh--hhcCCCCCEEECCCCcc
Confidence            43222  33344444444444333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.4e-34  Score=316.44  Aligned_cols=259  Identities=34%  Similarity=0.533  Sum_probs=226.6

Q ss_pred             cccceeecccccccC--cCcccccccccCCceeecCC-CccccccCcccCCCCCccEEEccCccccccCCccccCCCCCc
Q 047985          486 NRLESLDLSYNNLSG--LLPQCLGNFSDWLSILDLQH-NKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLE  562 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~--~~p~~l~~~~~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  562 (930)
                      .+++.|++++|.+++  .+|..+..++. |++|++++ |.+.+.+|..+..+++|++|+|++|++++.+|..|.++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            467888888888888  78888888885 88888884 888888888888888888888888888888888888888888


Q ss_pred             EecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCC-CceEEECCCCcCcccCChHHHhhcccceeccc
Q 047985          563 FLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFP-KLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNA  641 (930)
Q Consensus       563 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~  641 (930)
                      +|++++|++++.+|..+..+++|++|+|++|++++.+|..+  ..++ .|++|++++|++++.+|... ..         
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~-~~---------  196 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN---------  196 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG---------
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHH-hC---------
Confidence            88888888888888888888889999999988888777655  5566 89999999999988877541 11         


Q ss_pred             cccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCc
Q 047985          642 SELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIP  721 (930)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  721 (930)
                                                           .. |+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|
T Consensus       197 -------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  238 (313)
T 1ogq_A          197 -------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG  238 (313)
T ss_dssp             -------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred             -------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence                                                 12 8899999999999999999999999999999999998877


Q ss_pred             ccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCCCcCccCCcccCCCCCCCCCCCCCCC
Q 047985          722 SCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSEC  797 (930)
Q Consensus       722 ~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~~~~~~~~~s~~gn~~Lcg~~l~~~c  797 (930)
                      . ++.+++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|...++..+....+.||+.+||.|+. .|
T Consensus       239 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             c-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            7 89999999999999999999999999999999999999999999999888888888999999999998876 47

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=328.19  Aligned_cols=344  Identities=20%  Similarity=0.188  Sum_probs=260.4

Q ss_pred             EEEccCCcccccccccCCCCccccceeeeccCCCCCc-chhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEecc
Q 047985          372 HLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEI-PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLS  450 (930)
Q Consensus       372 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~i-p~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls  450 (930)
                      .++.+++.+..++..    .+..++.|++++|.+..+ +..+..+++|++|+|++|.+.+..|..+.  .+++|++|+|+
T Consensus        15 ~v~c~~~~l~~ip~~----~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~   88 (477)
T 2id5_A           15 AVLCHRKRFVAVPEG----IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLR   88 (477)
T ss_dssp             EEECCSCCCSSCCSC----CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECC
T ss_pred             EEEeCCCCcCcCCCC----CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECC
Confidence            455555544433221    234556666666666644 34555666666666666666555555554  55555555555


Q ss_pred             CccCcCCCCCCCcceEEeccCcCCCCCch-HHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCc
Q 047985          451 HNFLTGFDQHPNTVNYLVSNNSLTGEIPS-WICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD  529 (930)
Q Consensus       451 ~N~l~~~~~~~~l~~l~ls~n~l~g~ip~-~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~  529 (930)
                      +|+++                    .+|. .+..+ ++|++|++++|++++..|..+..+++ |++|++++|.+++..|.
T Consensus        89 ~n~l~--------------------~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~  146 (477)
T 2id5_A           89 SNRLK--------------------LIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHR  146 (477)
T ss_dssp             SSCCC--------------------SCCTTSSTTC-TTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEECTT
T ss_pred             CCcCC--------------------ccCcccccCC-CCCCEEECCCCccccCChhHcccccc-CCEEECCCCccceeChh
Confidence            55444                    3333 34455 78999999999998888888888885 99999999999888888


Q ss_pred             ccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCC
Q 047985          530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFP  609 (930)
Q Consensus       530 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  609 (930)
                      .+..+++|++|++++|++++..+..|.++++|+.|++++|++.+..+..|..+++|+.|++++|++.+.++...  ....
T Consensus       147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~  224 (477)
T 2id5_A          147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGL  224 (477)
T ss_dssp             SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTC
T ss_pred             hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCc
Confidence            88889999999999999988777788999999999999999999888888999999999999988877776654  3345


Q ss_pred             CceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEccc
Q 047985          610 KLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSS  689 (930)
Q Consensus       610 ~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  689 (930)
                      +|+.|++++|.++ .+|...+..                                              ++.|+.|+|++
T Consensus       225 ~L~~L~l~~n~l~-~~~~~~~~~----------------------------------------------l~~L~~L~Ls~  257 (477)
T 2id5_A          225 NLTSLSITHCNLT-AVPYLAVRH----------------------------------------------LVYLRFLNLSY  257 (477)
T ss_dssp             CCSEEEEESSCCC-SCCHHHHTT----------------------------------------------CTTCCEEECCS
T ss_pred             cccEEECcCCccc-ccCHHHhcC----------------------------------------------ccccCeeECCC
Confidence            8999999999887 556443332                                              34589999999


Q ss_pred             ccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCC
Q 047985          690 NRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIP  769 (930)
Q Consensus       690 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP  769 (930)
                      |.+++..+..|..+++|+.|+|++|++++..|..|+++++|+.|||++|++++..+..|..+++|++|++++|++.+..+
T Consensus       258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            99999888899999999999999999999999999999999999999999998888889999999999999999987544


Q ss_pred             CCCCcCccCCcccCCCCCCCCCC
Q 047985          770 QGKQFATFDKTSFDGNSGLCGRP  792 (930)
Q Consensus       770 ~~~~~~~~~~~s~~gn~~Lcg~~  792 (930)
                      ..-.+.......+.++...|..|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          338 LLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             GHHHHTTTTSSCCTTCCCBEEES
T ss_pred             hHhHHhhhhccccCccCceeCCc
Confidence            21111222334567777777655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=319.34  Aligned_cols=301  Identities=22%  Similarity=0.202  Sum_probs=140.6

Q ss_pred             CCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEcc
Q 047985          223 RLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLA  302 (930)
Q Consensus       223 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  302 (930)
                      +++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            44444555544444444444445555555555555544444445555555555555555544433444555555555555


Q ss_pred             CCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccc
Q 047985          303 SNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL  382 (930)
Q Consensus       303 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  382 (930)
                      +|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+ ..+ ..+++|+.|++++|.+..
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l-~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EAL-SHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHH-TTCTTCCEEEEESCCCCE
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHh-cccCCCcEEeCCCCcCcE
Confidence            555554444455555555555555555554444455555555555555554442211 111 112222222222211110


Q ss_pred             cccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCC
Q 047985          383 LTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPN  462 (930)
Q Consensus       383 ~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  462 (930)
                      ..                        +..+..+++|+.|++++|.+.+.+|                             
T Consensus       191 ~~------------------------~~~~~~l~~L~~L~l~~~~~~~~~~-----------------------------  217 (477)
T 2id5_A          191 IR------------------------DYSFKRLYRLKVLEISHWPYLDTMT-----------------------------  217 (477)
T ss_dssp             EC------------------------TTCSCSCTTCCEEEEECCTTCCEEC-----------------------------
T ss_pred             eC------------------------hhhcccCcccceeeCCCCccccccC-----------------------------
Confidence            00                        0112233444444444444333222                             


Q ss_pred             cceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEc
Q 047985          463 TVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDL  542 (930)
Q Consensus       463 l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  542 (930)
                                      ...... .+|+.|++++|++++..+..+..++. |+.|+|++|.+++..+..+..+++|+.|+|
T Consensus       218 ----------------~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (477)
T 2id5_A          218 ----------------PNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVY-LRFLNLSYNPISTIEGSMLHELLRLQEIQL  279 (477)
T ss_dssp             ----------------TTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTT-CCEEECCSSCCCEECTTSCTTCTTCCEEEC
T ss_pred             ----------------cccccC-ccccEEECcCCcccccCHHHhcCccc-cCeeECCCCcCCccChhhccccccCCEEEC
Confidence                            222222 34556666666555433344455543 555555555555444444555555555555


Q ss_pred             cCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCccc
Q 047985          543 SDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH  596 (930)
Q Consensus       543 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  596 (930)
                      ++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++.
T Consensus       280 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            555555555555555555555555555555554444444444444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=7.5e-33  Score=304.50  Aligned_cols=272  Identities=22%  Similarity=0.330  Sum_probs=143.9

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccceEecC--------CCCcEEEEEcC
Q 047985            5 LCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNE--------NTGHVIKLDLS   76 (930)
Q Consensus         5 ~c~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~--------~~~~v~~L~L~   76 (930)
                      .+..+|++||++||+++..++.+             .+++|........++|.|.|+.|+.        ..++|+.|+|+
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~-------------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~   89 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNR-------------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELR   89 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTT-------------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEE
T ss_pred             ccCchHHHHHHHHHHhccCCchh-------------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEcc
Confidence            35678999999999998644431             4578841111156899999999952        22455566666


Q ss_pred             CCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCC
Q 047985           77 SSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYY  156 (930)
Q Consensus        77 ~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~  156 (930)
                      ++.+. .+++  .++++++|++|+|++|.+.  .+|..++.+++|++|+|++|.++ .+|..++++++|++|++++|   
T Consensus        90 ~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n---  160 (328)
T 4fcg_A           90 SVPLP-QFPD--QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC---  160 (328)
T ss_dssp             SSCCS-SCCS--CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE---
T ss_pred             CCCch-hcCh--hhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC---
Confidence            55554 3333  4555555555555555554  24555555555555555555555 44555555555555555554   


Q ss_pred             CCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhcc---------CCCCCCEEEccCCCCCCCCcccccCCCCCcEE
Q 047985          157 DPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLT---------YLSSLTTLSLSGCDLRGRIPSSLGNITRLIHL  227 (930)
Q Consensus       157 ~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  227 (930)
                                                  ++.+.+|..+.         ++++|++|++++|.++ .+|..++++++|++|
T Consensus       161 ----------------------------~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L  211 (328)
T 4fcg_A          161 ----------------------------PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL  211 (328)
T ss_dssp             ----------------------------TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE
T ss_pred             ----------------------------CCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE
Confidence                                        33344443332         3444555555544444 344444444444444


Q ss_pred             EccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985          228 DLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS  307 (930)
Q Consensus       228 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  307 (930)
                      ++++|.+++                         +|..++.+++|++|+|++|.+.+.+|..+..+++|++|++++|.+.
T Consensus       212 ~L~~N~l~~-------------------------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          212 KIRNSPLSA-------------------------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             EEESSCCCC-------------------------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred             EccCCCCCc-------------------------CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence            444444443                         3333444444444444444444444444444455555555554444


Q ss_pred             CccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCC
Q 047985          308 GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN  352 (930)
Q Consensus       308 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  352 (930)
                      +.+|..+..+++|++|+|++|++.+.+|..++++++|+.+++..+
T Consensus       267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            444544555555555555555555555555555555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=1.6e-31  Score=302.21  Aligned_cols=349  Identities=19%  Similarity=0.141  Sum_probs=240.9

Q ss_pred             CCCCCCCCCCCCCCCCc-ccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCch-hccCC
Q 047985           41 KAASWKPEEGNNIDCCS-WDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPP-EIINL  118 (930)
Q Consensus        41 ~l~~W~~~~~~~~~~C~-w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~-~l~~l  118 (930)
                      .+++|..    +.+||. |.++.|....     +.+...........  .-..++++++|++++|.+..  +|. .+..+
T Consensus         2 ~~~~~~~----~~~C~~~~~~~~c~~~~-----~~i~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l   68 (390)
T 3o6n_A            2 NVKPRQP----EYKCIDSNLQYDCVFYD-----VHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSF   68 (390)
T ss_dssp             -----CC----EECBCC------EEEES-----CEECSSCCCCEESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHC
T ss_pred             CcCCCCC----ccceehhhhhhccceee-----eeeecccccccccc--cccccCCceEEEecCCchhh--CChhHhccc
Confidence            4678987    578875 5555553211     12222221111111  33467899999999998875  454 47889


Q ss_pred             CCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCC
Q 047985          119 SSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLS  198 (930)
Q Consensus       119 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  198 (930)
                      ++|++|+|++|.+.+..+..++.+++|++|++++|.+.       ...+..+.++++|++|++++|.++...+..+.+++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  141 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-------YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP  141 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-------cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCC
Confidence            99999999999999777778999999999999999542       22345567888888888888888866555678888


Q ss_pred             CCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 047985          199 SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS  278 (930)
Q Consensus       199 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  278 (930)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++.   .+..+++|++|++++|.+++     +...++|+.|+++
T Consensus       142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~  213 (390)
T 3o6n_A          142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDAS  213 (390)
T ss_dssp             TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECC
T ss_pred             CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECC
Confidence            888888888888877777788888888888888888765   24566788888888887763     2344678888888


Q ss_pred             CCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCC
Q 047985          279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKM  358 (930)
Q Consensus       279 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  358 (930)
                      +|.+... |..  ..++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..
T Consensus       214 ~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  288 (390)
T 3o6n_A          214 HNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN  288 (390)
T ss_dssp             SSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE
T ss_pred             CCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC
Confidence            8887654 332  246788888888888754  46777888888888888888777777888888888888888776421


Q ss_pred             chhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccC
Q 047985          359 DLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLD  438 (930)
Q Consensus       359 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~  438 (930)
                      . .  ...                         .++|+.|++++|.+..+|..+..+++|++|++++|++++. +  +. 
T Consensus       289 ~-~--~~~-------------------------l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~-  336 (390)
T 3o6n_A          289 L-Y--GQP-------------------------IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LS-  336 (390)
T ss_dssp             C-S--SSC-------------------------CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CC-
T ss_pred             c-c--cCC-------------------------CCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C--ch-
Confidence            1 1  022                         3445555555556666777777888889999998888754 2  22 


Q ss_pred             CCCCCceEEeccCccCc
Q 047985          439 PSMQNFGHLNLSHNFLT  455 (930)
Q Consensus       439 ~~l~~L~~L~Ls~N~l~  455 (930)
                       .+++|+.|++++|.++
T Consensus       337 -~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          337 -THHTLKNLTLSHNDWD  352 (390)
T ss_dssp             -TTCCCSEEECCSSCEE
T ss_pred             -hhccCCEEEcCCCCcc
Confidence             5677777777777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=2.8e-31  Score=300.21  Aligned_cols=131  Identities=24%  Similarity=0.238  Sum_probs=93.6

Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      ++|+.|++++|.+++.  ..+..++. |++|++++|.+++..|..+..+++|++|+|++|++++ +|..+..+++|++|+
T Consensus       226 ~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~  301 (390)
T 3o6n_A          226 VELTILKLQHNNLTDT--AWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD  301 (390)
T ss_dssp             SSCCEEECCSSCCCCC--GGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEE
T ss_pred             ccccEEECCCCCCccc--HHHcCCCC-ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEE
Confidence            4566666666666643  34555664 7777777777776667777777777777777777775 355566778888888


Q ss_pred             ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCC
Q 047985          566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLP  626 (930)
Q Consensus       566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  626 (930)
                      +++|++++. |..+..+++|++|+|++|+++...     ...+++|+.|++++|++.+...
T Consensus       302 L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          302 LSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             CCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CCCCcceec-CccccccCcCCEEECCCCccceeC-----chhhccCCEEEcCCCCccchhH
Confidence            888888754 556777888888888888887652     2567889999999999886433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=3e-31  Score=316.63  Aligned_cols=317  Identities=21%  Similarity=0.186  Sum_probs=213.8

Q ss_pred             CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985          197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD  276 (930)
Q Consensus       197 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  276 (930)
                      +.+++.|++++|.+....+..+.++++|++|++++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            46788888888887765555667777888888888887777666777777777777777777776666677777777777


Q ss_pred             ccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCC
Q 047985          277 LSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG  356 (930)
Q Consensus       277 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  356 (930)
                      |++|.+++..+..|+++++|++|+|++|.+++..|..++.+++|++|++++|.+++..   ++.+++|+.|++++|.+++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence            7777777555555677777777777777777666666666667777777666665431   3344555555555554432


Q ss_pred             CCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccc
Q 047985          357 KMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWL  436 (930)
Q Consensus       357 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~  436 (930)
                      .                                                       ...++|+.|++++|.+....+   
T Consensus       207 l-------------------------------------------------------~~~~~L~~L~ls~n~l~~~~~---  228 (597)
T 3oja_B          207 L-------------------------------------------------------AIPIAVEELDASHNSINVVRG---  228 (597)
T ss_dssp             E-------------------------------------------------------ECCTTCSEEECCSSCCCEEEC---
T ss_pred             c-------------------------------------------------------cCCchhheeeccCCccccccc---
Confidence            1                                                       112234555555554431111   


Q ss_pred             cCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCcee
Q 047985          437 LDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSIL  516 (930)
Q Consensus       437 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L  516 (930)
                                                             .++       ++|+.|++++|.+++.  ..+..++. |+.|
T Consensus       229 ---------------------------------------~~~-------~~L~~L~L~~n~l~~~--~~l~~l~~-L~~L  259 (597)
T 3oja_B          229 ---------------------------------------PVN-------VELTILKLQHNNLTDT--AWLLNYPG-LVEV  259 (597)
T ss_dssp             ---------------------------------------SCC-------SCCCEEECCSSCCCCC--GGGGGCTT-CSEE
T ss_pred             ---------------------------------------ccC-------CCCCEEECCCCCCCCC--hhhccCCC-CCEE
Confidence                                                   010       3466666666666652  45566664 7777


Q ss_pred             ecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCccc
Q 047985          517 DLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH  596 (930)
Q Consensus       517 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  596 (930)
                      +|++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|++++ +|..+..+++|+.|+|++|++.
T Consensus       260 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             ECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCC
T ss_pred             ECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCC
Confidence            777777777777777777777777777777775 35566677888888888888874 4666777888888888888887


Q ss_pred             ccCCCCCccCCCCCceEEECCCCcCcccCChHHH
Q 047985          597 GLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF  630 (930)
Q Consensus       597 ~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~  630 (930)
                      +..     ...+++|+.|++++|++++..+..++
T Consensus       338 ~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~  366 (597)
T 3oja_B          338 TLK-----LSTHHTLKNLTLSHNDWDCNSLRALF  366 (597)
T ss_dssp             CCC-----CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred             CcC-----hhhcCCCCEEEeeCCCCCChhHHHHH
Confidence            652     24578899999999999876444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=5.6e-31  Score=314.31  Aligned_cols=347  Identities=19%  Similarity=0.160  Sum_probs=252.0

Q ss_pred             CCCCCCCCCCCCCCCCc----ccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhcc
Q 047985           41 KAASWKPEEGNNIDCCS----WDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII  116 (930)
Q Consensus        41 ~l~~W~~~~~~~~~~C~----w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~  116 (930)
                      .+++|.+    +.+||.    |.++.|+.      .++.........+    .-..+.+++.|++++|.+... .+..+.
T Consensus         8 ~l~~~~~----~~~C~~~~~~~~c~~~~~------~i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~l-p~~~~~   72 (597)
T 3oja_B            8 NVKPRQP----EYKCIDSNLQYDCVFYDV------HIDMQTQDVYFGF----EDITLNNQKIVTFKNSTMRKL-PAALLD   72 (597)
T ss_dssp             ---CCCS----EECCCCC--CCSEEECSC------EECSSCCCCEESC----SSGGGCCCSEEEESSCEESEE-CTHHHH
T ss_pred             cccCCCC----CCcCcccCcCceeEecCc------eecccccccccCc----ccccCCCceEEEeeCCCCCCc-CHHHHc
Confidence            5789987    567774    66666642      1121111111111    233578999999999988753 334578


Q ss_pred             CCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccC
Q 047985          117 NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTY  196 (930)
Q Consensus       117 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  196 (930)
                      .+++|++|+|++|.+.+..|..++.+++|++|+|++|.+.       ...+..+.++++|++|++++|.+++..+..|++
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~  145 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-------YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN  145 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-------CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence            8999999999999999888888999999999999999542       223455678888999999998888776666788


Q ss_pred             CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985          197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD  276 (930)
Q Consensus       197 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  276 (930)
                      +++|++|+|++|.+++..|..++++++|++|++++|.+++..   ++.+++|+.|++++|.+++     +...++|+.|+
T Consensus       146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~  217 (597)
T 3oja_B          146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELD  217 (597)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEE
T ss_pred             CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheee
Confidence            889999999999888888888888888999999988887653   4567788888888888774     34456788888


Q ss_pred             ccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCC
Q 047985          277 LSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG  356 (930)
Q Consensus       277 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  356 (930)
                      +++|.+....+. +  .++|+.|+|++|.+++  +..+..+++|++|+|++|.+++..|..+..+++|+.|+|++|.+++
T Consensus       218 ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  292 (597)
T 3oja_B          218 ASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  292 (597)
T ss_dssp             CCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred             ccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence            888887654332 2  2578888888888876  3667888888888888888888888888888888888888888765


Q ss_pred             CCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccc
Q 047985          357 KMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWL  436 (930)
Q Consensus       357 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~  436 (930)
                      . +..  ...+                         ++|+.|++++|.+..+|..+..+++|+.|+|++|.+.+..   +
T Consensus       293 l-~~~--~~~l-------------------------~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---~  341 (597)
T 3oja_B          293 L-NLY--GQPI-------------------------PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---L  341 (597)
T ss_dssp             E-ECS--SSCC-------------------------TTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---C
T ss_pred             C-Ccc--cccC-------------------------CCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---h
Confidence            2 211  0223                         3455555555566667777788888888888888887542   1


Q ss_pred             cCCCCCCceEEeccCccCc
Q 047985          437 LDPSMQNFGHLNLSHNFLT  455 (930)
Q Consensus       437 ~~~~l~~L~~L~Ls~N~l~  455 (930)
                      .  .+++|+.|++++|.+.
T Consensus       342 ~--~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          342 S--THHTLKNLTLSHNDWD  358 (597)
T ss_dssp             C--TTCCCSEEECCSSCEE
T ss_pred             h--hcCCCCEEEeeCCCCC
Confidence            1  5567777777776554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.1e-29  Score=282.30  Aligned_cols=129  Identities=29%  Similarity=0.422  Sum_probs=56.9

Q ss_pred             ccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCc
Q 047985          218 LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLH  297 (930)
Q Consensus       218 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  297 (930)
                      +..+++|++|++++|.+++..+  +..+++|++|++++|.++. +| .+..+++|++|++++|.+.+..+  +..+++|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~  135 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP--LANLTKMY  135 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCC
T ss_pred             hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh--hccCCcee
Confidence            3334444444444444443222  4444444444444444442 12 34444444444444444443222  44444444


Q ss_pred             EEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCC
Q 047985          298 WLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS  355 (930)
Q Consensus       298 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  355 (930)
                      +|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus       136 ~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          136 SLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             EEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             EEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            44444443332222 24445555555555555443222  445555555555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=4.1e-29  Score=277.70  Aligned_cols=308  Identities=28%  Similarity=0.374  Sum_probs=186.4

Q ss_pred             cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985           89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN  168 (930)
Q Consensus        89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  168 (930)
                      .+..+++|++|+++++.+..  +| .+..+++|++|++++|.+++ +|. +..+++|++|++++|.+.        .+ .
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~--------~~-~  104 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT--------DI-S  104 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC--------CC-G
T ss_pred             cchhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc--------Cc-h
Confidence            34456666777777666653  33 36666677777777766663 333 666667777777666431        11 2


Q ss_pred             hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985          169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL  248 (930)
Q Consensus       169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  248 (930)
                      .+.++++|++|++++|.+.+..+  +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|
T Consensus       105 ~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L  179 (347)
T 4fmz_A          105 ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDL  179 (347)
T ss_dssp             GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred             HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCC
Confidence            35566666666666666655433  6666677777777665443333 36666677777777776665433  5666677


Q ss_pred             CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985          249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC  328 (930)
Q Consensus       249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  328 (930)
                      ++|++++|.+++..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|
T Consensus       180 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN  253 (347)
T ss_dssp             SEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence            777777776664322  6666677777777776665433  6666667777777776664433  666666777777777


Q ss_pred             cccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCc
Q 047985          329 KFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEI  408 (930)
Q Consensus       329 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~i  408 (930)
                      .+++.  +.+..+++|++|++++|.+++. +  . +..+++|+.|++++|++..                        ..
T Consensus       254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~--~-~~~l~~L~~L~L~~n~l~~------------------------~~  303 (347)
T 4fmz_A          254 QISDI--NAVKDLTKLKMLNVGSNQISDI-S--V-LNNLSQLNSLFLNNNQLGN------------------------ED  303 (347)
T ss_dssp             CCCCC--GGGTTCTTCCEEECCSSCCCCC-G--G-GGGCTTCSEEECCSSCCCG------------------------GG
T ss_pred             ccCCC--hhHhcCCCcCEEEccCCccCCC-h--h-hcCCCCCCEEECcCCcCCC------------------------cC
Confidence            66642  3466666677777776666543 1  1 1444555555555443221                        23


Q ss_pred             chhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCc
Q 047985          409 PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT  455 (930)
Q Consensus       409 p~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~  455 (930)
                      |..+..+++|++|++++|++++..|  +.  .+++|+.|++++|.++
T Consensus       304 ~~~l~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          304 MEVIGGLTNLTTLFLSQNHITDIRP--LA--SLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHHHTCTTCSEEECCSSSCCCCGG--GG--GCTTCSEESSSCC---
T ss_pred             hhHhhccccCCEEEccCCccccccC--hh--hhhccceeehhhhccc
Confidence            4556777788888888888776655  22  5677777777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6e-33  Score=321.46  Aligned_cols=59  Identities=19%  Similarity=0.259  Sum_probs=26.0

Q ss_pred             CCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCc----cCCccccCCCCCcEEEccCC
Q 047985           95 HLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSG----QIPSEILELSKLAYLDLSHN  153 (930)
Q Consensus        95 ~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n  153 (930)
                      +|++|||++|.++.......+..+++|++|+|++|.+++    .++..+..+++|++|++++|
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n   66 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN   66 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC
Confidence            344444444444332122224444555555555555442    22333444455555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.3e-32  Score=318.71  Aligned_cols=147  Identities=20%  Similarity=0.112  Sum_probs=98.3

Q ss_pred             CchHHhhcccccceeecccccccCcCccccccc-----ccCCceeecCCCccccc----cCcccCCCCCccEEEccCccc
Q 047985          477 IPSWICNLSNRLESLDLSYNNLSGLLPQCLGNF-----SDWLSILDLQHNKFSGT----IPDNLLKGNILKVIDLSDNLL  547 (930)
Q Consensus       477 ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~-----~~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l  547 (930)
                      ++..+..+ ++|++|++++|.+++..+..+...     + .|++|++++|.+++.    ++..+..+++|++|++++|.+
T Consensus       276 l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  353 (461)
T 1z7x_W          276 LCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGC-QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL  353 (461)
T ss_dssp             HHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCc-cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence            45555555 677788888877765444333322     3 388888888887754    455566678888888888888


Q ss_pred             cccCCccccC-----CCCCcEecccCccccc----cCcccccCCCCCcEEEccCCcccccCCCCCc---cCCCCCceEEE
Q 047985          548 QGRIPRSLAN-----CSNLEFLDLGDNQIRD----IFPSWLGTLPDLNVLILKSNKFHGLIREPKT---DCGFPKLRIID  615 (930)
Q Consensus       548 ~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~---~~~l~~L~~Ld  615 (930)
                      ++..+..+..     .++|++|++++|++++    .+|..+..+++|++|+|++|++++.....+.   .....+|+.|+
T Consensus       354 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~  433 (461)
T 1z7x_W          354 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV  433 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhhee
Confidence            7655544432     6788888888888886    6777788888888888888888754111110   01234688888


Q ss_pred             CCCCcCcccC
Q 047985          616 LSKNRFTGKL  625 (930)
Q Consensus       616 Ls~N~l~g~i  625 (930)
                      +.++.+....
T Consensus       434 ~~~~~~~~~~  443 (461)
T 1z7x_W          434 LYDIYWSEEM  443 (461)
T ss_dssp             CTTCCCCHHH
T ss_pred             ecccccCHHH
Confidence            8887776433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.6e-28  Score=268.09  Aligned_cols=106  Identities=24%  Similarity=0.338  Sum_probs=56.4

Q ss_pred             CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecc
Q 047985          247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY  326 (930)
Q Consensus       247 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  326 (930)
                      .|++|++++|.+++..+..|+++++|++|+|++|++++..|..|.++++|++|++++|.++ .+|..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence            4444444444444433334445555555555555555444555555555555555555554 2333332  456666666


Q ss_pred             cccccCCCcccccCCCCCCEEEccCCCCC
Q 047985          327 ECKFSGQIPSSLSNLTHLSFLDFSLNNFS  355 (930)
Q Consensus       327 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  355 (930)
                      +|.+++..+..+..+++|++|++++|.+.
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCC
Confidence            66666555555666666666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=5e-28  Score=266.91  Aligned_cols=269  Identities=20%  Similarity=0.198  Sum_probs=217.3

Q ss_pred             CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCC
Q 047985           94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL  173 (930)
Q Consensus        94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l  173 (930)
                      ++|++|+|++|.+++. .+..++++++|++|+|++|.+++..|..++++++|++|++++|.+.        .+|..+  .
T Consensus        52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------~l~~~~--~  120 (330)
T 1xku_A           52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK--------ELPEKM--P  120 (330)
T ss_dssp             TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS--------BCCSSC--C
T ss_pred             CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC--------ccChhh--c
Confidence            6899999999999864 4557999999999999999999888999999999999999999652        223222  2


Q ss_pred             CCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCC--CCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEE
Q 047985          174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG--RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL  251 (930)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  251 (930)
                      ++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+.++++|++|++++|.++. +|..+.  ++|++|
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L  197 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTEL  197 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEE
T ss_pred             ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEE
Confidence            789999999999998888889999999999999998863  667788899999999999999875 344333  789999


Q ss_pred             EccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeeccccccc
Q 047985          252 DLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFS  331 (930)
Q Consensus       252 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~  331 (930)
                      ++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus       198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            99999998877888999999999999999998877778889999999999999988 67888888999999999999998


Q ss_pred             CCCcccccC------CCCCCEEEccCCCCCC-CCchhHHhhccccccEEEccCC
Q 047985          332 GQIPSSLSN------LTHLSFLDFSLNNFSG-KMDLDIFLVNHKLLYHLFLSTN  378 (930)
Q Consensus       332 ~~~p~~l~~------l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~L~~L~Ls~n  378 (930)
                      +..+..|..      .+.++.|++++|++.. .++...+ ..+..++.+++++|
T Consensus       277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f-~~~~~l~~l~L~~N  329 (330)
T 1xku_A          277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG-TTCCCGGGEEC---
T ss_pred             ccChhhcCCcccccccccccceEeecCcccccccCcccc-ccccceeEEEeccc
Confidence            766655543      3677888888888753 2333333 56677777777766

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=3.9e-28  Score=267.95  Aligned_cols=126  Identities=21%  Similarity=0.297  Sum_probs=66.7

Q ss_pred             CCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 047985          199 SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS  278 (930)
Q Consensus       199 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  278 (930)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+++..|..+.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4566666666555 3444332  455666666666555555555555666666666665555555555555555555555


Q ss_pred             CCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccc
Q 047985          279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF  330 (930)
Q Consensus       279 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l  330 (930)
                      +|+++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            55554 2333322  4555555555555544333444444444444444444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=4.7e-28  Score=267.30  Aligned_cols=132  Identities=22%  Similarity=0.182  Sum_probs=69.7

Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      ++|++|++++|.+++..|..+..++. |++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  270 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSK-LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY  270 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTT-CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCC-CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence            34556666666666555555555553 666666666666555555555566666666666665 4455555666666666


Q ss_pred             ccCccccccCcccccC------CCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCC
Q 047985          566 LGDNQIRDIFPSWLGT------LPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKN  619 (930)
Q Consensus       566 Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N  619 (930)
                      +++|++++..+..|..      .+.|+.|++++|++......+..+..++.|+.+++++|
T Consensus       271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             CCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            6666666555544443      23455555555555421111122234555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=6.2e-31  Score=314.67  Aligned_cols=465  Identities=15%  Similarity=0.141  Sum_probs=229.0

Q ss_pred             CCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCC--CCCchhc------------cCCC
Q 047985           54 DCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDG--SEIPPEI------------INLS  119 (930)
Q Consensus        54 ~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~--~~ip~~l------------~~l~  119 (930)
                      -|++|.++.+...    ..+.+.+. ......  ..+.++++|++|+|+++....  ..+|..+            ..++
T Consensus        40 vck~W~~~~~~~~----~~l~~~~~-~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  112 (592)
T 3ogk_B           40 VCRRWFKIDSETR----EHVTMALC-YTATPD--RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR  112 (592)
T ss_dssp             SCHHHHHHHHHHC----CEEEESCG-GGSCHH--HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HhHHHHHhhhccc----cEEEEeec-cccChH--HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence            3458999965321    22333322 122222  256678999999998753210  0122222            2678


Q ss_pred             CCCEEEccCCCCCccCCccccCC-C-CCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCC----Cchh
Q 047985          120 SLSYLNLSSAAFSGQIPSEILEL-S-KLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSP----IPHN  193 (930)
Q Consensus       120 ~L~~L~Ls~n~l~~~~p~~l~~l-~-~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~----~~~~  193 (930)
                      +|++|+|++|.+++..+..++.. + +|++|++++|.     .+....++....++++|++|++++|.+++.    ++..
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  187 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-----GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL  187 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE-----EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC-----CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence            88888888888877666666553 3 48888888773     111223444455677777777777766544    2223


Q ss_pred             ccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCC
Q 047985          194 LTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE  273 (930)
Q Consensus       194 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  273 (930)
                      ...+++|++|++++|.+++...                    +.++..+.++++|++|++++|.+.+ +|..+..+++|+
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~--------------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~  246 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISP--------------------KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLE  246 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCH--------------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCC
T ss_pred             HhcCCCccEEEeeccCCCccCH--------------------HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHH
Confidence            3444555555555555542111                    1223333444555555555555443 444555555555


Q ss_pred             EEEccCCCCC---CCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCc-ccccCCCCCCEEEc
Q 047985          274 QVDLSLNRFL---GKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP-SSLSNLTHLSFLDF  349 (930)
Q Consensus       274 ~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L  349 (930)
                      +|+++.....   +..+..+..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|++
T Consensus       247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L  325 (592)
T 3ogk_B          247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET  325 (592)
T ss_dssp             EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred             hhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence            5555432211   1223445555666666666542 23455555666666666666666543322 23456666777766


Q ss_pred             cCCCCCCCCchhHHhhccccccEEEccC-----------CcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCc
Q 047985          350 SLNNFSGKMDLDIFLVNHKLLYHLFLST-----------NRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHL  418 (930)
Q Consensus       350 s~n~l~~~~~~~~~~~~~~~L~~L~Ls~-----------n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L  418 (930)
                      + +.+.... ...+...+++|++|++++           +.+...                       .++.....+++|
T Consensus       326 ~-~~~~~~~-l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~~L  380 (592)
T 3ogk_B          326 R-NVIGDRG-LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-----------------------GLIALAQGCQEL  380 (592)
T ss_dssp             E-GGGHHHH-HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----------------------HHHHHHHHCTTC
T ss_pred             c-CccCHHH-HHHHHHhCCCCCEEEeecCccccccccccCccCHH-----------------------HHHHHHhhCccC
Confidence            6 3322111 112224455666666652           111100                       122233446666


Q ss_pred             CEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCC-----CchHHhhcccccceeec
Q 047985          419 ELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGE-----IPSWICNLSNRLESLDL  493 (930)
Q Consensus       419 ~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~-----ip~~~~~~~~~L~~L~L  493 (930)
                      ++|+++.|.+++..+..+.. .+++|+.|+++.+.               ..|.+++.     ++..+..+ ++|+.|++
T Consensus       381 ~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~---------------~~n~l~~~p~~~~~~~~~~~~-~~L~~L~L  443 (592)
T 3ogk_B          381 EYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLD---------------REERITDLPLDNGVRSLLIGC-KKLRRFAF  443 (592)
T ss_dssp             SEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECS---------------CCSCCSSCCCHHHHHHHHHHC-TTCCEEEE
T ss_pred             eEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecC---------------CCccccCchHHHHHHHHHHhC-CCCCEEEE
Confidence            66666655555433333220 13444444443110               01222221     22223333 45555555


Q ss_pred             cccc--ccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccc-cCCccccCCCCCcEecccCcc
Q 047985          494 SYNN--LSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQG-RIPRSLANCSNLEFLDLGDNQ  570 (930)
Q Consensus       494 s~N~--l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~  570 (930)
                      ++|.  +++..+..+..                        .+++|++|++++|++++ .++..+..+++|++|+|++|.
T Consensus       444 ~~~~~~l~~~~~~~~~~------------------------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          444 YLRQGGLTDLGLSYIGQ------------------------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             ECCGGGCCHHHHHHHHH------------------------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             ecCCCCccHHHHHHHHH------------------------hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence            4322  33332222222                        13445555555555544 223334556666666666666


Q ss_pred             cccc-CcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCC
Q 047985          571 IRDI-FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKN  619 (930)
Q Consensus       571 l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N  619 (930)
                      +++. ++..+..+++|++|+|++|+++........ ..++.+....+..+
T Consensus       500 l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          500 FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPYWNIELIPSR  548 (592)
T ss_dssp             CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTTEEEEEECCC
T ss_pred             CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCCcEEEEecCc
Confidence            6544 233334566666666666666544222221 24566665555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.4e-28  Score=268.15  Aligned_cols=282  Identities=18%  Similarity=0.182  Sum_probs=232.0

Q ss_pred             CCCCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCC
Q 047985           52 NIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF  131 (930)
Q Consensus        52 ~~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l  131 (930)
                      ...+|.|.|+ |+          ++++.++. ++.  .+  .++|++|++++|.+++. .+..+.++++|++|+|++|.+
T Consensus        26 ~~~~C~~~~~-c~----------~~~~~l~~-iP~--~~--~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l   88 (353)
T 2z80_A           26 ASLSCDRNGI-CK----------GSSGSLNS-IPS--GL--TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGI   88 (353)
T ss_dssp             -CCEECTTSE-EE----------CCSTTCSS-CCT--TC--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCCCCCCeE-ee----------CCCCCccc-ccc--cc--cccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCcc
Confidence            4567999998 74          34555542 332  23  25899999999999864 344799999999999999999


Q ss_pred             CccCCccccCCCCCcEEEccCCCCCCCccccCCchh-hhhhCCCCCCEEEcCCccCCCCCc-hhccCCCCCCEEEccCC-
Q 047985          132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLG-NLADKLTNLKELVLGDVTISSPIP-HNLTYLSSLTTLSLSGC-  208 (930)
Q Consensus       132 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n-  208 (930)
                      ++..|..++++++|++|++++|.+        ..++ ..+.++++|++|++++|.+++..+ ..+.++++|++|++++| 
T Consensus        89 ~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A           89 NTIEEDSFSSLGSLEHLDLSYNYL--------SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCC--------SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CccCHhhcCCCCCCCEEECCCCcC--------CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence            988888899999999999999965        2333 448899999999999999987555 57899999999999999 


Q ss_pred             CCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCC
Q 047985          209 DLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPS  288 (930)
Q Consensus       209 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  288 (930)
                      .+....+..+.++++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|++++..+.
T Consensus       161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  240 (353)
T 2z80_A          161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS  240 (353)
T ss_dssp             SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred             cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence            47766678899999999999999999998899999999999999999999744334456789999999999999876655


Q ss_pred             CCC---CCcCCcEEEccCCCCCC----ccCcccccccccceeecccccccCCCccc-ccCCCCCCEEEccCCCCCCCCc
Q 047985          289 SLG---NLTQLHWLSLASNDFSG----ELPASFGNLRSLRTLDVYECKFSGQIPSS-LSNLTHLSFLDFSLNNFSGKMD  359 (930)
Q Consensus       289 ~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~  359 (930)
                      .+.   ..+.++.++++++.+++    .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..+
T Consensus       241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            443   46778999999999886    46778889999999999999998 45555 5889999999999999998765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=2.3e-28  Score=267.12  Aligned_cols=248  Identities=22%  Similarity=0.247  Sum_probs=206.8

Q ss_pred             CcceEEeccCcCCCCCchHHhhcccccceeecccccc-cCcCccccc-------ccccCCceeecCCCccccccCccc--
Q 047985          462 NTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNL-SGLLPQCLG-------NFSDWLSILDLQHNKFSGTIPDNL--  531 (930)
Q Consensus       462 ~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l-~~~~p~~l~-------~~~~~L~~L~Ls~N~l~~~~p~~~--  531 (930)
                      +++.+++++|.+  .+|..+...   |+.|++++|++ .+.+|..+.       .+++ |++|+|++|++++.+|..+  
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC-CCEEEEEEEBCBSCCCCCSSS
T ss_pred             CceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCC-ccEEEccCCcccchhHHHHHH
Confidence            456667777777  788877654   89999999999 456776655       5775 9999999999999999886  


Q ss_pred             CCCCCccEEEccCccccccCCccccCC-----CCCcEecccCccccccCcccccCCCCCcEEEccCCcccccC--CCCCc
Q 047985          532 LKGNILKVIDLSDNLLQGRIPRSLANC-----SNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLI--REPKT  604 (930)
Q Consensus       532 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~--~~~~~  604 (930)
                      ..+++|++|+|++|++++. |..+..+     ++|++|++++|++++..|..|+.+++|++|+|++|++.+.+  +....
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            8899999999999999987 8877776     99999999999999999999999999999999999987753  22333


Q ss_pred             cCCCCCceEEECCCCcCcc--cCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccc
Q 047985          605 DCGFPKLRIIDLSKNRFTG--KLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDIL  682 (930)
Q Consensus       605 ~~~l~~L~~LdLs~N~l~g--~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  682 (930)
                      +..+++|++|++++|++++  .++...+.                                              ..+.|
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~----------------------------------------------~l~~L  230 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAA----------------------------------------------ARVQL  230 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHH----------------------------------------------TTCCC
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHh----------------------------------------------cCCCC
Confidence            3678999999999999973  22222111                                              13458


Q ss_pred             cEEEcccccccccCc-hhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCC
Q 047985          683 TAVILSSNRFDGEIP-TSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSD  761 (930)
Q Consensus       683 ~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~  761 (930)
                      +.|+|++|++++.+| ..+..+++|+.|+|++|+++ .+|..+.  ++|+.|||++|++++. |. +..+++|++|++++
T Consensus       231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKG  305 (312)
T ss_dssp             SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred             CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence            999999999999886 55677899999999999999 8898887  8999999999999987 66 89999999999999


Q ss_pred             Cccccc
Q 047985          762 NHFTGP  767 (930)
Q Consensus       762 N~L~g~  767 (930)
                      |+++++
T Consensus       306 N~l~~~  311 (312)
T 1wwl_A          306 NPFLDS  311 (312)
T ss_dssp             CTTTCC
T ss_pred             CCCCCC
Confidence            999863

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.2e-27  Score=258.78  Aligned_cols=251  Identities=24%  Similarity=0.307  Sum_probs=171.7

Q ss_pred             CcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCch-hccCCCCCCEEEccCCCCC--
Q 047985           56 CSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPP-EIINLSSLSYLNLSSAAFS--  132 (930)
Q Consensus        56 C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~-~l~~l~~L~~L~Ls~n~l~--  132 (930)
                      |.|++|.|...            .++ .++.  .+  .++|++|+|++|.++.  +|. .+.++++|++|+|++|.++  
T Consensus         7 C~~~~l~c~~~------------~l~-~ip~--~~--~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~   67 (306)
T 2z66_A            7 CSGTEIRCNSK------------GLT-SVPT--GI--PSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFK   67 (306)
T ss_dssp             EETTEEECCSS------------CCS-SCCS--CC--CTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred             eCCCEEEcCCC------------Ccc-cCCC--CC--CCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcc
Confidence            89999999643            121 1111  11  2467777777777763  443 3567777777777777766  


Q ss_pred             ccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCc-hhccCCCCCCEEEccCCCCC
Q 047985          133 GQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP-HNLTYLSSLTTLSLSGCDLR  211 (930)
Q Consensus       133 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~  211 (930)
                      +..|..+..+++|++|++++|.+        ..++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus        68 ~~~~~~~~~~~~L~~L~Ls~n~i--------~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  139 (306)
T 2z66_A           68 GCCSQSDFGTTSLKYLDLSFNGV--------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  139 (306)
T ss_dssp             EEEEHHHHSCSCCCEEECCSCSE--------EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred             cCcccccccccccCEEECCCCcc--------ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC
Confidence            22355566677777777777743        2344556667777777777777766554 56677777777777777777


Q ss_pred             CCCcccccCCCCCcEEEccCCCCCC-chhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCC
Q 047985          212 GRIPSSLGNITRLIHLDLSFNKLSD-ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSL  290 (930)
Q Consensus       212 ~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l  290 (930)
                      +..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+
T Consensus       140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  219 (306)
T 2z66_A          140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  219 (306)
T ss_dssp             ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred             ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence            6666677777777777777777765 456667777777777777777776667777777777777777777776666667


Q ss_pred             CCCcCCcEEEccCCCCCCccCccccccc-ccceeecccccccCC
Q 047985          291 GNLTQLHWLSLASNDFSGELPASFGNLR-SLRTLDVYECKFSGQ  333 (930)
Q Consensus       291 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~  333 (930)
                      ..+++|++|++++|.+++..|..+..++ +|++|++++|.+++.
T Consensus       220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            7777777777777777777777777763 777777777777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=7.1e-29  Score=296.78  Aligned_cols=391  Identities=14%  Similarity=0.127  Sum_probs=256.9

Q ss_pred             hhhhhCCCCCCEEEcCCccCCCCCchhccCC-C-CCCEEEccCCC-CCC-CCcccccCCCCCcEEEccCCCCCCc----h
Q 047985          167 GNLADKLTNLKELVLGDVTISSPIPHNLTYL-S-SLTTLSLSGCD-LRG-RIPSSLGNITRLIHLDLSFNKLSDE----L  238 (930)
Q Consensus       167 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~-~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~----~  238 (930)
                      +.....+++|++|++++|.+++..+..+... + +|++|+|++|. ++. .++....++++|++|++++|.+++.    +
T Consensus       105 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l  184 (592)
T 3ogk_B          105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL  184 (592)
T ss_dssp             HHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred             HHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence            3444578888888888887777666666553 3 48888888876 211 1222234778899999998887665    5


Q ss_pred             hhhhcCCCCCCEEEccCCCCCC----CcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCC---CccC
Q 047985          239 PTFIGTLGSLKELDLLQNNLSG----ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS---GELP  311 (930)
Q Consensus       239 p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~---~~~p  311 (930)
                      +..+..+++|++|++++|.+++    .++..+.++++|++|++++|.+.+ +|..+.++++|++|+++.....   +..+
T Consensus       185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  263 (592)
T 3ogk_B          185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY  263 (592)
T ss_dssp             HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred             HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHH
Confidence            5566778899999999998873    445556788999999999988775 5677888889999998864332   2344


Q ss_pred             cccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCC
Q 047985          312 ASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTT  391 (930)
Q Consensus       312 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  391 (930)
                      ..+..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++..... ....+++|+.|+++++ +...        
T Consensus       264 ~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~-~~~~~~~L~~L~L~~~-~~~~--------  332 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCT-LIQKCPNLEVLETRNV-IGDR--------  332 (592)
T ss_dssp             SCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHH-HHTTCTTCCEEEEEGG-GHHH--------
T ss_pred             HHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHH-HHHhCcCCCEEeccCc-cCHH--------
Confidence            566777888888887753 3456677777888888888888755332222 2256666666666622 1110        


Q ss_pred             ccccceeeeccCCCCCcchhhhcCCCcCEEeCCC---CCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEe
Q 047985          392 SHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLAS---NKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLV  468 (930)
Q Consensus       392 ~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~---N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~l  468 (930)
                                     .++.....+++|++|++++   +....    .    .          .                 
T Consensus       333 ---------------~l~~~~~~~~~L~~L~L~~g~~~~~~~----~----~----------~-----------------  362 (592)
T 3ogk_B          333 ---------------GLEVLAQYCKQLKRLRIERGADEQGME----D----E----------E-----------------  362 (592)
T ss_dssp             ---------------HHHHHHHHCTTCCEEEEECCCCSSTTS----S----T----------T-----------------
T ss_pred             ---------------HHHHHHHhCCCCCEEEeecCccccccc----c----c----------c-----------------
Confidence                           2333445566777777763   00000    0    0          0                 


Q ss_pred             ccCcCCCC-CchHHhhcccccceeecccccccCcCcccccc-cccCCceeecC----CCccccc-----cCcccCCCCCc
Q 047985          469 SNNSLTGE-IPSWICNLSNRLESLDLSYNNLSGLLPQCLGN-FSDWLSILDLQ----HNKFSGT-----IPDNLLKGNIL  537 (930)
Q Consensus       469 s~n~l~g~-ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~-~~~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L  537 (930)
                        +.+++. ++.....+ ++|++|+++.|++++..+..+.. +++ |+.|+++    .|.+++.     ++..+..+++|
T Consensus       363 --~~~~~~~~~~l~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~-L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L  438 (592)
T 3ogk_B          363 --GLVSQRGLIALAQGC-QELEYMAVYVSDITNESLESIGTYLKN-LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL  438 (592)
T ss_dssp             --CCCCHHHHHHHHHHC-TTCSEEEEEESCCCHHHHHHHHHHCCS-CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred             --CccCHHHHHHHHhhC-ccCeEEEeecCCccHHHHHHHHhhCCC-CcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence              111111 11112223 66777777777776665555554 553 7777774    5666642     33345667889


Q ss_pred             cEEEccCcc--ccccCCccc-cCCCCCcEecccCcccccc-CcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceE
Q 047985          538 KVIDLSDNL--LQGRIPRSL-ANCSNLEFLDLGDNQIRDI-FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRI  613 (930)
Q Consensus       538 ~~L~Ls~N~--l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  613 (930)
                      ++|+++.|.  +++..+..+ ..+++|+.|++++|++++. ++..+..+++|++|+|++|++++...... ...+++|+.
T Consensus       439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~  517 (592)
T 3ogk_B          439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA-VTKLPSLRY  517 (592)
T ss_dssp             CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH-HHHCSSCCE
T ss_pred             CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH-HHhcCccCe
Confidence            999997543  666555444 3489999999999999874 55667889999999999999865422221 135789999


Q ss_pred             EECCCCcCccc
Q 047985          614 IDLSKNRFTGK  624 (930)
Q Consensus       614 LdLs~N~l~g~  624 (930)
                      |+|++|++++.
T Consensus       518 L~ls~n~it~~  528 (592)
T 3ogk_B          518 LWVQGYRASMT  528 (592)
T ss_dssp             EEEESCBCCTT
T ss_pred             eECcCCcCCHH
Confidence            99999999865

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.2e-26  Score=254.88  Aligned_cols=283  Identities=20%  Similarity=0.278  Sum_probs=212.4

Q ss_pred             CCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCCcccc----cCcccccCCCCCCEEECCCCCCCCCCCchhcc
Q 047985           41 KAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSI----NSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII  116 (930)
Q Consensus        41 ~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~----~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~  116 (930)
                      ++..|+...  ..|+|.|.++.|....+.     -..+...|..    +....-...+++++|+|++|.+.  .+|..++
T Consensus        31 aLl~~k~~~--~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~--~lp~~l~  101 (328)
T 4fcg_A           31 VLSQWQRHY--NADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP--QFPDQAF  101 (328)
T ss_dssp             HHHHHHHHH--HHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS--SCCSCGG
T ss_pred             HHHHHHHhc--cCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCch--hcChhhh
Confidence            466776410  247899999998432110     0111222210    00001123467777777777776  3676777


Q ss_pred             CCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccC
Q 047985          117 NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTY  196 (930)
Q Consensus       117 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  196 (930)
                      ++++|++|+|++|.++ .+|..++++++|++|++++|                               .++ .+|..+++
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-------------------------------~l~-~lp~~l~~  148 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-------------------------------PLR-ALPASIAS  148 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-------------------------------CCC-CCCGGGGG
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-------------------------------ccc-cCcHHHhc
Confidence            7777777777777777 67766777777777666666                               333 45667777


Q ss_pred             CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985          197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD  276 (930)
Q Consensus       197 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  276 (930)
                      +++|++|++++|++.+.+|..+...      .         .+..+..+++|++|++++|.++ .+|..++.+++|++|+
T Consensus       149 l~~L~~L~L~~n~~~~~~p~~~~~~------~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~  212 (328)
T 4fcg_A          149 LNRLRELSIRACPELTELPEPLAST------D---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK  212 (328)
T ss_dssp             CTTCCEEEEEEETTCCCCCSCSEEE------C----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEE
T ss_pred             CcCCCEEECCCCCCccccChhHhhc------c---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEE
Confidence            8888888888887777777655431      1         1223567899999999999998 8899999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCC
Q 047985          277 LSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG  356 (930)
Q Consensus       277 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  356 (930)
                      |++|++++ +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|..+..+++|++|++++|++.+
T Consensus       213 L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          213 IRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             EESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred             ccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence            99999985 66679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHhhccccccEEEccCCcccccc
Q 047985          357 KMDLDIFLVNHKLLYHLFLSTNRLSLLT  384 (930)
Q Consensus       357 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  384 (930)
                      .+|...  .++++|+.+++..+.+....
T Consensus       292 ~iP~~l--~~L~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          292 RLPSLI--AQLPANCIILVPPHLQAQLD  317 (328)
T ss_dssp             CCCGGG--GGSCTTCEEECCGGGSCC--
T ss_pred             hccHHH--hhccCceEEeCCHHHHHHHh
Confidence            999654  78999999999988654443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.5e-26  Score=252.18  Aligned_cols=257  Identities=23%  Similarity=0.269  Sum_probs=223.2

Q ss_pred             CEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCC
Q 047985           97 EWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL  176 (930)
Q Consensus        97 ~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L  176 (930)
                      +.++++++.++.  +|..+.  ++|++|+|++|.++...+..++++++|++|++++|.+..     .+..+..+..+++|
T Consensus        10 ~~l~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~~~~L   80 (306)
T 2z66_A           10 TEIRCNSKGLTS--VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF-----KGCCSQSDFGTTSL   80 (306)
T ss_dssp             TEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE-----EEEEEHHHHSCSCC
T ss_pred             CEEEcCCCCccc--CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc-----ccCccccccccccc
Confidence            578888888864  566443  799999999999995444457999999999999996421     12235667789999


Q ss_pred             CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCc-ccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccC
Q 047985          177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIP-SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQ  255 (930)
Q Consensus       177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  255 (930)
                      ++|++++|.+.. +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        81 ~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  159 (306)
T 2z66_A           81 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG  159 (306)
T ss_dssp             CEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence            999999999875 66778999999999999999987655 5789999999999999999988899999999999999999


Q ss_pred             CCCCC-CcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCC
Q 047985          256 NNLSG-ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI  334 (930)
Q Consensus       256 n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  334 (930)
                      |.+++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus       160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  239 (306)
T 2z66_A          160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK  239 (306)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred             CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence            99987 57889999999999999999999888999999999999999999999887778999999999999999999999


Q ss_pred             cccccCCC-CCCEEEccCCCCCCCCchhHH
Q 047985          335 PSSLSNLT-HLSFLDFSLNNFSGKMDLDIF  363 (930)
Q Consensus       335 p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~  363 (930)
                      |..+..++ +|++|++++|++++..+...+
T Consensus       240 ~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~  269 (306)
T 2z66_A          240 KQELQHFPSSLAFLNLTQNDFACTCEHQSF  269 (306)
T ss_dssp             SSSCCCCCTTCCEEECTTCCEECSGGGHHH
T ss_pred             HHHHHhhhccCCEEEccCCCeecccChHHH
Confidence            99999984 999999999999987665444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=7.1e-27  Score=260.21  Aligned_cols=280  Identities=16%  Similarity=0.186  Sum_probs=211.1

Q ss_pred             CCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecc
Q 047985          415 QHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLS  494 (930)
Q Consensus       415 ~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls  494 (930)
                      |+.....+++++.++ .+|..+.    ++|++|++++|++                   ++..+..+..+ ++|++|+++
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~----~~L~~L~l~~n~i-------------------~~~~~~~~~~l-~~L~~L~L~   84 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT----EAVKSLDLSNNRI-------------------TYISNSDLQRC-VNLQALVLT   84 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC----TTCCEEECTTSCC-------------------CEECTTTTTTC-TTCCEEECT
T ss_pred             CCCCeEeeCCCCCcc-ccccccc----ccCcEEECCCCcC-------------------cccCHHHhccC-CCCCEEECC
Confidence            444455666666665 3444332    3555555555544                   43333355556 789999999


Q ss_pred             cccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCC-ccccCCCCCcEecccCc-ccc
Q 047985          495 YNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIP-RSLANCSNLEFLDLGDN-QIR  572 (930)
Q Consensus       495 ~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N-~l~  572 (930)
                      +|++++..|..+..+++ |++|++++|++++..+..+..+++|++|++++|++++..+ ..+.++++|++|++++| .+.
T Consensus        85 ~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A           85 SNGINTIEEDSFSSLGS-LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             TSCCCEECTTTTTTCTT-CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             CCccCccCHhhcCCCCC-CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence            99988877888888885 9999999999886555558888899999999999886544 47888999999999988 577


Q ss_pred             ccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccccccccccc
Q 047985          573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIP  652 (930)
Q Consensus       573 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~  652 (930)
                      +..+..+..+++|++|++++|++.+..|..+  ..+++|++|++++|.++ .+|...+..                    
T Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~-~~~~~~~~~--------------------  220 (353)
T 2z80_A          164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQHI-LLLEIFVDV--------------------  220 (353)
T ss_dssp             EECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECSCST-THHHHHHHH--------------------
T ss_pred             ccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCCccc-cchhhhhhh--------------------
Confidence            7777888889999999999999888876665  67888999999999875 444332221                    


Q ss_pred             CCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcc---cccccceeeccCccccc----cCccccc
Q 047985          653 FNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSIS---NLKGLQILSLADNSLHG----HIPSCLG  725 (930)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g----~ip~~l~  725 (930)
                                                ++.|+.|++++|.+++..+..+.   ....++.++|++|.+++    .+|..++
T Consensus       221 --------------------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~  274 (353)
T 2z80_A          221 --------------------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN  274 (353)
T ss_dssp             --------------------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred             --------------------------cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence                                      34588899999999877665543   35677888888888877    5788899


Q ss_pred             ccCCCCeeeCCCCcCcccCCcc-ccCCCCCCeeecCCCcccccCCC
Q 047985          726 NLTDLESLDLSNNRFSGQIPQQ-LVELTFLEFFNVSDNHFTGPIPQ  770 (930)
Q Consensus       726 ~L~~L~~LdLs~N~lsg~ip~~-l~~L~~L~~L~ls~N~L~g~iP~  770 (930)
                      ++++|+.|||++|+++ .+|.. |..+++|++|++++|++.+..|.
T Consensus       275 ~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          275 QISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            9999999999999999 56666 58999999999999999987773

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=8.1e-26  Score=260.47  Aligned_cols=237  Identities=22%  Similarity=0.229  Sum_probs=205.9

Q ss_pred             CCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccc
Q 047985          476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSL  555 (930)
Q Consensus       476 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  555 (930)
                      .+|..+.   +++++|+|++|++++..|..|..++. |++|+|++|++++..|..+..+++|++|+|++|++++..+..|
T Consensus        68 ~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  143 (452)
T 3zyi_A           68 EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHH-LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF  143 (452)
T ss_dssp             SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS
T ss_pred             ccCCCCC---CCccEEECcCCcCceECHHHcCCCCC-CCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh
Confidence            4554332   67999999999999888889999986 9999999999998888899999999999999999998888889


Q ss_pred             cCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhccc
Q 047985          556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNA  635 (930)
Q Consensus       556 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~  635 (930)
                      ..+++|++|+|++|+++.+.+..|..+++|+.|+|++|+..+.++.. .+.++++|++|+|++|++++ +|.  +     
T Consensus       144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~-~~~--~-----  214 (452)
T 3zyi_A          144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKD-MPN--L-----  214 (452)
T ss_dssp             SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSS-CCC--C-----
T ss_pred             cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCcccc-ccc--c-----
Confidence            99999999999999999888888999999999999996554444432 23678999999999999874 331  0     


Q ss_pred             ceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCcc
Q 047985          636 MKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNS  715 (930)
Q Consensus       636 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  715 (930)
                                                               ..+..|+.|+|++|++++..|..|.++++|+.|+|++|+
T Consensus       215 -----------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          215 -----------------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             -----------------------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             -----------------------------------------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence                                                     013568999999999999999999999999999999999


Q ss_pred             ccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccc
Q 047985          716 LHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTG  766 (930)
Q Consensus       716 l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g  766 (930)
                      +++..|..|+++++|+.|||++|++++..+..+..+++|+.|++++|++..
T Consensus       254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            999999999999999999999999998888889999999999999999864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=7.1e-28  Score=263.22  Aligned_cols=180  Identities=22%  Similarity=0.206  Sum_probs=121.7

Q ss_pred             hCCCCCCEEEcCCccCCCCCchhccCC-----CCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCc--hhhhh-
Q 047985          171 DKLTNLKELVLGDVTISSPIPHNLTYL-----SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDE--LPTFI-  242 (930)
Q Consensus       171 ~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l-  242 (930)
                      ..+++|++|++++|.+++. |..++.+     ++|++|++++|++++..|..++++++|++|++++|++.+.  .+..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            4455555555555555555 5555444     6777777777777766666777777777777777776654  23344 


Q ss_pred             -cCCCCCCEEEccCCCCCC--Ccc-hhhcCCCCCCEEEccCCCCCCCCC-CCCCCCcCCcEEEccCCCCCCccCcccccc
Q 047985          243 -GTLGSLKELDLLQNNLSG--ELP-NSIGNLASLEQVDLSLNRFLGKVP-SSLGNLTQLHWLSLASNDFSGELPASFGNL  317 (930)
Q Consensus       243 -~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  317 (930)
                       ..+++|++|++++|.+++  .++ ..+..+++|++|++++|++++..| ..+..+++|++|+|++|+++ .+|..+.  
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--  273 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--  273 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence             677777777777777763  122 334567777888888877777664 44566777888888888877 5666665  


Q ss_pred             cccceeecccccccCCCcccccCCCCCCEEEccCCCCCC
Q 047985          318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG  356 (930)
Q Consensus       318 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  356 (930)
                      ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            7788888888888765 54 7778888888888887765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=258.34  Aligned_cols=237  Identities=23%  Similarity=0.242  Sum_probs=205.7

Q ss_pred             CCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccc
Q 047985          476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSL  555 (930)
Q Consensus       476 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  555 (930)
                      .+|..+.   ++++.|+|++|++++..+..|.++++ |++|+|++|++++..+..+..+++|++|+|++|++++..+..|
T Consensus        57 ~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  132 (440)
T 3zyj_A           57 EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRH-LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF  132 (440)
T ss_dssp             SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSS-CCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred             cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCC-CCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence            5665443   57899999999999888888999886 9999999999998777889999999999999999998877889


Q ss_pred             cCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhccc
Q 047985          556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNA  635 (930)
Q Consensus       556 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~  635 (930)
                      ..+++|++|+|++|+++...+..|..+++|++|+|++|+..+.++.. .+.++++|++|++++|.++ .+|.  +     
T Consensus       133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~-~~~~--~-----  203 (440)
T 3zyj_A          133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLR-EIPN--L-----  203 (440)
T ss_dssp             CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCS-SCCC--C-----
T ss_pred             hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCc-cccc--c-----
Confidence            99999999999999999988888999999999999996555444432 2367899999999999987 4441  0     


Q ss_pred             ceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCcc
Q 047985          636 MKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNS  715 (930)
Q Consensus       636 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  715 (930)
                                                               ..+..|+.|+|++|++++..|..|.++++|+.|+|++|+
T Consensus       204 -----------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          204 -----------------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             -----------------------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             -----------------------------------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence                                                     013458999999999999999999999999999999999


Q ss_pred             ccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccc
Q 047985          716 LHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTG  766 (930)
Q Consensus       716 l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g  766 (930)
                      +++..|..|+++++|+.|||++|++++..+..|..+++|+.|++++|++..
T Consensus       243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            999999999999999999999999998888889999999999999999863

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=7.1e-26  Score=244.08  Aligned_cols=147  Identities=24%  Similarity=0.292  Sum_probs=91.2

Q ss_pred             cccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCc
Q 047985          215 PSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLT  294 (930)
Q Consensus       215 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  294 (930)
                      |..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..|+.+++|++|++++|++++..+..+..++
T Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  177 (285)
T 1ozn_A           98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (285)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence            34444455555555555555554455555555555555555555544444556666666666666666655455566666


Q ss_pred             CCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchh
Q 047985          295 QLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLD  361 (930)
Q Consensus       295 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~  361 (930)
                      +|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++....+..
T Consensus       178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~  244 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence            6667777777666666666666777777777777777655566777777777777777776655443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=6e-25  Score=253.21  Aligned_cols=253  Identities=24%  Similarity=0.219  Sum_probs=190.4

Q ss_pred             CCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCC
Q 047985           96 LEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTN  175 (930)
Q Consensus        96 L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~  175 (930)
                      .+.++.++..++.  +|..+.  ++|++|+|++|.+++..|..++++++|++|+|++|.+.       ...+..+.++++
T Consensus        56 ~~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-------~~~~~~~~~l~~  124 (452)
T 3zyi_A           56 FSKVVCTRRGLSE--VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-------QIEVGAFNGLAS  124 (452)
T ss_dssp             SCEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------EECTTTTTTCTT
T ss_pred             CcEEEECCCCcCc--cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-------CcChhhccCccc
Confidence            4566666666653  454443  56777777777777666777777777777777777431       122345666777


Q ss_pred             CCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCC-CCCCchhhhhcCCCCCCEEEcc
Q 047985          176 LKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN-KLSDELPTFIGTLGSLKELDLL  254 (930)
Q Consensus       176 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~  254 (930)
                      |++|++++|.++...+..+.++++|++|+|++|.++...+..|.++++|++|++++| .+....+..+..+++|++|+++
T Consensus       125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~  204 (452)
T 3zyi_A          125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG  204 (452)
T ss_dssp             CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence            777777777777766677788888888888888888666667888888888888884 4443344467888888888888


Q ss_pred             CCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCC
Q 047985          255 QNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI  334 (930)
Q Consensus       255 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  334 (930)
                      +|.+++. | .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus       205 ~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          205 MCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             TSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence            8888743 4 4778888888888888888888888888888888888888888888888888888888888888888777


Q ss_pred             cccccCCCCCCEEEccCCCCCCCCchh
Q 047985          335 PSSLSNLTHLSFLDFSLNNFSGKMDLD  361 (930)
Q Consensus       335 p~~l~~l~~L~~L~Ls~n~l~~~~~~~  361 (930)
                      +..+..+++|+.|++++|++...-...
T Consensus       283 ~~~~~~l~~L~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          283 HDLFTPLRYLVELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             TTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred             hHHhccccCCCEEEccCCCcCCCCCch
Confidence            777888888999999888887665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.7e-25  Score=241.23  Aligned_cols=255  Identities=21%  Similarity=0.161  Sum_probs=158.3

Q ss_pred             EEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEc
Q 047985           71 IKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDL  150 (930)
Q Consensus        71 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  150 (930)
                      +.++.+++.+... +.    .-.++|++|+|++|.+++. .+..+..+++|++|+|++|.+.+..|..++.+++|++|++
T Consensus        14 ~~~~c~~~~l~~i-p~----~~~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PV----GIPAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCSSC-CT----TCCTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCcCCcccC-Cc----CCCCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            4566666666532 22    2346889999999988764 4456888889999999999888777888888888888888


Q ss_pred             cCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcc
Q 047985          151 SHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLS  230 (930)
Q Consensus       151 s~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  230 (930)
                      ++|....      ...+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        88 ~~n~~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  161 (285)
T 1ozn_A           88 SDNAQLR------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH  161 (285)
T ss_dssp             CSCTTCC------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCCcc------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence            8884111      1113445566666666666666666666666666666666666666665555556666666666666


Q ss_pred             CCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCcc
Q 047985          231 FNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGEL  310 (930)
Q Consensus       231 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  310 (930)
                      +|.+++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|++|++++|.+....
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            66666555555666666666666666666555666666666666666666666554455566666666666666655332


Q ss_pred             CcccccccccceeecccccccCCCcccc
Q 047985          311 PASFGNLRSLRTLDVYECKFSGQIPSSL  338 (930)
Q Consensus       311 p~~l~~l~~L~~L~L~~n~l~~~~p~~l  338 (930)
                      +.. .-...++.+..+.+.+....|..+
T Consensus       242 ~~~-~~~~~l~~~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          242 RAR-PLWAWLQKFRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             GGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred             CcH-HHHHHHHhcccccCccccCCchHh
Confidence            210 111223334444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.4e-24  Score=249.14  Aligned_cols=235  Identities=24%  Similarity=0.246  Sum_probs=169.3

Q ss_pred             CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCC
Q 047985           94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL  173 (930)
Q Consensus        94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l  173 (930)
                      +++++|+|++|.+.+. .+..|.++++|++|+|++|.+.+..+..+.++++|++|+|++|                    
T Consensus        64 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n--------------------  122 (440)
T 3zyj_A           64 TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN--------------------  122 (440)
T ss_dssp             TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS--------------------
T ss_pred             CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC--------------------
Confidence            4566666666665543 3345556666666666666665544455555555555555555                    


Q ss_pred             CCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCC-CCCchhhhhcCCCCCCEEE
Q 047985          174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK-LSDELPTFIGTLGSLKELD  252 (930)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~  252 (930)
                                 .++...+..+..+++|++|+|++|.++...+..|.++++|++|++++|. +....+..|.++++|++|+
T Consensus       123 -----------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          123 -----------RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             -----------CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred             -----------cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence                       4555445566777777777777777776666677777788888887743 3333344677788888888


Q ss_pred             ccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985          253 LLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG  332 (930)
Q Consensus       253 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~  332 (930)
                      +++|.++ .+| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++++
T Consensus       192 L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          192 LAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             CTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred             CCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence            8888887 445 47788888888888888888888888888889999999888888888888888899999999998887


Q ss_pred             CCcccccCCCCCCEEEccCCCCCCCCchhH
Q 047985          333 QIPSSLSNLTHLSFLDFSLNNFSGKMDLDI  362 (930)
Q Consensus       333 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~  362 (930)
                      ..+..+..+++|+.|++++|++...-....
T Consensus       270 ~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~  299 (440)
T 3zyj_A          270 LPHDLFTPLHHLERIHLHHNPWNCNCDILW  299 (440)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred             cChhHhccccCCCEEEcCCCCccCCCCchH
Confidence            777778888999999999998876554433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.4e-24  Score=256.73  Aligned_cols=202  Identities=27%  Similarity=0.300  Sum_probs=118.2

Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      ++|++|++++|++++ +|.   .+. +|+.|++++|++++ +|..   +++|++|++++|++++. |.   .+.+|+.|+
T Consensus       101 ~~L~~L~Ls~N~l~~-l~~---~l~-~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~  167 (622)
T 3g06_A          101 PGLLELSIFSNPLTH-LPA---LPS-GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLW  167 (622)
T ss_dssp             TTCCEEEECSCCCCC-CCC---CCT-TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEE
T ss_pred             CCCCEEECcCCcCCC-CCC---CCC-CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEE
Confidence            456666666666554 222   222 26666666666653 4432   25566666666666542 22   234566666


Q ss_pred             ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccc
Q 047985          566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR  645 (930)
Q Consensus       566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~  645 (930)
                      +++|+++++ |   ..+++|+.|+|++|++++..+      .+++|+.|++++|.++ .+|.                  
T Consensus       168 L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~-~l~~------------------  218 (622)
T 3g06_A          168 AYNNQLTSL-P---MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLT-SLPA------------------  218 (622)
T ss_dssp             CCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS-SCCC------------------
T ss_pred             CCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCccc-ccCC------------------
Confidence            666666653 2   334566666666666665321      1356666666666665 2221                  


Q ss_pred             cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCccccc
Q 047985          646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG  725 (930)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~  725 (930)
                                                      .++.|+.|+|++|+|++ +|   ..+++|+.|+|++|+|+ .+|.   
T Consensus       219 --------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---  258 (622)
T 3g06_A          219 --------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---  258 (622)
T ss_dssp             --------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---
T ss_pred             --------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---
Confidence                                            02346667777777764 44   34466777777777776 4554   


Q ss_pred             ccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCC
Q 047985          726 NLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQ  770 (930)
Q Consensus       726 ~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~  770 (930)
                      .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+++|.+|.
T Consensus       259 ~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          259 LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            4566777777777777 5676777777777777777777766664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=6.6e-28  Score=288.48  Aligned_cols=262  Identities=16%  Similarity=0.128  Sum_probs=160.3

Q ss_pred             CCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCC-C-C------------chhccCCC
Q 047985           54 DCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGS-E-I------------PPEIINLS  119 (930)
Q Consensus        54 ~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~-i------------p~~l~~l~  119 (930)
                      -|++|.++..    .....+++......  .+ ...+.++++|++|+|+++..... . .            +.....++
T Consensus        33 vck~W~~~~~----~~~~~l~~~~~~~~--~~-~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~  105 (594)
T 2p1m_B           33 VCKSWYEIER----WCRRKVFIGNCYAV--SP-ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT  105 (594)
T ss_dssp             SCHHHHHHHH----HHCCEEEESSTTSS--CH-HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HHHHHHHhhh----hhceEEeecccccc--CH-HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence            3557999832    22345666654322  11 12567889999999998753210 0 1            12234688


Q ss_pred             CCCEEEccCCCCCccCCcccc-CCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhcc---
Q 047985          120 SLSYLNLSSAAFSGQIPSEIL-ELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLT---  195 (930)
Q Consensus       120 ~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---  195 (930)
                      +|++|+|++|.+++..+..+. .+++|++|++++|..     +....++..+.++++|++|++++|.+++..+..+.   
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-----FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-----EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-----CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            999999999998887777775 689999999998831     11233566667889999999999887776555443   


Q ss_pred             -CCCCCCEEEccCCC--CCCC-CcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCC------CCcchh
Q 047985          196 -YLSSLTTLSLSGCD--LRGR-IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLS------GELPNS  265 (930)
Q Consensus       196 -~l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------~~~p~~  265 (930)
                       .+++|++|++++|.  ++.. ++..+.++++|++|++++|...+.++..+..+++|++|+++.+...      ..++..
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence             56688888888876  2211 1112244678888888877322236677777778888876655321      023445


Q ss_pred             hcCCCCCCEE-EccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCcc-Ccccccccccceeecccc
Q 047985          266 IGNLASLEQV-DLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGEL-PASFGNLRSLRTLDVYEC  328 (930)
Q Consensus       266 l~~l~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n  328 (930)
                      +.++++|+.| .+.... .+.++..+..+++|++|++++|.+++.. +..+..+++|++|++++|
T Consensus       261 l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            6677777777 333221 1223333345566666666666654322 122345566666666655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=7.3e-26  Score=247.85  Aligned_cols=246  Identities=22%  Similarity=0.217  Sum_probs=123.3

Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      ++|++|++++|.+++..|..+..++. |++|+|++|.+++..|  +..+++|++|++++|++++..     ..++|++|+
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~  105 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTT-CCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCc-CCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence            45555555555555554455555553 5555555555554332  455555555555555555322     224555555


Q ss_pred             ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccc
Q 047985          566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR  645 (930)
Q Consensus       566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~  645 (930)
                      +++|++++..+..   +++|++|++++|++++..+..+  ..+++|++||+++|.+++..|...+..++.++.+++....
T Consensus       106 l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             CCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             CCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence            5555555543322   3445555555555555443332  3345555555555555543332221222222222211110


Q ss_pred             cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCccccc
Q 047985          646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG  725 (930)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~  725 (930)
                      ....                        .....++.|+.|+|++|++++. |..+..+++|+.|+|++|+++ .+|..++
T Consensus       181 l~~~------------------------~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~  234 (317)
T 3o53_A          181 IYDV------------------------KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALR  234 (317)
T ss_dssp             CCEE------------------------ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred             Cccc------------------------ccccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhh
Confidence            0000                        0000134466666666666643 333666666666666666666 4566666


Q ss_pred             ccCCCCeeeCCCCcCc-ccCCccccCCCCCCeeecCC-CcccccCCC
Q 047985          726 NLTDLESLDLSNNRFS-GQIPQQLVELTFLEFFNVSD-NHFTGPIPQ  770 (930)
Q Consensus       726 ~L~~L~~LdLs~N~ls-g~ip~~l~~L~~L~~L~ls~-N~L~g~iP~  770 (930)
                      .+++|+.|+|++|+++ +.+|..+..++.|+.+++++ +.++|..|.
T Consensus       235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            6666666666666666 55666666666666666663 345555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=6.4e-26  Score=248.30  Aligned_cols=261  Identities=20%  Similarity=0.176  Sum_probs=159.3

Q ss_pred             cEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEE
Q 047985           69 HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYL  148 (930)
Q Consensus        69 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  148 (930)
                      ++...+++.+.+...+..  .+..+++|++|+|++|.+++. .|..+..+++|++|+|++|.+++..|  ++.+++|++|
T Consensus        11 ~l~i~~ls~~~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EEEEESCCTTTHHHHHHH--HHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             ceeEeeccccchhhhHHH--HhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            355556666665433332  344567888888888888764 55678888888888888888875544  7777888888


Q ss_pred             EccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEE
Q 047985          149 DLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLD  228 (930)
Q Consensus       149 ~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  228 (930)
                      ++++|.+                               ++     +...++|++|++++|.+++..+.   .+++|++|+
T Consensus        86 ~Ls~n~l-------------------------------~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~  126 (317)
T 3o53_A           86 DLNNNYV-------------------------------QE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIY  126 (317)
T ss_dssp             ECCSSEE-------------------------------EE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEE
T ss_pred             ECcCCcc-------------------------------cc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEE
Confidence            8887742                               11     11124555555555555433222   244566666


Q ss_pred             ccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhh-cCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985          229 LSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS  307 (930)
Q Consensus       229 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  307 (930)
                      +++|.+++..+..++.+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|+|++|+++
T Consensus       127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA  204 (317)
T ss_dssp             CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC
Confidence            66666665555555666666666666666665555544 3566666666666666544 22 223666777777777766


Q ss_pred             CccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCC
Q 047985          308 GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTN  378 (930)
Q Consensus       308 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n  378 (930)
                      + +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++....... ++..+++|+.++++++
T Consensus       205 ~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          205 F-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             E-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH-HHHTCHHHHHHHHHHH
T ss_pred             c-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH-HHhccccceEEECCCc
Confidence            4 3344666777777777777776 35666667777777777777776222222 2256666777766644

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.1e-23  Score=224.83  Aligned_cols=217  Identities=25%  Similarity=0.298  Sum_probs=122.1

Q ss_pred             CCCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCC
Q 047985           53 IDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFS  132 (930)
Q Consensus        53 ~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~  132 (930)
                      .++|.|.|+.|.-. +.++.++++++.++. ++.  .+.  ++|++|+|++|.+.+. .+..+..+++|++|+|++|.++
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~   74 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ   74 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence            37999999999532 345677888777763 332  221  4566666666666543 2335666666666666666665


Q ss_pred             ccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCC
Q 047985          133 GQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG  212 (930)
Q Consensus       133 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  212 (930)
                      +..+..+.++++|++|++++|                               .+++..+..+..+++|++|++++|.+++
T Consensus        75 ~i~~~~~~~l~~L~~L~l~~n-------------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           75 TLPAGIFKELKNLETLWVTDN-------------------------------KLQALPIGVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             CCCTTTTSSCTTCCEEECCSS-------------------------------CCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred             eeChhhhcCCCCCCEEECCCC-------------------------------cCCcCCHhHcccccCCCEEECCCCccCe
Confidence            333333345555555555555                               3333333444555556666666665555


Q ss_pred             CCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCC
Q 047985          213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN  292 (930)
Q Consensus       213 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  292 (930)
                      ..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..
T Consensus       124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence            55555555555666666665555544444555555555555555555444444555555555555555555444444555


Q ss_pred             CcCCcEEEccCCCCC
Q 047985          293 LTQLHWLSLASNDFS  307 (930)
Q Consensus       293 l~~L~~L~Ls~N~l~  307 (930)
                      +++|+.|+|++|.+.
T Consensus       204 l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          204 LEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTCCEEECCSSCBC
T ss_pred             ccCCCEEEecCCCee
Confidence            555555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2e-24  Score=250.35  Aligned_cols=231  Identities=23%  Similarity=0.236  Sum_probs=186.8

Q ss_pred             CCchHHhhcc---cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCC
Q 047985          476 EIPSWICNLS---NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIP  552 (930)
Q Consensus       476 ~ip~~~~~~~---~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  552 (930)
                      .+|..+..+.   ++|+.|+|++|.+++..|..|..++. |++|+|++|.+++..|  +..+++|++|+|++|.+++..+
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~   97 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV   97 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC
Confidence            4555555542   37999999999999888888998886 9999999999987666  8888999999999999986543


Q ss_pred             ccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhh
Q 047985          553 RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC  632 (930)
Q Consensus       553 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~  632 (930)
                           .++|+.|++++|.+++..+.   .+++|+.|+|++|++++..|..+  ..+++|+.|||++|.+++.+|......
T Consensus        98 -----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~  167 (487)
T 3oja_A           98 -----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS  167 (487)
T ss_dssp             -----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred             -----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh
Confidence                 38899999999999988664   45789999999999998877655  568899999999999987666432111


Q ss_pred             cccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeecc
Q 047985          633 WNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLA  712 (930)
Q Consensus       633 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls  712 (930)
                                                                    ++.|+.|+|++|.|++..+  +..+++|+.|+|+
T Consensus       168 ----------------------------------------------l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls  199 (487)
T 3oja_A          168 ----------------------------------------------SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLS  199 (487)
T ss_dssp             ----------------------------------------------TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECC
T ss_pred             ----------------------------------------------CCcccEEecCCCccccccc--cccCCCCCEEECC
Confidence                                                          3458889999999987632  3458899999999


Q ss_pred             CccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCccc-ccCC
Q 047985          713 DNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT-GPIP  769 (930)
Q Consensus       713 ~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~-g~iP  769 (930)
                      +|.+++.+| .++.+++|+.|||++|++++ +|..+..++.|+.|++++|++. |.+|
T Consensus       200 ~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          200 SNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             SSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             CCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            999986544 58899999999999999986 7888888999999999999987 5555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=8.1e-23  Score=241.55  Aligned_cols=266  Identities=24%  Similarity=0.271  Sum_probs=147.7

Q ss_pred             CCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEcc
Q 047985          223 RLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLA  302 (930)
Q Consensus       223 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  302 (930)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|+|++|++++ +|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            4677777777776 4444443  56777777777766 3444   45667777777776653 443   45666667777


Q ss_pred             CCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccc
Q 047985          303 SNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL  382 (930)
Q Consensus       303 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  382 (930)
                      +|.+++ +|.   .+++|++|++++|++++ +|..   +++|++|++++|.+++. +     ...               
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~-----~~~---------------  160 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-P-----ALP---------------  160 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-C-----CCC---------------
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-C-----Ccc---------------
Confidence            666664 233   34566666666666653 3332   35566666666655431 1     011               


Q ss_pred             cccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCC
Q 047985          383 LTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPN  462 (930)
Q Consensus       383 ~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  462 (930)
                                .+|+.|++++|.++.+|   ..+++|+.|++++|.+++ +|.     ..++|+.|++++|.++.      
T Consensus       161 ----------~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~------  215 (622)
T 3g06_A          161 ----------SELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPT-----LPSELYKLWAYNNRLTS------  215 (622)
T ss_dssp             ----------TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSS------
T ss_pred             ----------CCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCC-----ccchhhEEECcCCcccc------
Confidence                      23333334444444444   234556666666665553 222     12445555555544442      


Q ss_pred             cceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEc
Q 047985          463 TVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDL  542 (930)
Q Consensus       463 l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  542 (930)
                                    +|..    +++|+.|++++|++++ +|.   .++ +|+.|+|++|+|+ .+|.   .+++|+.|+|
T Consensus       216 --------------l~~~----~~~L~~L~Ls~N~L~~-lp~---~l~-~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L  268 (622)
T 3g06_A          216 --------------LPAL----PSGLKELIVSGNRLTS-LPV---LPS-ELKELMVSGNRLT-SLPM---LPSGLLSLSV  268 (622)
T ss_dssp             --------------CCCC----CTTCCEEECCSSCCSC-CCC---CCT-TCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred             --------------cCCC----CCCCCEEEccCCccCc-CCC---CCC-cCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence                          2211    1456666666666664 342   223 3666677766666 3444   3456666666


Q ss_pred             cCccccccCCccccCCCCCcEecccCccccccCcccccC
Q 047985          543 SDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGT  581 (930)
Q Consensus       543 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  581 (930)
                      ++|+++ .+|..+.++++|+.|+|++|.+++.+|..+..
T Consensus       269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence            666666 45666666666777777777666666655543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=7.4e-25  Score=253.91  Aligned_cols=233  Identities=21%  Similarity=0.211  Sum_probs=123.0

Q ss_pred             CCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhh
Q 047985           92 KLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD  171 (930)
Q Consensus        92 ~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~  171 (930)
                      .+++|++|+|++|.+++. .|..|+.+++|++|+|++|.+++..|  ++.+++|++|+|++|.+.        .++    
T Consensus        32 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~--------~l~----   96 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ--------ELL----   96 (487)
T ss_dssp             TGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE--------EEE----
T ss_pred             cCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC--------CCC----
Confidence            445788888888888764 56678888888888888888876555  777888888888887431        111    


Q ss_pred             CCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhc-CCCCCCE
Q 047985          172 KLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIG-TLGSLKE  250 (930)
Q Consensus       172 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~  250 (930)
                      ..++|++|++++|.+++..+.   .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++
T Consensus        97 ~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~  173 (487)
T 3oja_A           97 VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH  173 (487)
T ss_dssp             ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred             CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence            125555555555555554332   234455555555555544444445555555555555555544444443 3445555


Q ss_pred             EEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccc
Q 047985          251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF  330 (930)
Q Consensus       251 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l  330 (930)
                      |+|++|.+++. |. +..+++|++|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+
T Consensus       174 L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          174 LNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             EECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred             EecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence            55555554432 11 2234444444444444443222 24444444444444444442 333344444444444444444


Q ss_pred             c-CCCcccccCCCCCCE
Q 047985          331 S-GQIPSSLSNLTHLSF  346 (930)
Q Consensus       331 ~-~~~p~~l~~l~~L~~  346 (930)
                      . +.+|..+..++.|+.
T Consensus       250 ~c~~~~~~~~~l~~L~~  266 (487)
T 3oja_A          250 HCGTLRDFFSKNQRVQT  266 (487)
T ss_dssp             CHHHHHHHHTTCHHHHH
T ss_pred             cCcchHHHHHhCCCCcE
Confidence            3 333333333333333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=3.5e-23  Score=221.84  Aligned_cols=228  Identities=22%  Similarity=0.203  Sum_probs=173.2

Q ss_pred             eeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCc
Q 047985          490 SLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDN  569 (930)
Q Consensus       490 ~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  569 (930)
                      .++.++..++ .+|..+.   .+|++|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|++++|
T Consensus        11 ~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            3444455544 3454432   24778888888877666667777788888888888888777777888888888888888


Q ss_pred             cccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcc-cCChHHHhhcccceecccccccccc
Q 047985          570 QIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTG-KLPSMAFQCWNAMKVVNASELRYMQ  648 (930)
Q Consensus       570 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~~~~~l~~l~~l~~~~~~~~~  648 (930)
                      ++++..+..|..+++|++|++++|++.+..+..+  ..+++|++|++++|.+++ .+|.. +..                
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~~~----------------  147 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-FSN----------------  147 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-GGG----------------
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-hcc----------------
Confidence            8888877788888888888888888887655443  667888888888888875 24432 111                


Q ss_pred             ccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccc----eeeccCccccccCcccc
Q 047985          649 EVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQ----ILSLADNSLHGHIPSCL  724 (930)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~g~ip~~l  724 (930)
                                                    ++.|+.|+|++|++++..+..+..++.|+    .|++++|.+++..+..+
T Consensus       148 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~  197 (276)
T 2z62_A          148 ------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF  197 (276)
T ss_dssp             ------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS
T ss_pred             ------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc
Confidence                                          34588899999999888888888877777    89999999997666655


Q ss_pred             cccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCC
Q 047985          725 GNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG  771 (930)
Q Consensus       725 ~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~  771 (930)
                      .. .+|+.|+|++|++++..+..+..+++|+.|++++|++.+..|.-
T Consensus       198 ~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          198 KE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             CS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             CC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            44 58999999999999777777889999999999999999877753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=3e-26  Score=274.06  Aligned_cols=88  Identities=15%  Similarity=0.160  Sum_probs=43.7

Q ss_pred             CCCCccEEEccCccccccCCccccC-CCCCcEecccCccccccCcccc-cCCCCCcEEEccCCcccccCCCCCccCCCCC
Q 047985          533 KGNILKVIDLSDNLLQGRIPRSLAN-CSNLEFLDLGDNQIRDIFPSWL-GTLPDLNVLILKSNKFHGLIREPKTDCGFPK  610 (930)
Q Consensus       533 ~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  610 (930)
                      .+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|++++...... ...+++
T Consensus       430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~-~~~l~~  507 (594)
T 2p1m_B          430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN-ASKLET  507 (594)
T ss_dssp             HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT-GGGGGG
T ss_pred             hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH-HHhCCC
Confidence            344555555544 444333333333 5556666666665554433333 345666666666666533221111 123456


Q ss_pred             ceEEECCCCcCc
Q 047985          611 LRIIDLSKNRFT  622 (930)
Q Consensus       611 L~~LdLs~N~l~  622 (930)
                      |+.|++++|+++
T Consensus       508 L~~L~l~~~~~~  519 (594)
T 2p1m_B          508 MRSLWMSSCSVS  519 (594)
T ss_dssp             SSEEEEESSCCB
T ss_pred             CCEEeeeCCCCC
Confidence            666666666663

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=2e-22  Score=215.88  Aligned_cols=143  Identities=24%  Similarity=0.276  Sum_probs=75.7

Q ss_pred             ccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCC-CcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCc
Q 047985          216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG-ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLT  294 (930)
Q Consensus       216 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  294 (930)
                      ..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++ .+|..++.+++|++|++++|++++..+..+..++
T Consensus        94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  173 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  173 (276)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence            333344444444444444443333334444444444444444443 2344555555555555555555544444444444


Q ss_pred             CCc----EEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCc
Q 047985          295 QLH----WLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMD  359 (930)
Q Consensus       295 ~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~  359 (930)
                      +|+    .|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       174 ~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          174 QMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             TCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             hccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            444    566666666644343333 3366777777777665555556667777777777777776554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.3e-22  Score=216.72  Aligned_cols=209  Identities=24%  Similarity=0.301  Sum_probs=149.0

Q ss_pred             CCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccC
Q 047985          117 NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTY  196 (930)
Q Consensus       117 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  196 (930)
                      .+++|++|++++|.+. .++ .++.+++|++|++++|.+.+        + ..+.++++|++|++++|.+++..+..+.+
T Consensus        39 ~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~--------~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  107 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD--------I-SALKELTNLTYLILTGNQLQSLPNGVFDK  107 (272)
T ss_dssp             HHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC--------C-GGGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             cccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC--------c-hhhcCCCCCCEEECCCCccCccChhHhcC
Confidence            3444444444444443 122 24444455555555443211        1 13445555555555555666666666778


Q ss_pred             CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985          197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD  276 (930)
Q Consensus       197 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  276 (930)
                      +++|++|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..++.+++|++|+
T Consensus       108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            88888888888888877777778888888888888888877777778888888888888888877777778888888888


Q ss_pred             ccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCC
Q 047985          277 LSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTH  343 (930)
Q Consensus       277 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  343 (930)
                      +++|++++..+..+..+++|++|++++|.+.+.       +++|+.|++..|.++|.+|..++.+..
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            888888887777788888899999988887644       457888888899999888888776543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=3.8e-23  Score=225.47  Aligned_cols=205  Identities=21%  Similarity=0.221  Sum_probs=156.5

Q ss_pred             CceeecCCCccccccCccc--CCCCCccEEEccCccccccCC----ccccCCCCCcEecccCccccccCcccccCCCCCc
Q 047985          513 LSILDLQHNKFSGTIPDNL--LKGNILKVIDLSDNLLQGRIP----RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLN  586 (930)
Q Consensus       513 L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  586 (930)
                      |++|++++|.+++..|..+  ..+++|++|+|++|++++..+    ..+..+++|++|++++|++++..|..++.+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            7777777777777777666  667777777777777776544    3345678888888888888888888888888888


Q ss_pred             EEEccCCccccc--CCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeee
Q 047985          587 VLILKSNKFHGL--IREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSL  664 (930)
Q Consensus       587 ~L~L~~N~l~~~--~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  664 (930)
                      +|+|++|++.+.  ++.......+++|++|+|++|+++ .+|.....-+                               
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~-------------------------------  220 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA-------------------------------  220 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH-------------------------------
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH-------------------------------
Confidence            888888887653  222332356788999999999986 2222110000                               


Q ss_pred             EeeecccccccccccccccEEEcccccccccCchhcccc---cccceeeccCccccccCcccccccCCCCeeeCCCCcCc
Q 047985          665 TMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNL---KGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS  741 (930)
Q Consensus       665 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l---~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ls  741 (930)
                                  ...+.|+.|||++|++++.+|..++.+   ++|+.|+|++|+++ .+|..+.  ++|+.|||++|+++
T Consensus       221 ------------~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          221 ------------AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             ------------HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred             ------------hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence                        013458999999999999989888877   69999999999999 7888775  89999999999999


Q ss_pred             ccCCccccCCCCCCeeecCCCcccc
Q 047985          742 GQIPQQLVELTFLEFFNVSDNHFTG  766 (930)
Q Consensus       742 g~ip~~l~~L~~L~~L~ls~N~L~g  766 (930)
                      +. |. +..++.|+.|++++|+++.
T Consensus       286 ~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          286 RA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CC-ch-hhhCCCccEEECcCCCCCC
Confidence            74 43 6788999999999999974

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=8.9e-24  Score=233.48  Aligned_cols=266  Identities=21%  Similarity=0.248  Sum_probs=187.5

Q ss_pred             CCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCC--CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCC
Q 047985           54 DCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKL--VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF  131 (930)
Q Consensus        54 ~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l  131 (930)
                      -|.+|.++.|+.  ..++.+|++++.+...     .+..+  +++++|++++|.+.+. .+ .+..+++|++|+|++|.+
T Consensus        35 vc~~W~~~~~~~--~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L~L~~~~l  105 (336)
T 2ast_B           35 VCKRWYRLASDE--SLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHMDLSNSVI  105 (336)
T ss_dssp             SCHHHHHHHTCS--TTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEEECTTCEE
T ss_pred             HHHHHHHHhcCc--hhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEEEccCCCc
Confidence            456799999863  3577899998877632     45666  8899999999988764 33 366788899999998888


Q ss_pred             Ccc-CCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCc-cCCCC-CchhccCCCCCCEEEccCC
Q 047985          132 SGQ-IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDV-TISSP-IPHNLTYLSSLTTLSLSGC  208 (930)
Q Consensus       132 ~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n  208 (930)
                      ++. +|..+..+++|++|++++|.+    .   ...+..+..+++|++|++++| .+++. ++..+.++++|++|++++|
T Consensus       106 ~~~~~~~~~~~~~~L~~L~L~~~~l----~---~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          106 EVSTLHGILSQCSKLQNLSLEGLRL----S---DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             CHHHHHHHHTTBCCCSEEECTTCBC----C---HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             CHHHHHHHHhhCCCCCEEeCcCccc----C---HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            765 777788888888888888843    2   345566777888888888887 56653 5566777788888888888


Q ss_pred             -CCCCC-CcccccCCC-CCcEEEccCC--CCC-CchhhhhcCCCCCCEEEccCCC-CCCCcchhhcCCCCCCEEEccCCC
Q 047985          209 -DLRGR-IPSSLGNIT-RLIHLDLSFN--KLS-DELPTFIGTLGSLKELDLLQNN-LSGELPNSIGNLASLEQVDLSLNR  281 (930)
Q Consensus       209 -~l~~~-~p~~l~~l~-~L~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~  281 (930)
                       .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus       179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence             77653 456667777 8888888887  455 4456666777788888888877 666666677777888888887774


Q ss_pred             -CCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccc-cccceeecccccccCCCccccc
Q 047985          282 -FLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL-RSLRTLDVYECKFSGQIPSSLS  339 (930)
Q Consensus       282 -l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~  339 (930)
                       +.......+.++++|+.|++++| ++.   ..+..+ .+++.|++++|++++..|..++
T Consensus       259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          259 DIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             TCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence             22222224667777777777777 332   123333 2366666777777777666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=3.5e-21  Score=205.43  Aligned_cols=164  Identities=23%  Similarity=0.249  Sum_probs=92.9

Q ss_pred             cCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCE
Q 047985          195 TYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQ  274 (930)
Q Consensus       195 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  274 (930)
                      .++++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|+.+++|++
T Consensus        58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  137 (270)
T 2o6q_A           58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY  137 (270)
T ss_dssp             SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence            33333333333333333322333344455555555555555444444555555555555555555555555556666666


Q ss_pred             EEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCC
Q 047985          275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNF  354 (930)
Q Consensus       275 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  354 (930)
                      |+|++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus       138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            66666666555445566666666666666666655555566666666666666666655555566677777777777776


Q ss_pred             CCCC
Q 047985          355 SGKM  358 (930)
Q Consensus       355 ~~~~  358 (930)
                      ....
T Consensus       218 ~c~c  221 (270)
T 2o6q_A          218 DCTC  221 (270)
T ss_dssp             CCSS
T ss_pred             eCCC
Confidence            5543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=2.2e-23  Score=232.72  Aligned_cols=262  Identities=20%  Similarity=0.217  Sum_probs=195.4

Q ss_pred             eEEeccCcCCCCCchHHhhcccccceeecccccccCcCc----ccccccccCCceeecCCCccccccCcccCCC-----C
Q 047985          465 NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP----QCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-----N  535 (930)
Q Consensus       465 ~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p----~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l-----~  535 (930)
                      .+.++.|.++|.+|..+... ++|++|++++|.+++..+    ..+..++.+|++|+|++|.+++..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            35677788888888776655 679999999999987776    6677776239999999999988777766664     8


Q ss_pred             CccEEEccCccccccCCcc----ccCC-CCCcEecccCccccccCccccc----C-CCCCcEEEccCCcccccCCCCC--
Q 047985          536 ILKVIDLSDNLLQGRIPRS----LANC-SNLEFLDLGDNQIRDIFPSWLG----T-LPDLNVLILKSNKFHGLIREPK--  603 (930)
Q Consensus       536 ~L~~L~Ls~N~l~~~~p~~----l~~l-~~L~~L~Ls~N~l~~~~p~~l~----~-l~~L~~L~L~~N~l~~~~~~~~--  603 (930)
                      +|++|+|++|.+++..+..    +..+ ++|++|++++|++++..+..+.    . .++|++|+|++|++.......+  
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            8999999999999877764    4444 8999999999999988776543    3 3699999999999885432221  


Q ss_pred             ccCCCC-CceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccc
Q 047985          604 TDCGFP-KLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDIL  682 (930)
Q Consensus       604 ~~~~l~-~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  682 (930)
                      ....++ +|++|+|++|++++..+......+.                                          ..+..|
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~------------------------------------------~~~~~L  198 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLA------------------------------------------SIPASV  198 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH------------------------------------------TSCTTC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHH------------------------------------------hCCCCC
Confidence            112333 8999999999998655433211111                                          112358


Q ss_pred             cEEEccccccccc----Cchhccc-ccccceeeccCccccccCc----ccccccCCCCeeeCCCCcCccc-------CCc
Q 047985          683 TAVILSSNRFDGE----IPTSISN-LKGLQILSLADNSLHGHIP----SCLGNLTDLESLDLSNNRFSGQ-------IPQ  746 (930)
Q Consensus       683 ~~L~Ls~N~l~g~----ip~~l~~-l~~L~~L~Ls~N~l~g~ip----~~l~~L~~L~~LdLs~N~lsg~-------ip~  746 (930)
                      +.|||++|.+++.    ++..+.. .++|+.|||++|.+++..+    ..+..+++|+.|+|++|.+.+.       ++.
T Consensus       199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~  278 (362)
T 3goz_A          199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA  278 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT
T ss_pred             CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH
Confidence            9999999999874    4555655 3589999999999987554    4457778999999999995543       344


Q ss_pred             cccCCCCCCeeecCCCcccccCC
Q 047985          747 QLVELTFLEFFNVSDNHFTGPIP  769 (930)
Q Consensus       747 ~l~~L~~L~~L~ls~N~L~g~iP  769 (930)
                      .+..++.|+.||+++|++.+..|
T Consensus       279 ~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          279 AFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             TSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HhccCCceEEEecCCCcCCCcch
Confidence            67788999999999999886633

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=8.8e-22  Score=214.69  Aligned_cols=231  Identities=19%  Similarity=0.197  Sum_probs=131.2

Q ss_pred             CCCCCCEEECCCCCCCCCCCch--hccCCCCCCEEEccCCCCCccCCccc--cCCCCCcEEEccCCCCCCCccccCCchh
Q 047985           92 KLVHLEWLDLAFNDFDGSEIPP--EIINLSSLSYLNLSSAAFSGQIPSEI--LELSKLAYLDLSHNSYYDPVELRKPSLG  167 (930)
Q Consensus        92 ~l~~L~~L~Ls~n~~~~~~ip~--~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~~~~~~~~~~~~l~  167 (930)
                      +-..++.|.+..+.++...+..  .+..+++|++|+|++|.+.+..|..+  +.+++|++|++++|.+....    ..++
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~----~~~~  137 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR----SWLA  137 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT----SSHH
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh----hhhH
Confidence            3345677888777765321211  12234668888888888888888777  77888888888888542110    0111


Q ss_pred             hhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCc--hh--hhhc
Q 047985          168 NLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDE--LP--TFIG  243 (930)
Q Consensus       168 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p--~~l~  243 (930)
                      .                       ..+..+++|++|++++|.+.+..+..++.+++|++|++++|++.+.  ++  ..++
T Consensus       138 ~-----------------------~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  194 (310)
T 4glp_A          138 E-----------------------LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH  194 (310)
T ss_dssp             H-----------------------HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred             H-----------------------HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence            0                       1222344555555555555444445555555555555555554432  11  1224


Q ss_pred             CCCCCCEEEccCCCCCCCcch----hhcCCCCCCEEEccCCCCCCCCCCCCCCC---cCCcEEEccCCCCCCccCccccc
Q 047985          244 TLGSLKELDLLQNNLSGELPN----SIGNLASLEQVDLSLNRFLGKVPSSLGNL---TQLHWLSLASNDFSGELPASFGN  316 (930)
Q Consensus       244 ~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~  316 (930)
                      .+++|++|+|++|.++ .++.    .++.+++|++|+|++|++++..|..+..+   ++|++|+|++|+++ .+|..+. 
T Consensus       195 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-  271 (310)
T 4glp_A          195 KFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-  271 (310)
T ss_dssp             SSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred             cCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence            5556666666666654 2222    23555666666666666666555555554   46666666666666 4455443 


Q ss_pred             ccccceeecccccccCCCcccccCCCCCCEEEccCCCCC
Q 047985          317 LRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS  355 (930)
Q Consensus       317 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  355 (930)
                       ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus       272 -~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          272 -AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             -SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             -CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence             5666677777766643 22 455666777777776665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=7.9e-22  Score=210.70  Aligned_cols=222  Identities=23%  Similarity=0.254  Sum_probs=165.9

Q ss_pred             CCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCC
Q 047985          119 SSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLS  198 (930)
Q Consensus       119 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  198 (930)
                      ..+..+++..+.+.+..  .+..+++|+.|++++|.+.        .+ ..+..+++|++|++++|.+.+.  ..+..++
T Consensus        19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~--------~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~   85 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK--------SV-QGIQYLPNVRYLALGGNKLHDI--SALKELT   85 (272)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC--------CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCT
T ss_pred             HHHHHHHhcCccccccc--ccccccceeeeeeCCCCcc--------cc-cccccCCCCcEEECCCCCCCCc--hhhcCCC
Confidence            34555666666665443  3567888999999888532        11 2366788888888888887763  4677888


Q ss_pred             CCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 047985          199 SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS  278 (930)
Q Consensus       199 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  278 (930)
                      +|++|++++|.+++..+..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++..+..++.+++|++|+++
T Consensus        86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A           86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence            88888888888887766677888888888888888887777777888888888888888887666667788888888888


Q ss_pred             CCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCC
Q 047985          279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKM  358 (930)
Q Consensus       279 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  358 (930)
                      +|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.       +++|+.|+++.|.++|.+
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVV  238 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGB
T ss_pred             CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcc
Confidence            8888777667777888888888888888877777777788888888888877644       446777777777777777


Q ss_pred             ch
Q 047985          359 DL  360 (930)
Q Consensus       359 ~~  360 (930)
                      |.
T Consensus       239 p~  240 (272)
T 3rfs_A          239 RN  240 (272)
T ss_dssp             BC
T ss_pred             cC
Confidence            64

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=5.5e-21  Score=205.80  Aligned_cols=204  Identities=23%  Similarity=0.257  Sum_probs=121.3

Q ss_pred             cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985           89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN  168 (930)
Q Consensus        89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  168 (930)
                      .+..++++++++++++.++.  +|..+.  ++|++|+|++|.+++..|..+..+++|++|++++|.+.        .++.
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~   72 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--------KLQV   72 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC--------EEEC
T ss_pred             cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC--------cccC
Confidence            46677888888888888864  565554  67888888888888777777888888888888888531        1111


Q ss_pred             hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985          169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL  248 (930)
Q Consensus       169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  248 (930)
                      . ..++                        +|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|
T Consensus        73 ~-~~l~------------------------~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L  126 (290)
T 1p9a_G           73 D-GTLP------------------------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL  126 (290)
T ss_dssp             C-SCCT------------------------TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred             C-CCCC------------------------cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence            1 3344                        4444444444444 334444555555555555555554444555555555


Q ss_pred             CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985          249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC  328 (930)
Q Consensus       249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  328 (930)
                      ++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+.+|+.|++++|
T Consensus       127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence            55555555555444444555555555555555555444444555555556666555555 44545555555666666666


Q ss_pred             ccc
Q 047985          329 KFS  331 (930)
Q Consensus       329 ~l~  331 (930)
                      .+.
T Consensus       206 p~~  208 (290)
T 1p9a_G          206 PWL  208 (290)
T ss_dssp             CBC
T ss_pred             Ccc
Confidence            554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.2e-23  Score=234.94  Aligned_cols=207  Identities=20%  Similarity=0.203  Sum_probs=129.6

Q ss_pred             hCCCCCCEEEcCCccCCC----CCchhccCCCCCCEEEccCCCCCCCCccc----ccCC---------CCCcEEEccCCC
Q 047985          171 DKLTNLKELVLGDVTISS----PIPHNLTYLSSLTTLSLSGCDLRGRIPSS----LGNI---------TRLIHLDLSFNK  233 (930)
Q Consensus       171 ~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l---------~~L~~L~Ls~n~  233 (930)
                      ..+++|++|++++|.++.    .++..+..+++|++|+|++|.++...+..    +..+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            455555555555555555    24445555666666666666654322222    2222         677777777777


Q ss_pred             CC-Cchh---hhhcCCCCCCEEEccCCCCCC-----CcchhhcCCCCCCEEEccCCCCC----CCCCCCCCCCcCCcEEE
Q 047985          234 LS-DELP---TFIGTLGSLKELDLLQNNLSG-----ELPNSIGNLASLEQVDLSLNRFL----GKVPSSLGNLTQLHWLS  300 (930)
Q Consensus       234 l~-~~~p---~~l~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~  300 (930)
                      ++ +.++   ..+..+++|++|++++|.++.     .+|..+..+++|++|+|++|.++    +.+|..+..+++|++|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            76 3333   355666777777777777762     23336677777777777777775    45666677777788888


Q ss_pred             ccCCCCCCc----cCccc--ccccccceeecccccccC----CCcccc-cCCCCCCEEEccCCCCCCCCc-hhHHhhccc
Q 047985          301 LASNDFSGE----LPASF--GNLRSLRTLDVYECKFSG----QIPSSL-SNLTHLSFLDFSLNNFSGKMD-LDIFLVNHK  368 (930)
Q Consensus       301 Ls~N~l~~~----~p~~l--~~l~~L~~L~L~~n~l~~----~~p~~l-~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~  368 (930)
                      |++|.+++.    ++..+  +.+++|++|+|++|.+++    .+|..+ .++++|+.|++++|.+++..+ ...+...++
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~  330 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS  330 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhh
Confidence            888877754    45555  337788888888888876    466666 557888888888888887665 223334445


Q ss_pred             cccEEEccC
Q 047985          369 LLYHLFLST  377 (930)
Q Consensus       369 ~L~~L~Ls~  377 (930)
                      +++.+++..
T Consensus       331 ~~~~~~l~~  339 (386)
T 2ca6_A          331 TRGRGELDE  339 (386)
T ss_dssp             HHTCCEECC
T ss_pred             hcCcchhhh
Confidence            554444433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=8.8e-21  Score=204.22  Aligned_cols=207  Identities=25%  Similarity=0.270  Sum_probs=167.5

Q ss_pred             ccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhc
Q 047985          115 IINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNL  194 (930)
Q Consensus       115 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l  194 (930)
                      ++++++|++++++++.++ .+|..+.  +++++|++++|                               .+++..+..+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N-------------------------------~l~~~~~~~~   51 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSEN-------------------------------LLYTFSLATL   51 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTS-------------------------------CCSEEEGGGG
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCC-------------------------------cCCccCHHHh
Confidence            566677777777777766 4554432  34555555554                               5555566777


Q ss_pred             cCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCE
Q 047985          195 TYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQ  274 (930)
Q Consensus       195 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  274 (930)
                      .++++|++|++++|.+++..+  .+.+++|++|++++|.++ .+|..+..+++|++|++++|++++..|..|..+++|++
T Consensus        52 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~  128 (290)
T 1p9a_G           52 MPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE  128 (290)
T ss_dssp             TTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             hcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence            888888888888888875433  278899999999999998 56778889999999999999999877788999999999


Q ss_pred             EEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCC
Q 047985          275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNF  354 (930)
Q Consensus       275 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  354 (930)
                      |+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++
T Consensus       129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            999999999887788899999999999999999776677888999999999999998 6788888888999999999998


Q ss_pred             CCCCc
Q 047985          355 SGKMD  359 (930)
Q Consensus       355 ~~~~~  359 (930)
                      .....
T Consensus       208 ~C~c~  212 (290)
T 1p9a_G          208 LCNCE  212 (290)
T ss_dssp             CCSGG
T ss_pred             cCcCc
Confidence            76543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=9.1e-21  Score=199.87  Aligned_cols=192  Identities=24%  Similarity=0.317  Sum_probs=105.9

Q ss_pred             CCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCc
Q 047985           54 DCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSG  133 (930)
Q Consensus        54 ~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~  133 (930)
                      +||.|.|.+|...   .+.++++++.++. ++.  .+.  ++|++|+|++|.+.+. .+..+..+++|++|+|++|.+++
T Consensus         3 ~Cp~~~gC~C~~~---~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~   73 (251)
T 3m19_A            3 TCETVTGCTCNEG---KKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQT   73 (251)
T ss_dssp             -CHHHHSSEEEGG---GTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCC
T ss_pred             cCCCCCceEcCCC---CeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCc
Confidence            6889999999532   3357777777653 222  221  4555666666655543 33445555555555555555554


Q ss_pred             cCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCC
Q 047985          134 QIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGR  213 (930)
Q Consensus       134 ~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  213 (930)
                      ..|..+..+++|++|++++|                                                       .+++.
T Consensus        74 ~~~~~~~~l~~L~~L~L~~n-------------------------------------------------------~l~~~   98 (251)
T 3m19_A           74 LSAGVFDDLTELGTLGLANN-------------------------------------------------------QLASL   98 (251)
T ss_dssp             CCTTTTTTCTTCCEEECTTS-------------------------------------------------------CCCCC
T ss_pred             cCHhHhccCCcCCEEECCCC-------------------------------------------------------ccccc
Confidence            44444444444444444444                                                       33333


Q ss_pred             CcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCC
Q 047985          214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL  293 (930)
Q Consensus       214 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  293 (930)
                      .+..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++..+..|+.+++|++|+|++|++++..+..+..+
T Consensus        99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  178 (251)
T 3m19_A           99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL  178 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence            33334444555555555555554444445555555555555555554444455666666666666666665555566666


Q ss_pred             cCCcEEEccCCCCCCc
Q 047985          294 TQLHWLSLASNDFSGE  309 (930)
Q Consensus       294 ~~L~~L~Ls~N~l~~~  309 (930)
                      ++|++|++++|.+.+.
T Consensus       179 ~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          179 GKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTCCEEECCSCCBCTT
T ss_pred             CCCCEEEeeCCceeCC
Confidence            6666666666666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=2.5e-22  Score=224.10  Aligned_cols=257  Identities=18%  Similarity=0.174  Sum_probs=129.6

Q ss_pred             EECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCC----ccccCCC-CCcEEEccCCCCCCCccccCCchhhhhhCC
Q 047985           99 LDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIP----SEILELS-KLAYLDLSHNSYYDPVELRKPSLGNLADKL  173 (930)
Q Consensus        99 L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l  173 (930)
                      ++|+.|.+++. +|..+...++|++|||++|.+++..+    ..+..++ +|++|+|++|.+.+...   ..+...+...
T Consensus         3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~l~~~   78 (362)
T 3goz_A            3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS---DELVQILAAI   78 (362)
T ss_dssp             EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH---HHHHHHHHTS
T ss_pred             cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH---HHHHHHHhcc
Confidence            34444444443 34433334445555555554443333    3344444 45555555543211000   1112222222


Q ss_pred             -CCCCEEEcCCccCCCCCchhc----cCC-CCCCEEEccCCCCCCCCcccc----cC-CCCCcEEEccCCCCCCc----h
Q 047985          174 -TNLKELVLGDVTISSPIPHNL----TYL-SSLTTLSLSGCDLRGRIPSSL----GN-ITRLIHLDLSFNKLSDE----L  238 (930)
Q Consensus       174 -~~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~Ls~n~l~~~----~  238 (930)
                       ++|++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++.    +
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence             455555555555554444432    222 556666666665554443332    22 24666666666666542    2


Q ss_pred             hhhhcCCC-CCCEEEccCCCCCCCcchhh----cCC-CCCCEEEccCCCCCCC----CCCCCCC-CcCCcEEEccCCCCC
Q 047985          239 PTFIGTLG-SLKELDLLQNNLSGELPNSI----GNL-ASLEQVDLSLNRFLGK----VPSSLGN-LTQLHWLSLASNDFS  307 (930)
Q Consensus       239 p~~l~~l~-~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~n~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~  307 (930)
                      +..+..++ +|++|+|++|.+++..+..+    ..+ ++|++|+|++|.+++.    ++..+.. .++|++|+|++|.++
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            33344444 66666666666665554333    333 4677777777766542    2333333 246777777777766


Q ss_pred             CccC----cccccccccceeecccccccCCC-------cccccCCCCCCEEEccCCCCCCCCc
Q 047985          308 GELP----ASFGNLRSLRTLDVYECKFSGQI-------PSSLSNLTHLSFLDFSLNNFSGKMD  359 (930)
Q Consensus       308 ~~~p----~~l~~l~~L~~L~L~~n~l~~~~-------p~~l~~l~~L~~L~Ls~n~l~~~~~  359 (930)
                      +..+    ..+..+++|++|++++|.+.+..       +..+..+++|+.|++++|++....+
T Consensus       239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            5433    23455667777777777644332       2345566777777777777765533

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=4.9e-22  Score=219.49  Aligned_cols=252  Identities=21%  Similarity=0.308  Sum_probs=191.0

Q ss_pred             CCCEEECCCCCCCCCCCchhccCC--CCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhC
Q 047985           95 HLEWLDLAFNDFDGSEIPPEIINL--SSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADK  172 (930)
Q Consensus        95 ~L~~L~Ls~n~~~~~~ip~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~  172 (930)
                      .++.++++++.+.    +..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+    .  ...++..+..
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l----~--~~~~~~~~~~  116 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI----E--VSTLHGILSQ  116 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE----C--HHHHHHHHTT
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc----C--HHHHHHHHhh
Confidence            4889999998875    5567777  8999999999999977665 66899999999999943    1  1236778889


Q ss_pred             CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCC-CCCCC-CcccccCCCCCcEEEccCC-CCCCc-hhhhhcCCC-C
Q 047985          173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGC-DLRGR-IPSSLGNITRLIHLDLSFN-KLSDE-LPTFIGTLG-S  247 (930)
Q Consensus       173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~-~  247 (930)
                      +++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            999999999999988888888888999999999998 67653 5666788889999999998 88764 577788888 8


Q ss_pred             CCEEEccCC--CCC-CCcchhhcCCCCCCEEEccCCC-CCCCCCCCCCCCcCCcEEEccCCC-CCCccCcccccccccce
Q 047985          248 LKELDLLQN--NLS-GELPNSIGNLASLEQVDLSLNR-FLGKVPSSLGNLTQLHWLSLASND-FSGELPASFGNLRSLRT  322 (930)
Q Consensus       248 L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~  322 (930)
                      |++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.++++|++
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  276 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  276 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence            999999888  555 4567777888888888888888 666677778888888888888884 33222235677788888


Q ss_pred             eecccccccCCCcccccCCCCCCEEEccCCCCCCCCch
Q 047985          323 LDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDL  360 (930)
Q Consensus       323 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~  360 (930)
                      |++++| ++...-..+.  ..++.|+++.|++++..|.
T Consensus       277 L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          277 LQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             EECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCS
T ss_pred             EeccCc-cCHHHHHHHH--hhCcceEEecccCccccCC
Confidence            888877 4322211121  2245555777777766553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.1e-22  Score=229.34  Aligned_cols=244  Identities=21%  Similarity=0.219  Sum_probs=182.2

Q ss_pred             CchhccCCCCCCEEEccCCCCCccCCc----cccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccC
Q 047985          111 IPPEIINLSSLSYLNLSSAAFSGQIPS----EILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTI  186 (930)
Q Consensus       111 ip~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l  186 (930)
                      ++..+..+++|++|+|++|.+++..+.    .+..+++|++|+|++|.+                            +.+
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~----------------------------~~l   75 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT----------------------------GRV   75 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT----------------------------TSC
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc----------------------------Ccc
Confidence            344455556666666666665544222    234455555555555421                            133


Q ss_pred             CCCCchh-------ccCCCCCCEEEccCCCCCC----CCcccccCCCCCcEEEccCCCCCCchhhhh----cCC------
Q 047985          187 SSPIPHN-------LTYLSSLTTLSLSGCDLRG----RIPSSLGNITRLIHLDLSFNKLSDELPTFI----GTL------  245 (930)
Q Consensus       187 ~~~~~~~-------l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l------  245 (930)
                      .+.+|..       +..+++|++|+|++|.+++    .+|..+..+++|++|+|++|.+++..+..+    ..+      
T Consensus        76 ~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~  155 (386)
T 2ca6_A           76 KDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA  155 (386)
T ss_dssp             GGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence            3444544       4789999999999999987    467788999999999999999975544444    334      


Q ss_pred             ---CCCCEEEccCCCCC-CCcc---hhhcCCCCCCEEEccCCCCCC-----CCCCCCCCCcCCcEEEccCCCCC----Cc
Q 047985          246 ---GSLKELDLLQNNLS-GELP---NSIGNLASLEQVDLSLNRFLG-----KVPSSLGNLTQLHWLSLASNDFS----GE  309 (930)
Q Consensus       246 ---~~L~~L~L~~n~l~-~~~p---~~l~~l~~L~~L~Ls~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~  309 (930)
                         ++|++|++++|.++ +.+|   ..+..+++|++|++++|+++.     ..|..+..+++|++|+|++|.++    +.
T Consensus       156 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~  235 (386)
T 2ca6_A          156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA  235 (386)
T ss_dssp             HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred             ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHH
Confidence               89999999999998 4455   467789999999999999873     35558899999999999999996    56


Q ss_pred             cCcccccccccceeecccccccCC----Ccccc--cCCCCCCEEEccCCCCCC----CCchhHHhhccccccEEEccCCc
Q 047985          310 LPASFGNLRSLRTLDVYECKFSGQ----IPSSL--SNLTHLSFLDFSLNNFSG----KMDLDIFLVNHKLLYHLFLSTNR  379 (930)
Q Consensus       310 ~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l--~~l~~L~~L~Ls~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n~  379 (930)
                      +|..+..+++|++|+|++|.+++.    ++..+  +.+++|+.|++++|.+++    .++.... .++++|+.|++++|+
T Consensus       236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEEECTTSB
T ss_pred             HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-hcCCCceEEEccCCc
Confidence            788889999999999999999865    56666  449999999999999987    3444332 567899999999987


Q ss_pred             cccc
Q 047985          380 LSLL  383 (930)
Q Consensus       380 l~~~  383 (930)
                      +...
T Consensus       315 l~~~  318 (386)
T 2ca6_A          315 FSEE  318 (386)
T ss_dssp             SCTT
T ss_pred             CCcc
Confidence            6543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=5.7e-20  Score=199.84  Aligned_cols=196  Identities=22%  Similarity=0.289  Sum_probs=120.5

Q ss_pred             cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985           89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN  168 (930)
Q Consensus        89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  168 (930)
                      ....+++|++|++++|.+..  +| .+..+++|++|+|++|.+.+. +. +..+++|++|++++|.+             
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l-------------   97 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPL-------------   97 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCC-------------
T ss_pred             cHHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcC-------------
Confidence            45567788888888887764  34 577788888888888887743 33 77777777777777743             


Q ss_pred             hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985          169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL  248 (930)
Q Consensus       169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  248 (930)
                                        ++.  ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+  +..+++|
T Consensus        98 ------------------~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L  153 (308)
T 1h6u_A           98 ------------------KNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL  153 (308)
T ss_dssp             ------------------SCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred             ------------------CCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc
Confidence                              211  1244445555555555555432 2 25555555555555555554433  5556666


Q ss_pred             CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985          249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC  328 (930)
Q Consensus       249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  328 (930)
                      ++|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..+  +..+++|++|++++|
T Consensus       154 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          154 QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred             cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence            666666666654322  5666666666666666654433  5666667777777776665432  666777777777777


Q ss_pred             cccC
Q 047985          329 KFSG  332 (930)
Q Consensus       329 ~l~~  332 (930)
                      .+++
T Consensus       228 ~i~~  231 (308)
T 1h6u_A          228 TITN  231 (308)
T ss_dssp             EEEC
T ss_pred             eeec
Confidence            7664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=8.7e-20  Score=198.42  Aligned_cols=173  Identities=26%  Similarity=0.377  Sum_probs=146.4

Q ss_pred             hhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCC
Q 047985          170 ADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK  249 (930)
Q Consensus       170 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  249 (930)
                      +..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..  .+..+++|+
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~  132 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQ  132 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCC
T ss_pred             hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCC
Confidence            3445555555555555655444  88899999999999999864  36999999999999999998753  389999999


Q ss_pred             EEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeeccccc
Q 047985          250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECK  329 (930)
Q Consensus       250 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~  329 (930)
                      +|++++|.+++..+  ++.+++|++|++++|++++..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|+
T Consensus       133 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          133 VLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred             EEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence            99999999996544  8899999999999999987544  8999999999999999986544  8899999999999999


Q ss_pred             ccCCCcccccCCCCCCEEEccCCCCCC
Q 047985          330 FSGQIPSSLSNLTHLSFLDFSLNNFSG  356 (930)
Q Consensus       330 l~~~~p~~l~~l~~L~~L~Ls~n~l~~  356 (930)
                      +++..+  +..+++|+.|++++|++++
T Consensus       207 l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          207 ISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             cCcccc--ccCCCCCCEEEccCCeeec
Confidence            996553  8999999999999999975

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.4e-19  Score=190.75  Aligned_cols=180  Identities=21%  Similarity=0.293  Sum_probs=143.4

Q ss_pred             CCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEcc
Q 047985          175 NLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLL  254 (930)
Q Consensus       175 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  254 (930)
                      ..++++++++.++. +|..+.  +++++|+|++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            34556666665553 344343  578888888888887777778888888888888888888777778888888888888


Q ss_pred             CCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCC
Q 047985          255 QNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI  334 (930)
Q Consensus       255 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  334 (930)
                      +|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..++.+++|++|+|++|++++..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            88888777777888888888888888888777777888888888888888888777767888888888888888888777


Q ss_pred             cccccCCCCCCEEEccCCCCCCC
Q 047985          335 PSSLSNLTHLSFLDFSLNNFSGK  357 (930)
Q Consensus       335 p~~l~~l~~L~~L~Ls~n~l~~~  357 (930)
                      +..+..+++|+.|++++|++.+.
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            77788888899999999988766

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=5e-20  Score=192.69  Aligned_cols=178  Identities=17%  Similarity=0.183  Sum_probs=87.1

Q ss_pred             CCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCC-CCccCCccccCCCCCcEEEccC-CCCCCCccccCCchhhhhhC
Q 047985           95 HLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAA-FSGQIPSEILELSKLAYLDLSH-NSYYDPVELRKPSLGNLADK  172 (930)
Q Consensus        95 ~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~~l~~  172 (930)
                      +|++|++++|.+++. .+..+..+++|++|++++|. +++..+..+.++++|++|++++ |                   
T Consensus        32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-------------------   91 (239)
T 2xwt_C           32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-------------------   91 (239)
T ss_dssp             TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-------------------
T ss_pred             cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-------------------
Confidence            455555555555432 22244555555555555554 4433333444444444444444 3                   


Q ss_pred             CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCc---EEEccCC-CCCCchhhhhcCCCCC
Q 047985          173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLI---HLDLSFN-KLSDELPTFIGTLGSL  248 (930)
Q Consensus       173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~Ls~n-~l~~~~p~~l~~l~~L  248 (930)
                                  .+++..+..+.++++|++|++++|.+++ +|. +..+++|+   +|++++| .+++..+..|..+++|
T Consensus        92 ------------~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L  157 (239)
T 2xwt_C           92 ------------NLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE  157 (239)
T ss_dssp             ------------TCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred             ------------CeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence                        3333334455666666666666666664 443 55555555   5555555 5554444445555555


Q ss_pred             C-EEEccCCCCCCCcchhhcCCCCCCEEEccCCC-CCCCCCCCCCCC-cCCcEEEccCCCCC
Q 047985          249 K-ELDLLQNNLSGELPNSIGNLASLEQVDLSLNR-FLGKVPSSLGNL-TQLHWLSLASNDFS  307 (930)
Q Consensus       249 ~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~  307 (930)
                      + +|++++|.++ .+|......++|+.|++++|+ +++..+..|..+ ++|+.|++++|+++
T Consensus       158 ~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            5 5555555554 333222222445555555552 443333444444 44444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=7.3e-20  Score=191.41  Aligned_cols=179  Identities=17%  Similarity=0.193  Sum_probs=89.5

Q ss_pred             hhccCCCCCCEEEccCCC-CCCCCcccccCCCCCcEEEccC-CCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCC
Q 047985          192 HNLTYLSSLTTLSLSGCD-LRGRIPSSLGNITRLIHLDLSF-NKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNL  269 (930)
Q Consensus       192 ~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  269 (930)
                      ..+.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|.++++|++|++++|.+++ +|. +..+
T Consensus        49 ~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l  126 (239)
T 2xwt_C           49 HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKV  126 (239)
T ss_dssp             TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTC
T ss_pred             HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccc
Confidence            344444555555555553 4433334455555555555554 55554444445555555555555555553 343 4455


Q ss_pred             CCCC---EEEccCC-CCCCCCCCCCCCCcCCc-EEEccCCCCCCccCcccccccccceeeccccc-ccCCCcccccCC-C
Q 047985          270 ASLE---QVDLSLN-RFLGKVPSSLGNLTQLH-WLSLASNDFSGELPASFGNLRSLRTLDVYECK-FSGQIPSSLSNL-T  342 (930)
Q Consensus       270 ~~L~---~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~  342 (930)
                      ++|+   +|++++| ++++..+..|.++++|+ +|++++|+++ .+|......++|++|++++|+ +++..+..|..+ +
T Consensus       127 ~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~  205 (239)
T 2xwt_C          127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS  205 (239)
T ss_dssp             CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred             cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcccc
Confidence            5554   5555555 55544444455555555 5555555555 233222222555566665553 554444455555 5


Q ss_pred             CCCEEEccCCCCCCCCchhHHhhccccccEEEccCC
Q 047985          343 HLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTN  378 (930)
Q Consensus       343 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n  378 (930)
                      +|+.|++++|++++. |.    ..+++|+.|+++++
T Consensus       206 ~L~~L~l~~N~l~~l-~~----~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          206 GPSLLDVSQTSVTAL-PS----KGLEHLKELIARNT  236 (239)
T ss_dssp             CCSEEECTTCCCCCC-CC----TTCTTCSEEECTTC
T ss_pred             CCcEEECCCCccccC-Ch----hHhccCceeeccCc
Confidence            566666666555532 21    13445555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=9.3e-20  Score=212.67  Aligned_cols=190  Identities=27%  Similarity=0.419  Sum_probs=130.4

Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      .+|+.|++++|++++ +|..+.  + .|++|+|++|+|+ .+|   ..+++|++|+|++|+|++ +|. +..  +|+.|+
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l~--~-~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNLP--P-QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCCC--T-TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CCccEEEeCCCCCCc-cCHhHc--C-CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            378888888888876 665443  3 4888888888887 566   345778888888888876 555 554  788888


Q ss_pred             ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccc
Q 047985          566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR  645 (930)
Q Consensus       566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~  645 (930)
                      |++|+|++ +|.   .+++|+.|+|++|++++. |.     .+++|++|+|++|++++ +|.  +               
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~-----~l~~L~~L~Ls~N~L~~-lp~--l---------------  178 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTML-PE-----LPTSLEVLSVRNNQLTF-LPE--L---------------  178 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCSC-CCC--C---------------
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCcC-CC-----cCCCcCEEECCCCCCCC-cch--h---------------
Confidence            88888877 344   567788888888877763 32     35677777777777764 542  1               


Q ss_pred             cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhccccccc-------ceeeccCccccc
Q 047985          646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGL-------QILSLADNSLHG  718 (930)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L-------~~L~Ls~N~l~g  718 (930)
                                                       ...|+.|+|++|+|+ .+|. |..  +|       +.|+|++|+|+ 
T Consensus       179 ---------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-  220 (571)
T 3cvr_A          179 ---------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-  220 (571)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred             ---------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence                                             123677777777777 5665 543  56       77777777777 


Q ss_pred             cCcccccccCCCCeeeCCCCcCcccCCccccCCCC
Q 047985          719 HIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTF  753 (930)
Q Consensus       719 ~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~  753 (930)
                      .||..+..+++|+.|+|++|++++.+|..+..++.
T Consensus       221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            56777777777777777777777777777666543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=3.3e-19  Score=197.75  Aligned_cols=239  Identities=21%  Similarity=0.224  Sum_probs=165.5

Q ss_pred             EEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCc-ccCCCCCccE-EEcc
Q 047985          466 YLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD-NLLKGNILKV-IDLS  543 (930)
Q Consensus       466 l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~-L~Ls  543 (930)
                      ++.++++++ .||..+   ++++++|+|++|+|+...+..|.++++ |++|+|++|++.+.+|. .|.+++++++ +.++
T Consensus        14 v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~-L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           14 FLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTT-CCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCC-CCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            344445555 666554   257888999999888665567888885 99999999888776664 5667777654 6667


Q ss_pred             CccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC-CcccccCCCCCccCCC-CCceEEECCCCcC
Q 047985          544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS-NKFHGLIREPKTDCGF-PKLRIIDLSKNRF  621 (930)
Q Consensus       544 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l-~~L~~LdLs~N~l  621 (930)
                      +|++++..|..|..+++|++|++++|+++...+..+....++..|++.+ |++....+..+  ..+ ..+++|++++|++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNGI  166 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSCC
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhccccccc
Confidence            7888888888888888999999999988888777777777888888866 45555433333  233 4688888888888


Q ss_pred             cccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCc-hhc
Q 047985          622 TGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIP-TSI  700 (930)
Q Consensus       622 ~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip-~~l  700 (930)
                      + .+|...+.                                               ...++.+++++|+..+.|| ..|
T Consensus       167 ~-~i~~~~f~-----------------------------------------------~~~L~~l~l~~~n~l~~i~~~~f  198 (350)
T 4ay9_X          167 Q-EIHNSAFN-----------------------------------------------GTQLDELNLSDNNNLEELPNDVF  198 (350)
T ss_dssp             C-EECTTSST-----------------------------------------------TEEEEEEECTTCTTCCCCCTTTT
T ss_pred             c-CCChhhcc-----------------------------------------------ccchhHHhhccCCcccCCCHHHh
Confidence            6 44433221                                               1236778887544334555 457


Q ss_pred             ccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCc
Q 047985          701 SNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNH  763 (930)
Q Consensus       701 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~  763 (930)
                      +.+++|+.|||++|+|+...+..+.   +|+.|.+.++.--..+| .+.++++|+.++++++.
T Consensus       199 ~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          199 HGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             TTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             ccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            8888899999999988854444444   45555544444444667 47788888888888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=5.8e-19  Score=180.31  Aligned_cols=182  Identities=24%  Similarity=0.256  Sum_probs=94.1

Q ss_pred             CCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCcc
Q 047985           55 CCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQ  134 (930)
Q Consensus        55 ~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~  134 (930)
                      .|.|++|.|...            .+. .++.    .-.++|++|++++|.+++. .+..+..+++|++|+|++|.+++.
T Consensus         6 ~C~~~~v~c~~~------------~l~-~~p~----~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~   67 (208)
T 2o6s_A            6 SCSGTTVECYSQ------------GRT-SVPT----GIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSL   67 (208)
T ss_dssp             EEETTEEECCSS------------CCS-SCCS----CCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCC
T ss_pred             EECCCEEEecCC------------Ccc-CCCC----CCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCcc
Confidence            389999999643            122 1111    1234677777777777643 334466777777777777777644


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCC
Q 047985          135 IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRI  214 (930)
Q Consensus       135 ~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  214 (930)
                      .+..+..+++|++|++++|.                               +++..+..+.++++|++|++++|++++..
T Consensus        68 ~~~~~~~l~~L~~L~Ls~n~-------------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  116 (208)
T 2o6s_A           68 PNGVFNKLTSLTYLNLSTNQ-------------------------------LQSLPNGVFDKLTQLKELALNTNQLQSLP  116 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-------------------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ChhhcCCCCCcCEEECCCCc-------------------------------CCccCHhHhcCccCCCEEEcCCCcCcccC
Confidence            44445556666666666553                               23323333444455555555555554443


Q ss_pred             cccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCC
Q 047985          215 PSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN  292 (930)
Q Consensus       215 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  292 (930)
                      +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+       .+++|+.|+++.|+++|.+|..++.
T Consensus       117 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence            3344444555555555554444444344444444444444444332       2233444444444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=8e-20  Score=213.24  Aligned_cols=210  Identities=22%  Similarity=0.290  Sum_probs=142.5

Q ss_pred             CCCCCCCCCCCCCCC-----cccce-EecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhc
Q 047985           42 AASWKPEEGNNIDCC-----SWDGV-QCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEI  115 (930)
Q Consensus        42 l~~W~~~~~~~~~~C-----~w~gv-~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l  115 (930)
                      +.+|..    +.++|     .|.|+ .|..  ++|+.|+|+++.+.+ ++.  .+  +++|++|+|++|.++.  +|   
T Consensus        33 l~~W~~----~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip---   96 (571)
T 3cvr_A           33 WDKWEK----QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP---   96 (571)
T ss_dssp             HHHHHT----TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC---
T ss_pred             HHHHhc----cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc---
Confidence            556865    45677     79999 7863  478999999999987 554  34  3789999999999873  66   


Q ss_pred             cCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhcc
Q 047985          116 INLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLT  195 (930)
Q Consensus       116 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  195 (930)
                      ..+++|++|+|++|.+++ +|. +..  +|++|++++|.+                               ++ +|.   
T Consensus        97 ~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l-------------------------------~~-lp~---  137 (571)
T 3cvr_A           97 ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQL-------------------------------TM-LPE---  137 (571)
T ss_dssp             CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCC-------------------------------SC-CCC---
T ss_pred             cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcC-------------------------------CC-CCC---
Confidence            557889999999998886 676 554  788888887743                               22 222   


Q ss_pred             CCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCC---
Q 047985          196 YLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL---  272 (930)
Q Consensus       196 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L---  272 (930)
                      .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|++|+|++|.++ .+|. +..  +|   
T Consensus       138 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~  205 (571)
T 3cvr_A          138 LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHS  205 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC--------
T ss_pred             cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcc
Confidence            34455555555555553 333   34556666666666655 343 33  56666666666666 4454 433  55   


Q ss_pred             ----CEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccc
Q 047985          273 ----EQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRS  319 (930)
Q Consensus       273 ----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  319 (930)
                          +.|+|++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..++.
T Consensus       206 ~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             --CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             cccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence                88888888887 46777777888888888888888887777765543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=4e-19  Score=181.53  Aligned_cols=175  Identities=22%  Similarity=0.261  Sum_probs=97.8

Q ss_pred             CceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC
Q 047985          513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS  592 (930)
Q Consensus       513 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  592 (930)
                      |++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  109 (208)
T 2o6s_A           30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT  109 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence            55555555555544444445555555555555555554444455556666666666666555555555566666666666


Q ss_pred             CcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccc
Q 047985          593 NKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQM  672 (930)
Q Consensus       593 N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (930)
                      |++++..+..+  ..+++|++|++++|++++ +|...+..                                        
T Consensus       110 N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~-~~~~~~~~----------------------------------------  146 (208)
T 2o6s_A          110 NQLQSLPDGVF--DKLTQLKDLRLYQNQLKS-VPDGVFDR----------------------------------------  146 (208)
T ss_dssp             SCCCCCCTTTT--TTCTTCCEEECCSSCCSC-CCTTTTTT----------------------------------------
T ss_pred             CcCcccCHhHh--ccCCcCCEEECCCCccce-eCHHHhcc----------------------------------------
Confidence            66555443322  445566666666666653 22211111                                        


Q ss_pred             cccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCcc
Q 047985          673 MSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQ  747 (930)
Q Consensus       673 ~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~  747 (930)
                            .+.|+.|++++|.+.+.       ++.|+.|+++.|+++|.+|..++.++.    ++..|...|..+.+
T Consensus       147 ------l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~  204 (208)
T 2o6s_A          147 ------LTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS  204 (208)
T ss_dssp             ------CTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred             ------CCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence                  23356666666665533       346677777777777777777776654    55566555555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1.7e-18  Score=191.89  Aligned_cols=222  Identities=16%  Similarity=0.104  Sum_probs=136.7

Q ss_pred             CCCCEEECCCCCCCCCCCch-hccCCCCCCEEEccCCCCCccCCc-cccCCCCCcEEEccCCCCCCCccccCCchhhhhh
Q 047985           94 VHLEWLDLAFNDFDGSEIPP-EIINLSSLSYLNLSSAAFSGQIPS-EILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD  171 (930)
Q Consensus        94 ~~L~~L~Ls~n~~~~~~ip~-~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~  171 (930)
                      +++++|+|++|.++.  +|+ .|.++++|++|+|++|.+.+.+|. .|.++++|+++                       
T Consensus        30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~-----------------------   84 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI-----------------------   84 (350)
T ss_dssp             TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE-----------------------
T ss_pred             CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh-----------------------
Confidence            456666666666653  333 456666666666666665544443 33444444432                       


Q ss_pred             CCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccC-CCCCCchhhhhcCCC-CCC
Q 047985          172 KLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSF-NKLSDELPTFIGTLG-SLK  249 (930)
Q Consensus       172 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~-~L~  249 (930)
                             +.++.|+++...|..|..+++|++|++++|+++...+..+....++..|++.+ +.+....+..+..+. .++
T Consensus        85 -------l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~  157 (350)
T 4ay9_X           85 -------RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV  157 (350)
T ss_dssp             -------EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred             -------hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence                   22333455555566777777888888888877766555566666777777765 455544445555553 577


Q ss_pred             EEEccCCCCCCCcchhhcCCCCCCEEEccC-CCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985          250 ELDLLQNNLSGELPNSIGNLASLEQVDLSL-NRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC  328 (930)
Q Consensus       250 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  328 (930)
                      +|++++|+++ .+|.......+|+.|++++ |.++...+..|..+++|++|+|++|+++...+..+.+++   .|.+.++
T Consensus       158 ~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~---~L~~l~~  233 (350)
T 4ay9_X          158 ILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK---KLRARST  233 (350)
T ss_dssp             EEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCC---EEECTTC
T ss_pred             hhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccch---HhhhccC
Confidence            8888888887 4555555567788888875 445443345678888888888888888755444444444   4444333


Q ss_pred             cccCCCcccccCCCCCCEEEccCC
Q 047985          329 KFSGQIPSSLSNLTHLSFLDFSLN  352 (930)
Q Consensus       329 ~l~~~~p~~l~~l~~L~~L~Ls~n  352 (930)
                      .-...+| .+..+++|+.+++.++
T Consensus       234 ~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          234 YNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             CCcCcCC-CchhCcChhhCcCCCC
Confidence            3333555 3677778888777543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1.6e-17  Score=178.84  Aligned_cols=172  Identities=26%  Similarity=0.342  Sum_probs=96.2

Q ss_pred             cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985           89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN  168 (930)
Q Consensus        89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  168 (930)
                      .+..+++|++|++++|.+..  ++ .+..+++|++|+|++|.+++..+  ++.+++|++|++++|.+.        .++ 
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~--------~~~-  106 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK--------DLS-  106 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC--------CGG-
T ss_pred             chhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC--------CCh-
Confidence            45677888888888888764  33 47778888888888888875433  778888888888887531        122 


Q ss_pred             hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985          169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL  248 (930)
Q Consensus       169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  248 (930)
                      .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|
T Consensus       107 ~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L  180 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL  180 (291)
T ss_dssp             GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCcc
Confidence            245555555555555555542  2344455555555555555432  334444444444444444444332  4444444


Q ss_pred             CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCC
Q 047985          249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRF  282 (930)
Q Consensus       249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  282 (930)
                      ++|++++|.+++ +| .+..+++|+.|++++|++
T Consensus       181 ~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          181 QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred             CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence            444444444442 22 234444444444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=3.9e-17  Score=192.78  Aligned_cols=175  Identities=26%  Similarity=0.346  Sum_probs=117.9

Q ss_pred             cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985           89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN  168 (930)
Q Consensus        89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  168 (930)
                      .+..+++|+.|++++|.+..  +| .+..+++|++|+|++|.+.+..|  +..+++|++|+|++|.+.+        ++ 
T Consensus        38 ~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--------l~-  103 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--------LS-  103 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--------CT-
T ss_pred             chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC--------Ch-
Confidence            45677888888888888764  33 57888888888888888885444  7788888888888885421        22 


Q ss_pred             hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985          169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL  248 (930)
Q Consensus       169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  248 (930)
                      .+..+++|++|+|++|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|
T Consensus       104 ~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L  177 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL  177 (605)
T ss_dssp             TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCC
Confidence            456667777777777766653  3466667777777777766644  456666666666666666666554  6666666


Q ss_pred             CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCC
Q 047985          249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGK  285 (930)
Q Consensus       249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  285 (930)
                      ++|+|++|.+++. | .+..+++|+.|+|++|.+.+.
T Consensus       178 ~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          178 QNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             CEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence            6666666666643 2 466666666666666666543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=4.2e-17  Score=175.57  Aligned_cols=173  Identities=25%  Similarity=0.338  Sum_probs=101.6

Q ss_pred             ccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhc
Q 047985          115 IINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNL  194 (930)
Q Consensus       115 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l  194 (930)
                      +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.                               +++..+  +
T Consensus        42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~-------------------------------l~~~~~--l   86 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNK-------------------------------LTDIKP--L   86 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-------------------------------CCCCGG--G
T ss_pred             hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCc-------------------------------cCCCcc--c
Confidence            3456666666666666653 23 35566666666666663                               333222  4


Q ss_pred             cCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCE
Q 047985          195 TYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQ  274 (930)
Q Consensus       195 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  274 (930)
                      .++++|++|++++|.+++ + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++
T Consensus        87 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  160 (291)
T 1h6t_A           87 ANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT  160 (291)
T ss_dssp             TTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             ccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence            455555555555555543 1 2355556666666666665543  3455566666666666666543  35666666666


Q ss_pred             EEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985          275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG  332 (930)
Q Consensus       275 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~  332 (930)
                      |++++|++++..+  +..+++|++|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus       161 L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          161 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             EEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            6666666665444  66666677777777766642 3 36667777777777776664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=3e-17  Score=168.96  Aligned_cols=160  Identities=19%  Similarity=0.171  Sum_probs=136.6

Q ss_pred             eEEeccCcCCCCCchHHhhcccccceeecccccccCcCc-ccccccccCCceeecCCCccccccCcccCCCCCccEEEcc
Q 047985          465 NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP-QCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLS  543 (930)
Q Consensus       465 ~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  543 (930)
                      .+++++|.++ .+|..+.   ..+++|++++|++++..| ..|..++. |++|+|++|++++..+..+..+++|++|+|+
T Consensus        15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~-L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQ-LRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCC-CCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            3444444444 4565443   457899999999998755 45788886 9999999999998888889999999999999


Q ss_pred             CccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcc
Q 047985          544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTG  623 (930)
Q Consensus       544 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g  623 (930)
                      +|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+  ..+++|+.|+|++|++++
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEEC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcC
Confidence            999999988899999999999999999999999999999999999999999999887666  678999999999999998


Q ss_pred             cCChHHHh
Q 047985          624 KLPSMAFQ  631 (930)
Q Consensus       624 ~ip~~~~~  631 (930)
                      ..+..++.
T Consensus       168 ~c~l~~l~  175 (220)
T 2v70_A          168 NCYLAWLG  175 (220)
T ss_dssp             SGGGHHHH
T ss_pred             CCchHHHH
Confidence            87755543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=8.4e-19  Score=212.37  Aligned_cols=221  Identities=19%  Similarity=0.178  Sum_probs=100.4

Q ss_pred             cHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCCcccccC
Q 047985            7 HGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINS   86 (930)
Q Consensus         7 ~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~   86 (930)
                      ...+++||+++..+......             .....|...   .+..+.|.++.+..  ++|+.|+|.++.+..... 
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~-  190 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKT-------------AKKQQPTGD---STPSGTATNSAVST--PLTPKIELFANGKDEANQ-  190 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHT-------------TC---------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccC-------------cccCCCcCC---CCccccCCCceecC--CccceEEeeCCCCCcchh-
Confidence            34578899999987653321             134467542   45678899998864  689999999988865322 


Q ss_pred             cccccCCCCCCEEECCCCCCCCC--------CCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCC
Q 047985           87 SSSLFKLVHLEWLDLAFNDFDGS--------EIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDP  158 (930)
Q Consensus        87 ~~~l~~l~~L~~L~Ls~n~~~~~--------~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~  158 (930)
                        .+     |+.++|+.|.+.+.        ..|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+   
T Consensus       191 --~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l---  259 (727)
T 4b8c_D          191 --AL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL---  259 (727)
T ss_dssp             --------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC---
T ss_pred             --hH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC---
Confidence              22     33344444443321        13566778888888888888887 6777777788888888888753   


Q ss_pred             ccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCch
Q 047985          159 VELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDEL  238 (930)
Q Consensus       159 ~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  238 (930)
                           ..+|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..|+++++|++|+|++|.+++.+
T Consensus       260 -----~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          260 -----TELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             -----SCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred             -----cccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCC
Confidence                 234555666666666666666666 45666666666666666666665 45555666666666666666666666


Q ss_pred             hhhhcCCC-CCCEEEccCCCCCCCcch
Q 047985          239 PTFIGTLG-SLKELDLLQNNLSGELPN  264 (930)
Q Consensus       239 p~~l~~l~-~L~~L~L~~n~l~~~~p~  264 (930)
                      |..+..+. .+..|+|++|.+++.+|.
T Consensus       333 p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          333 LKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             hHHHhhcchhhhHHhhccCcccCcCcc
Confidence            65554321 112245555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=2.2e-17  Score=183.85  Aligned_cols=127  Identities=27%  Similarity=0.335  Sum_probs=67.0

Q ss_pred             ceeecccccccCcCcccccccccCCceeecCCCccccccCcccC-CCCCccEEEccCccccccCCccccCCCCCcEeccc
Q 047985          489 ESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLL-KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLG  567 (930)
Q Consensus       489 ~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  567 (930)
                      +.+++++++++. +|..+..   .++.|+|++|+|++..+..+. .+++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~~-iP~~~~~---~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLPS---YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCCT---TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc-cCccCCC---CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            466666666653 4443322   356666666666654444444 55556666666666655555555555555555555


Q ss_pred             CccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcC
Q 047985          568 DNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRF  621 (930)
Q Consensus       568 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l  621 (930)
                      +|+|++..+..|..+++|++|+|++|++.+..+..+  ..+++|+.|+|++|++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l  148 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQI  148 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcC
Confidence            555555555555555555555555555554433322  3334444444444433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=6.3e-17  Score=166.49  Aligned_cols=159  Identities=23%  Similarity=0.305  Sum_probs=116.3

Q ss_pred             CEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCC
Q 047985          201 TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN  280 (930)
Q Consensus       201 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  280 (930)
                      +.++++++.++ .+|..+.  ++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45566666655 3444443  56777777777777666667777777777777777777666777777777888888888


Q ss_pred             CCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCch
Q 047985          281 RFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDL  360 (930)
Q Consensus       281 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~  360 (930)
                      +++...+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++...-..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            77766556677788888888888888877777788888888888888888877666778888888888888888765544


Q ss_pred             hH
Q 047985          361 DI  362 (930)
Q Consensus       361 ~~  362 (930)
                      ..
T Consensus       171 ~~  172 (220)
T 2v9t_B          171 KW  172 (220)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=1.2e-16  Score=165.48  Aligned_cols=159  Identities=23%  Similarity=0.241  Sum_probs=86.3

Q ss_pred             CCCCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCC
Q 047985           52 NIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF  131 (930)
Q Consensus        52 ~~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l  131 (930)
                      +...|+|++|.|...            .+. .++.  .+  .++|++|+|++|.+++. .|..+..+++|++|+|++|.+
T Consensus        15 ~~~~Cs~~~v~c~~~------------~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l   76 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSK------------RHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL   76 (229)
T ss_dssp             TTCEEETTEEECTTS------------CCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCEEeCCEeEccCC------------CcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC
Confidence            467899999999643            121 2222  11  25666666666666654 455566666666666666666


Q ss_pred             CccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCC
Q 047985          132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR  211 (930)
Q Consensus       132 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  211 (930)
                      .+..+..+..+++|++|+|++|                               .+++..+..+..+++|++|+|++|+++
T Consensus        77 ~~i~~~~~~~l~~L~~L~Ls~N-------------------------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~  125 (229)
T 3e6j_A           77 GALPVGVFDSLTQLTVLDLGTN-------------------------------QLTVLPSAVFDRLVHLKELFMCCNKLT  125 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSS-------------------------------CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcChhhcccCCCcCEEECCCC-------------------------------cCCccChhHhCcchhhCeEeccCCccc
Confidence            5333344455555555555555                               333333344445555555555555555


Q ss_pred             CCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCC
Q 047985          212 GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG  260 (930)
Q Consensus       212 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  260 (930)
                       .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus       126 -~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             -SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             -ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence             344455555555555555555554444444445555555555554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=5.1e-17  Score=167.21  Aligned_cols=159  Identities=22%  Similarity=0.275  Sum_probs=103.7

Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchh-hhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCC
Q 047985          202 TLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELP-TFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN  280 (930)
Q Consensus       202 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  280 (930)
                      ++++++|.++. +|..+.  +.+++|++++|.+++..+ ..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            55555555542 344332  234566666666665533 34566666666666666666555556666677777777777


Q ss_pred             CCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCch
Q 047985          281 RFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDL  360 (930)
Q Consensus       281 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~  360 (930)
                      ++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++.+..+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            77666666666777777777777777766666777777777777777777766677777777777888888877776654


Q ss_pred             hHH
Q 047985          361 DIF  363 (930)
Q Consensus       361 ~~~  363 (930)
                      ..+
T Consensus       172 ~~l  174 (220)
T 2v70_A          172 AWL  174 (220)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=1.8e-20  Score=220.07  Aligned_cols=211  Identities=18%  Similarity=0.124  Sum_probs=117.5

Q ss_pred             cCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCcc------ccCCchhhhhhCCCCCCEEE-cCCccCCC
Q 047985          116 INLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVE------LRKPSLGNLADKLTNLKELV-LGDVTISS  188 (930)
Q Consensus       116 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~------~~~~~l~~~l~~l~~L~~L~-L~~n~l~~  188 (930)
                      ..+++|+.|+|++|.+. .+|..+++|++|+.|++++|.......      ...+..|..+..+++|+.|+ ++.|.+  
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence            45666666666666665 566666666667666665541000000      00022333344444444444 222211  


Q ss_pred             CCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcC
Q 047985          189 PIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGN  268 (930)
Q Consensus       189 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  268 (930)
                               ..|+.+.+.+|.++.. +.     ..|+.|++++|.+++ +|. ++.+++|++|+|++|.++ .+|..++.
T Consensus       423 ---------~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          423 ---------DDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ---------chhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence                     1122222233333211 10     136666666666665 344 666667777777777766 56666777


Q ss_pred             CCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCcc-CcccccccccceeecccccccCCCccc---ccCCCCC
Q 047985          269 LASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGEL-PASFGNLRSLRTLDVYECKFSGQIPSS---LSNLTHL  344 (930)
Q Consensus       269 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L  344 (930)
                      +++|+.|+|++|++++ +| .++.+++|++|+|++|++++.. |..++.+++|++|+|++|.+++..|..   +..+++|
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L  562 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV  562 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence            7777777777777665 45 6677777777777777777665 667777777777777777776554321   2336777


Q ss_pred             CEEEc
Q 047985          345 SFLDF  349 (930)
Q Consensus       345 ~~L~L  349 (930)
                      +.|++
T Consensus       563 ~~L~l  567 (567)
T 1dce_A          563 SSILT  567 (567)
T ss_dssp             SEEEC
T ss_pred             CccCC
Confidence            77753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=6.9e-17  Score=190.68  Aligned_cols=191  Identities=24%  Similarity=0.276  Sum_probs=99.0

Q ss_pred             CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCC
Q 047985           94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL  173 (930)
Q Consensus        94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l  173 (930)
                      ..+..++++.+.+...   ..+..+++|++|++++|.+. .+| .++.+++|++|+|++|.+.        .++. +..+
T Consensus        21 ~~l~~l~l~~~~i~~~---~~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~--------~~~~-l~~l   86 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT--------DIKP-LTNL   86 (605)
T ss_dssp             HHHHHHHTTCSCTTSE---ECHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCC--------CCGG-GGGC
T ss_pred             HHHHHHhccCCCcccc---cchhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCC--------CChh-hccC
Confidence            3344455565555432   12456667777777777766 333 3666666777776666431        1111 4444


Q ss_pred             CCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEc
Q 047985          174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDL  253 (930)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  253 (930)
                      ++|++|+|++|.+.+.                          ..+..+++|++|+|++|.+.+.  ..+..+++|+.|+|
T Consensus        87 ~~L~~L~Ls~N~l~~l--------------------------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L  138 (605)
T 1m9s_A           87 KNLGWLFLDENKIKDL--------------------------SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYL  138 (605)
T ss_dssp             TTCCEEECCSSCCCCC--------------------------TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEEC
T ss_pred             CCCCEEECcCCCCCCC--------------------------hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEEC
Confidence            4444444444444431                          1344455555555555555432  23445555555555


Q ss_pred             cCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985          254 LQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG  332 (930)
Q Consensus       254 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~  332 (930)
                      ++|.+++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.+
T Consensus       139 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             CCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            55555533  345555555555555555554444  55555555555555555532  235555555555555555553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.6e-19  Score=211.83  Aligned_cols=202  Identities=23%  Similarity=0.251  Sum_probs=129.3

Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      +.|+.|+|++|+++ .+|..++.+.. |+.|++++|.....+|..           +..+.+.+.+|..+.++++|+.|+
T Consensus       349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~L~  415 (567)
T 1dce_A          349 EQLFRCELSVEKST-VLQSELESCKE-LQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKAVD  415 (567)
T ss_dssp             TTSSSCCCCHHHHH-HHHHHHHHHHH-HHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred             ccceeccCChhhHH-hhHHHHHHHHH-HHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcccCc
Confidence            56777777777775 56777777765 777777555421111110           011224455666667777777777


Q ss_pred             -ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccc
Q 047985          566 -LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASEL  644 (930)
Q Consensus       566 -Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~  644 (930)
                       ++.|.+.           .|+.+.+.+|.+.+..+        ..|+.|+|++|.+++ +|.  +..            
T Consensus       416 ~l~~n~~~-----------~L~~l~l~~n~i~~l~~--------~~L~~L~Ls~n~l~~-lp~--~~~------------  461 (567)
T 1dce_A          416 PMRAAYLD-----------DLRSKFLLENSVLKMEY--------ADVRVLHLAHKDLTV-LCH--LEQ------------  461 (567)
T ss_dssp             GGGHHHHH-----------HHHHHHHHHHHHHHHHH--------TTCSEEECTTSCCSS-CCC--GGG------------
T ss_pred             chhhcccc-----------hhhhhhhhcccccccCc--------cCceEEEecCCCCCC-CcC--ccc------------
Confidence             5655443           23334445555544321        136677777777764 442  211            


Q ss_pred             ccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccc
Q 047985          645 RYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCL  724 (930)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l  724 (930)
                                                        ++.|+.|+|++|+|+ .+|..|+.+++|+.|+|++|++++ +| .+
T Consensus       462 ----------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l  504 (567)
T 1dce_A          462 ----------------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GV  504 (567)
T ss_dssp             ----------------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GG
T ss_pred             ----------------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-cc
Confidence                                              234677777777777 777778888888888888888875 66 67


Q ss_pred             cccCCCCeeeCCCCcCcccC-CccccCCCCCCeeecCCCcccccCCCC
Q 047985          725 GNLTDLESLDLSNNRFSGQI-PQQLVELTFLEFFNVSDNHFTGPIPQG  771 (930)
Q Consensus       725 ~~L~~L~~LdLs~N~lsg~i-p~~l~~L~~L~~L~ls~N~L~g~iP~~  771 (930)
                      +++++|+.|+|++|++++.+ |..+..+++|+.|++++|+|+|.+|..
T Consensus       505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            88888888888888888776 778888888888888888888776643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=3.2e-16  Score=162.35  Aligned_cols=156  Identities=22%  Similarity=0.232  Sum_probs=123.1

Q ss_pred             CCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccC
Q 047985          200 LTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSL  279 (930)
Q Consensus       200 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  279 (930)
                      -+.++.+++.++ .+|..+.  ++|++|++++|.+++..|..+..+++|++|+|++|.++...+..|..+++|++|+|++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            455666666665 4454443  6788888888888877777788888888888888888765556678888888888888


Q ss_pred             CCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCc
Q 047985          280 NRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMD  359 (930)
Q Consensus       280 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~  359 (930)
                      |++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            8888777777888888888888888888 677788888888888888888887666778888899999999998887654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=7.4e-17  Score=179.49  Aligned_cols=158  Identities=23%  Similarity=0.137  Sum_probs=83.2

Q ss_pred             CCCEEEccCCCCCCCCccccc-CCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEc
Q 047985          199 SLTTLSLSGCDLRGRIPSSLG-NITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL  277 (930)
Q Consensus       199 ~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  277 (930)
                      .++.|+|++|++++..+..+. ++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            355555555555554444444 5555555555555555555555555555555555555555444445555555555555


Q ss_pred             cCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCccc---ccccccceeecccccccCCCcccccCCCC--CCEEEccCC
Q 047985          278 SLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASF---GNLRSLRTLDVYECKFSGQIPSSLSNLTH--LSFLDFSLN  352 (930)
Q Consensus       278 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~n  352 (930)
                      ++|++++..|..|..+++|+.|+|++|++++..+..+   ..+++|++|+|++|++++..+..+..++.  ++.|++++|
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            5555555555555555555555555555554333333   34555555555555555433344444443  244555555


Q ss_pred             CCCC
Q 047985          353 NFSG  356 (930)
Q Consensus       353 ~l~~  356 (930)
                      ++..
T Consensus       200 ~~~C  203 (361)
T 2xot_A          200 PLEC  203 (361)
T ss_dssp             CEEC
T ss_pred             CccC
Confidence            5543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=3.4e-16  Score=161.02  Aligned_cols=135  Identities=24%  Similarity=0.304  Sum_probs=92.2

Q ss_pred             CCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEc
Q 047985          198 SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL  277 (930)
Q Consensus       198 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  277 (930)
                      ++|++|++++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            46666666666666555556666667777777777766666666677777777777777776544455666777777777


Q ss_pred             cCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985          278 SLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG  332 (930)
Q Consensus       278 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~  332 (930)
                      ++|++++..|..|..+++|++|+|++|.+++..+..+..+++|++|++++|.+..
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            7777776666677777777777777777776666667777777777777776653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=2.2e-16  Score=159.54  Aligned_cols=64  Identities=20%  Similarity=0.308  Sum_probs=26.6

Q ss_pred             ccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCC
Q 047985          218 LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNR  281 (930)
Q Consensus       218 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  281 (930)
                      +..+++|++|++++|.+++..+..++.+++|++|++++|.+++..|..++.+++|++|++++|.
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            3344444444444444443333334444444444444444443333444444444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=2.9e-17  Score=198.89  Aligned_cols=90  Identities=21%  Similarity=0.255  Sum_probs=40.0

Q ss_pred             CcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCC
Q 047985          528 PDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCG  607 (930)
Q Consensus       528 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~  607 (930)
                      |..+..+..|+.|+|++|.+. .+|..+.++++|++|+|++|+|+ .+|..|+.+++|++|+|++|+|+ .+|..+  ..
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~  291 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GS  291 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cC
Confidence            334444444555555555544 33333344455555555555554 33444445555555555555544 223322  34


Q ss_pred             CCCceEEECCCCcCc
Q 047985          608 FPKLRIIDLSKNRFT  622 (930)
Q Consensus       608 l~~L~~LdLs~N~l~  622 (930)
                      +++|++|+|++|.++
T Consensus       292 l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT  306 (727)
T ss_dssp             GTTCSEEECCSSCCC
T ss_pred             CCCCCEEECCCCCCC
Confidence            445555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=9.8e-17  Score=161.30  Aligned_cols=113  Identities=24%  Similarity=0.347  Sum_probs=91.0

Q ss_pred             ccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeec
Q 047985          680 DILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNV  759 (930)
Q Consensus       680 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~l  759 (930)
                      +.|+.|+|++|+|++.+|..|+.+++|+.|+|++|++++..|..|+++++|++|||++|++++.+|..+..+++|++|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            45788889999998888999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             CCCcccccCCCCCCcCccCCcccCCCCCCCCCC
Q 047985          760 SDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRP  792 (930)
Q Consensus       760 s~N~L~g~iP~~~~~~~~~~~s~~gn~~Lcg~~  792 (930)
                      ++|+++|..|.......+....+.++...|+.|
T Consensus       134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            999999877632111112222345555566554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=4.4e-16  Score=157.32  Aligned_cols=153  Identities=20%  Similarity=0.318  Sum_probs=104.5

Q ss_pred             cCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhcc
Q 047985          116 INLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLT  195 (930)
Q Consensus       116 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  195 (930)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.                               +.  .+..+.
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-------------------------------~~--~~~~l~   85 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-------------------------------AT--NYNPIS   85 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-------------------------------CS--CCGGGT
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-------------------------------CC--cchhhh
Confidence            45566666666666666 444 46666666666666652                               22  123566


Q ss_pred             CCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCC-CCCCcchhhcCCCCCCE
Q 047985          196 YLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN-LSGELPNSIGNLASLEQ  274 (930)
Q Consensus       196 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~  274 (930)
                      .+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..++.+++|++|++++|. ++ .+| .+..+++|++
T Consensus        86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~  163 (197)
T 4ezg_A           86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKS  163 (197)
T ss_dssp             TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCE
T ss_pred             cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCE
Confidence            67777777777777776666777778888888888888877777778888888888888887 44 455 5777788888


Q ss_pred             EEccCCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985          275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS  307 (930)
Q Consensus       275 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  307 (930)
                      |++++|++++. + .+..+++|++|++++|++.
T Consensus       164 L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          164 LNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             EECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             EECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            88888877653 2 5677777777777777764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=1.7e-16  Score=168.07  Aligned_cols=167  Identities=23%  Similarity=0.301  Sum_probs=70.6

Q ss_pred             CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCC
Q 047985           94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL  173 (930)
Q Consensus        94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l  173 (930)
                      .+++.++++.+.+++  ++ .+..+++|++|++++|.++ .+| .++.+++|++|++++|.+        ..++. +.++
T Consensus        19 ~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i--------~~~~~-l~~l   84 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQI--------SDLSP-LKDL   84 (263)
T ss_dssp             HHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCC--------CCCGG-GTTC
T ss_pred             HHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCcc--------CCChh-hccC
Confidence            334444444444432  22 2444455555555555444 233 344444444444444432        11111 3333


Q ss_pred             CCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEc
Q 047985          174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDL  253 (930)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  253 (930)
                      ++|++|++++|.+++. |. +.. ++|++|++++|++++.  ..+..+++|++|++++|++++. + .+..+++|++|++
T Consensus        85 ~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L  157 (263)
T 1xeu_A           85 TKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL  157 (263)
T ss_dssp             SSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence            3333333333333331 11 111 4455555555544432  2344444555555555544433 1 3444444444444


Q ss_pred             cCCCCCCCcchhhcCCCCCCEEEccCCCCC
Q 047985          254 LQNNLSGELPNSIGNLASLEQVDLSLNRFL  283 (930)
Q Consensus       254 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  283 (930)
                      ++|.+++.  ..+..+++|+.|++++|.++
T Consensus       158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             CCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            44444433  33444444444444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=1.2e-15  Score=153.34  Aligned_cols=137  Identities=22%  Similarity=0.254  Sum_probs=116.0

Q ss_pred             cceeecccccccCcCcccccccccCCceeecCCCccccccCc-ccCCCCCccEEEccCccccccCCccccCCCCCcEecc
Q 047985          488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD-NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDL  566 (930)
Q Consensus       488 L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  566 (930)
                      -+.+++++|+++ .+|..+..   .+++|++++|++++..+. .+..+++|++|+|++|++++..|..|.++++|++|+|
T Consensus        10 ~~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            478889999885 56665543   489999999999866654 4788899999999999999988999999999999999


Q ss_pred             cCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHH
Q 047985          567 GDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF  630 (930)
Q Consensus       567 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~  630 (930)
                      ++|+|++..+..|..+++|++|+|++|++++..|..+  ..+++|++|+|++|++++..+..++
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~  147 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHH
Confidence            9999999988889999999999999999999887665  6789999999999999987775443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=4.4e-16  Score=164.82  Aligned_cols=169  Identities=27%  Similarity=0.314  Sum_probs=86.8

Q ss_pred             CCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccC
Q 047985          117 NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTY  196 (930)
Q Consensus       117 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  196 (930)
                      .+.+++.++++++.+.+. + .+..+++|++|++++|.+.        .++ .+..+++|++|++++|.+++..+  +.+
T Consensus        17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~--------~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~   83 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ--------SLA-GMQFFTNLKELHLSHNQISDLSP--LKD   83 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC--------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc--------cch-HHhhCCCCCEEECCCCccCCChh--hcc
Confidence            355667777777777743 3 4667777888888777431        222 34555666666666666555433  555


Q ss_pred             CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985          197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD  276 (930)
Q Consensus       197 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  276 (930)
                      +++|++|++++|++++. |. +.. ++|++|++++|.+++.  +.+..+++|++|++++|++++. + .++.+++|++|+
T Consensus        84 l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~  156 (263)
T 1xeu_A           84 LTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLD  156 (263)
T ss_dssp             CSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEE
Confidence            55555555555555532 21 112 4555555555555432  1344444555555555544432 2 344444444444


Q ss_pred             ccCCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985          277 LSLNRFLGKVPSSLGNLTQLHWLSLASNDFS  307 (930)
Q Consensus       277 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  307 (930)
                      +++|++++.  ..+..+++|+.|++++|.++
T Consensus       157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             CCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            444444433  33444444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=1.2e-14  Score=142.69  Aligned_cols=132  Identities=25%  Similarity=0.285  Sum_probs=64.9

Q ss_pred             CCCCEEEccCCCCC-CCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985          198 SSLTTLSLSGCDLR-GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD  276 (930)
Q Consensus       198 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  276 (930)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            34444444444444 34444444445555555555554443  3444555555555555555544454444555555555


Q ss_pred             ccCCCCCCCC-CCCCCCCcCCcEEEccCCCCCCccC---cccccccccceeeccccccc
Q 047985          277 LSLNRFLGKV-PSSLGNLTQLHWLSLASNDFSGELP---ASFGNLRSLRTLDVYECKFS  331 (930)
Q Consensus       277 Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~n~l~  331 (930)
                      +++|++++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            5555554321 1344555555555555555553332   24455555555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=4.1e-14  Score=142.06  Aligned_cols=138  Identities=23%  Similarity=0.243  Sum_probs=114.8

Q ss_pred             cceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEeccc
Q 047985          488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLG  567 (930)
Q Consensus       488 L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  567 (930)
                      -+.+++++|.++ .+|..+.  . .|++|++++|+++ .+|..+..+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        12 ~~~l~~~~~~l~-~ip~~~~--~-~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           12 DTVVRCSNKGLK-VLPKGIP--R-DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--T-TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCCC-cCCCCCC--C-CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            367888888887 5665443  2 4899999999998 778888889999999999999998888889999999999999


Q ss_pred             CccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhh
Q 047985          568 DNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC  632 (930)
Q Consensus       568 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~  632 (930)
                      +|+|+++.|..|..+++|++|+|++|++++..+..+  ..+++|+.|++++|++.+.....++..
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~l~~  149 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQWLSD  149 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHHHHH
Confidence            999999988889999999999999999997765444  678999999999999987665544443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=1.9e-14  Score=141.22  Aligned_cols=134  Identities=25%  Similarity=0.245  Sum_probs=108.3

Q ss_pred             CCCCCCEEEcCCccCC-CCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCE
Q 047985          172 KLTNLKELVLGDVTIS-SPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE  250 (930)
Q Consensus       172 ~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  250 (930)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3467777777777776 66777778888888888888888765  67888888889999888888877877778888999


Q ss_pred             EEccCCCCCCCc-chhhcCCCCCCEEEccCCCCCCCCC---CCCCCCcCCcEEEccCCCCC
Q 047985          251 LDLLQNNLSGEL-PNSIGNLASLEQVDLSLNRFLGKVP---SSLGNLTQLHWLSLASNDFS  307 (930)
Q Consensus       251 L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls~N~l~  307 (930)
                      |++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            999999888642 2678888899999999998886544   47888889999999988876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.1e-14  Score=139.89  Aligned_cols=125  Identities=23%  Similarity=0.240  Sum_probs=57.7

Q ss_pred             CCCEEEccCCCCC-CCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEc
Q 047985          199 SLTTLSLSGCDLR-GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL  277 (930)
Q Consensus       199 ~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  277 (930)
                      +|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            4444444444444 34444444444455555555444443  34444455555555555554444444444555555555


Q ss_pred             cCCCCCCC-CCCCCCCCcCCcEEEccCCCCCCccC---cccccccccceeec
Q 047985          278 SLNRFLGK-VPSSLGNLTQLHWLSLASNDFSGELP---ASFGNLRSLRTLDV  325 (930)
Q Consensus       278 s~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L  325 (930)
                      ++|++++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            55554432 22344444444444444444443322   23444444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.52  E-value=1.2e-14  Score=159.52  Aligned_cols=102  Identities=17%  Similarity=0.175  Sum_probs=74.9

Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCcc-EEEccCccccccCCccccCCCCCcEe
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILK-VIDLSDNLLQGRIPRSLANCSNLEFL  564 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L  564 (930)
                      ++|+.+++++|+++...+.+|.++.+ |+.++|.+| ++..-+.+|.++.+|+ .+++.+ +++.+.+.+|.+|++|+.+
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~-L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKY-LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTT-CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCC-CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            67888888887777666667777775 888888776 6544456677777777 777777 6666666777888888888


Q ss_pred             cccCccccccCcccccCCCCCcEEEc
Q 047985          565 DLGDNQIRDIFPSWLGTLPDLNVLIL  590 (930)
Q Consensus       565 ~Ls~N~l~~~~p~~l~~l~~L~~L~L  590 (930)
                      ++++|+++.+.+..|.++++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            88777777777777777777777653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=1.6e-14  Score=138.56  Aligned_cols=129  Identities=22%  Similarity=0.243  Sum_probs=104.6

Q ss_pred             CCCCCEEEcCCccCC-CCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEE
Q 047985          173 LTNLKELVLGDVTIS-SPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL  251 (930)
Q Consensus       173 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  251 (930)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            456777888887877 67777778888888888888888765  678888889999999998888788888888889999


Q ss_pred             EccCCCCCCC-cchhhcCCCCCCEEEccCCCCCCCCC---CCCCCCcCCcEEEccC
Q 047985          252 DLLQNNLSGE-LPNSIGNLASLEQVDLSLNRFLGKVP---SSLGNLTQLHWLSLAS  303 (930)
Q Consensus       252 ~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls~  303 (930)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999988863 34778888999999999998886654   4678888899888763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=1.1e-14  Score=159.73  Aligned_cols=197  Identities=12%  Similarity=0.073  Sum_probs=95.9

Q ss_pred             CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCC----CCCchhhhhcCCC--
Q 047985          173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK----LSDELPTFIGTLG--  246 (930)
Q Consensus       173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----l~~~~p~~l~~l~--  246 (930)
                      +++|++|++.+ .++...+.+|.+|++|++|++.+|.+....+.+|.++.++..+.+..+.    .......+|.++.  
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            56666666665 5555555556666666666666666554455555555555555443311    0111111121222  


Q ss_pred             ------------------------CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEcc
Q 047985          247 ------------------------SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLA  302 (930)
Q Consensus       247 ------------------------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  302 (930)
                                              +++.+.+.++-...........+++|+.|+|++|+++...+..|.++++|+.|+|.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence                                    22222222221100000001125566666666666555444556666666666666


Q ss_pred             CCCCCCccCcccccccccc-eeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEE
Q 047985          303 SNDFSGELPASFGNLRSLR-TLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLF  374 (930)
Q Consensus       303 ~N~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~  374 (930)
                      +| ++...+.+|.++++|+ .+++.+ .++...+..|.++++|+.++++.|.++. ++...| .++++|+.++
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~aF-~~~~~L~~ly  327 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT-LGDELF-GNGVPSKLIY  327 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE-ECTTTT-CTTCCCCEEE
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc-cchhhh-cCCcchhhhc
Confidence            55 5444455566666666 666655 4444444556666666666665555542 232333 5555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.49  E-value=1.9e-13  Score=137.12  Aligned_cols=134  Identities=28%  Similarity=0.307  Sum_probs=89.1

Q ss_pred             cEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCC
Q 047985          225 IHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASN  304 (930)
Q Consensus       225 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  304 (930)
                      +.+++++|.++. +|..+  .++|++|++++|.++ .+|..|..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            345555555542 23322  145666666666666 55566677777777777777777666666777777777777777


Q ss_pred             CCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhH
Q 047985          305 DFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDI  362 (930)
Q Consensus       305 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~  362 (930)
                      ++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++........
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~  146 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW  146 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHH
Confidence            7776666677777777777777777775555567777888888888888776555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=2.5e-13  Score=134.42  Aligned_cols=113  Identities=21%  Similarity=0.233  Sum_probs=60.3

Q ss_pred             CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecc
Q 047985          247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY  326 (930)
Q Consensus       247 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  326 (930)
                      +|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            44444444444443333344455555555555555554444445555555555555555554444445555555556665


Q ss_pred             cccccCCCcccccCCCCCCEEEccCCCCCCCCc
Q 047985          327 ECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMD  359 (930)
Q Consensus       327 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~  359 (930)
                      +|++++..+..+..+++|++|++++|++.+..+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            555554444445556666666666666665544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.46  E-value=4.7e-13  Score=132.38  Aligned_cols=133  Identities=23%  Similarity=0.263  Sum_probs=114.7

Q ss_pred             CCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccC
Q 047985          200 LTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSL  279 (930)
Q Consensus       200 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  279 (930)
                      .+.+++++++++. +|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            5788999998874 45444  36899999999999988777889999999999999999977777789999999999999


Q ss_pred             CCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCc
Q 047985          280 NRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP  335 (930)
Q Consensus       280 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  335 (930)
                      |++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99998877788999999999999999997766677889999999999999987654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=4.6e-15  Score=149.87  Aligned_cols=153  Identities=22%  Similarity=0.320  Sum_probs=100.7

Q ss_pred             CCCCCcEecccCccccccCcc------cccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHH
Q 047985          557 NCSNLEFLDLGDNQIRDIFPS------WLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF  630 (930)
Q Consensus       557 ~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~  630 (930)
                      ....++.++++.+.+++.+|.      .+..+++|++|+|++|++++ +|   .+..+++|+.|++++|.++ .+|.. +
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~---~~~~l~~L~~L~l~~n~l~-~l~~~-~   89 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS---SLSGMENLRILSLGRNLIK-KIENL-D   89 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC---CHHHHTTCCEEEEEEEEEC-SCSSH-H
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc---ccccCCCCCEEECCCCCcc-cccch-h
Confidence            344555555555555555544      55566666666666666655 22   2244566666666666665 34422 1


Q ss_pred             hhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceee
Q 047985          631 QCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILS  710 (930)
Q Consensus       631 ~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~  710 (930)
                      ..                                              ++.|+.|+|++|++++ +| .++.+++|+.|+
T Consensus        90 ~~----------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           90 AV----------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             HH----------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             hc----------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            11                                              2347788888888876 45 578888888888


Q ss_pred             ccCccccccCc-ccccccCCCCeeeCCCCcCcccCCcc----------ccCCCCCCeeecCCCccc
Q 047985          711 LADNSLHGHIP-SCLGNLTDLESLDLSNNRFSGQIPQQ----------LVELTFLEFFNVSDNHFT  765 (930)
Q Consensus       711 Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~lsg~ip~~----------l~~L~~L~~L~ls~N~L~  765 (930)
                      |++|++++..+ ..++.+++|++|++++|++++.+|..          +..++.|++||  +|.++
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            88888885332 46888888888888888888877753          77788888887  66655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=6.6e-13  Score=130.24  Aligned_cols=90  Identities=20%  Similarity=0.224  Sum_probs=83.6

Q ss_pred             ccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeec
Q 047985          680 DILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNV  759 (930)
Q Consensus       680 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~l  759 (930)
                      ..++.|+|++|+|++..|..|+.+++|+.|+|++|+|++..|..|+++++|++|+|++|+|++..|..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            45899999999999999999999999999999999999888888899999999999999999877778999999999999


Q ss_pred             CCCcccccCC
Q 047985          760 SDNHFTGPIP  769 (930)
Q Consensus       760 s~N~L~g~iP  769 (930)
                      ++|++.+..+
T Consensus       110 ~~N~~~c~c~  119 (170)
T 3g39_A          110 LNNPWDCACS  119 (170)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCCCCCch
Confidence            9999987655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.36  E-value=1.6e-11  Score=137.52  Aligned_cols=266  Identities=11%  Similarity=0.054  Sum_probs=176.4

Q ss_pred             CCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchh-hhh
Q 047985           92 KLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLG-NLA  170 (930)
Q Consensus        92 ~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~-~~l  170 (930)
                      .+..++.+.+..+ ++.. -..+|.++ +|+.++|..+ +...-...|.++ +|+.+.+..+ +        ..++ ..+
T Consensus       111 ~~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~-l--------~~I~~~aF  176 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST-L--------EQLKEDIF  176 (401)
T ss_dssp             ECSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT-C--------CEECSSTT
T ss_pred             ecCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC-c--------cEehHHHh
Confidence            3466777777653 2211 12345554 6888888765 553334455553 6888888754 1        1221 356


Q ss_pred             hCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCE
Q 047985          171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE  250 (930)
Q Consensus       171 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  250 (930)
                      .++++|+.+++..|.++......|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.....+|.+ .+|+.
T Consensus       177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~  252 (401)
T 4fdw_A          177 YYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT  252 (401)
T ss_dssp             TTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred             hCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence            7788888888888777766666665 578888888744 66555667788888888888764 45445556666 67888


Q ss_pred             EEccCCCCCCCcchhhcCCCCCCEEEccCCCCC-----CCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeec
Q 047985          251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFL-----GKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV  325 (930)
Q Consensus       251 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  325 (930)
                      +.+. +.++..-+.+|.++++|+.+++.+|.+.     ...+..|.++++|+.++|. +.++..-..+|.++++|+.+.|
T Consensus       253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred             EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence            8884 4455455667888888888888877654     3445678888888888887 4466566677888888888888


Q ss_pred             ccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhcc-ccccEEEccCCccc
Q 047985          326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLSTNRLS  381 (930)
Q Consensus       326 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~l~  381 (930)
                      ..+ ++..-+..|.++ +|+.+++.+|.... ++...| ..+ ..+..|.+..+.+.
T Consensus       331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~-l~~~~F-~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ-VFEKVW-YGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CTT-CCEECTTSSSSS-CCCEEEECCSSCCB-CCCSSC-CCSCTTCCEEEECGGGHH
T ss_pred             Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcc-cccccc-cCCCCCccEEEeCHHHHH
Confidence            554 554555677788 88888888887653 222333 334 46778888776543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=7.9e-13  Score=130.65  Aligned_cols=87  Identities=21%  Similarity=0.210  Sum_probs=36.4

Q ss_pred             hcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCc--ccccccccceeecccccccCCCccc----cc
Q 047985          266 IGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPA--SFGNLRSLRTLDVYECKFSGQIPSS----LS  339 (930)
Q Consensus       266 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~----l~  339 (930)
                      ++.+++|++|++++|++++..+..+..+++|++|++++|.++ .+|.  .+..+++|++|++++|.++ .+|..    +.
T Consensus        60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~  137 (176)
T 1a9n_A           60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIY  137 (176)
T ss_dssp             CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHH
T ss_pred             cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHH
Confidence            333444444444444443322222234444444444444443 2222  3444444444444444444 22322    44


Q ss_pred             CCCCCCEEEccCCCC
Q 047985          340 NLTHLSFLDFSLNNF  354 (930)
Q Consensus       340 ~l~~L~~L~Ls~n~l  354 (930)
                      .+++|+.|+++.|..
T Consensus       138 ~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          138 KVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HCTTCSEETTEECCH
T ss_pred             HCCccceeCCCcCCH
Confidence            455555555555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=9.1e-13  Score=130.18  Aligned_cols=129  Identities=21%  Similarity=0.224  Sum_probs=58.8

Q ss_pred             CCCCCCEEEccCCCCCCCCcccccCCC-CCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCE
Q 047985          196 YLSSLTTLSLSGCDLRGRIPSSLGNIT-RLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQ  274 (930)
Q Consensus       196 ~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  274 (930)
                      ++.+|++|++++|+++. +|. +..+. +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            34455555555555542 222 22222 455555555555433  34444555555555555554332233344555555


Q ss_pred             EEccCCCCCCCCCC--CCCCCcCCcEEEccCCCCCCccCcc----cccccccceeecccccc
Q 047985          275 VDLSLNRFLGKVPS--SLGNLTQLHWLSLASNDFSGELPAS----FGNLRSLRTLDVYECKF  330 (930)
Q Consensus       275 L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~n~l  330 (930)
                      |++++|++. .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|++|++++|..
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            555555543 2232  4444555555555555544 22332    44445555555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=3.7e-15  Score=150.58  Aligned_cols=110  Identities=20%  Similarity=0.260  Sum_probs=42.6

Q ss_pred             cccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCC
Q 047985          217 SLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL  296 (930)
Q Consensus       217 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  296 (930)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            33334444444444444333 22 3333344444444444443 233333333444444444444432 12 23334444


Q ss_pred             cEEEccCCCCCCccC-cccccccccceeeccccccc
Q 047985          297 HWLSLASNDFSGELP-ASFGNLRSLRTLDVYECKFS  331 (930)
Q Consensus       297 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~  331 (930)
                      ++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            444444444432111 23333444444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=2.3e-12  Score=126.77  Aligned_cols=90  Identities=21%  Similarity=0.231  Sum_probs=81.0

Q ss_pred             ccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeec
Q 047985          680 DILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNV  759 (930)
Q Consensus       680 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~l  759 (930)
                      ..++.|+|++|+|++.+|..|+++++|+.|+|++|+|++..+..|+++++|+.|||++|+|++..|..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            45899999999999999999999999999999999999877777899999999999999999776667999999999999


Q ss_pred             CCCcccccCC
Q 047985          760 SDNHFTGPIP  769 (930)
Q Consensus       760 s~N~L~g~iP  769 (930)
                      ++|++....+
T Consensus       113 ~~N~~~c~~~  122 (174)
T 2r9u_A          113 YNNPWDCECR  122 (174)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCcccccc
Confidence            9999986443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=4.5e-12  Score=124.25  Aligned_cols=109  Identities=21%  Similarity=0.264  Sum_probs=69.8

Q ss_pred             CceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC
Q 047985          513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS  592 (930)
Q Consensus       513 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  592 (930)
                      .+.+++++|.++ .+|..+.  +.|++|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            445555555555 3444332  5566666666666666666666667777777777777766666666777777777777


Q ss_pred             CcccccCCCCCccCCCCCceEEECCCCcCcccCC
Q 047985          593 NKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLP  626 (930)
Q Consensus       593 N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  626 (930)
                      |++++..+..+  ..+++|++|+|++|++++..+
T Consensus        88 N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAF--DNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTT--TTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHh--cCCCCCCEEEeCCCCCCCCch
Confidence            77766554433  556777777777777776554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.29  E-value=1e-10  Score=131.10  Aligned_cols=241  Identities=14%  Similarity=0.128  Sum_probs=147.2

Q ss_pred             CCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchh-hhhhCCCCCCEEEcCCccCCCCCchhccC
Q 047985          118 LSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLG-NLADKLTNLKELVLGDVTISSPIPHNLTY  196 (930)
Q Consensus       118 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  196 (930)
                      +..++.+.+.++ +...-...|.++ +|+.+++..+-         ..++ ..+.+ .+|+.+.+.. .+....+.+|.+
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~i---------~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~  178 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEGL---------KSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYY  178 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTTC---------CEECTTTTTT-CCCCEEECCT-TCCEECSSTTTT
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCCc---------cEECHHhcCC-CCceEEEeCC-CccEehHHHhhC
Confidence            466677776543 332334455554 68888877661         1122 12333 3577777765 555555667777


Q ss_pred             CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985          197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD  276 (930)
Q Consensus       197 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  276 (930)
                      |++|+.+++..|.++.....+|. ..+|+.+.+..+ ++.....+|.++++|+.+.+..+ ++..-..+|.+ .+|+.+.
T Consensus       179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred             cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence            77888888877777754444454 577777777743 55555667777777777777764 44334445555 6777777


Q ss_pred             ccCCCCCCCCCCCCCCCcCCcEEEccCCCCC-----CccCcccccccccceeecccccccCCCcccccCCCCCCEEEccC
Q 047985          277 LSLNRFLGKVPSSLGNLTQLHWLSLASNDFS-----GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSL  351 (930)
Q Consensus       277 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  351 (930)
                      +. +.++.....+|.++++|+.+++.+|.+.     ...+..|.+|++|+.+++.+ .++......|.++++|+.+.+..
T Consensus       255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred             eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence            74 3455455667777777777777776654     24455677777777777763 35544455666777777777754


Q ss_pred             CCCCCCCchhHHhhccccccEEEccCCccc
Q 047985          352 NNFSGKMDLDIFLVNHKLLYHLFLSTNRLS  381 (930)
Q Consensus       352 n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~  381 (930)
                      + ++ .+....| .++ +|+.+++++|...
T Consensus       333 ~-l~-~I~~~aF-~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          333 N-VT-QINFSAF-NNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             T-CC-EECTTSS-SSS-CCCEEEECCSSCC
T ss_pred             c-cc-EEcHHhC-CCC-CCCEEEEcCCCCc
Confidence            4 32 2333333 455 6666666666443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=1.2e-11  Score=121.61  Aligned_cols=107  Identities=19%  Similarity=0.250  Sum_probs=61.4

Q ss_pred             ceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCC
Q 047985          514 SILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSN  593 (930)
Q Consensus       514 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  593 (930)
                      +.+++++|+++ .+|..+.  +.|++|+|++|++++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34455555543 3444332  45555555555555555555666666666666666666655555566666666666666


Q ss_pred             cccccCCCCCccCCCCCceEEECCCCcCcccC
Q 047985          594 KFHGLIREPKTDCGFPKLRIIDLSKNRFTGKL  625 (930)
Q Consensus       594 ~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i  625 (930)
                      +|++..+..+  ..+++|++|+|++|++....
T Consensus        92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTT--TTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHh--ccccCCCEEEeCCCCccccc
Confidence            6665543323  45666777777777776443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.27  E-value=7.2e-11  Score=132.72  Aligned_cols=78  Identities=18%  Similarity=0.151  Sum_probs=42.4

Q ss_pred             CceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC
Q 047985          513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS  592 (930)
Q Consensus       513 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  592 (930)
                      |+.+.+..+ ++..-..+|.++.+|+.++|.++ ++.+-..+|.+|++|+.+++..+ ++.+...+|.++++|+.+++..
T Consensus       299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            444444432 32222334555555666665433 44444556666666666666555 5555556666666666666654


Q ss_pred             C
Q 047985          593 N  593 (930)
Q Consensus       593 N  593 (930)
                      +
T Consensus       376 ~  376 (394)
T 4fs7_A          376 R  376 (394)
T ss_dssp             G
T ss_pred             C
Confidence            3

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.21  E-value=3.3e-10  Score=127.30  Aligned_cols=131  Identities=11%  Similarity=-0.011  Sum_probs=61.4

Q ss_pred             chhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCC
Q 047985          191 PHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLA  270 (930)
Q Consensus       191 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  270 (930)
                      ..+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|.++.
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~  140 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred             HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence            355666667777766533 44344455666666666666543 33333445555566655554432 2222233444443


Q ss_pred             CCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeeccc
Q 047985          271 SLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYE  327 (930)
Q Consensus       271 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  327 (930)
                      .++.......  ......+|.++++|+.+.+.++. .......|.++.+|+.+++..
T Consensus       141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCT
T ss_pred             ccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCC
Confidence            3222222211  11222445555555555554332 223333444555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.16  E-value=1.3e-12  Score=145.04  Aligned_cols=86  Identities=29%  Similarity=0.355  Sum_probs=36.5

Q ss_pred             CCCCEEEccCCCCCCC----CcccccCCCCCcEEEccCCCCCCc----hhhhhcCCCCCCEEEccCCCCCCC----cchh
Q 047985          198 SSLTTLSLSGCDLRGR----IPSSLGNITRLIHLDLSFNKLSDE----LPTFIGTLGSLKELDLLQNNLSGE----LPNS  265 (930)
Q Consensus       198 ~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~  265 (930)
                      ++|++|+|++|.++..    ++..+..+++|++|+|++|.+++.    ++..+...++|++|+|++|.++..    ++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            4444555554444321    222233444455555555544432    123334444455555555544431    2222


Q ss_pred             hcCCCCCCEEEccCCCCC
Q 047985          266 IGNLASLEQVDLSLNRFL  283 (930)
Q Consensus       266 l~~l~~L~~L~Ls~n~l~  283 (930)
                      +...++|++|+|++|.++
T Consensus       235 L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          235 AREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHCSSCCEEECTTSSCC
T ss_pred             HHhCCCCCEEeccCCCCC
Confidence            333344444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.12  E-value=1.7e-12  Score=144.11  Aligned_cols=135  Identities=22%  Similarity=0.239  Sum_probs=68.1

Q ss_pred             CCCCEEEccCCCCCCCCcccc-cCCCCCcEEEccCCCCCCchhhhh-----cCCCCCCEEEccCCCCCC----Ccchhhc
Q 047985          198 SSLTTLSLSGCDLRGRIPSSL-GNITRLIHLDLSFNKLSDELPTFI-----GTLGSLKELDLLQNNLSG----ELPNSIG  267 (930)
Q Consensus       198 ~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~----~~p~~l~  267 (930)
                      ++|++|+|++|.++......+ ..+++|++|+|++|.++......+     ...++|++|+|++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            455555555555543211111 123455666666666654433332     234566666666666543    2333445


Q ss_pred             CCCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCCCCCc----cCcccccccccceeecccccccC
Q 047985          268 NLASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASNDFSGE----LPASFGNLRSLRTLDVYECKFSG  332 (930)
Q Consensus       268 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~  332 (930)
                      .+++|++|+|++|.++..    ++..+...++|++|+|++|.++..    ++..+...++|++|+|++|.++.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            566666666666665432    233344555666666666666532    22233344556666666665553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.09  E-value=1.4e-10  Score=128.10  Aligned_cols=86  Identities=19%  Similarity=0.200  Sum_probs=65.9

Q ss_pred             ccccEEEccc-ccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeee
Q 047985          680 DILTAVILSS-NRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFN  758 (930)
Q Consensus       680 ~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~  758 (930)
                      ..|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|++|++|+.|||++|+|++..|..+..++ |+.|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            3477888875 888877777788888888888888888877777788888888888888888766555566565 88888


Q ss_pred             cCCCcccc
Q 047985          759 VSDNHFTG  766 (930)
Q Consensus       759 ls~N~L~g  766 (930)
                      |++|++..
T Consensus       110 l~~N~~~c  117 (347)
T 2ifg_A          110 LSGNPLHC  117 (347)
T ss_dssp             CCSSCCCC
T ss_pred             eeCCCccC
Confidence            88887764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=3.7e-10  Score=124.59  Aligned_cols=113  Identities=20%  Similarity=0.177  Sum_probs=72.5

Q ss_pred             eeecCCC-ccccccCcccCCCCCccEEEccC-ccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC
Q 047985          515 ILDLQHN-KFSGTIPDNLLKGNILKVIDLSD-NLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS  592 (930)
Q Consensus       515 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  592 (930)
                      .++++++ +++ .+|. +..+++|++|+|++ |+|++..+..|.++++|+.|+|++|+|+++.|..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3455555 555 3555 66666666777764 666666666677777777777777777777666777777777777777


Q ss_pred             CcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhh
Q 047985          593 NKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC  632 (930)
Q Consensus       593 N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~  632 (930)
                      |+|++..+..+  ..++ |+.|+|++|++.......++..
T Consensus        90 N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~l~~~~~  126 (347)
T 2ifg_A           90 NALESLSWKTV--QGLS-LQELVLSGNPLHCSCALRWLQR  126 (347)
T ss_dssp             SCCSCCCSTTT--CSCC-CCEEECCSSCCCCCGGGHHHHH
T ss_pred             CccceeCHHHc--ccCC-ceEEEeeCCCccCCCccHHHHH
Confidence            77776554433  2233 7777777777776554444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.90  E-value=5.9e-08  Score=108.79  Aligned_cols=85  Identities=15%  Similarity=0.175  Sum_probs=38.7

Q ss_pred             ccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCC
Q 047985          530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFP  609 (930)
Q Consensus       530 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  609 (930)
                      .|.++.+|+.++|.++ ++.+-..+|.+|.+|+.+.|..+ ++.+...+|.++.+|+.+++.++.....     .+....
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-----~~~~~~  378 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-----AISTDS  378 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-----TCBCCC
T ss_pred             eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-----hhhccC
Confidence            4444555555555433 44344455666666666666433 5555555566666666666666543221     113345


Q ss_pred             CceEEECCCCcC
Q 047985          610 KLRIIDLSKNRF  621 (930)
Q Consensus       610 ~L~~LdLs~N~l  621 (930)
                      .|+.+.+..|.+
T Consensus       379 ~L~~i~i~~~~~  390 (394)
T 4gt6_A          379 GLQNLPVAPGSI  390 (394)
T ss_dssp             CC----------
T ss_pred             CCCEEEeCCCCE
Confidence            566666655443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.87  E-value=1.4e-07  Score=105.75  Aligned_cols=309  Identities=13%  Similarity=0.135  Sum_probs=163.3

Q ss_pred             hhhcCCC-CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCC---CCCCCCCCCCCCcCCcEEEccCCCCCCccCcccc
Q 047985          240 TFIGTLG-SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNR---FLGKVPSSLGNLTQLHWLSLASNDFSGELPASFG  315 (930)
Q Consensus       240 ~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  315 (930)
                      .+|.+++ .|+.+.+..+ ++..-..+|.++++|+.+.+..|.   ++.....+|.++.+|+.+.+..+ ++......|.
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~  134 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH  134 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred             hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence            4566653 4777777643 554445667777777777776653   44334456666667766665443 3333344556


Q ss_pred             cccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCcccc
Q 047985          316 NLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRF  395 (930)
Q Consensus       316 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  395 (930)
                      .+.+|+.+.+..+ +.......|..+..|+.+.+..+ ++ .+....|  ....|+.+.+..+                 
T Consensus       135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF--~~~~l~~i~ip~~-----------------  192 (394)
T 4gt6_A          135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAF--TGTALTQIHIPAK-----------------  192 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTT--TTCCCSEEEECTT-----------------
T ss_pred             hhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccc--cccceeEEEECCc-----------------
Confidence            6666666666433 22222334555566666655433 11 1111111  1123333333322                 


Q ss_pred             ceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCC
Q 047985          396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTG  475 (930)
Q Consensus       396 ~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g  475 (930)
                              ...--...+..+..++......+..... ...+.. ........                   ..       
T Consensus       193 --------~~~i~~~af~~c~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-------------------~~-------  236 (394)
T 4gt6_A          193 --------VTRIGTNAFSECFALSTITSDSESYPAI-DNVLYE-KSANGDYA-------------------LI-------  236 (394)
T ss_dssp             --------CCEECTTTTTTCTTCCEEEECCSSSCBS-SSCEEE-ECTTSCEE-------------------EE-------
T ss_pred             --------ccccccchhhhccccceecccccccccc-cceeec-cccccccc-------------------cc-------
Confidence                    1111112334444555544433322110 000000 00000000                   00       


Q ss_pred             CCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccc
Q 047985          476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSL  555 (930)
Q Consensus       476 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  555 (930)
                      ..+    .. ..+..+.+.. .++..-..+|..+.. |+.+.+..+..+ .-...|.++..|+.+.+. +.++.....+|
T Consensus       237 ~~~----~~-~~~~~~~ip~-~v~~i~~~aF~~c~~-L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF  307 (394)
T 4gt6_A          237 RYP----SQ-REDPAFKIPN-GVARIETHAFDSCAY-LASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVF  307 (394)
T ss_dssp             ECC----TT-CCCSEEECCT-TEEEECTTTTTTCSS-CCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTT
T ss_pred             ccc----cc-cccceEEcCC-cceEcccceeeeccc-ccEEecccccce-ecCcccccccccccccCC-CcccccCceee
Confidence            000    00 1233333321 222233445666664 888887665432 334567778888888886 45665666789


Q ss_pred             cCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcC
Q 047985          556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRF  621 (930)
Q Consensus       556 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l  621 (930)
                      .+|.+|+.++|..+ ++.+...+|.++.+|+.+.|..+ ++.+-  ..++.++++|+.+++.++..
T Consensus       308 ~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~--~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          308 AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP--ESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC--GGGGTTCTTCCEEEESSCHH
T ss_pred             cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh--HhHhhCCCCCCEEEECCcee
Confidence            99999999999764 66677778899999999999654 44442  23457788999999988754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=5.1e-09  Score=115.06  Aligned_cols=39  Identities=18%  Similarity=0.299  Sum_probs=18.6

Q ss_pred             CcCCcEEEccCCCCCCc----cCcccccccccceeeccccccc
Q 047985          293 LTQLHWLSLASNDFSGE----LPASFGNLRSLRTLDVYECKFS  331 (930)
Q Consensus       293 l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~  331 (930)
                      +++|++|+|+.|.+.+.    ++..+..+++|+.|+++.|.++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            44555555555555432    2222334455555555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=3.3e-09  Score=116.59  Aligned_cols=40  Identities=20%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             CCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCCCCC
Q 047985          269 LASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASNDFSG  308 (930)
Q Consensus       269 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  308 (930)
                      +++|++|+|+.|.+.+.    ++..+..+++|+.|+|++|.++.
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            44555555555554432    22333445556666666555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.51  E-value=4.9e-06  Score=92.52  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=55.3

Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      ..|+.+.+..+ ++..-..+|.++.. |+.+.+..+ +...-...|.++.+|+.+.+.++.++..-..+|.+|.+|+.++
T Consensus       240 ~~L~~i~lp~~-v~~I~~~aF~~~~~-l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~  316 (379)
T 4h09_A          240 KALDEIAIPKN-VTSIGSFLLQNCTA-LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT  316 (379)
T ss_dssp             SSCCEEEECTT-CCEECTTTTTTCTT-CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             ccceEEEcCCC-ccEeCccccceeeh-hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence            34444444433 33233334444443 555555433 3322233455566666666666666655556666666666666


Q ss_pred             ccCccccccCcccccCCCCCcEEEccCC
Q 047985          566 LGDNQIRDIFPSWLGTLPDLNVLILKSN  593 (930)
Q Consensus       566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  593 (930)
                      |..+ ++.+...+|.++.+|+.+.+..+
T Consensus       317 lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          317 LPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            6543 55555556666666666666443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.44  E-value=7.1e-06  Score=91.21  Aligned_cols=139  Identities=16%  Similarity=0.156  Sum_probs=78.6

Q ss_pred             cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985          486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD  565 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  565 (930)
                      ..|+.+.+..+ +.......+..+.. |+.+.+..+ ++..-...+..+.+|+.+.+..+ +.......|.+|++|+.++
T Consensus       217 ~~l~~i~~~~~-~~~i~~~~f~~~~~-L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~  292 (379)
T 4h09_A          217 KNLKKITITSG-VTTLGDGAFYGMKA-LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV  292 (379)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTCSS-CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred             cccceeeeccc-eeEEccccccCCcc-ceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence            44555555433 22233344555553 777776554 43333445666667777776543 4444455677777777777


Q ss_pred             ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhc
Q 047985          566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCW  633 (930)
Q Consensus       566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l  633 (930)
                      +.++.++.+....|.++.+|+.+.|..+ ++.+-.  .++.++++|+.+.+..+ ++ .|...+|.+.
T Consensus       293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~c  355 (379)
T 4h09_A          293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV--YAFKNCKALSTISYPKS-IT-LIESGAFEGS  355 (379)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCCCCCCTT-CC-EECTTTTTTS
T ss_pred             ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH--HHhhCCCCCCEEEECCc-cC-EEchhHhhCC
Confidence            7777776666667777777777777543 433322  23355666777766544 32 4444555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=1.9e-07  Score=97.14  Aligned_cols=84  Identities=21%  Similarity=0.281  Sum_probs=62.1

Q ss_pred             EEcccccc---cccCchhcccccccceeeccCccccc--cCcccccccCCCCeeeCCCCcCcccCCccccCCC--CCCee
Q 047985          685 VILSSNRF---DGEIPTSISNLKGLQILSLADNSLHG--HIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELT--FLEFF  757 (930)
Q Consensus       685 L~Ls~N~l---~g~ip~~l~~l~~L~~L~Ls~N~l~g--~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~--~L~~L  757 (930)
                      ++++.|+.   .+.++....+++.|+.|+||+|+|++  .+|..++.+++|+.|||++|+|++.  ..+..+.  .|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            56666743   22233333567889999999999988  5667788889999999999999875  3344444  89999


Q ss_pred             ecCCCcccccCCC
Q 047985          758 NVSDNHFTGPIPQ  770 (930)
Q Consensus       758 ~ls~N~L~g~iP~  770 (930)
                      +|++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999988774

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=3.5e-07  Score=90.52  Aligned_cols=39  Identities=26%  Similarity=0.227  Sum_probs=16.5

Q ss_pred             CCCCcEEEccCCCCCCc----hhhhhcCCCCCCEEEc--cCCCCC
Q 047985          221 ITRLIHLDLSFNKLSDE----LPTFIGTLGSLKELDL--LQNNLS  259 (930)
Q Consensus       221 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L--~~n~l~  259 (930)
                      .+.|++|+|++|.|++.    +...+...++|++|+|  ++|.++
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            34444444444444432    2233333444444444  444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.26  E-value=1.8e-07  Score=92.53  Aligned_cols=16  Identities=6%  Similarity=-0.060  Sum_probs=8.0

Q ss_pred             cCCCCCCEEEccCCCC
Q 047985          243 GTLGSLKELDLLQNNL  258 (930)
Q Consensus       243 ~~l~~L~~L~L~~n~l  258 (930)
                      ...++|++|+|++|.+
T Consensus       148 ~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          148 EKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHCSSCCEEECCCSSH
T ss_pred             HhCCCcCEEeccCCCC
Confidence            3344555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.25  E-value=6.1e-07  Score=93.33  Aligned_cols=78  Identities=23%  Similarity=0.285  Sum_probs=66.7

Q ss_pred             cccccEEEcccccccc--cCchhcccccccceeeccCccccccCcccccccC--CCCeeeCCCCcCcccCCc-------c
Q 047985          679 PDILTAVILSSNRFDG--EIPTSISNLKGLQILSLADNSLHGHIPSCLGNLT--DLESLDLSNNRFSGQIPQ-------Q  747 (930)
Q Consensus       679 ~~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~--~L~~LdLs~N~lsg~ip~-------~  747 (930)
                      ++.|+.|+||+|+|++  .+|..++.+++|+.|+|++|+|++.  ..+..++  +|++|+|++|.+++.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            4579999999999998  6678888999999999999999975  4456666  999999999999998873       3


Q ss_pred             ccCCCCCCeee
Q 047985          748 LVELTFLEFFN  758 (930)
Q Consensus       748 l~~L~~L~~L~  758 (930)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            67789998887

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.65  E-value=2.9e-05  Score=74.76  Aligned_cols=34  Identities=3%  Similarity=0.001  Sum_probs=14.3

Q ss_pred             CCCEEEccCCCCCCCCcccccCCCCCcEEEccCC
Q 047985          199 SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN  232 (930)
Q Consensus       199 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  232 (930)
                      .|++||+++|.++..--..+..+++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3444444444443332233344444444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.62  E-value=2e-05  Score=75.88  Aligned_cols=83  Identities=12%  Similarity=0.193  Sum_probs=44.6

Q ss_pred             CCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCC-CCCccCcccccc----cccceeeccccc-ccCCCcccccCCCCC
Q 047985          271 SLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASND-FSGELPASFGNL----RSLRTLDVYECK-FSGQIPSSLSNLTHL  344 (930)
Q Consensus       271 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~L  344 (930)
                      .|+.||++++.++..--..+..+++|++|+|++|. ++..--..+..+    ++|++|+|++|. ++...-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555444333344555556666666553 443322333332    356666666663 554433455667777


Q ss_pred             CEEEccCCC
Q 047985          345 SFLDFSLNN  353 (930)
Q Consensus       345 ~~L~Ls~n~  353 (930)
                      +.|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777777765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.84  E-value=0.0009  Score=65.61  Aligned_cols=15  Identities=27%  Similarity=0.204  Sum_probs=7.0

Q ss_pred             CCCCcEEEccCCCCC
Q 047985          221 ITRLIHLDLSFNKLS  235 (930)
Q Consensus       221 l~~L~~L~Ls~n~l~  235 (930)
                      -+.|++|+|+.|.|.
T Consensus        97 N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           97 SPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECCSSBCC
T ss_pred             CCccCeEecCCCcCC
Confidence            344444444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.64  E-value=0.0007  Score=66.40  Aligned_cols=70  Identities=13%  Similarity=0.147  Sum_probs=35.4

Q ss_pred             ccCCCCCCEEEccCC-CCCcc----CCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCC
Q 047985          115 IINLSSLSYLNLSSA-AFSGQ----IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTIS  187 (930)
Q Consensus       115 l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~  187 (930)
                      +.+-+.|++|+|+++ .+...    +-..+..-+.|+.|+|++|.+.+.-.   ..+...+..-+.|++|+|+.|.|.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga---~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA---RGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH---TTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH---HHHHHHHhcCCccCeEecCCCcCC
Confidence            445567777777774 55432    22334444566666666664322111   233344444445555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.57  E-value=0.0028  Score=57.98  Aligned_cols=56  Identities=23%  Similarity=0.303  Sum_probs=28.7

Q ss_pred             EEEccccccc-ccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCc
Q 047985          684 AVILSSNRFD-GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS  741 (930)
Q Consensus       684 ~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ls  741 (930)
                      .+|.+++.++ ..+|..+.  .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5556666554 34444332  24555555555555444444555555555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.52  E-value=0.0026  Score=58.20  Aligned_cols=57  Identities=19%  Similarity=0.310  Sum_probs=48.1

Q ss_pred             ceeeccCcccc-ccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCccc
Q 047985          707 QILSLADNSLH-GHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT  765 (930)
Q Consensus       707 ~~L~Ls~N~l~-g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~  765 (930)
                      ..++.+++.++ ..+|..+.  ++|+.|||++|+|+..-+..|..++.|++|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47899999997 47776554  47999999999999777777899999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	930
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 94.4 bits (233), Expect = 1e-21
 Identities = 78/355 (21%), Positives = 124/355 (34%), Gaps = 58/355 (16%)

Query: 5   LCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCC--SWDGVQ 62
           LC+  ++ ALLQ K+ L                     +SW P      DCC  +W GV 
Sbjct: 2   LCNPQDKQALLQIKKDLGNP---------------TTLSSWLP----TTDCCNRTWLGVL 42

Query: 63  CNENTG--HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSS 120
           C+ +T    V  LDLS   L       SSL  L +L +L +   +     IPP I  L+ 
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 121 LSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELV 180
           L YL ++    SG IP  + ++  L  LD S+N+                          
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG----------------------- 139

Query: 181 LGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSF-NKLSDELP 239
                    +P +++ L +L  ++  G  + G IP S G+ ++L        N+L+ ++P
Sbjct: 140 --------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 240 TFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWL 299
                L                      +  + +      +         L        L
Sbjct: 192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251

Query: 300 SLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNF 354
              +N   G LP     L+ L +L+V      G+IP    NL       ++ N  
Sbjct: 252 R--NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 92.9 bits (229), Expect = 5e-21
 Identities = 68/292 (23%), Positives = 103/292 (35%), Gaps = 5/292 (1%)

Query: 507 GNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGR--IPRSLANCSNLEFL 564
              S WL   D  +  + G + D   +   +  +DLS   L     IP SLAN   L FL
Sbjct: 22  TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81

Query: 565 DLGDN-QIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTG 623
            +G    +    P  +  L  L+ L +           P        L  +D S N  +G
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS--GAIPDFLSQIKTLVTLDFSYNALSG 139

Query: 624 KLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILT 683
            LP       N + +              +   + ++       N+          ++  
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199

Query: 684 AVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQ 743
           A +  S        + +              +        +G   +L  LDL NNR  G 
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259

Query: 744 IPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSS 795
           +PQ L +L FL   NVS N+  G IPQG     FD +++  N  LCG PL +
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.7 bits (187), Expect = 1e-15
 Identities = 73/314 (23%), Positives = 118/314 (37%), Gaps = 50/314 (15%)

Query: 216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQV 275
            +     R+ +LDLS   L    P                      +P+S+ NL  L  +
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYP----------------------IPSSLANLPYLNFL 81

Query: 276 DLSLNRFL-GKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI 334
            +     L G +P ++  LTQLH+L +   + SG +P     +++L TLD      SG +
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 335 PSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHR 394
           P S+S+L +L  + F  N  SG +  D +    KL   + +S NRL+     T    +  
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA 200

Query: 395 FRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFL 454
           F  +S    +      F  +++                         +     N     L
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNT-----------------------QKIHLAKNSLAFDL 237

Query: 455 TGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLS 514
                  N     + NN + G +P  +  L   L SL++S+NNL G +PQ  GN      
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFNNLCGEIPQ-GGNLQR-FD 294

Query: 515 ILDLQHNKFSGTIP 528
           +    +NK     P
Sbjct: 295 VSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.0 bits (180), Expect = 8e-15
 Identities = 44/258 (17%), Positives = 86/258 (33%), Gaps = 4/258 (1%)

Query: 315 GNLRSLRTLDVYECKFSG--QIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYH 372
                +  LD+          IPSSL+NL +L+FL       +    +   +     L++
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG-GINNLVGPIPPAIAKLTQLHY 105

Query: 373 LFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKV 432
           L+++   +S       +            +     +P  + +  +L  +    N+I+G +
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 433 PKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLD 492
           P      S          +            +N    + S             +   +  
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 493 LSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIP 552
           +     S          S  L+ LDL++N+  GT+P  L +   L  +++S N L G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 553 RSLANCSNLEFLDLGDNQ 570
               N    +     +N+
Sbjct: 286 -QGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 1e-11
 Identities = 46/287 (16%), Positives = 82/287 (28%), Gaps = 11/287 (3%)

Query: 324 DVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTN-RLSL 382
           D     + G +  + +    ++ LD S  N      +   L N   L  L++     L  
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 383 LTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQ 442
                    +         +     IP FL     L  LD + N ++G +P  +      
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 443 NFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLL 502
                + +       D + +      S       +   I      L    +  +      
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 503 PQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLE 562
              +   SD  +                +     L  +DL +N + G +P+ L     L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 563 FLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFP 609
            L++  N +    P   G L   +V    +NK           CG P
Sbjct: 272 SLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCL---------CGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.6 bits (153), Expect = 3e-11
 Identities = 64/271 (23%), Positives = 108/271 (39%), Gaps = 12/271 (4%)

Query: 192 HNLTYLSSLTTLSLSGCDLRGR--IPSSLGNITRLIHLDLSFN-KLSDELPTFIGTLGSL 248
              T    +  L LSG +L     IPSSL N+  L  L +     L   +P  I  L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSG 308
             L +   N+SG +P+ +  + +L  +D S N   G +P S+ +L  L  ++   N  SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 309 ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHK 368
            +P S+G+   L T                    +L+F+D S N   G   +      + 
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 369 LLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLT-EIPKFLKNQHHLELLDLASNK 427
              HL  ++    L     S   +       L +  +   +P+ L     L  L+++ N 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGL----DLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 428 INGKVPKWLLDPSMQNFGHLNLSHN-FLTGF 457
           + G++P+     ++Q F     ++N  L G 
Sbjct: 280 LCGEIPQG---GNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 1e-07
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 192 HNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL 251
             +    +L  L L    + G +P  L  +  L  L++SFN L  E+P   G L      
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296

Query: 252 DLLQNNLSGELP 263
               N      P
Sbjct: 297 AYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.6 bits (213), Expect = 1e-18
 Identities = 69/399 (17%), Positives = 124/399 (31%), Gaps = 34/399 (8%)

Query: 171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLS 230
             L    + VLG   ++  +    T L  +TTL      ++      +  +  L  ++ S
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 231 FNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSL 290
            N+L+D  P     L +L +L  +  N +     +     +        N          
Sbjct: 75  NNQLTDITP-----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ-------- 121

Query: 291 GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFS 350
                     L +      L  S   +  +  L            + +++L  L+ L   
Sbjct: 122 ----ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 177

Query: 351 LNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK 410
                    +    V  KL     L       ++  T          +SL    L +I  
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQLKDIG- 235

Query: 411 FLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSN 470
            L +  +L  LDLA+N+I+   P       +     L L  N ++               
Sbjct: 236 TLASLTNLTDLDLANNQISNLAPLS----GLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 471 NSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDN 530
            +          +    L  L L +NN+S + P  + + +  L  L   +NK S     +
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK-LQRLFFANNKVSD--VSS 346

Query: 531 LLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDN 569
           L     +  +    N +    P  LAN + +  L L D 
Sbjct: 347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.4 bits (210), Expect = 3e-18
 Identities = 63/379 (16%), Positives = 120/379 (31%), Gaps = 54/379 (14%)

Query: 396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPK------WLLDPSMQNFGHLNL 449
             +      +  I   ++  ++L  ++ ++N++    P         +  +      +  
Sbjct: 47  TTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 105

Query: 450 SHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNF 509
             N                 +        + +   SN +  +       S          
Sbjct: 106 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV 165

Query: 510 SDWLSILDLQHNKFSGTIP------DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEF 563
           +D   + +L   +              L K   L+ +  ++N +    P      +NL+ 
Sbjct: 166 TDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDE 223

Query: 564 LDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTG 623
           L L  NQ++DI    L +L +L  L L +N+   L        G  KL  + L  N+ + 
Sbjct: 224 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQISN 277

Query: 624 KLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILT 683
             P         ++                              N+ + +S       LT
Sbjct: 278 ISPLAGLTALTNLE---------------------------LNENQLEDISPISNLKNLT 310

Query: 684 AVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQ 743
            + L  N      P  +S+L  LQ L  A+N +     S L NLT++  L   +N+ S  
Sbjct: 311 YLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDL 366

Query: 744 IPQQLVELTFLEFFNVSDN 762
            P  L  LT +    ++D 
Sbjct: 367 TP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.5 bits (205), Expect = 2e-17
 Identities = 66/382 (17%), Positives = 126/382 (32%), Gaps = 52/382 (13%)

Query: 245 LGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASN 304
           L    +  L + N++  +  +  +L  +  +         K    +  L  L  ++ ++N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNN 76

Query: 305 DFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFL 364
             +   P    NL  L  + +   + +   P +         L  +       +     L
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 365 VNHK----LLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL-------TEIPKFLK 413
              +     +  +   +   SL   +  N  +      +L + +              L 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 414 NQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTG---FDQHPNTVNYLVSN 470
              +LE L   +N+I+   P  +    + N   L+L+ N L          N  +  ++N
Sbjct: 195 KLTNLESLIATNNQISDITPLGI----LTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 250

Query: 471 NSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP-------------------QCLGNFSD 511
           N ++   P        +L  L L  N +S + P                       +   
Sbjct: 251 NQISNLAPLSGL---TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307

Query: 512 WLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQI 571
            L+ L L  N  S   P + L    L+ +  ++N +      SLAN +N+ +L  G NQI
Sbjct: 308 NLTYLTLYFNNISDISPVSSLTK--LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 572 RDIFPSWLGTLPDLNVLILKSN 593
            D+ P  L  L  +  L L   
Sbjct: 364 SDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.3 bits (181), Expect = 2e-14
 Identities = 66/233 (28%), Positives = 101/233 (43%), Gaps = 23/233 (9%)

Query: 93  LVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSH 152
           L +L  L+      +       +  L++L  L  ++   S   P  IL  + L  L L+ 
Sbjct: 171 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNG 228

Query: 153 NSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG 212
           N   D   L           LTNL +L L +  IS+  P  L+ L+ LT L L    +  
Sbjct: 229 NQLKDIGTLAS---------LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 277

Query: 213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL 272
             P  L  +T L +L+L+ N+   E  + I  L +L  L L  NN+S   P  + +L  L
Sbjct: 278 ISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 331

Query: 273 EQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV 325
           +++  + N+      SSL NLT ++WLS   N  S   P    NL  +  L +
Sbjct: 332 QRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.5 bits (166), Expect = 1e-12
 Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 24/192 (12%)

Query: 78  SCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPS 137
                 I+  + L  L +L+ L L  N          + +L++L+ L+L++   S   P 
Sbjct: 203 IATNNQISDITPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP- 258

Query: 138 EILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTN-------------LKELVLGDV 184
            +  L+KL  L L  N   +   L   +     +   N             L  L L   
Sbjct: 259 -LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 185 TISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGT 244
            IS   P  ++ L+ L  L  +   +     SSL N+T +  L    N++SD  P  +  
Sbjct: 318 NISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 371

Query: 245 LGSLKELDLLQN 256
           L  + +L L   
Sbjct: 372 LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.2 bits (160), Expect = 6e-12
 Identities = 75/394 (19%), Positives = 153/394 (38%), Gaps = 35/394 (8%)

Query: 65  ENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYL 124
                 +K  L  + +  ++ S + L ++  L+   L     DG      +  L++L+ +
Sbjct: 19  TALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQI 71

Query: 125 NLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDV 184
           N S+   +   P  +  L+KL  + +++N   D   L   +         N    +    
Sbjct: 72  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 185 TISSPIPH-----NLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLS-DEL 238
            +++          ++ +S+L+ L+       G   + L  +  L  L+      +    
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 239 PTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHW 298
            + +  L +L+ L    N +S   P  I    +L+++ L+ N+       +L +LT L  
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTD 245

Query: 299 LSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKM 358
           L LA+N  S   P     L  L  L +   + S   P  L+ LT L+ L+ + N      
Sbjct: 246 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 301

Query: 359 DLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHL 418
                + N K L +L L  N +S ++  +S T   + + +   +  ++++   L N  ++
Sbjct: 302 ----PISNLKNLTYLTLYFNNISDISPVSSLT---KLQRLFFANNKVSDVS-SLANLTNI 353

Query: 419 ELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHN 452
             L    N+I+   P      ++     L L+  
Sbjct: 354 NWLSAGHNQISDLTPLA----NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 2e-06
 Identities = 47/333 (14%), Positives = 103/333 (30%), Gaps = 38/333 (11%)

Query: 462 NTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHN 521
             +  ++   ++T  +     +L   + +L      +  +    +   ++ L+ ++  +N
Sbjct: 23  EKMKTVLGKTNVTDTVS--QTDLDQ-VTTLQADRLGIKSI--DGVEYLNN-LTQINFSNN 76

Query: 522 KFSGTIP-DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLG 580
           + +   P  NL K   + + +     +      +      L    + D        +   
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 581 TLPDLNVL--ILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKV 638
                N +  I   +    L +    +       + +L+         +         K+
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 639 VNASELRYMQ----EVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDG 694
            N   L        ++ P      + + SL   N+ + +        LT + L++N+   
Sbjct: 197 TNLESLIATNNQISDITPLGILTNLDELSL-NGNQLKDIGTLASLTNLTDLDLANNQISN 255

Query: 695 EIPTSISNLKGLQILSLADNSLHGHIP--------------------SCLGNLTDLESLD 734
             P  +S L  L  L L  N +    P                    S + NL +L  L 
Sbjct: 256 LAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 735 LSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGP 767
           L  N  S   P  +  LT L+    ++N  +  
Sbjct: 314 LYFNNISDISP--VSSLTKLQRLFFANNKVSDV 344

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.2 bits (199), Expect = 3e-17
 Identities = 51/288 (17%), Positives = 98/288 (34%), Gaps = 13/288 (4%)

Query: 190 IPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK 249
           +P +L        L L    +         N+  L  L L  NK+S   P     L  L+
Sbjct: 25  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE 309
            L L +N L          L  L   +  + +    V + L  +  +  L       SG 
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGI 141

Query: 310 LPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKL 369
              +F  ++ L  + + +   +        +LT    L    N  +        L     
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITK--VDAASLKGLNN 196

Query: 370 LYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKIN 429
           L  L LS N +S +   +   T H        +  L ++P  L +  +++++ L +N I+
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHL-NNNKLVKVPGGLADHKYIQVVYLHNNNIS 255

Query: 430 GKVPKWLLDPS----MQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSL 473
                    P       ++  ++L  N +  ++  P+T   +    ++
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.8 bits (177), Expect = 2e-14
 Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 42/309 (13%)

Query: 56  CSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEI 115
           C    VQC++     +  DL                       LDL  N         + 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPD-----------------TALLDLQNNKITEI-KDGDF 51

Query: 116 INLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL-T 174
            NL +L  L L +   S   P     L KL  L LS N            L  L +K+  
Sbjct: 52  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-----------QLKELPEKMPK 100

Query: 175 NLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR--GRIPSSLGNITRLIHLDLSFN 232
            L+EL + +  I+         L+ +  + L    L+  G    +   + +L ++ ++  
Sbjct: 101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 160

Query: 233 KLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN 292
            ++       G   SL EL L  N ++     S+  L +L ++ LS N        SL N
Sbjct: 161 NITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 293 LTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG------QIPSSLSNLTHLSF 346
              L  L   +N+   ++P    + + ++ + ++    S         P   +     S 
Sbjct: 218 TPHLRELH-LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 276

Query: 347 LDFSLNNFS 355
           +    N   
Sbjct: 277 VSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 3e-14
 Identities = 65/352 (18%), Positives = 116/352 (32%), Gaps = 63/352 (17%)

Query: 271 SLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF 330
            L  V  S +  L KVP  L        L L +N  +      F NL++L TL +   K 
Sbjct: 11  HLRVVQCS-DLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 331 SGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNT 390
           S   P + + L  L  L  S N        ++     K L  L +  N ++ + K+    
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLK-----ELPEKMPKTLQELRVHENEITKVRKSV--- 119

Query: 391 TSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLS 450
                                    + + +++L +N +     +      M+   ++ ++
Sbjct: 120 ---------------------FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 158

Query: 451 HNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFS 510
              +T   Q                        L   L  L L  N ++ +    L    
Sbjct: 159 DTNITTIPQ-----------------------GLPPSLTELHLDGNKITKVDAASLKGL- 194

Query: 511 DWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQ 570
           + L+ L L  N  S     +L     L+ + L++N L  ++P  LA+   ++ + L +N 
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 253

Query: 571 IRDI------FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDL 616
           I  I       P +       + + L SN       +P T         + L
Sbjct: 254 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 3e-12
 Identities = 47/302 (15%), Positives = 90/302 (29%), Gaps = 36/302 (11%)

Query: 226 HLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGK 285
            +  S   L  ++P  +        LDL  N ++        NL +L  + L  N+    
Sbjct: 14  VVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 286 VPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLS 345
            P +   L +L  L L+ N    ELP         + L V+E + +    S  + L  + 
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMI 127

Query: 346 FLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL 405
            ++   N        +      K L ++ ++   ++ + +                    
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---------------- 171

Query: 406 TEIPKFLKNQHHLELLDLASNKINGKVPKWL--LDPSMQNFGHLNLSHNFLTGFDQHPNT 463
                       L  L L  NKI       L  L+   +     N       G   +   
Sbjct: 172 -----------SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220

Query: 464 VNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKF 523
           +  L  NN+   ++P  + +    ++ + L  NN+S +                      
Sbjct: 221 LRELHLNNNKLVKVPGGLADHKY-IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279

Query: 524 SG 525
             
Sbjct: 280 FS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 9e-12
 Identities = 40/261 (15%), Positives = 81/261 (31%), Gaps = 30/261 (11%)

Query: 508 NFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLG 567
           +     ++LDLQ+NK +     +      L  + L +N +    P + A    LE L L 
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 568 DNQIRDIFPSW---------------------LGTLPDLNVLILKSNKFHGLIREPKTDC 606
            NQ++++                            L  + V+ L +N       E     
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 607 GFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTM 666
           G  KL  I ++    T  +P         + +      +     +           S   
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 667 SNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHG------HI 720
            +     S    P +    +  +N    ++P  +++ K +Q++ L +N++          
Sbjct: 207 ISAVDNGSLANTPHLRELHL--NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 721 PSCLGNLTDLESLDLSNNRFS 741
           P           + L +N   
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 1e-11
 Identities = 54/256 (21%), Positives = 90/256 (35%), Gaps = 32/256 (12%)

Query: 537 LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
           L+V+  SD  L+ ++P+ L    +   LDL +N+I +I       L +L+ LIL +NK  
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 597 GLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEG 656
            +   P       KL  + LSKN+    LP    +    ++V               NE 
Sbjct: 69  KIS--PGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHE-------------NEI 112

Query: 657 NGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSL 716
             +        N+  ++     P           +  G    +   +K L  + +AD ++
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNP----------LKSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 717 HGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFAT 776
              IP   G    L  L L  N+ +      L  L  L    +S N  +           
Sbjct: 163 T-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

Query: 777 FDKTSFDGNSGLCGRP 792
             +     N+ L   P
Sbjct: 220 HLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 9e-11
 Identities = 44/269 (16%), Positives = 80/269 (29%), Gaps = 36/269 (13%)

Query: 526 TIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDL 585
            +P +L       ++DL +N +         N  NL  L L +N+I  I P     L  L
Sbjct: 24  KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 586 NVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR 645
             L L  N+   L  +          + + + +N  T    S+       + V   +   
Sbjct: 82  ERLYLSKNQLKELPEKMPKTL-----QELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKG 705
               +             + +++       + +P  LT + L  N+       S+  L  
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 196

Query: 706 LQILSLADNSLHGHI-----------------------PSCLGNLTDLESLDLSNNRFSG 742
           L  L L+ NS+                           P  L +   ++ + L NN  S 
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256

Query: 743 ------QIPQQLVELTFLEFFNVSDNHFT 765
                   P    +       ++  N   
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 3/113 (2%)

Query: 682 LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS 741
           L  V  S    + ++P  +       +L L +N +         NL +L +L L NN+ S
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 742 GQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLS 794
              P     L  LE   +S N       +  +     +   +  + +     +
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 121

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (168), Expect = 2e-13
 Identities = 38/298 (12%), Positives = 83/298 (27%), Gaps = 33/298 (11%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
               L   +P     +    + + L  N +S +         +   +    +        
Sbjct: 19  PQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 529 DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVL 588
                  + ++    +  L+   P +      L  L L    ++++ P     L  L  L
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 589 ILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQ 648
            L+ N    L     T      L  + L  NR +           +             +
Sbjct: 135 YLQDNALQALP--DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-----------LDR 181

Query: 649 EVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQI 708
            ++  N    ++ ++     +   +               +N        +++ L+ LQ 
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYL------------FANNLSALPTEALAPLRALQY 229

Query: 709 LSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTG 766
           L L DN       +       L+    S++     +PQ+L          ++ N   G
Sbjct: 230 LRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 50/272 (18%), Positives = 77/272 (28%), Gaps = 36/272 (13%)

Query: 109 SEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168
             +P  I   ++   + L     S    +       L  L L  N            L  
Sbjct: 24  QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLD 228
           L     +          + S  P     L  L TL L  C L+   P     +  L +L 
Sbjct: 82  LEQLDLSDNAQ------LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 229 LSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPS 288
           L  N L          LG+L  L L  N +S     +   L SL+++ L  NR     P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 289 SLGNLT------------------------QLHWLSLASNDFSGELPASFGNLRSLRTLD 324
           +  +L                          L +L L  N +  +  A       L+   
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFR 254

Query: 325 VYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG 356
               +    +P  L+          + N+  G
Sbjct: 255 GSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 3e-11
 Identities = 56/278 (20%), Positives = 94/278 (33%), Gaps = 28/278 (10%)

Query: 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
              + + L    IS     +     +LT L L    L     ++   +  L  LDLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 234 LSDEL-PTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN 292
               + P     LG L  L L +  L    P     LA+L+ + L  N        +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 293 LTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352
           L  L  L L  N  S     +F  L SL  L +++ + +   P +  +L  L  L    N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 353 NFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412
           N S      +     + L +L L+ N                      C C    +  +L
Sbjct: 212 NLSALPTEALA--PLRALQYLRLNDNPWV-------------------CDCRARPLWAWL 250

Query: 413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLS 450
           +          +S+++   +P+ L    ++     +L 
Sbjct: 251 QK------FRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 6e-11
 Identities = 42/299 (14%), Positives = 78/299 (26%), Gaps = 32/299 (10%)

Query: 446 HLNLSHNFLTGFDQH--PNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP 503
             +     L          +    +  N ++    +      N L  L L  N L+ +  
Sbjct: 15  TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRN-LTILWLHSNVLARIDA 73

Query: 504 QCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEF 563
                 +    +    + +     P        L  + L    LQ   P      + L++
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 564 LDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTG 623
           L L DN ++ +       L +L  L L  N+   +        G   L  + L +NR   
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLLHQNRVAH 191

Query: 624 KLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILT 683
             P         M                         Y    +              L 
Sbjct: 192 VHPHAFRDLGRLM-----------------------TLYLFANNLSALPTEALAPLRALQ 228

Query: 684 AVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSG 742
            + L+ N +  +   +      LQ    + + +   +P     L   +   L+ N   G
Sbjct: 229 YLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 42/270 (15%), Positives = 77/270 (28%), Gaps = 16/270 (5%)

Query: 333 QIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTS 392
            +P  +        +    N  S  +    F     L      S     +   A +    
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 393 HRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHN 452
                +S  +   +  P        L  L L    +    P       +    +L L  N
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL--FRGLAALQYLYLQDN 139

Query: 453 FLTG-----FDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLG 507
            L       F    N  +  +  N ++         L + L+ L L  N ++ + P    
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRVAHVHPHAFR 198

Query: 508 NFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLG 567
           +       L L  N  S    + L     L+ + L+DN       R+    + L+     
Sbjct: 199 DLGRL-MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGS 256

Query: 568 DNQIRDIFPSWLGTLPDLNVLILKSNKFHG 597
            +++    P  L      ++  L +N   G
Sbjct: 257 SSEVPCSLPQRLA---GRDLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 40/238 (16%), Positives = 70/238 (29%), Gaps = 32/238 (13%)

Query: 503 PQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLE 562
           P C  +       ++      +  +P +L K     ++ LS+NLL      +L   + L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 563 FLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622
            L+L   ++  +                                  P L  +DLS N+  
Sbjct: 59  QLNLDRAELTKLQVDG----------------------------TLPVLGTLDLSHNQLQ 90

Query: 623 GKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDIL 682
                        +  V+ + L  +        G     Y      K            L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 683 TAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRF 740
             + L++N         ++ L+ L  L L +NSL+  IP        L    L  N +
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 39/199 (19%), Positives = 61/199 (30%), Gaps = 5/199 (2%)

Query: 398 VSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGF 457
           V+    +LT +P  L       +L L+ N +       L+         LNL    LT  
Sbjct: 15  VNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKL 70

Query: 458 DQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILD 517
                       + S        +   +    ++     N    LP         L  L 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 518 LQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPS 577
           L+ N+     P  L     L+ + L++N L       L    NL+ L L +N +  I P 
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PK 189

Query: 578 WLGTLPDLNVLILKSNKFH 596
                  L    L  N + 
Sbjct: 190 GFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 37/228 (16%), Positives = 70/228 (30%), Gaps = 32/228 (14%)

Query: 537 LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
              ++     L   +P  L    +   L L +N +     + L     L  L L   +  
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 597 GLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEG 656
                                K +  G LP +     +  ++ +   L      +   + 
Sbjct: 69  ---------------------KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107

Query: 657 NGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSL 716
           +     SL +     +   +++           N      P  ++    L+ LSLA+N+L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLK-------GNELKTLPPGLLTPTPKLEKLSLANNNL 160

Query: 717 HGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHF 764
                  L  L +L++L L  N     IP+       L F  +  N +
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 35/211 (16%), Positives = 60/211 (28%), Gaps = 11/211 (5%)

Query: 242 IGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSL 301
           +  + S  E++  + NL+  LP  +        + LS N       ++L   T+L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 302 ASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLD 361
                            +L  L   +   +      L   T  +     ++         
Sbjct: 63  -----DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 362 IFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELL 421
             L     L  L+L  N L  L       T    +     +         L    +L+ L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 422 DLASNKINGKVPKWLLDPSMQNFGHLNLSHN 452
            L  N +   +PK              L  N
Sbjct: 178 LLQENSLY-TIPKGFFG--SHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 13/198 (6%)

Query: 109 SEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168
           + +PP++      + L+LS         + ++  ++L  L+L                  
Sbjct: 23  TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL---------Q 71

Query: 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLD 228
           +   L  L  L L    + S        L +LT L +S   L      +L  +  L  L 
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 229 LSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPS 288
           L  N+L    P  +     L++L L  NNL+      +  L +L+ + L  N     +P 
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189

Query: 289 SLGNLTQLHWLSLASNDF 306
                  L +  L  N +
Sbjct: 190 GFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 52/244 (21%), Positives = 83/244 (34%), Gaps = 28/244 (11%)

Query: 171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLS 230
            K+ +  E+      +++ +P +L      T L LS   L     ++L   TRL  L+L 
Sbjct: 7   SKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 231 FNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSL 290
             +         GTL  L  LDL  N L            +L  +D+S NR       +L
Sbjct: 64  RAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSLPLGAL 120

Query: 291 GNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFS 350
             L +L  L L  N+     P        L  L +     +      L+ L +L  L   
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 351 LNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK 410
            N+      +        LL   FL  N                     LC+C++    +
Sbjct: 181 ENSL---YTIPKGFFGSHLLPFAFLHGNPW-------------------LCNCEILYFRR 218

Query: 411 FLKN 414
           +L++
Sbjct: 219 WLQD 222

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 38/198 (19%), Positives = 61/198 (30%), Gaps = 53/198 (26%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
              +LT  +P    +L      L LS N L       L  ++  L+ L+L   + +    
Sbjct: 18  DKRNLT-ALPP---DLPKDTTILHLSENLLYTFSLATLMPYTR-LTQLNLDRAELTKLQV 72

Query: 529 DNLLK---------------------------------------------GNILKVIDLS 543
           D  L                                                 L+ + L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPK 603
            N L+   P  L     LE L L +N + ++    L  L +L+ L+L+ N  + +   PK
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI---PK 189

Query: 604 TDCGFPKLRIIDLSKNRF 621
              G   L    L  N +
Sbjct: 190 GFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 699 SISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFN 758
            +S +     ++    +L   +P  L    D   L LS N         L+  T L   N
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 759 VSDNHF 764
           +     
Sbjct: 62  LDRAEL 67

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 58.3 bits (139), Expect = 2e-09
 Identities = 57/342 (16%), Positives = 103/342 (30%), Gaps = 30/342 (8%)

Query: 247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDF 306
              EL+L    LS  LP    +L SL     S N  L ++P    +L  L   +      
Sbjct: 39  QAHELELNNLGLS-SLPELPPHLESL---VASCNS-LTELPELPQSLKSLLVDNNNLKAL 93

Query: 307 SGELPASFGNLRSLRTLD-VYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLV 365
           S   P       S   L+ + E + S  +     +   L  L     +       +  L 
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 366 NHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLAS 425
               L +L   T   +                  +   ++ E    L+N   L  +   +
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 426 NKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLS 485
           N +           ++    +       L       +    + S  S       ++   S
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDN 545
           N                 + L +    L  L++ +NK    +P    +   L+ +  S N
Sbjct: 274 NE---------------IRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFN 314

Query: 546 LLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNV 587
            L   +P       NL+ L +  N +R+  P    ++ DL +
Sbjct: 315 HLA-EVPELP---QNLKQLHVEYNPLREF-PDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.2 bits (131), Expect = 2e-08
 Identities = 60/332 (18%), Positives = 100/332 (30%), Gaps = 28/332 (8%)

Query: 198 SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN 257
                L L+   L   +P    ++     L  S N L+ ELP       SLK L +  NN
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELP---QSLKSLLVDNNN 89

Query: 258 LSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
           L      ++ +L  L    L            L  L    +L +   D +          
Sbjct: 90  L-----KALSDLPPL----LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP 140

Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLST 377
                              +L  LT +   + SL            +V    +       
Sbjct: 141 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPEL 200

Query: 378 NRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLL 437
             L  LT   ++    +       S +   +              L    ++  +   L 
Sbjct: 201 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 260

Query: 438 DPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNN 497
           +     +     S+   +  D  P+     VSNN L  E+P+        LE L  S+N+
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNH 315

Query: 498 LSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD 529
           L+  +P+   N    L  L +++N      PD
Sbjct: 316 LAE-VPELPQN----LKQLHVEYNPLR-EFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 6e-07
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 186 ISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTL 245
            S+ I        SL  L++S   L   +P+       L  L  SFN L+ E+P      
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPEL---P 323

Query: 246 GSLKELDLLQNNLSGELPNSIGNLASL 272
            +LK+L +  N L  E P+   ++  L
Sbjct: 324 QNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 9e-07
 Identities = 56/326 (17%), Positives = 104/326 (31%), Gaps = 21/326 (6%)

Query: 443 NFGHLNLSHNFLTGFDQHPNTVNYL-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGL 501
               L L++  L+   + P  +  L  S NSLT E+P    +L + L   + +   LS L
Sbjct: 39  QAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVD-NNNLKALSDL 96

Query: 502 LPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNL 561
            P           +  L   + S  +    +  N LK +      L+     +       
Sbjct: 97  PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 562 EFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRF 621
           E  +L          + L  LPDL + +      + ++ E       P L  I    N  
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216

Query: 622 TGKLPSMA---------FQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQM 672
                                +  ++  +     + E I         +     ++  ++
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 673 MSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLES 732
            S   +P  L  + +S+N+   E+P     L   + L  + N L   +P    NL   + 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVPELPQNL---KQ 328

Query: 733 LDLSNNRFSGQIPQQLVELTFLEFFN 758
           L +  N    + P     +  L   +
Sbjct: 329 LHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 225 IHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLG 284
                  N  S+E+ +      SL+EL++  N L  ELP     L  L     S N  L 
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNH-LA 317

Query: 285 KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLR 321
           +VP    NL QLH   +  N    E P    ++  LR
Sbjct: 318 EVPELPQNLKQLH---VEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 51/317 (16%), Positives = 95/317 (29%), Gaps = 48/317 (15%)

Query: 484 LSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNL-------LKGNI 536
           L  +   L+L+   LS  LP+   +    L  L    N  +  +P+         +  N 
Sbjct: 36  LDRQAHELELNNLGLSS-LPELPPH----LESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 537 LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
           LK +     LL+     +       E  +    +I D+  + L  LPDL   +      +
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 597 GLIREPKTDCGFPKLRIIDLSKNRFTGKLP---------------------------SMA 629
             + E       P L  I    N                                  +  
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 630 FQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSS 689
           +   N +K +           +  N    + +   +++      +       L   +   
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 690 NRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLV 749
           N    EI +       L+ L++++N L   +P+       LE L  S N  + ++P+   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ 324

Query: 750 ELTFLEFFNVSDNHFTG 766
            L  L   +V  N    
Sbjct: 325 NLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 205 LSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPN 264
                    I S       L  L++S NKL  ELP        L+ L    N+L+ E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLA-EVPE 321

Query: 265 SIGNLASLEQVDLSLNRF--LGKVPSSLGNL 293
              NL  L    +  N       +P S+ +L
Sbjct: 322 LPQNLKQL---HVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 7e-05
 Identities = 42/330 (12%), Positives = 82/330 (24%), Gaps = 29/330 (8%)

Query: 294 TQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNN 353
            Q H L L +   S  LP    +L SL          + ++P    +L  L   + +L  
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 354 FSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLK 413
            S    L  +L                S L     +  S +       S +         
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 414 NQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSL 473
            +            I          P +       ++ N +         + +L +  + 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 474 TGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLK 533
              + +      +                   + +          Q   F     +    
Sbjct: 213 NNLLKTLPDLPPSLE--------------ALNVRDNYLTDLPELPQSLTFLDVSENIFSG 258

Query: 534 GNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSN 593
            + L       N     I        +LE L++ +N++ ++        P L  LI   N
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFN 314

Query: 594 KFHGLIREPKTDCGFPKLRIIDLSKNRFTG 623
               +   P        L+ + +  N    
Sbjct: 315 HLAEVPELP------QNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT 455
             +++ +  L E+P        LE L  + N +        +    QN   L++ +N L 
Sbjct: 287 EELNVSNNKLIELPALPPR---LERLIASFNHLAE------VPELPQNLKQLHVEYNPLR 337

Query: 456 GFDQHPNTVNYLVSNN 471
            F   P +V  L  N+
Sbjct: 338 EFPDIPESVEDLRMNS 353

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (139), Expect = 2e-09
 Identities = 46/471 (9%), Positives = 98/471 (20%), Gaps = 40/471 (8%)

Query: 296 LHWLSLASNDFSGE-LPASFGNLRSLRTLDVYECKFSGQ----IPSSLSNLTHLSFLDFS 350
           +  L +   + S          L+  + + + +C  +      I S+L     L+ L+  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 351 LNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL-LTKATSNTTSHRFRAVSLCSCDLTEIP 409
            N         +     + L        +LSL     T          +           
Sbjct: 64  SNELGDVGVHCVL----QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 410 KFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVS 469
                      L            + L                 +         +    +
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 470 NNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD 529
           + +  G          +  +   L   +       C        S   L+          
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLI 589
           +                  G              L         I     G L  +    
Sbjct: 240 D-----------------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 282

Query: 590 LKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQE 649
               +      E   +        +     +                   ++   +    
Sbjct: 283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 342

Query: 650 VIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGE----IPTSISNLKG 705
           +      N + D  +    +G           L  + L+           +  ++     
Sbjct: 343 LELQISNNRLEDAGVRELCQGLGQPGSV----LRVLWLADCDVSDSSCSSLAATLLANHS 398

Query: 706 LQILSLADNSLHGHIPSCLG-----NLTDLESLDLSNNRFSGQIPQQLVEL 751
           L+ L L++N L       L          LE L L +  +S ++  +L  L
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (128), Expect = 4e-08
 Identities = 61/462 (13%), Positives = 113/462 (24%), Gaps = 27/462 (5%)

Query: 175 NLKELVLGDVTIS-SPIPHNLTYLSSLTTLSLSGCDLRGR----IPSSLGNITRLIHLDL 229
           +++ L +    +S +     L  L     + L  C L       I S+L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 230 SFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNL------ASLEQVDLSLNRFL 283
             N+L D     +          + + +L        G         +L  +        
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 284 GKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTH 343
               + L  L +         +       S           V   K   +  +  +N  +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 344 LSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSC 403
            + +                L             +   ++    S               
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 404 DLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNT 463
                P  L     L  L +    I  K    L            LS       D+    
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 464 VNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKF 523
           +   +       E                 S           L   ++ L    ++    
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 524 SGTIPDNLLKGNILKVIDLSDNLLQGR----IPRSLANCSNLEFLDLGDNQIRDIFPSWL 579
               P ++     L+V+ L+D  +       +  +L    +L  LDL +N + D     L
Sbjct: 363 GLGQPGSV-----LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 580 GT-----LPDLNVLILKSNKFHGLIREPKTDC--GFPKLRII 614
                     L  L+L    +   + +         P LR+I
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 1e-07
 Identities = 58/441 (13%), Positives = 109/441 (24%), Gaps = 40/441 (9%)

Query: 370 LYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTE-----IPKFLKNQHHLELLDLA 424
           +  L +    LS    A       + + V L  C LTE     I   L+    L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 425 SNKINGKVPKWL---LDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWI 481
           SN++       +   L         L+L +  LTG      +             +   +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 482 CNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVID 541
              +      +   +    L    L   S   +  +   +          L  +   + +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 542 LSDNLLQGRIPRSLANCSNLEFLDLGDNQI-----------------------RDIFPSW 578
               +L   +  S      L+    G                           +      
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 579 LGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKV 638
               P L     +                    R++   ++     L         A  +
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 639 VNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPT 698
                    Q    + +         +  +     +   +   ++   L           
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 699 SISNLKGLQILSLADNSLHG----HIPSCLGNLTDLESLDLSNNRFSGQIPQQLVE---- 750
                  L++L LAD  +       + + L     L  LDLSNN        QLVE    
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 751 -LTFLEFFNVSDNHFTGPIPQ 770
               LE   + D +++  +  
Sbjct: 424 PGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 8e-06
 Identities = 62/478 (12%), Positives = 114/478 (23%), Gaps = 38/478 (7%)

Query: 120 SLSYLNLSSAAFSGQIPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKE 178
            +  L++     S    +E+L  L +   + L      +        + +       L E
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR---CKDISSALRVNPALAE 59

Query: 179 LVLGDVTISSPIPHNL-----TYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK 233
           L L    +     H +     T    +  LSL  C L G     L +  R +      + 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 234 LSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL 293
             + L      L        L      E         S    +   +    K       +
Sbjct: 120 SDNLLGDAGLQLLCEGL---LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 294 TQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNN 353
           +               L  S   L +L+         + +    +             +N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 354 FSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLK 413
             G + +               +         A       R         +L+     L 
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 414 NQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSL 473
           ++    L +            W+   S       + S             ++     ++ 
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 356

Query: 474 TGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLK 533
             E+   +    + L  L L+  ++S      L                        LL 
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT---------------------LLA 395

Query: 534 GNILKVIDLSDNLLQGRIPRSLA-----NCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586
            + L+ +DLS+N L       L          LE L L D    +     L  L    
Sbjct: 396 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 4e-05
 Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 9/103 (8%)

Query: 485 SNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSG----TIPDNLLKGNILKVI 540
           S  ++SLD+    LS      L        ++ L     +      I   L     L  +
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 541 DLSDNLLQGRIPRSLA-----NCSNLEFLDLGDNQIRDIFPSW 578
           +L  N L       +          ++ L L +  +       
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 53/410 (12%), Positives = 96/410 (23%), Gaps = 32/410 (7%)

Query: 247 SLKELDLLQNNLSGE-LPNSIGNLASLEQVDLSLNRF----LGKVPSSLGNLTQLHWLSL 301
            ++ LD+    LS       +  L   + V L            + S+L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 302 ASNDFSGELPASFG-----NLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG 356
            SN+                   ++ L +  C  +G     LS+          L+    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 357 KMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQH 416
            +      +  + L        +L L   + S  +     +V     D  E+     + +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 417 HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGE 476
              +  L     +       L          N          +       L SN      
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 477 IPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI 536
           +      L +    L   +    G+  +  G+    L   +                  +
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 537 LKVIDLSDNLLQGRIPRSLANCSNLEFLDLG--------------------DNQIRDIFP 576
           L    L        +     + +                            D  +R++  
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 577 SWLGTLPDLNVLILKSNKF--HGLIREPKTDCGFPKLRIIDLSKNRFTGK 624
                   L VL L               T      LR +DLS N     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 24/279 (8%)

Query: 490 SLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQG 549
           +LDL+  NL   +   L   S  +       +     + ++      ++ +DLS+++++ 
Sbjct: 4   TLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 550 R-IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGF 608
             +   L+ CS L+ L L   ++ D   + L    +L  L L                  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 609 PKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSN 668
            +L  ++                               +  V        +  Y   +  
Sbjct: 121 SRLDELN----------------LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 164

Query: 669 KGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLAD-NSLHGHIPSCLGNL 727
                  ++ P+++   +  S     +       L  LQ LSL+    +       LG +
Sbjct: 165 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 224

Query: 728 TDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTG 766
             L++L +      G +      L  L    ++ +HFT 
Sbjct: 225 PTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 53/268 (19%), Positives = 92/268 (34%), Gaps = 21/268 (7%)

Query: 99  LDLAFNDFDGSEIPPEIINLSSLSYLNLS-SAAFSGQIPSEILELSKLAYLDLSHNSYYD 157
           LDL   +      P     L S   +      +F  Q  +E     ++ ++DLS++    
Sbjct: 5   LDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV--- 57

Query: 158 PVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPS- 216
              +   +L  +  + + L+ L L  + +S PI + L   S+L  L+LSGC         
Sbjct: 58  ---IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 114

Query: 217 -------SLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNL 269
                   L  +      D +   +   +     T+  L      +N    +L   +   
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 270 ASLEQVDLSLN-RFLGKVPSSLGNLTQLHWLSLAS-NDFSGELPASFGNLRSLRTLDVYE 327
            +L  +DLS +             L  L  LSL+   D   E     G + +L+TL V+ 
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 328 CKFSGQIPSSLSNLTHLSFLDFSLNNFS 355
               G +      L HL          +
Sbjct: 235 IVPDGTLQLLKEALPHLQINCSHFTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 37/266 (13%), Positives = 84/266 (31%), Gaps = 18/266 (6%)

Query: 201 TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTF-IGTLGSLKELDLLQNNLS 259
            TL L+G +L    P   G +     +     +   + P     +   ++ +DL  + + 
Sbjct: 3   QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 260 GE-LPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLAS--NDFSGELPASFGN 316
              L   +   + L+ + L   R    + ++L   + L  L+L+         L     +
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 317 LRSLRTLDVYECKFSG------QIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLL 370
              L  L++  C           +      +T L+   +  N     +   +    + + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 371 YHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKING 430
             L  S    +   +        +  ++S C   + E    L     L+ L +     +G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 431 KVPKWLLDPSMQNFGHLNLSHNFLTG 456
            +         +   HL ++ +  T 
Sbjct: 240 TLQLLK-----EALPHLQINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 46/297 (15%), Positives = 91/297 (30%), Gaps = 30/297 (10%)

Query: 421 LDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSW 480
           LDL    ++  V   LL    Q         +F+                       P  
Sbjct: 5   LDLTGKNLHPDVTGRLLS---QGVIAFRCPRSFMDQ---------------------PLA 40

Query: 481 ICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVI 540
                 R++ +DLS + +       + +    L  L L+  + S  I + L K + L  +
Sbjct: 41  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

Query: 541 DLS--DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNV----LILKSNK 594
           +LS      +  +   L++CS L+ L+L            +             +    K
Sbjct: 101 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160

Query: 595 FHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFN 654
                         P L  +DLS +          F   N ++ ++ S    +       
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 655 EGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSL 711
            G      +L +       + + + + L  + ++ + F      +I N K  +I  +
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 3e-08
 Identities = 27/229 (11%), Positives = 64/229 (27%), Gaps = 6/229 (2%)

Query: 514 SILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573
            +   Q +K +  IP +L +      +      L+     + +   +LE +++  N + +
Sbjct: 11  RVFLCQESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 574 IFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCW 633
           +  + + +       I      + L   P+     P L+ + +S                
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 634 NAMKVVNASELRYMQEVIPFNEGNGIYDYSL---TMSNKGQMMSYKKIPDILTAVILSSN 690
             + +     +           G       L       +           +    +  +N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 691 RFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNR 739
             +           G  IL ++   +H      L NL  L +    N +
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 29/226 (12%), Positives = 60/226 (26%), Gaps = 6/226 (2%)

Query: 538 KVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHG 597
           +V    ++ +   IP  L    N   L     ++R I         DL  + +  N    
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 598 LIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASEL---RYMQEVIPFN 654
           +I             I     N      P       N   ++ ++           I   
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 655 EGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADN 714
           +   +        +  +  S+  +      + L+ N        + +  +  ++    +N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 715 SLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVS 760
           +L           +    LD+S  R        L  L  L   +  
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 32/228 (14%), Positives = 53/228 (23%), Gaps = 31/228 (13%)

Query: 396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHL-------- 447
           R        +TEIP  L    +   L     K+                  +        
Sbjct: 11  RVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 448 ---------------------NLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSN 486
                                NL +     F   PN    L+SN  +         +   
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 487 RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNL 546
           ++        N+  +        S    IL L  N              + ++    +N 
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 547 LQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNK 594
           L+          S    LD+   +I  +    L  L  L      + K
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 27/252 (10%), Positives = 62/252 (24%), Gaps = 24/252 (9%)

Query: 271 SLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF 330
           S        ++ + ++PS L        L             +F     L  +++ +   
Sbjct: 9   SNRVFLCQESK-VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 331 SGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNT 390
              I + + +              +          N   L +                  
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY------------------ 107

Query: 391 TSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLS 450
                    +           L+        ++  + I       L   S+  + + N  
Sbjct: 108 --LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 165

Query: 451 HNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFS 510
                            +S+N+   E+P+ + + ++    LD+S   +  L    L N  
Sbjct: 166 QEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 225

Query: 511 DWLSILDLQHNK 522
             L      + K
Sbjct: 226 K-LRARSTYNLK 236

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.0 bits (123), Expect = 7e-08
 Identities = 38/235 (16%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 527 IPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586
            PD  L   I   I    + +   +  + A+   +  L      +  I    +  L +L 
Sbjct: 13  FPDPALANAIK--IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLI 66

Query: 587 VLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRY 646
            L LK N+   L                             +      A      +    
Sbjct: 67  GLELKDNQITDLAPLKNLTK-----------ITELELSGNPLKNVSAIAGLQSIKTLDLT 115

Query: 647 MQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGL 706
             ++       G+ +  +   +  Q+ +   +  +     LS         T ++NL  L
Sbjct: 116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL 175

Query: 707 QILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSD 761
             L   DN +    P  L +L +L  + L NN+ S   P  L   + L    +++
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 8e-07
 Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 19/229 (8%)

Query: 292 NLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSL 351
            L     ++   ++ +  +  +  +L  + TL  +    +      +  L +L  L+   
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 352 NNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF 411
           N  +            K L  +       + L   ++       + + L S  +T++   
Sbjct: 73  NQITDLA-------PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL 125

Query: 412 LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNN 471
               +   L           +       ++Q     N   + LT              +N
Sbjct: 126 AGLSNLQVLYL--DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 472 SLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQH 520
            ++   P  + +L N L  + L  N +S + P  L N S+ L I+ L +
Sbjct: 184 KISDISP--LASLPN-LIEVHLKNNQISDVSP--LANTSN-LFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 38/216 (17%), Positives = 77/216 (35%), Gaps = 18/216 (8%)

Query: 70  VIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSA 129
            IK+    S    ++  + +   L  +  L          E    +  L++L  L L   
Sbjct: 21  AIKIAAGKS----NVTDTVTQADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDN 73

Query: 130 AFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSP 189
             +   P + L       L  +       +   +                 L  ++    
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 190 IPHNLTYLSSLTTL-------SLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFI 242
           +  +L  +++++ L        LS  + +    + L N+++L  L    NK+SD  P  +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 243 GTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
            +L +L E+ L  N +S   P  + N ++L  V L+
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 32/230 (13%), Positives = 67/230 (29%), Gaps = 21/230 (9%)

Query: 316 NLRSLRTLDVYECKFSGQIPSS-LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLF 374
            L +   +   +   +  +  + L  +T LS     +    G       +     L  L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-------VQYLNNLIGLE 69

Query: 375 LSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPK 434
           L  N+++ L    + T             +++ I      +                   
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTL-------DLTSTQITDV 122

Query: 435 WLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLS 494
             L             +           T    +S  +      + + NLS  L +L   
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK-LTTLKAD 181

Query: 495 YNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSD 544
            N +S + P  L +  + L  + L++N+ S   P        L ++ L++
Sbjct: 182 DNKISDISP--LASLPN-LIEVHLKNNQISDVSPLANTSN--LFIVTLTN 226

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 41/342 (11%), Positives = 80/342 (23%), Gaps = 46/342 (13%)

Query: 199 SLTTLSLSGCDLRGR----IPSSLGNITRLIHLDLSFNKLSDE----LPTFIGTLGSLKE 250
           S+   SL    +       + + L     +  + LS N +  E    L   I +   L+ 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 251 LDLLQN---NLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS 307
            +        +  E+P ++  L         L+       +      +     L+ +   
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 308 GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH 367
             L      L       +        +     N   L  +    N        +      
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 368 KLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNK 427
                  +   +  +  +   +                 +   F                
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS---------- 233

Query: 428 INGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSN- 486
                   +   S  N   L L+   L+                     +      L N 
Sbjct: 234 -----ALAIALKSWPNLRELGLNDCLLSARGAAA---------------VVDAFSKLENI 273

Query: 487 RLESLDLSYNNLSG----LLPQCLGNFSDWLSILDLQHNKFS 524
            L++L L YN +       L   +      L  L+L  N+FS
Sbjct: 274 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 31/299 (10%), Positives = 74/299 (24%), Gaps = 14/299 (4%)

Query: 476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNF---SDWLSILDLQHNKFSGTIPDNLL 532
            + + +    + ++ + LS N +     + L         L I +           +   
Sbjct: 22  SVFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE 80

Query: 533 KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSW-LGTLPDLNVLILK 591
              +L    L    L        A     +   +             L           K
Sbjct: 81  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 140

Query: 592 SNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVI 651
             +    +   K     P LR I   +NR          + + + ++++  ++       
Sbjct: 141 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 200

Query: 652 PFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSL 711
              E        L    + +++  +            +             L    + + 
Sbjct: 201 EGIEHL--LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 258

Query: 712 ADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVE-----LTFLEFFNVSDNHFT 765
              ++             L++L L  N       + L       +  L F  ++ N F+
Sbjct: 259 GAAAVVDAFSKL--ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 9e-04
 Identities = 46/357 (12%), Positives = 89/357 (24%), Gaps = 57/357 (15%)

Query: 404 DLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLD--PSMQNFGHLNLSHNFLTGFDQHP 461
           D   +   L     ++ + L+ N I  +  +WL +   S ++      S  F        
Sbjct: 19  DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT------- 71

Query: 462 NTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHN 521
                      +  EIP  +  L   L      +                 +  L     
Sbjct: 72  ---------GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 522 KFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGT 581
                + +N L       I     L +  + +   N   L  +  G N++ +        
Sbjct: 123 LEHLYLHNNGLGPQAGAKIA--RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE--- 177

Query: 582 LPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNA 641
                                KT      L  + + +N    +          A      
Sbjct: 178 -------------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 218

Query: 642 SELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSIS 701
                                    + +   ++   +     A ++ +            
Sbjct: 219 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK--------L 270

Query: 702 NLKGLQILSLADNSLHGHIPSCL-----GNLTDLESLDLSNNRFS--GQIPQQLVEL 751
              GLQ L L  N +       L       + DL  L+L+ NRFS    +  ++ E+
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 532 LKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD----IFPSWLGTLPDLNV 587
           ++G  LK+  ++    +  +   L    +++ + L  N I           + +  DL +
Sbjct: 5   IEGKSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 588 LILKSNKFHGLIRE 601
                     +  E
Sbjct: 64  AEFSDIFTGRVKDE 77

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 31/211 (14%), Positives = 68/211 (32%), Gaps = 19/211 (9%)

Query: 527 IPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586
             D+     I    +L    +   +  +    ++++ +   ++ I+ +    +  LP++ 
Sbjct: 18  FSDDAFAETIKD--NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVT 71

Query: 587 VLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRY 646
            L L  NK                L+ +                   +  K+ + S    
Sbjct: 72  KLFLNGNKLTD-------IKPLANLKNLGWLFLDENK--VKDLSSLKDLKKLKSLSLEHN 122

Query: 647 MQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGL 706
               I         +     +NK   ++       L  + L  N+    +P  ++ L  L
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 707 QILSLADNSLHGHIPSCLGNLTDLESLDLSN 737
           Q L L+ N +       L  L +L+ L+L +
Sbjct: 181 QNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 13/177 (7%)

Query: 416 HHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTG 475
           + ++ +   ++ I        L     N   L L+ N LT      N  N          
Sbjct: 46  NSIDQIIANNSDIKSVQGIQYL----PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK 101

Query: 476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGN 535
                      +L+       +L       +        +  L       T    L +  
Sbjct: 102 VKDLSSLKDLKKLK-----SLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT 156

Query: 536 ILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS 592
            L  + L DN +   +P  LA  + L+ L L  N I D+    L  L +L+VL L S
Sbjct: 157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 209

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
           ++  LT  +   +  L   +  LDLS+N L           +    +  LQ +  +    
Sbjct: 6   AHKDLT--VLCHLEQLLL-VTHLDLSHNRLRA----LPPALAALRCLEVLQASDNALENV 58

Query: 529 DNLLKGNILKVIDLSDNLLQG-RIPRSLANCSNLEFLDLGDNQI---RDIFPSWLGTLPD 584
           D +     L+ + L +N LQ     + L +C  L  L+L  N +     I       LP 
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 585 LNVLI 589
           ++ ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 12/128 (9%)

Query: 202 TLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGE 261
            L L+  DL   +   L  +  + HLDLS N+L    P     L  L+ L    ++ + E
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQ--ASDNALE 56

Query: 262 LPNSIGNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASNDFSGE------LPASF 314
             + + NL  L+++ L  NR         L +  +L  L+L  N    E      L    
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 315 GNLRSLRT 322
            ++ S+ T
Sbjct: 117 PSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT 455
           R + L   DLT +   L+    +  LDL+ N++    P       ++     + +   + 
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 456 GFDQHPNTVNYLVSNNSLTG-EIPSWICNLSNRLESLDLSYNNLSGL 501
           G    P     L+ NN L        + +    L  L+L  N+L   
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR-LVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
           +L L H     T+  +L +  ++  +DLS N L+   P +LA    LE L   DN + ++
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 575 FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGK 624
                  LP L  L+L +N+        +     P+L +++L  N    +
Sbjct: 59  DGVA--NLPRLQELLLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSG 308
           + L L   +L+      +  L  +  +DLS NR L  +P +L  L  L  L   ++D + 
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQ--ASDNAL 55

Query: 309 ELPASFGNLRSLRTLDVYECKF-SGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH 367
           E      NL  L+ L +   +         L +   L  L+   N+   +  +   L   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 22/172 (12%)

Query: 469 SNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP 528
           +   L  EIP    ++      L L+ N L  +    L      L  L+L+ N+ +G  P
Sbjct: 16  TGRGLK-EIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71

Query: 529 DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVL 588
           +     + ++ + L +N ++    +       L+ L+L DNQI  + P     L  L  L
Sbjct: 72  NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131

Query: 589 ILKSNKFHGL--------------IREPKTDCGFPK----LRIIDLSKNRFT 622
            L SN F+                +      CG P     ++I DL  + F 
Sbjct: 132 NLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 24/177 (13%)

Query: 199 SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFI-GTLGSLKELDLLQNN 257
             TT+  +G  L+  IP  +        L L+ N+L       + G L  L +L+L +N 
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 258 LSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
           L+G  PN+    + ++++ L  N+           L QL  L+L  N  S  +P SF +L
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 318 RSLRTLDVYECKFSGQIP--------------------SSLSNLTHLSFLDFSLNNF 354
            SL +L++    F+                         + S +  +   D   + F
Sbjct: 126 NSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 7/138 (5%)

Query: 254 LQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPAS 313
           L+     +L   +       Q  L L     +    L        L+   +  +  L   
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNR-RSSMAATLRII 60

Query: 314 FGNLRSLRTLDVYECKFSGQ--IPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLY 371
             N+  L +L++   +      + S +    +L  L+ S N    + +LD          
Sbjct: 61  EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE-- 118

Query: 372 HLFLSTNRLSLLTKATSN 389
            L+L  N LS   +  S 
Sbjct: 119 ELWLDGNSLSDTFRDQST 136

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 7/95 (7%)

Query: 542 LSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIRE 601
           L+  L++        N      LDL   +I  I  +   TL   + +    N+   L   
Sbjct: 3   LTAELIEQAA--QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 602 PKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAM 636
           P       +L+ + ++ NR       +     +  
Sbjct: 60  P----LLRRLKTLLVNNNRICRIGEGLDQALPDLT 90

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLI 589
           N ++    + +DL    +   I    A     + +D  DN+IR +       L  L  L+
Sbjct: 16  NAVR---DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLL 69

Query: 590 LKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAM 636
           + +N+   +      D   P L  + L+ N               ++
Sbjct: 70  VNNNRICRIG--EGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 114

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 5/146 (3%)

Query: 679 PDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPS-CLGNLTDLESLDLSN 737
           P   + +  + +    +    +   + L  L + +     H+    L  L +L +L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 738 NRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCG---RPLS 794
           +      P        L   N+S N       +  Q  +  +    GN   C    R L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 795 SECEISEAPTNEDQIEDSEESLLSGV 820
              E       E +++   +  L+ +
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHM 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	930
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.32
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.31
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.3
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.06
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.05
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.02
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.03
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.52
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.61

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.7e-40  Score=361.40  Aligned_cols=295  Identities=33%  Similarity=0.530  Sum_probs=205.8

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCc--ccceEecCCC--CcEEEEEcCCCCC
Q 047985            5 LCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCS--WDGVQCNENT--GHVIKLDLSSSCL   80 (930)
Q Consensus         5 ~c~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~--w~gv~C~~~~--~~v~~L~L~~~~l   80 (930)
                      -|+++||+|||+||+++.++.               .+++|..    ++|||.  |+||+|+..+  +||++|||+++.+
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~---------------~l~sW~~----~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l   62 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT---------------TLSSWLP----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL   62 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG---------------GGTTCCT----TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC---------------cCCCCCC----CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCC
Confidence            599999999999999998763               5899987    679994  9999998754  4899999999999


Q ss_pred             cccccCcccccCCCCCCEEECCC-CCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCc
Q 047985           81 QGSINSSSSLFKLVHLEWLDLAF-NDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPV  159 (930)
Q Consensus        81 ~g~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~  159 (930)
                      .|...-...+++|++|++|+|++ |.++|. +|+.|+++++|++|+|++|++.+..|..+..+.+|+++++++|.+    
T Consensus        63 ~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~----  137 (313)
T d1ogqa_          63 PKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL----  137 (313)
T ss_dssp             SSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE----
T ss_pred             CCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccc----
Confidence            88532223788888888888876 677775 788888888888888888888887777778888888888887732    


Q ss_pred             cccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCC-CEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCch
Q 047985          160 ELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSL-TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDEL  238 (930)
Q Consensus       160 ~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  238 (930)
                      .   ..+|..+.++++|+++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..+ .++++.+...+.+
T Consensus       138 ~---~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~  213 (313)
T d1ogqa_         138 S---GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDA  213 (313)
T ss_dssp             E---SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECC
T ss_pred             c---ccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            2   3445556666666666666666666666666665554 566666666666666655555433 4666666666666


Q ss_pred             hhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCccccccc
Q 047985          239 PTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLR  318 (930)
Q Consensus       239 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  318 (930)
                      |..+..+++++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|..|+++++|++|+|++|+++|.+|. +++++
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~  291 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQ  291 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGG
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCC
Confidence            6666666666666666666655443 355566666666666666666666666666666666666666655553 45556


Q ss_pred             ccceeeccccc
Q 047985          319 SLRTLDVYECK  329 (930)
Q Consensus       319 ~L~~L~L~~n~  329 (930)
                      +|+.+++++|+
T Consensus       292 ~L~~l~l~~N~  302 (313)
T d1ogqa_         292 RFDVSAYANNK  302 (313)
T ss_dssp             GSCGGGTCSSS
T ss_pred             CCCHHHhCCCc
Confidence            66666666664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=1.4e-32  Score=298.39  Aligned_cols=259  Identities=35%  Similarity=0.542  Sum_probs=226.0

Q ss_pred             cccceeecccccccC--cCcccccccccCCceeecCC-CccccccCcccCCCCCccEEEccCccccccCCccccCCCCCc
Q 047985          486 NRLESLDLSYNNLSG--LLPQCLGNFSDWLSILDLQH-NKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLE  562 (930)
Q Consensus       486 ~~L~~L~Ls~N~l~~--~~p~~l~~~~~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  562 (930)
                      .+++.|+|++|.++|  .+|..+++++. |++|+|++ |+++|.+|..++++++|++|+|++|++.+..+..+..+..|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~-L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcc-ccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            358888888888887  47788888886 99999986 788888898898999999999999999988888888899999


Q ss_pred             EecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCc-eEEECCCCcCcccCChHHHhhcccceeccc
Q 047985          563 FLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKL-RIIDLSKNRFTGKLPSMAFQCWNAMKVVNA  641 (930)
Q Consensus       563 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~  641 (930)
                      .+++++|++.+.+|..+..++.|+++++++|++.+.+|...  ..+..+ +.+++++|+++|..|.. +..         
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~l~~~~~~~-~~~---------  196 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPT-FAN---------  196 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGG-GGG---------
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccc--cccccccccccccccccccccccc-ccc---------
Confidence            99999999999999999999999999999999988887655  445554 88999999999877743 111         


Q ss_pred             cccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCc
Q 047985          642 SELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIP  721 (930)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  721 (930)
                                                            .....++++.+.+.|.+|..++.++.|+.|++++|.+++.+|
T Consensus       197 --------------------------------------l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~  238 (313)
T d1ogqa_         197 --------------------------------------LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG  238 (313)
T ss_dssp             --------------------------------------CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred             --------------------------------------cccccccccccccccccccccccccccccccccccccccccc
Confidence                                                  114568999999999999999999999999999999998776


Q ss_pred             ccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCCCcCccCCcccCCCCCCCCCCCCCCC
Q 047985          722 SCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSEC  797 (930)
Q Consensus       722 ~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~~~~~~~~~s~~gn~~Lcg~~l~~~c  797 (930)
                       .++.+++|+.|||++|+++|.+|+.|+++++|++|||++|+|+|.||+.+.+..++..++.||+.+||.|+. .|
T Consensus       239 -~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         239 -KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             -GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             -ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence             589999999999999999999999999999999999999999999999888889999999999999999875 56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=5.1e-26  Score=253.62  Aligned_cols=185  Identities=30%  Similarity=0.382  Sum_probs=128.9

Q ss_pred             CceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC
Q 047985          513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS  592 (930)
Q Consensus       513 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  592 (930)
                      ++.+++++|.+++..|  ....++|++|++++|+++..  ..+..+++|+.|++++|++++..+  +..+++|++|++++
T Consensus       199 ~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~  272 (384)
T d2omza2         199 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA  272 (384)
T ss_dssp             CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             cceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccC
Confidence            5555555555554333  23345566666666666542  245666777777777777766543  66677777777777


Q ss_pred             CcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccc
Q 047985          593 NKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQM  672 (930)
Q Consensus       593 N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (930)
                      |++.+..+    ...++.++.+++++|.+++. +.  +.                                         
T Consensus       273 ~~l~~~~~----~~~~~~l~~l~~~~n~l~~~-~~--~~-----------------------------------------  304 (384)
T d2omza2         273 NQISNISP----LAGLTALTNLELNENQLEDI-SP--IS-----------------------------------------  304 (384)
T ss_dssp             SCCCCCGG----GTTCTTCSEEECCSSCCSCC-GG--GG-----------------------------------------
T ss_pred             cccCCCCc----cccccccccccccccccccc-cc--cc-----------------------------------------
Confidence            77766532    24567778888888877641 10  00                                         


Q ss_pred             cccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCC
Q 047985          673 MSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELT  752 (930)
Q Consensus       673 ~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~  752 (930)
                           ....++.|++++|++++..|  +..+++|+.|++++|++++ +| .++++++|++|||++|++++.+|  +.+++
T Consensus       305 -----~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~  373 (384)
T d2omza2         305 -----NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLT  373 (384)
T ss_dssp             -----GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred             -----hhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCC
Confidence                 13447888999999986533  7889999999999999984 45 58999999999999999998765  88999


Q ss_pred             CCCeeecCCC
Q 047985          753 FLEFFNVSDN  762 (930)
Q Consensus       753 ~L~~L~ls~N  762 (930)
                      +|+.|++++|
T Consensus       374 ~L~~L~L~~N  383 (384)
T d2omza2         374 RITQLGLNDQ  383 (384)
T ss_dssp             TCSEEECCCE
T ss_pred             CCCEeeCCCC
Confidence            9999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.7e-24  Score=241.10  Aligned_cols=106  Identities=25%  Similarity=0.280  Sum_probs=62.4

Q ss_pred             ccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhh
Q 047985           90 LFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNL  169 (930)
Q Consensus        90 l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~  169 (930)
                      ...+.+|++|+++++.++.  + +.+..+++|++|+|++|.+++. | .++++++|++|++++|.+.+        ++ .
T Consensus        40 ~~~l~~l~~L~l~~~~I~~--l-~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~--------i~-~  105 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD--------IT-P  105 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC--------CG-G
T ss_pred             HHHhCCCCEEECCCCCCCC--c-cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccc--------cc-c
Confidence            3456677888888777764  2 3467777788888888777743 3 27777777777777775321        11 2


Q ss_pred             hhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCC
Q 047985          170 ADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR  211 (930)
Q Consensus       170 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  211 (930)
                      +.++++|+.|+++++.+++..+  ......+..+....+.+.
T Consensus       106 l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~  145 (384)
T d2omza2         106 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS  145 (384)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC
T ss_pred             cccccccccccccccccccccc--cccccccccccccccccc
Confidence            4555566666665555544322  223344444444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.7e-22  Score=215.66  Aligned_cols=267  Identities=22%  Similarity=0.252  Sum_probs=197.7

Q ss_pred             CcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCch-hccCCCCCCEEEccCCCCCcc
Q 047985           56 CSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPP-EIINLSSLSYLNLSSAAFSGQ  134 (930)
Q Consensus        56 C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~-~l~~l~~L~~L~Ls~n~l~~~  134 (930)
                      |.|++|.|...            +++ .+|+  .+  .+++++|+|++|.++.  +|+ .|.++++|++|++++|.+...
T Consensus        10 c~~~~~~C~~~------------~L~-~lP~--~l--~~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i   70 (305)
T d1xkua_          10 CHLRVVQCSDL------------GLE-KVPK--DL--PPDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKI   70 (305)
T ss_dssp             EETTEEECTTS------------CCC-SCCC--SC--CTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCB
T ss_pred             ecCCEEEecCC------------CCC-ccCC--CC--CCCCCEEECcCCcCCC--cChhHhhcccccccccccccccccc
Confidence            78999999742            233 2333  33  2689999999999875  554 689999999999999999977


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCC--C
Q 047985          135 IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR--G  212 (930)
Q Consensus       135 ~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~  212 (930)
                      .|..|.++++|++|++++|++.        .+|.  .....++.|++.+|.+.+..+..+.....++.++...|...  .
T Consensus        71 ~~~~f~~l~~L~~L~l~~n~l~--------~l~~--~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~  140 (305)
T d1xkua_          71 SPGAFAPLVKLERLYLSKNQLK--------ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG  140 (305)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCS--------BCCS--SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred             chhhhhCCCccCEecccCCccC--------cCcc--chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccC
Confidence            7888999999999999999642        2222  23457888888888888777777777788888888777543  3


Q ss_pred             CCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCC
Q 047985          213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN  292 (930)
Q Consensus       213 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  292 (930)
                      ..+..+..+++|+.+++++|.+... |..  .+++|++|++++|..++..+..|..++.+++|++++|.+++..+..+.+
T Consensus       141 ~~~~~~~~l~~L~~l~l~~n~l~~l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         141 IENGAFQGMKKLSYIRIADTNITTI-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSC-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             CCccccccccccCccccccCCcccc-Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccc
Confidence            3455677788888888888877643 332  3567888888888888777778888888888888888888777777888


Q ss_pred             CcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCccc------ccCCCCCCEEEccCCCCC
Q 047985          293 LTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS------LSNLTHLSFLDFSLNNFS  355 (930)
Q Consensus       293 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~------l~~l~~L~~L~Ls~n~l~  355 (930)
                      +++|++|+|++|+++ .+|.++..+++|++|++++|+++......      +..+.+|+.|++++|++.
T Consensus       218 l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            888888888888887 45777788888888888888877432222      234566667777776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=4.2e-22  Score=214.19  Aligned_cols=121  Identities=23%  Similarity=0.234  Sum_probs=60.0

Q ss_pred             CceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC
Q 047985          513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS  592 (930)
Q Consensus       513 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  592 (930)
                      |+.|++++|..++..+..+..++.+++|++++|.+++..+..+.++++|++|+|++|+|+.+ |.++..+++|++|+|++
T Consensus       173 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCS
T ss_pred             cCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccccCCCEEECCC
Confidence            33333333333333333333344444444444444444444444444555555555544432 34444555555555555


Q ss_pred             CcccccCCCCC----ccCCCCCceEEECCCCcCc-ccCChHHHhhcc
Q 047985          593 NKFHGLIREPK----TDCGFPKLRIIDLSKNRFT-GKLPSMAFQCWN  634 (930)
Q Consensus       593 N~l~~~~~~~~----~~~~l~~L~~LdLs~N~l~-g~ip~~~~~~l~  634 (930)
                      |+|+.+....+    .....++|+.|+|++|++. ..+++..|.++.
T Consensus       252 N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~  298 (305)
T d1xkua_         252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY  298 (305)
T ss_dssp             SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred             CccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccc
Confidence            55544322221    1234577888888888875 567777666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.3e-22  Score=212.53  Aligned_cols=227  Identities=22%  Similarity=0.255  Sum_probs=169.7

Q ss_pred             eeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEeccc-C
Q 047985          490 SLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLG-D  568 (930)
Q Consensus       490 ~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls-~  568 (930)
                      .++.++++++ .+|..+.   .++++|+|++|+|++..+..|.+++.|++|++++|++.+..+..+..+..++.++.. .
T Consensus        15 ~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4456666665 4555432   247777777777775555567777778888888888777777777777777777654 5


Q ss_pred             ccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccccccc
Q 047985          569 NQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQ  648 (930)
Q Consensus       569 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~  648 (930)
                      |.++...+..|.++++|++|++++|.+....+...  ...++|+.+++++|++++ +|...|..                
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~~-i~~~~f~~----------------  151 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQA-LPDDTFRD----------------  151 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCC-CCTTTTTT----------------
T ss_pred             cccccccchhhcccccCCEEecCCccccccccccc--chhcccchhhhccccccc-cChhHhcc----------------
Confidence            66777777778888888888888888766554433  456778888888888873 44332221                


Q ss_pred             ccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccC
Q 047985          649 EVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLT  728 (930)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~  728 (930)
                                                    ...|+.|++++|++++..+..|.++++|+.+++++|++++..|..|++++
T Consensus       152 ------------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~  201 (284)
T d1ozna_         152 ------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (284)
T ss_dssp             ------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             ------------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhh
Confidence                                          23477888888888888888888889999999999999988889999999


Q ss_pred             CCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCC
Q 047985          729 DLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIP  769 (930)
Q Consensus       729 ~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP  769 (930)
                      +|++||+++|++++..|..|..+++|++|++++|++.+.-+
T Consensus       202 ~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            99999999999988888888889999999999998886543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.3e-22  Score=210.95  Aligned_cols=147  Identities=24%  Similarity=0.292  Sum_probs=98.5

Q ss_pred             cccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCc
Q 047985          215 PSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLT  294 (930)
Q Consensus       215 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  294 (930)
                      +..+.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|+.|++++|++++..+.+|.+++
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~  177 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccc
Confidence            44455555555555555555544445555556666666666666655555666666777777777777666666677777


Q ss_pred             CCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchh
Q 047985          295 QLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLD  361 (930)
Q Consensus       295 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~  361 (930)
                      +|+.+++++|++++..|..|..+++|++|++++|++.+..+..|+.+++|++|++++|++.+..+..
T Consensus       178 ~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence            7777777777777766777777777777777777777777777777777888888888777655443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.7e-21  Score=201.29  Aligned_cols=197  Identities=25%  Similarity=0.314  Sum_probs=137.1

Q ss_pred             CceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC
Q 047985          513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS  592 (930)
Q Consensus       513 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  592 (930)
                      +.+++.++++++ .+|..+.  +.+++|+|++|+|++..+..|.++++|++|+|++|+|+.+.  .++.+++|++|+|++
T Consensus        12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCS
T ss_pred             CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccccc
Confidence            444555555555 3454442  34666666666666555566666677777777777666542  245667777777777


Q ss_pred             CcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccc
Q 047985          593 NKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQM  672 (930)
Q Consensus       593 N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (930)
                      |++++..+   .+..+++|+.|++++|.+.+..+ ..+.                                         
T Consensus        87 N~l~~~~~---~~~~l~~L~~L~l~~~~~~~~~~-~~~~-----------------------------------------  121 (266)
T d1p9ag_          87 NQLQSLPL---LGQTLPALTVLDVSFNRLTSLPL-GALR-----------------------------------------  121 (266)
T ss_dssp             SCCSSCCC---CTTTCTTCCEEECCSSCCCCCCS-STTT-----------------------------------------
T ss_pred             cccccccc---ccccccccccccccccccceeec-cccc-----------------------------------------
Confidence            77665422   22456777777777777653222 1111                                         


Q ss_pred             cccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCC
Q 047985          673 MSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELT  752 (930)
Q Consensus       673 ~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~  752 (930)
                           ....++.|++++|.+++..+..+..++.|+.|++++|++++..|..|+.+++|++|||++|+|+ .+|+++..++
T Consensus       122 -----~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~  195 (266)
T d1p9ag_         122 -----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (266)
T ss_dssp             -----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             -----cccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCC
Confidence                 1344778888888888777777788889999999999999888888899999999999999998 7888888889


Q ss_pred             CCCeeecCCCccc
Q 047985          753 FLEFFNVSDNHFT  765 (930)
Q Consensus       753 ~L~~L~ls~N~L~  765 (930)
                      +|+.|+|++|++.
T Consensus       196 ~L~~L~L~~Np~~  208 (266)
T d1p9ag_         196 LLPFAFLHGNPWL  208 (266)
T ss_dssp             CCSEEECCSCCBC
T ss_pred             CCCEEEecCCCCC
Confidence            9999999988765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.9e-20  Score=192.24  Aligned_cols=176  Identities=23%  Similarity=0.241  Sum_probs=80.2

Q ss_pred             CCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCC
Q 047985          120 SLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSS  199 (930)
Q Consensus       120 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  199 (930)
                      +|++|+|++|.+++..+..|.++++|++|+|++|.+.        .++ .+..+++|++|++++|.++.. +..+.++++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~--------~l~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~  101 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--------KLQ-VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPA  101 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC--------EEE-CCSCCTTCCEEECCSSCCSSC-CCCTTTCTT
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccc--------ccc-ccccccccccccccccccccc-ccccccccc
Confidence            4555555555555333344455555555555555321        111 012233333333333333221 223444445


Q ss_pred             CCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccC
Q 047985          200 LTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSL  279 (930)
Q Consensus       200 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  279 (930)
                      |+.|++++|.+....+..+..+.++++|++++|.++...+..+..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus       102 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeeccc
Confidence            55555555544444444444445555555555555444444444455555555555555544444445555555555555


Q ss_pred             CCCCCCCCCCCCCCcCCcEEEccCCCC
Q 047985          280 NRFLGKVPSSLGNLTQLHWLSLASNDF  306 (930)
Q Consensus       280 n~l~~~~p~~l~~l~~L~~L~Ls~N~l  306 (930)
                      |+++ .+|..+..+++|+.|+|++|.+
T Consensus       182 N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         182 NSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             SCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            5544 3444444445555555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=1.3e-16  Score=174.06  Aligned_cols=302  Identities=23%  Similarity=0.272  Sum_probs=173.2

Q ss_pred             ccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCC-CcceEEeccCc
Q 047985          394 RFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHP-NTVNYLVSNNS  472 (930)
Q Consensus       394 ~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~l~ls~n~  472 (930)
                      +++.|+++++.++.+|+.   .++|++|++++|+|+ .+|..     ..+|+.|++++|+++.+...| .+++|++++|.
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~-~lp~~-----~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLT-ELPEL-----PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCS-SCCCC-----CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCc-ccccc-----hhhhhhhhhhhcccchhhhhccccccccccccc
Confidence            345555555566666643   356777777777776 45543     356777777777777665543 46666666666


Q ss_pred             CCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCC
Q 047985          473 LTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIP  552 (930)
Q Consensus       473 l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  552 (930)
                      +. .+|. +..+ ++|+.|++++|.+....+ ..   . .+..+.+..+...  .+..+..++.++.+++++|.+.....
T Consensus       110 l~-~lp~-~~~l-~~L~~L~l~~~~~~~~~~-~~---~-~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         110 LE-KLPE-LQNS-SFLKIIDVDNNSLKKLPD-LP---P-SLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             CS-SCCC-CTTC-TTCCEEECCSSCCSCCCC-CC---T-TCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred             cc-cccc-hhhh-ccceeecccccccccccc-cc---c-cccchhhcccccc--ccccccccccceeccccccccccccc
Confidence            65 4453 3344 667777777777663322 11   2 2556666555443  23345556667777777777653221


Q ss_pred             ccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhh
Q 047985          553 RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC  632 (930)
Q Consensus       553 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~  632 (930)
                          .....+.+..+++.+...  ..+..++.|+.+++++|......      ....++..+++.+|.+..... . .  
T Consensus       180 ----~~~~~~~l~~~~~~~~~~--~~~~~l~~L~~l~l~~n~~~~~~------~~~~~l~~~~~~~~~~~~~~~-~-~--  243 (353)
T d1jl5a_         180 ----LPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKTLP------DLPPSLEALNVRDNYLTDLPE-L-P--  243 (353)
T ss_dssp             ----CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSSCC------SCCTTCCEEECCSSCCSCCCC-C-C--
T ss_pred             ----cccccccccccccccccc--ccccccccccccccccccccccc------ccccccccccccccccccccc-c-c--
Confidence                122334555555444432  23456677777777777655432      123456677777776653211 0 0  


Q ss_pred             cccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeecc
Q 047985          633 WNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLA  712 (930)
Q Consensus       633 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls  712 (930)
                       ..+........                          ........+......++..+.+.+.    ...+++|++|+|+
T Consensus       244 -~~l~~~~~~~~--------------------------~~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls  292 (353)
T d1jl5a_         244 -QSLTFLDVSEN--------------------------IFSGLSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVS  292 (353)
T ss_dssp             -TTCCEEECCSS--------------------------CCSEESCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECC
T ss_pred             -ccccccccccc--------------------------cccccccccchhcccccccCccccc----cccCCCCCEEECC
Confidence             01111000000                          0001112233455666777666533    2335788999999


Q ss_pred             CccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCC
Q 047985          713 DNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQ  770 (930)
Q Consensus       713 ~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~  770 (930)
                      +|+++ .+|..   +++|+.|+|++|+|+ .+|..   +++|++|++++|+|+ .+|.
T Consensus       293 ~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         293 NNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             SSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            99988 67754   467888999999987 57754   457888999999987 5664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=2.4e-16  Score=171.99  Aligned_cols=69  Identities=23%  Similarity=0.319  Sum_probs=54.5

Q ss_pred             cccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeee
Q 047985          679 PDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFN  758 (930)
Q Consensus       679 ~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~  758 (930)
                      +++|++|+|++|+|+ .+|..   +++|+.|+|++|+|+ .+|..   +++|++|+|++|+|+ .+|....   .|+.|.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~---~L~~L~  350 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPE---SVEDLR  350 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCT---TCCEEE
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcccc---ccCeeE
Confidence            567999999999998 67754   578999999999998 67764   467999999999998 6776443   455544


Q ss_pred             c
Q 047985          759 V  759 (930)
Q Consensus       759 l  759 (930)
                      +
T Consensus       351 ~  351 (353)
T d1jl5a_         351 M  351 (353)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.4e-20  Score=207.92  Aligned_cols=60  Identities=18%  Similarity=0.256  Sum_probs=36.0

Q ss_pred             CCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCc----cCCccccCCCCCcEEEccCCC
Q 047985           95 HLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSG----QIPSEILELSKLAYLDLSHNS  154 (930)
Q Consensus        95 ~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~  154 (930)
                      +|++||+++|++++..+.+.+..+++|++|+|++|.++.    .++..+..+++|++|||++|.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~   66 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE   66 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc
Confidence            466777777777654344445566677777777776652    233344556666666666663

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=5.8e-17  Score=165.32  Aligned_cols=204  Identities=22%  Similarity=0.259  Sum_probs=110.1

Q ss_pred             EEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEc
Q 047985           71 IKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDL  150 (930)
Q Consensus        71 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  150 (930)
                      +.++++.+.+.+.+    .+..+.+|++|++.+|.++.  + +.+..+++|++|++++|.+++..|  +..+++|+++++
T Consensus        22 ~~~~l~~~~~~d~~----~~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~   92 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV----TQADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL   92 (227)
T ss_dssp             HHHHTTCSSTTSEE----CHHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred             HHHHhCCCCcCCcC----CHHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeecccc--cccccccccccc
Confidence            34455555555433    45667788888888887764  4 347778888888888887775433  677777777777


Q ss_pred             cCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcc
Q 047985          151 SHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLS  230 (930)
Q Consensus       151 s~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  230 (930)
                      ++|.+.        .+ ..+.++++|+.++++++...+.  ..+...+.++.+.+                        +
T Consensus        93 ~~n~~~--------~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~------------------------~  137 (227)
T d1h6ua2          93 SGNPLK--------NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYL------------------------D  137 (227)
T ss_dssp             CSCCCS--------CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC------------------------C
T ss_pred             cccccc--------cc-cccccccccccccccccccccc--chhccccchhhhhc------------------------h
Confidence            777421        11 1234455555555555544332  12333444444444                        4


Q ss_pred             CCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCcc
Q 047985          231 FNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGEL  310 (930)
Q Consensus       231 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  310 (930)
                      .+.+....  .+..+++|++|++++|.+++..  .++++++|++|+|++|++++. + .++++++|++|+|++|++++. 
T Consensus       138 ~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-  210 (227)
T d1h6ua2         138 LNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-  210 (227)
T ss_dssp             SSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             hhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-
Confidence            44443322  1334445555555555444221  244555555555555555432 1 245555555555555555532 


Q ss_pred             Ccccccccccceeecc
Q 047985          311 PASFGNLRSLRTLDVY  326 (930)
Q Consensus       311 p~~l~~l~~L~~L~L~  326 (930)
                      + .++++++|++|+++
T Consensus       211 ~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         211 S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             G-GGTTCTTCCEEEEE
T ss_pred             c-ccccCCCCCEEEee
Confidence            2 24555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-18  Score=198.25  Aligned_cols=391  Identities=18%  Similarity=0.139  Sum_probs=193.9

Q ss_pred             CCCEEEccCCCCCCCC-cccccCCCCCcEEEccCCCCCCc----hhhhhcCCCCCCEEEccCCCCCCC----cchhhc-C
Q 047985          199 SLTTLSLSGCDLRGRI-PSSLGNITRLIHLDLSFNKLSDE----LPTFIGTLGSLKELDLLQNNLSGE----LPNSIG-N  268 (930)
Q Consensus       199 ~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~-~  268 (930)
                      +|++||++++++++.. ..-+..+++++.|+|++|.++..    +...+..+++|++|+|++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4566666666665421 22234456666666666666532    334455566666666666655421    111121 1


Q ss_pred             CCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccc-cCCCC
Q 047985          269 LASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSL-SNLTH  343 (930)
Q Consensus       269 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~  343 (930)
                      ..+|++|+|++|++++.    ++..+..+++|++|++++|.+.......+.                    ..+ .....
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~--------------------~~l~~~~~~  142 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC--------------------EGLLDPQCR  142 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH--------------------HHHTSTTCC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhh--------------------hcccccccc
Confidence            23455555555555432    223344555555555555554421111110                    000 01112


Q ss_pred             CCEEEccCCCCCCCC--chhHHhhccccccEEEccCCcccccccccC----CCCccccceeeeccCCCCC-----cchhh
Q 047985          344 LSFLDFSLNNFSGKM--DLDIFLVNHKLLYHLFLSTNRLSLLTKATS----NTTSHRFRAVSLCSCDLTE-----IPKFL  412 (930)
Q Consensus       344 L~~L~Ls~n~l~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~----~~~~~~L~~L~l~~~~l~~-----ip~~l  412 (930)
                      ...............  ...........++.++++++.....+....    .........+.+..+.+..     +...+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  222 (460)
T d1z7xw1         143 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV  222 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred             cccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccc
Confidence            222222222221110  001111233445555555543322110000    0012233445555555441     22345


Q ss_pred             hcCCCcCEEeCCCCCCcCCCCcc---ccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccc
Q 047985          413 KNQHHLELLDLASNKINGKVPKW---LLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLE  489 (930)
Q Consensus       413 ~~~~~L~~L~Ls~N~l~~~~p~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~  489 (930)
                      ...+.++.+++++|.+.......   ........++.+++++|.+....               .+.....+... +.++
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~---------------~~~~~~~l~~~-~~l~  286 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG---------------CGDLCRVLRAK-ESLK  286 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH---------------HHHHHHHHHHC-TTCC
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccc---------------ccccccccccc-cccc
Confidence            56777888888887764321100   00113455666666666543210               01122233334 6677


Q ss_pred             eeecccccccCcCcccc----cccccCCceeecCCCccccccCc----ccCCCCCccEEEccCcccccc----CCccc-c
Q 047985          490 SLDLSYNNLSGLLPQCL----GNFSDWLSILDLQHNKFSGTIPD----NLLKGNILKVIDLSDNLLQGR----IPRSL-A  556 (930)
Q Consensus       490 ~L~Ls~N~l~~~~p~~l----~~~~~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~----~p~~l-~  556 (930)
                      .+++++|.++......+    ......|+.+++++|.++.....    .+....+|++|+|++|++++.    ++..+ .
T Consensus       287 ~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~  366 (460)
T d1z7xw1         287 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ  366 (460)
T ss_dssp             EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             ccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhc
Confidence            77888877764322211    11111378888888877654322    233446788888888887653    23333 3


Q ss_pred             CCCCCcEecccCcccccc----CcccccCCCCCcEEEccCCcccccCCCCCc---cCCCCCceEEECCCCcCcccC
Q 047985          557 NCSNLEFLDLGDNQIRDI----FPSWLGTLPDLNVLILKSNKFHGLIREPKT---DCGFPKLRIIDLSKNRFTGKL  625 (930)
Q Consensus       557 ~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~---~~~l~~L~~LdLs~N~l~g~i  625 (930)
                      ..+.|++|+|++|+|++.    ++..+..+++|++|+|++|+++......+.   ..+...|+.|++.+|.+....
T Consensus       367 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             ccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            467788899988888753    344566778899999999888643211110   013347999999999987543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.6e-16  Score=159.31  Aligned_cols=165  Identities=24%  Similarity=0.335  Sum_probs=112.9

Q ss_pred             CCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEE
Q 047985          172 KLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL  251 (930)
Q Consensus       172 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  251 (930)
                      ++++|++|++++|.+++..  .+..+++|+++++++|.++. + ..+..+++|+.++++++...+..  .+...+.++.+
T Consensus        61 ~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l  134 (227)
T d1h6ua2          61 YLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVL  134 (227)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEE
T ss_pred             cCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-ccccccccccccccccccccccc--hhccccchhhh
Confidence            3444444444444444432  25666777777777776653 2 34677788888888887776543  35667788888


Q ss_pred             EccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeeccccccc
Q 047985          252 DLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFS  331 (930)
Q Consensus       252 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~  331 (930)
                      .++.+.+....  .+..+++|++|++++|.+.+..  .+.++++|++|+|++|++++. + .++++++|++|++++|+++
T Consensus       135 ~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         135 YLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             ECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             hchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCC
Confidence            88888876443  3667788888888888876443  377888888888888888753 3 3777888888888888877


Q ss_pred             CCCcccccCCCCCCEEEcc
Q 047985          332 GQIPSSLSNLTHLSFLDFS  350 (930)
Q Consensus       332 ~~~p~~l~~l~~L~~L~Ls  350 (930)
                      +. + .+.++++|+.|+++
T Consensus       209 ~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         209 DV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             BC-G-GGTTCTTCCEEEEE
T ss_pred             CC-c-ccccCCCCCEEEee
Confidence            53 3 27778888888775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-16  Score=163.75  Aligned_cols=222  Identities=15%  Similarity=0.094  Sum_probs=152.4

Q ss_pred             cceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccC-CccccCCCCCcEecc
Q 047985          488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRI-PRSLANCSNLEFLDL  566 (930)
Q Consensus       488 L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L  566 (930)
                      .+.++.++..++ .+|..+.  . ++++|+|++|+|+...+..|.++++|++|++++|.+...+ +..|.+++.++++++
T Consensus        10 ~~~i~c~~~~l~-~iP~~l~--~-~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          10 NRVFLCQESKVT-EIPSDLP--R-NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SSEEEEESCSCS-SCCSCSC--S-CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCEEEEeCCCCC-CcCCCCC--C-CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            356777777776 5665443  2 4788888888887544456777888888888888876644 456788888888887


Q ss_pred             cC-ccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccc
Q 047985          567 GD-NQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR  645 (930)
Q Consensus       567 s~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~  645 (930)
                      .. |++....+..|..+++|++|++++|++....+.. ....+..+..+..+++.+. .++...+.              
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~-~~~~l~~l~~~~~~n~~l~-~i~~~~~~--------------  149 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-KIHSLQKVLLDIQDNINIH-TIERNSFV--------------  149 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCT-TTCBSSCEEEEEESCTTCC-EECTTSST--------------
T ss_pred             cccccccccccccccccccccccccchhhhccccccc-ccccccccccccccccccc-cccccccc--------------
Confidence            54 6787777888888888888888888877543322 2234556666666666654 22221111              


Q ss_pred             cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccc-eeeccCccccccCcccc
Q 047985          646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQ-ILSLADNSLHGHIPSCL  724 (930)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~ip~~l  724 (930)
                                                     .....++.|++++|+++...+..+ ....++ .+++++|+++...+..|
T Consensus       150 -------------------------------~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f  197 (242)
T d1xwdc1         150 -------------------------------GLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVF  197 (242)
T ss_dssp             -------------------------------TSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTT
T ss_pred             -------------------------------cccccceeeecccccccccccccc-cchhhhccccccccccccccHHHh
Confidence                                           112347788999999985444444 445544 45678888985555668


Q ss_pred             cccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCC
Q 047985          725 GNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSD  761 (930)
Q Consensus       725 ~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~  761 (930)
                      .++++|+.|||++|+++...+..|.+++.|+++++.+
T Consensus       198 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            9999999999999999955555688888888877654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.2e-16  Score=158.09  Aligned_cols=133  Identities=21%  Similarity=0.243  Sum_probs=109.4

Q ss_pred             cceeecccccccCcCcccccccccCCceeecCCCcccccc-CcccCCCCCccEEEccCccccccCCccccCCCCCcEecc
Q 047985          488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTI-PDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDL  566 (930)
Q Consensus       488 L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  566 (930)
                      .+.++.++++++ .+|..+.   ..+++|+|++|+|++.+ +..|..+++|+.|+|++|++.+..+..|..+++|++|+|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            567888888888 5666543   24888999999987654 456678889999999999999888888999999999999


Q ss_pred             cCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCC
Q 047985          567 GDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLP  626 (930)
Q Consensus       567 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  626 (930)
                      ++|+|+.+.|.+|.++++|++|+|++|+|++..+..+  ..+++|++|+|++|++.+..+
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGG
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHh--cCCcccccccccccccccccc
Confidence            9999999888889999999999999999988876655  678889999999998876544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2e-15  Score=151.51  Aligned_cols=166  Identities=27%  Similarity=0.314  Sum_probs=87.5

Q ss_pred             cCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhh
Q 047985           91 FKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLA  170 (930)
Q Consensus        91 ~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l  170 (930)
                      ..+..|++|++++|.+...  + .+..+++|++|+|++|.+++ ++ .++.+++|++|++++|++.        .++ .+
T Consensus        43 ~~L~~L~~L~l~~~~i~~l--~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~--------~l~-~l  108 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK--------DLS-SL  108 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC--------CGG-GG
T ss_pred             HHhcCccEEECcCCCCCCc--h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc--------ccc-cc
Confidence            3466777777777776642  2 36667777777777777764 33 2566777777777766431        122 24


Q ss_pred             hCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCE
Q 047985          171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE  250 (930)
Q Consensus       171 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  250 (930)
                      .++++|+.|++++|.+...  .                        .+..+++++.+++++|.+++.  ..+..+++|++
T Consensus       109 ~~l~~L~~L~l~~~~~~~~--~------------------------~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~  160 (210)
T d1h6ta2         109 KDLKKLKSLSLEHNGISDI--N------------------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT  160 (210)
T ss_dssp             TTCTTCCEEECTTSCCCCC--G------------------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             ccccccccccccccccccc--c------------------------ccccccccccccccccccccc--ccccccccccc
Confidence            4445555555554444321  2                        344444455555555544432  22344455555


Q ss_pred             EEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEcc
Q 047985          251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLA  302 (930)
Q Consensus       251 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  302 (930)
                      +++++|++++. + .+.++++|++|+|++|+++. +| .+.++++|++|+|+
T Consensus       161 l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         161 LSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             ccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            55555555432 2 24555555555555555542 22 35555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.9e-15  Score=148.92  Aligned_cols=162  Identities=26%  Similarity=0.340  Sum_probs=85.3

Q ss_pred             EcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCC
Q 047985           74 DLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHN  153 (930)
Q Consensus        74 ~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  153 (930)
                      .++.+.+.+.+    ....++++++|++++|.+..  + +.+..+++|++|++++|.+++..|  ++++++|++|++++|
T Consensus        24 ~l~~~~~~~~~----~~~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          24 VLGKTNVTDTV----SQTDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HTTCSSTTSEE----CHHHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HhCCCCCCCcc----CHHHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCccc--ccCCccccccccccc
Confidence            34444444433    33456778888888887764  2 246777888888888887775332  777777888887777


Q ss_pred             CCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCC
Q 047985          154 SYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK  233 (930)
Q Consensus       154 ~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  233 (930)
                      .+        ..++ .+.++++|+.|+++++.+...  ..+..+++|+.|++++|++.. + +.+..+++|+.|++.+|+
T Consensus        95 ~~--------~~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2          95 QI--------ADIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             CC--------CCCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSC
T ss_pred             cc--------cccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-cccccccccccccccccc
Confidence            42        1111 244455555555555444332  224444444444444444432 1 224444444444444444


Q ss_pred             CCCchhhhhcCCCCCCEEEccCCCCC
Q 047985          234 LSDELPTFIGTLGSLKELDLLQNNLS  259 (930)
Q Consensus       234 l~~~~p~~l~~l~~L~~L~L~~n~l~  259 (930)
                      +++..  .++++++|++|++++|+++
T Consensus       162 l~~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         162 VTDLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ccCCc--cccCCCCCCEEECCCCCCC
Confidence            44321  1344444444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.6e-16  Score=158.16  Aligned_cols=200  Identities=14%  Similarity=0.093  Sum_probs=116.6

Q ss_pred             CCCCEEECCCCCCCCCCCch-hccCCCCCCEEEccCCCCCccCC-ccccCCCCCcEEEccCCCCCCCccccCCchhhhhh
Q 047985           94 VHLEWLDLAFNDFDGSEIPP-EIINLSSLSYLNLSSAAFSGQIP-SEILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD  171 (930)
Q Consensus        94 ~~L~~L~Ls~n~~~~~~ip~-~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~  171 (930)
                      +++++|+|++|.++.  +|. .|.++++|++|+|++|.+...++ ..+.++++++++++..+                  
T Consensus        29 ~~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~------------------   88 (242)
T d1xwdc1          29 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA------------------   88 (242)
T ss_dssp             SCCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC------------------
T ss_pred             CCCCEEECcCCcCCc--cChhHhhccchhhhhhhccccccceeecccccccccccccccccc------------------
Confidence            466777777777653  333 46667777777777776655443 34556666666665443                  


Q ss_pred             CCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCc-ccccCCCCCcEEEccCCCCCCchhhhhcCCC-CCC
Q 047985          172 KLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIP-SSLGNITRLIHLDLSFNKLSDELPTFIGTLG-SLK  249 (930)
Q Consensus       172 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~  249 (930)
                                  +.+....+..+.++++|++|++++|.+....+ ..+..++.+..+...++.+....+..+..++ .++
T Consensus        89 ------------n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~  156 (242)
T d1xwdc1          89 ------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV  156 (242)
T ss_dssp             ------------TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred             ------------ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccce
Confidence                        23333344555666666666666666653222 1233445555555556566554445555443 677


Q ss_pred             EEEccCCCCCCCcchhhcCCCCCCEE-EccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecc
Q 047985          250 ELDLLQNNLSGELPNSIGNLASLEQV-DLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY  326 (930)
Q Consensus       250 ~L~L~~n~l~~~~p~~l~~l~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  326 (930)
                      .|++++|+++. ++......++++.+ ++++|+++...+..|.++++|++|+|++|+++...+..|.++++|+.+++.
T Consensus       157 ~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         157 ILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             eeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            77777777763 33333344554444 456666665444557777777777777777775445556666666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=6.6e-15  Score=147.67  Aligned_cols=145  Identities=31%  Similarity=0.403  Sum_probs=67.6

Q ss_pred             ccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCC
Q 047985          194 LTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE  273 (930)
Q Consensus       194 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  273 (930)
                      +..+++|++|++++|++++. + .++.+++|++|++++|++++. + .+..+++|+.|++++|.+.. + ..+..+++|+
T Consensus        64 l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~  137 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE  137 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCC
T ss_pred             HhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccccc-c-cccccccccccccccccccc-c-cccccccccc
Confidence            33444444444444444432 1 234445555555555554432 2 24445555555555554432 1 2344455555


Q ss_pred             EEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEcc
Q 047985          274 QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFS  350 (930)
Q Consensus       274 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  350 (930)
                      .+++++|.+++.  ..+..+++|+++++++|++++. + .+.++++|++|++++|+++. +| .+..+++|++|+|+
T Consensus       138 ~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             cccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            555555554421  2344455555555555555432 1 24455555555555555542 32 35555555555553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=1.4e-15  Score=150.29  Aligned_cols=173  Identities=21%  Similarity=0.247  Sum_probs=123.0

Q ss_pred             CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCC-CcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccC
Q 047985          177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGR-IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQ  255 (930)
Q Consensus       177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  255 (930)
                      +.+++++++++. +|..+.  +++++|+|++|+|++. .+..|.++++|++|++++|.+....+..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            456666666653 454443  5788888888888753 355667888888888888888888888888888888888888


Q ss_pred             CCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCc
Q 047985          256 NNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP  335 (930)
Q Consensus       256 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  335 (930)
                      |+++...|.+|.++++|++|+|++|++++..+.+|..+++|++|+|++|.+....... .-...++.+.+..+.+....|
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCC
Confidence            8888777777888888888888888888777788888888888888888876533211 112345566666676665555


Q ss_pred             ccccCCCCCCEEEccCCCCCC
Q 047985          336 SSLSNLTHLSFLDFSLNNFSG  356 (930)
Q Consensus       336 ~~l~~l~~L~~L~Ls~n~l~~  356 (930)
                      ..   +..++.++++.|.+..
T Consensus       167 ~~---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         167 SK---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             TT---TTTSBGGGSCTTTCCC
T ss_pred             hh---hcCCEeeecCHhhCcC
Confidence            43   3445556666666653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.6e-14  Score=143.49  Aligned_cols=29  Identities=10%  Similarity=0.171  Sum_probs=14.4

Q ss_pred             EEccCCCCCccCCccccCCCCCcEEEccCCC
Q 047985          124 LNLSSAAFSGQIPSEILELSKLAYLDLSHNS  154 (930)
Q Consensus       124 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  154 (930)
                      +.++.+.+++.++  ...++++++|++++|.
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~   51 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLG   51 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCC
Confidence            3445555554332  2345556666666653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.7e-15  Score=157.01  Aligned_cols=186  Identities=23%  Similarity=0.246  Sum_probs=92.0

Q ss_pred             CCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhh
Q 047985           92 KLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD  171 (930)
Q Consensus        92 ~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~  171 (930)
                      ....|++|||+++.++...++..+..+++|++|+|+++.+++..+..++++++|++|+++++.-     +.+..+...+.
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~-----itd~~l~~l~~  118 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG-----FSEFALQTLLS  118 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS-----CCHHHHHHHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccc-----ccccccchhhH
Confidence            3446666666666655433444455666666666666666655556666666666666666521     11122333344


Q ss_pred             CCCCCCEEEcCCcc-CCCC-CchhccC-CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCc-hhhhhcCCCC
Q 047985          172 KLTNLKELVLGDVT-ISSP-IPHNLTY-LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDE-LPTFIGTLGS  247 (930)
Q Consensus       172 ~l~~L~~L~L~~n~-l~~~-~~~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~  247 (930)
                      .+++|++|+++++. ++.. +...+.. .++|+.|+++++.                      +.++.. +...+..+++
T Consensus       119 ~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------~~i~~~~l~~l~~~~~~  176 (284)
T d2astb2         119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR----------------------KNLQKSDLSTLVRRCPN  176 (284)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG----------------------GGSCHHHHHHHHHHCTT
T ss_pred             HHHhccccccccccccccccchhhhcccccccchhhhcccc----------------------ccccccccccccccccc
Confidence            55556666655542 2211 1111211 2344555444331                      012211 2222334555


Q ss_pred             CCEEEccCC-CCCCCcchhhcCCCCCCEEEccCC-CCCCCCCCCCCCCcCCcEEEccCC
Q 047985          248 LKELDLLQN-NLSGELPNSIGNLASLEQVDLSLN-RFLGKVPSSLGNLTQLHWLSLASN  304 (930)
Q Consensus       248 L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~N  304 (930)
                      |++|++++| .+++.....+..+++|++|++++| .+++.....++++++|+.|+++++
T Consensus       177 L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            555555554 244444455555566666666553 344444444555666666666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.1e-15  Score=154.36  Aligned_cols=58  Identities=22%  Similarity=0.192  Sum_probs=31.4

Q ss_pred             cccEEEcccc-cccccCchhcccccccceeeccCc-cccccCcccccccCCCCeeeCCCC
Q 047985          681 ILTAVILSSN-RFDGEIPTSISNLKGLQILSLADN-SLHGHIPSCLGNLTDLESLDLSNN  738 (930)
Q Consensus       681 ~L~~L~Ls~N-~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N  738 (930)
                      .|+.||+++| .+++..+..++++++|++|+|+++ .+++.....++++++|+.|+++++
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3555555553 345555555555555566666553 455444445555555555555555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=8.5e-15  Score=159.17  Aligned_cols=138  Identities=22%  Similarity=0.261  Sum_probs=80.1

Q ss_pred             CCCCCcEEEccCCCCCCc----hhhhhcCCCCCCEEEccCCCCCCC-----cchhhcCCCCCCEEEccCCCCCCC----C
Q 047985          220 NITRLIHLDLSFNKLSDE----LPTFIGTLGSLKELDLLQNNLSGE-----LPNSIGNLASLEQVDLSLNRFLGK----V  286 (930)
Q Consensus       220 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~----~  286 (930)
                      ..+.|+.+++++|.++..    +...+...+.|++|++++|.++..     +...+..+++|+.|+|++|.++..    +
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            345566666666655432    223344556666666666666531     223355666777777777765432    2


Q ss_pred             CCCCCCCcCCcEEEccCCCCCCccCc----ccc--cccccceeecccccccCC----Cccccc-CCCCCCEEEccCCCCC
Q 047985          287 PSSLGNLTQLHWLSLASNDFSGELPA----SFG--NLRSLRTLDVYECKFSGQ----IPSSLS-NLTHLSFLDFSLNNFS  355 (930)
Q Consensus       287 p~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~--~l~~L~~L~L~~n~l~~~----~p~~l~-~l~~L~~L~Ls~n~l~  355 (930)
                      ...+..+++|++|+|++|.+++.-..    .+.  ..+.|++|++++|+++..    +...+. ++++|+.|++++|.+.
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            33455667777777777776643222    222  235677888888876542    222332 4678888888888886


Q ss_pred             CC
Q 047985          356 GK  357 (930)
Q Consensus       356 ~~  357 (930)
                      ..
T Consensus       316 ~~  317 (344)
T d2ca6a1         316 EE  317 (344)
T ss_dssp             TT
T ss_pred             Cc
Confidence            43

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=3.2e-14  Score=154.52  Aligned_cols=251  Identities=19%  Similarity=0.161  Sum_probs=152.8

Q ss_pred             CchhccCCCCCCEEEccCCCCCcc----CCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccC
Q 047985          111 IPPEIINLSSLSYLNLSSAAFSGQ----IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTI  186 (930)
Q Consensus       111 ip~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l  186 (930)
                      +...+.....|++|+|++|.++..    +...+...++|+.|+++++......    ...+..+.               
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~----~~~~~~~~---------------   83 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK----DEIPEALR---------------   83 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG----GGSHHHHH---------------
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccc----cccchHHH---------------
Confidence            344566677788888887776532    2233455677777777766321100    00000000               


Q ss_pred             CCCCchhccCCCCCCEEEccCCCCCCC----CcccccCCCCCcEEEccCCCCCCchh-------------hhhcCCCCCC
Q 047985          187 SSPIPHNLTYLSSLTTLSLSGCDLRGR----IPSSLGNITRLIHLDLSFNKLSDELP-------------TFIGTLGSLK  249 (930)
Q Consensus       187 ~~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p-------------~~l~~l~~L~  249 (930)
                        .+...+..+++|++|+|++|.++..    +...+...++|++|++++|.+.....             ......+.|+
T Consensus        84 --~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~  161 (344)
T d2ca6a1          84 --LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR  161 (344)
T ss_dssp             --HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             --HHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccc
Confidence              0112233444555555555554432    22233445666666666665532111             1124567899


Q ss_pred             EEEccCCCCCCC----cchhhcCCCCCCEEEccCCCCCCC-----CCCCCCCCcCCcEEEccCCCCCCc----cCccccc
Q 047985          250 ELDLLQNNLSGE----LPNSIGNLASLEQVDLSLNRFLGK-----VPSSLGNLTQLHWLSLASNDFSGE----LPASFGN  316 (930)
Q Consensus       250 ~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~  316 (930)
                      .+.+++|.++..    +...+..++.|+.|++++|++...     +...+..+++|+.|+|++|.++..    +...+..
T Consensus       162 ~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~  241 (344)
T d2ca6a1         162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  241 (344)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             eeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc
Confidence            999999988743    344466788999999999998642     345677889999999999988643    3455677


Q ss_pred             ccccceeecccccccCCCcc----cccC--CCCCCEEEccCCCCCCCCchh---HHhhccccccEEEccCCcccc
Q 047985          317 LRSLRTLDVYECKFSGQIPS----SLSN--LTHLSFLDFSLNNFSGKMDLD---IFLVNHKLLYHLFLSTNRLSL  382 (930)
Q Consensus       317 l~~L~~L~L~~n~l~~~~p~----~l~~--l~~L~~L~Ls~n~l~~~~~~~---~~~~~~~~L~~L~Ls~n~l~~  382 (930)
                      +++|++|+|++|.+++....    .+..  .+.|++|++++|.++......   ....+.+.|+.|++++|++..
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            89999999999998754322    2332  467999999999876432111   111356788888988886643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.8e-13  Score=126.28  Aligned_cols=83  Identities=18%  Similarity=0.127  Sum_probs=35.7

Q ss_pred             hcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCcc-CcccccccccceeecccccccCCC---cccccCC
Q 047985          266 IGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGEL-PASFGNLRSLRTLDVYECKFSGQI---PSSLSNL  341 (930)
Q Consensus       266 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~---p~~l~~l  341 (930)
                      |..+++|++|++++|+++...+..+..+++|++|++++|++.... ...+..+++|++|++++|.++...   +..+..+
T Consensus        59 ~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~l  138 (162)
T d1a9na_          59 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV  138 (162)
T ss_dssp             CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC
T ss_pred             cccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHC
Confidence            334444444444444443322222333444444444444443211 123444555555555555544221   1234455


Q ss_pred             CCCCEEE
Q 047985          342 THLSFLD  348 (930)
Q Consensus       342 ~~L~~L~  348 (930)
                      ++|+.||
T Consensus       139 p~L~~LD  145 (162)
T d1a9na_         139 PQVRVLD  145 (162)
T ss_dssp             TTCSEET
T ss_pred             CCcCeeC
Confidence            6666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.8e-13  Score=125.47  Aligned_cols=128  Identities=18%  Similarity=0.106  Sum_probs=64.8

Q ss_pred             CCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCccccccccccee
Q 047985          244 TLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTL  323 (930)
Q Consensus       244 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  323 (930)
                      +..++++|+|++|+++ .++..+..+++|+.|+|++|+++..  +.|..+++|++|++++|+++...+..+..+++|++|
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            3344555555555554 2344444555555555555555432  235555666666666666654434444455666666


Q ss_pred             ecccccccCCCc-ccccCCCCCCEEEccCCCCCCCCch-hHHhhccccccEEE
Q 047985          324 DVYECKFSGQIP-SSLSNLTHLSFLDFSLNNFSGKMDL-DIFLVNHKLLYHLF  374 (930)
Q Consensus       324 ~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~L~~L~  374 (930)
                      ++++|++..... ..+..+++|++|++++|+++..... ...+..+++|+.||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666666553211 2355556666666666655432221 11224555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=5.2e-12  Score=114.05  Aligned_cols=101  Identities=25%  Similarity=0.314  Sum_probs=51.3

Q ss_pred             CEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCC
Q 047985           97 EWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL  176 (930)
Q Consensus        97 ~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L  176 (930)
                      |+|||++|+++.  ++ .++.+++|++|++++|.++ .+|..++.+++|++|++++|.+.        .++ .+.++++|
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~--------~l~-~~~~l~~L   67 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--------NVD-GVANLPRL   67 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC--------CCG-GGTTCSSC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc--------ccC-cccccccc
Confidence            456666666653  33 3566666666666666665 45555666666666666666431        111 13344444


Q ss_pred             CEEEcCCccCCCCC-chhccCCCCCCEEEccCCCC
Q 047985          177 KELVLGDVTISSPI-PHNLTYLSSLTTLSLSGCDL  210 (930)
Q Consensus       177 ~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l  210 (930)
                      ++|++++|.++... ...+..+++|++|++++|.+
T Consensus        68 ~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            44444444443322 12344444444444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=5e-12  Score=114.18  Aligned_cols=85  Identities=25%  Similarity=0.269  Sum_probs=33.2

Q ss_pred             cCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCcc-Ccccccccccc
Q 047985          243 GTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGEL-PASFGNLRSLR  321 (930)
Q Consensus       243 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~  321 (930)
                      ..+++|++|++++|.++ .+|..++.+++|+.|++++|++++. | .+..+++|++|++++|+++... ...+..+++|+
T Consensus        17 ~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCC
Confidence            33334444444444443 2333344444444444444444321 1 2344444444444444443221 12333444444


Q ss_pred             eeecccccc
Q 047985          322 TLDVYECKF  330 (930)
Q Consensus       322 ~L~L~~n~l  330 (930)
                      +|++++|++
T Consensus        94 ~L~l~~N~i  102 (124)
T d1dcea3          94 LLNLQGNSL  102 (124)
T ss_dssp             EEECTTSGG
T ss_pred             EEECCCCcC
Confidence            444444444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=9.8e-13  Score=129.75  Aligned_cols=42  Identities=21%  Similarity=0.325  Sum_probs=23.8

Q ss_pred             CchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCC
Q 047985          111 IPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNS  154 (930)
Q Consensus       111 ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  154 (930)
                      +|..+..+++|++|+|++|.++ .++ .+..+++|++|++++|.
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~   81 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNL   81 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEE
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccc
Confidence            4455566666666666666655 333 35555666666666553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.3e-10  Score=106.52  Aligned_cols=106  Identities=19%  Similarity=0.179  Sum_probs=73.0

Q ss_pred             CCEEEccCCCCCCCCcccccCCCCCcEEEccCC-CCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 047985          200 LTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN-KLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS  278 (930)
Q Consensus       200 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  278 (930)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+++...|.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            445666666555 34556666777777777655 4666666677777778888888787776666777778888888888


Q ss_pred             CCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985          279 LNRFLGKVPSSLGNLTQLHWLSLASNDFS  307 (930)
Q Consensus       279 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  307 (930)
                      +|+++...+..|..+ +|+.|+|++|.+.
T Consensus        89 ~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccc-cccccccCCCccc
Confidence            888775444445443 5888888888775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.05  E-value=3.5e-12  Score=125.68  Aligned_cols=133  Identities=23%  Similarity=0.303  Sum_probs=102.5

Q ss_pred             CCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccc
Q 047985          476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSL  555 (930)
Q Consensus       476 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  555 (930)
                      .+|..+..+ ++|++|+|++|+|+. ++ .+..+++ |++|+|++|.++ .+|......+.|++|++++|+++..  ..+
T Consensus        39 ~l~~sl~~L-~~L~~L~Ls~n~I~~-i~-~l~~l~~-L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~  111 (198)
T d1m9la_          39 KMDATLSTL-KACKHLALSTNNIEK-IS-SLSGMEN-LRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGI  111 (198)
T ss_dssp             CCHHHHHHT-TTCCEEECSEEEESC-CC-CHHHHTT-CCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHH
T ss_pred             hhhhHHhcc-cccceeECcccCCCC-cc-cccCCcc-ccChhhcccccc-ccccccccccccccccccccccccc--ccc
Confidence            566778777 899999999999985 44 4788885 999999999987 5565555556899999999999854  357


Q ss_pred             cCCCCCcEecccCccccccCc-ccccCCCCCcEEEccCCcccccCCCCCc--------cCCCCCceEEE
Q 047985          556 ANCSNLEFLDLGDNQIRDIFP-SWLGTLPDLNVLILKSNKFHGLIREPKT--------DCGFPKLRIID  615 (930)
Q Consensus       556 ~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~--------~~~l~~L~~Ld  615 (930)
                      ..+++|+.|++++|+|+.... ..+..+++|+.|+|++|++....+....        ...+|+|+.||
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            888999999999999987633 5688899999999999988766544321        23456666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.8e-10  Score=104.78  Aligned_cols=109  Identities=20%  Similarity=0.110  Sum_probs=81.6

Q ss_pred             CceeecCCCccccccCcccCCCCCccEEEccCc-cccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEcc
Q 047985          513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDN-LLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILK  591 (930)
Q Consensus       513 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  591 (930)
                      .+.++.+++.+. .+|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+.+.+..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            455666666665 45666777777888888655 4776667778888888888888888888888888888888888888


Q ss_pred             CCcccccCCCCCccCCCCCceEEECCCCcCcccC
Q 047985          592 SNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKL  625 (930)
Q Consensus       592 ~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i  625 (930)
                      +|+++...+..+   ....|+.|+|++|++....
T Consensus        89 ~N~l~~l~~~~~---~~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          89 FNALESLSWKTV---QGLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             SSCCSCCCSTTT---CSCCCCEEECCSSCCCCCG
T ss_pred             CCCCcccChhhh---ccccccccccCCCcccCCc
Confidence            888886654443   2346889999999886543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1e-07  Score=89.69  Aligned_cols=65  Identities=22%  Similarity=0.142  Sum_probs=30.1

Q ss_pred             CCCCccEEEccCccccccC--CccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccc
Q 047985          533 KGNILKVIDLSDNLLQGRI--PRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHG  597 (930)
Q Consensus       533 ~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  597 (930)
                      .++.|++|+|++|+|+..-  +..+..+++|+.|||++|+|+...+-.+.....|+.|++++|++..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3445555555555554321  2334445555555555555554433222233344445555554443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2e-06  Score=80.56  Aligned_cols=79  Identities=24%  Similarity=0.196  Sum_probs=39.4

Q ss_pred             ccccEEEccccccccc--CchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCcc-------ccC
Q 047985          680 DILTAVILSSNRFDGE--IPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQ-------LVE  750 (930)
Q Consensus       680 ~~L~~L~Ls~N~l~g~--ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~-------l~~  750 (930)
                      +.|+.|+||+|+|+..  ++..+..+++|+.|||++|.++...+-.......|+.|+|++|+++......       +..
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            3456666666666542  2233455566666666666665332222223334566666666665443321       344


Q ss_pred             CCCCCeee
Q 047985          751 LTFLEFFN  758 (930)
Q Consensus       751 L~~L~~L~  758 (930)
                      +++|++||
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            55555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.52  E-value=4.5e-05  Score=71.34  Aligned_cols=37  Identities=22%  Similarity=0.086  Sum_probs=15.5

Q ss_pred             CCCCcEEEccCCCCCCc----hhhhhcCCCCCCEEEccCCC
Q 047985          221 ITRLIHLDLSFNKLSDE----LPTFIGTLGSLKELDLLQNN  257 (930)
Q Consensus       221 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~  257 (930)
                      .+.|++|++++|.++..    +-..+...++|++|++++|.
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            34444444444444432    11233334444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.50  E-value=3.8e-05  Score=71.90  Aligned_cols=39  Identities=10%  Similarity=-0.035  Sum_probs=17.3

Q ss_pred             ccCCCCCcEEEccCCCCCCc-------hhhhhcCCCCCCEEEccCC
Q 047985          218 LGNITRLIHLDLSFNKLSDE-------LPTFIGTLGSLKELDLLQN  256 (930)
Q Consensus       218 l~~l~~L~~L~Ls~n~l~~~-------~p~~l~~l~~L~~L~L~~n  256 (930)
                      +...+.|++|++++|.+...       +...+...++|+.|+++.+
T Consensus        96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            33444555555555433221       2233344455555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.68  E-value=0.00038  Score=64.73  Aligned_cols=15  Identities=27%  Similarity=0.226  Sum_probs=6.6

Q ss_pred             CCCCcEEEccCCCCC
Q 047985          221 ITRLIHLDLSFNKLS  235 (930)
Q Consensus       221 l~~L~~L~Ls~n~l~  235 (930)
                      .+.++.+++++|.++
T Consensus        73 ~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          73 NNTLKSLNVESNFIS   87 (166)
T ss_dssp             CSSCCEEECCSSCCC
T ss_pred             cccchhhhhcccccc
Confidence            344444444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.61  E-value=0.00026  Score=65.88  Aligned_cols=39  Identities=10%  Similarity=0.059  Sum_probs=19.5

Q ss_pred             cCCCCCCEEEccC-CCCCcc----CCccccCCCCCcEEEccCCC
Q 047985          116 INLSSLSYLNLSS-AAFSGQ----IPSEILELSKLAYLDLSHNS  154 (930)
Q Consensus       116 ~~l~~L~~L~Ls~-n~l~~~----~p~~l~~l~~L~~L~Ls~n~  154 (930)
                      .+.+.|++|+|++ +.++..    +-..+...++|++|++++|.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~   57 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR   57 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc
Confidence            3456666666665 334422    11223345555555555553