Citrus Sinensis ID: 047998

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
MVSALRLPSLHLTNLFSSSPCISRRSSAILRRHHRLRPPPTLTAGFSAQSAASSPPETDDKVVEIEKNRASQDRGNRERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFAKSY
ccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccccEEEEcccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccEEEEEEEEcccccccccccccccccccccccEEEEcccccEEEEEEEccccHHHHHEEEEEEEcccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHccccEEEEEccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccHHHHHHHHHcccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEcc
cccccccccHHHHHcccccccEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccEEEEEccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHcccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccHccEHHHHHcccccEEEccccccccccHHHHEEEEEEcccccEEEEEEccccHHHHHHHHHEEEcccccccEcccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccEEcHEcEccccEEEEEcccHHHcccEEEEEEccccccEEEEcEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccHHHHHHHHHcccEEEEcccccHHHHHHHHHHcccEEEEEcccccccccEEEEccccccEEEEEEEcc
mvsalrlpslhltnlfssspcisrrssailrrhhrlrppptltagfsaqsaassppetddkVVEIEKNrasqdrgnrervitprsqdfnAWYLDvisnaeladygpvrgtmvirPYGYAIWEAIQDYLNVKFKetghsnmyfpqfipysfiekeashvegfspeLALVTIgggkeleeklvvrptseTIVNHMFTQWIHSYRDLPLLVNQWANVTRwemrtkpfvRTLEFLWqeghtahatpeEAEKEAMQMIDIYTKFayehtaipviagrkskvetFAGASRTYTIEAMMGdkralqagtshnlgqnfslafgtqftdengqrqhvwQTSWAISTRFVGGIimthgddtglmlppriapiQVVIVPIwkkadektGVLSAALSAKEVLQKsgirvklddsdqrtpgwkfnfwemkgiplrieigprdvssgsvvisrrdvpgkqgkvfgismePSILEAYVKDKLDEIQSALLERAtsfrdsnivdvsSYEELKEAISmgkwargpwsasdadelkvkeetgatircfpfeqpqgnktcfmtgnPAQEVALFAKSY
mvsalrlpslhltnlfssspcisRRSSAILRRHHRlrppptltagfsaqsaassppetddkvveieknrasqdrgnrervitprsqdfnaWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIpviagrkskvetFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKevlqksgirvklddsdqrtpgwkfnfweMKGIPLRieigprdvssgsvvisrrdvpgkqgkvfgisMEPSILEAYVKDKLDEIQSALLeratsfrdsnivdvSSYEELKEAismgkwargpwsaSDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFAKSY
MVSALRLPSLHLTNLFssspcisrrssAIlrrhhrlrppptltAGFSAQSAASSPPETDDKVVEIEKNRASQDRGNRERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFAKSY
*************************************************************************************QDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTA**********AMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLD***QRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAISMGKWARGPW*************TGATIRCFPFEQPQGNKTCFMT**************
********SLHLTNLFSSSPCISRRSSAILRR*****************************************************QDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFAKSY
MVSALRLPSLHLTNLFSSSPCISRRSSAILRRHHRLRPPPTLTAG****************VVEIEK**********ERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFAKSY
***ALRLPSLHLTNLFSSSPCISRRSSAILRRHHRLRPPPTLT******************************RGNRERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFAKSY
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVSALRLPSLHLTNLFSSSPCISRRSSAILRRHHRLRPPPTLTAGFSAQSAASSPPETDDKVVEIEKNRASQDRGNRERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFAKSY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query558 2.2.26 [Sep-21-2011]
B3QYP1481 Proline--tRNA ligase OS=C yes no 0.842 0.977 0.536 1e-154
A7NKX0480 Proline--tRNA ligase OS=R yes no 0.847 0.985 0.533 1e-153
A5UU62480 Proline--tRNA ligase OS=R yes no 0.840 0.977 0.528 1e-153
B3EP23481 Proline--tRNA ligase OS=C yes no 0.840 0.975 0.532 1e-150
Q1CXV1483 Proline--tRNA ligase OS=M yes no 0.844 0.975 0.531 1e-150
B3QPX3481 Proline--tRNA ligase OS=C yes no 0.842 0.977 0.531 1e-149
B3EE36481 Proline--tRNA ligase OS=C yes no 0.838 0.972 0.540 1e-149
A1BHL6481 Proline--tRNA ligase OS=C yes no 0.840 0.975 0.528 1e-148
Q72GF9477 Proline--tRNA ligase OS=T yes no 0.847 0.991 0.549 1e-148
Q5SM28477 Proline--tRNA ligase OS=T yes no 0.847 0.991 0.549 1e-148
>sp|B3QYP1|SYP_CHLT3 Proline--tRNA ligase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=proS PE=3 SV=1 Back     alignment and function desciption
 Score =  544 bits (1401), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 260/485 (53%), Positives = 345/485 (71%), Gaps = 15/485 (3%)

Query: 81  ITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNM 140
           IT R+QD++ WY+D++  A+LADY  VRG MVIRP GYAIWE +Q  L+  FKETGH N 
Sbjct: 5   ITSRAQDYSQWYIDIVRFAKLADYSDVRGCMVIRPNGYAIWEKMQAALDRMFKETGHVNA 64

Query: 141 YFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHS 200
           YFP FIP SFI+KEA H+EGF+PE A+VT GGG+EL+EKL VRPTSETI+   + +WI S
Sbjct: 65  YFPLFIPESFIQKEAEHIEGFAPECAVVTHGGGEELQEKLYVRPTSETIIWSSYKKWIQS 124

Query: 201 YRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFA 260
           YRDLP+L+NQWANV RWEMRT+ F+RT EFLWQEGHTAHAT  EA++E ++MI++Y  FA
Sbjct: 125 YRDLPILINQWANVVRWEMRTRLFLRTTEFLWQEGHTAHATETEAKEEVLRMIEVYRHFA 184

Query: 261 YEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTD 320
            E+ AIPVI G K++ E FAGA  T+ IEAMM D +ALQAGTSH+LGQNF+ AF  +F  
Sbjct: 185 EEYMAIPVIVGMKTESEKFAGAHETFCIEAMMQDGKALQAGTSHHLGQNFAKAFDCKFQT 244

Query: 321 ENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVL 380
           ++G  ++VW +SW +STR +G +IM H DD GL+LPP++A  Q VIVPI K   +K  VL
Sbjct: 245 KDGSLEYVWASSWGVSTRLIGALIMAHSDDKGLVLPPKLASRQAVIVPILK--GDKAAVL 302

Query: 381 SAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRR 440
             A+  +++L+ +G++V LDDS+Q TPGWKF  +E++GIP+RIE+GPRDV++G  V++RR
Sbjct: 303 EKAVELEKMLKAAGVQVFLDDSEQNTPGWKFAEYELQGIPVRIELGPRDVAAGKCVVARR 362

Query: 441 DVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAIS 500
           D   K+      +    I     KD LD IQ+ L ERA  FR+     V++YEELK  + 
Sbjct: 363 DTSEKETLEIDTAFPQKI-----KDLLDSIQTGLFERALRFREEKTKVVTTYEELKAQVE 417

Query: 501 MGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNK-------TCFMTGNPAQEVAL 553
           +G +A   W  +   E K+KEET ATIRC P  +    K        C  +GNP++++ +
Sbjct: 418 VG-FAVAHWDGTPETEAKIKEETKATIRCLPVSKDFATKYGINTEGKCVFSGNPSKQMVV 476

Query: 554 FAKSY 558
           FAK+Y
Sbjct: 477 FAKAY 481
Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5
>sp|A7NKX0|SYP_ROSCS Proline--tRNA ligase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|A5UU62|SYP_ROSS1 Proline--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|B3EP23|SYP_CHLPB Proline--tRNA ligase OS=Chlorobium phaeobacteroides (strain BS1) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|Q1CXV1|SYP_MYXXD Proline--tRNA ligase OS=Myxococcus xanthus (strain DK 1622) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|B3QPX3|SYP_CHLP8 Proline--tRNA ligase OS=Chlorobaculum parvum (strain NCIB 8327) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|B3EE36|SYP_CHLL2 Proline--tRNA ligase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|A1BHL6|SYP_CHLPD Proline--tRNA ligase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|Q72GF9|SYP_THET2 Proline--tRNA ligase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|Q5SM28|SYP_THET8 Proline--tRNA ligase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=proS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query558
255545202548 prolyl-tRNA synthetase, putative [Ricinu 0.980 0.998 0.853 0.0
225464551547 PREDICTED: prolyl-tRNA synthetase-like [ 0.946 0.965 0.846 0.0
356559756546 PREDICTED: prolyl-tRNA synthetase-like [ 0.971 0.992 0.836 0.0
357465365580 Prolyl-tRNA synthetase [Medicago truncat 0.967 0.931 0.780 0.0
356530833546 PREDICTED: prolyl-tRNA synthetase-like [ 0.971 0.992 0.827 0.0
147776717599 hypothetical protein VITISV_029502 [Viti 0.944 0.879 0.769 0.0
449464478555 PREDICTED: proline--tRNA ligase-like [Cu 0.985 0.990 0.793 0.0
449497643555 PREDICTED: proline--tRNA ligase-like [Cu 0.985 0.990 0.790 0.0
15237183543 prolyl-tRNA synthetase [Arabidopsis thal 0.967 0.994 0.811 0.0
297792591542 hypothetical protein ARALYDRAFT_495320 [ 0.971 1.0 0.804 0.0
>gi|255545202|ref|XP_002513662.1| prolyl-tRNA synthetase, putative [Ricinus communis] gi|223547570|gb|EEF49065.1| prolyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/558 (85%), Positives = 508/558 (91%), Gaps = 11/558 (1%)

Query: 1   MVSALRLPSLHLTNLFSSSPCISRRSSAILRRHHRLRPPPTLTAGFSAQSAASSPPETDD 60
           +V   RLPSL  T+ F SSP I R S A  RR H      + ++ FS QSAASSPPET+D
Sbjct: 2   VVCLTRLPSL--TSAFFSSPSI-RHSPAFPRRRHNYVC--SASSSFSIQSAASSPPETED 56

Query: 61  KVVEIEKNRASQDRGNRERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAI 120
           +V  +      + R N++R +TPRS+DFNAWYLDVI+NAELADYGPVRGTMVIRPYGYAI
Sbjct: 57  RVANL------KSRINQDRAVTPRSEDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAI 110

Query: 121 WEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 180
           WEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL
Sbjct: 111 WEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 170

Query: 181 VVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA 240
           VVRPTSETIVNHMFTQWIHSYRDLPL+VNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA
Sbjct: 171 VVRPTSETIVNHMFTQWIHSYRDLPLMVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA 230

Query: 241 TPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQA 300
           TPEEAEKEA+QMID+YTKFAYE  AIPVIAGRKSKVETFAGA RTYTIEAMMGD++ALQA
Sbjct: 231 TPEEAEKEALQMIDVYTKFAYEQAAIPVIAGRKSKVETFAGAVRTYTIEAMMGDRKALQA 290

Query: 301 GTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIA 360
           GTSHNLGQNFS AFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPP+IA
Sbjct: 291 GTSHNLGQNFSRAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPKIA 350

Query: 361 PIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIP 420
           PIQVVIVPIWKK  EK GVL+AA S +EVLQ SG++VKLDDSDQRTPGWKFNFWEMKG+P
Sbjct: 351 PIQVVIVPIWKKDTEKAGVLNAASSVREVLQSSGLKVKLDDSDQRTPGWKFNFWEMKGVP 410

Query: 421 LRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATS 480
           LRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQS+LL RA S
Sbjct: 411 LRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSSLLGRAMS 470

Query: 481 FRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKT 540
           FR+S+IVDVSSY ELKEAIS+GKWARGPWSASDADEL+VKEETGATIRCFPFEQPQG KT
Sbjct: 471 FRESHIVDVSSYGELKEAISLGKWARGPWSASDADELRVKEETGATIRCFPFEQPQGTKT 530

Query: 541 CFMTGNPAQEVALFAKSY 558
           C MTG PA+EVA+FAKSY
Sbjct: 531 CLMTGKPAEEVAIFAKSY 548

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225464551|ref|XP_002272741.1| PREDICTED: prolyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559756|ref|XP_003548163.1| PREDICTED: prolyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|357465365|ref|XP_003602964.1| Prolyl-tRNA synthetase [Medicago truncatula] gi|355492012|gb|AES73215.1| Prolyl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356530833|ref|XP_003533984.1| PREDICTED: prolyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|147776717|emb|CAN76962.1| hypothetical protein VITISV_029502 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449464478|ref|XP_004149956.1| PREDICTED: proline--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449497643|ref|XP_004160459.1| PREDICTED: proline--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15237183|ref|NP_200065.1| prolyl-tRNA synthetase [Arabidopsis thaliana] gi|10177035|dbj|BAB10183.1| prolyl tRNA synthetase [Arabidopsis thaliana] gi|34365755|gb|AAQ65189.1| At5g52520 [Arabidopsis thaliana] gi|51970984|dbj|BAD44184.1| prolyl tRNA synthetase [Arabidopsis thaliana] gi|332008841|gb|AED96224.1| prolyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297792591|ref|XP_002864180.1| hypothetical protein ARALYDRAFT_495320 [Arabidopsis lyrata subsp. lyrata] gi|297310015|gb|EFH40439.1| hypothetical protein ARALYDRAFT_495320 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query558
TAIR|locus:2184630543 OVA6 "OVULE ABORTION 6" [Arabi 0.906 0.931 0.842 5.8e-240
TIGR_CMR|BA_0396508 BA_0396 "prolyl-tRNA synthetas 0.806 0.885 0.497 2.8e-121
GENEDB_PFALCIPARUM|PFL0670c746 PFL0670c "Bi-functional aminoa 0.872 0.652 0.413 2.3e-103
UNIPROTKB|Q8I5R7746 proRS "Proline--tRNA ligase" [ 0.872 0.652 0.413 2.3e-103
TAIR|locus:2098053530 AT3G62120 [Arabidopsis thalian 0.838 0.883 0.409 5.8e-103
DICTYBASE|DDB_G0284197548 proS "prolyl-tRNA synthetase" 0.829 0.844 0.417 1.7e-100
WB|WBGene00004189581 pars-1 [Caenorhabditis elegans 0.905 0.869 0.376 4.4e-100
UNIPROTKB|F1P1791601 EPRS "Uncharacterized protein" 0.872 0.304 0.386 9e-95
ZFIN|ZDB-GENE-030131-6381683 eprs "glutamyl-prolyl-tRNA syn 0.827 0.274 0.403 5e-94
UNIPROTKB|P078141512 EPRS "Bifunctional glutamate/p 0.836 0.308 0.397 2.1e-93
TAIR|locus:2184630 OVA6 "OVULE ABORTION 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2313 (819.3 bits), Expect = 5.8e-240, P = 5.8e-240
 Identities = 434/515 (84%), Positives = 473/515 (91%)

Query:    44 AGFSAQSAASSPPETDDKVVEIEKNRASQDRGNRERVITPRSQDFNAWYLDVISNAELAD 103
             +GF+   + ++ PET  K  E+++ R+       +R +TPRSQDFNAWYLDVI++AELAD
Sbjct:    38 SGFATAPSGTASPET--KSSEVDRLRS-------DRAVTPRSQDFNAWYLDVIASAELAD 88

Query:   104 YGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSP 163
             YGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSP
Sbjct:    89 YGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSP 148

Query:   164 ELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKP 223
             ELALVT+GGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPL++NQWANVTRWEMRTKP
Sbjct:   149 ELALVTVGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTKP 208

Query:   224 FVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGAS 283
             F+RTLEFLWQEGHTAHATPEEAEKEA QMI+IYT+FA+E TAIPVI GRKSK+ETFAGA 
Sbjct:   209 FIRTLEFLWQEGHTAHATPEEAEKEAKQMIEIYTRFAFEQTAIPVIPGRKSKLETFAGAD 268

Query:   284 RTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAISTRFVGGI 343
              TYTIEAMMGD++ALQAGTSHNLGQNFS AFGTQF DENG+RQHVWQTSWA+STRFVGGI
Sbjct:   269 ITYTIEAMMGDRKALQAGTSHNLGQNFSRAFGTQFADENGERQHVWQTSWAVSTRFVGGI 328

Query:   344 IMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSD 403
             IMTHGDDTGLMLPP+IAPIQVVIVPIWKK  EKTGVLSAA S KE LQ +G+RVKLDD+D
Sbjct:   329 IMTHGDDTGLMLPPKIAPIQVVIVPIWKKDTEKTGVLSAASSVKEALQTAGVRVKLDDTD 388

Query:   404 QRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYV 463
             QRTPGWKFNFWEMKGIPLRIEIGPRDVSS SVV+SRRDVPGK GKVFGISMEPS L AYV
Sbjct:   389 QRTPGWKFNFWEMKGIPLRIEIGPRDVSSNSVVVSRRDVPGKAGKVFGISMEPSTLVAYV 448

Query:   464 KDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEET 523
             K+KLDEIQ++LLE+A SFRDSNIVDV+SY ELK+AIS GKWARGPWSASDADE +VKEET
Sbjct:   449 KEKLDEIQTSLLEKALSFRDSNIVDVNSYAELKDAISSGKWARGPWSASDADEQRVKEET 508

Query:   524 GATIRCFPFEQPQGNKTCFMTGNPAQEVALFAKSY 558
             GATIRCFPFEQ QG KTC MTGNPA+EVA+FAKSY
Sbjct:   509 GATIRCFPFEQTQGTKTCLMTGNPAEEVAIFAKSY 543
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004827 "proline-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006433 "prolyl-tRNA aminoacylation" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0048481 "ovule development" evidence=RCA;IMP
GO:0009553 "embryo sac development" evidence=IMP
GO:0010109 "regulation of photosynthesis" evidence=IMP
GO:0048316 "seed development" evidence=IMP
GO:0009658 "chloroplast organization" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
TIGR_CMR|BA_0396 BA_0396 "prolyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFL0670c PFL0670c "Bi-functional aminoacyl-tRNA synthetase, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I5R7 proRS "Proline--tRNA ligase" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
TAIR|locus:2098053 AT3G62120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284197 proS "prolyl-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00004189 pars-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1P179 EPRS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-638 eprs "glutamyl-prolyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P07814 EPRS "Bifunctional glutamate/proline--tRNA ligase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B6YQ92SYP_AZOPC6, ., 1, ., 1, ., 1, 50.46540.84580.9574yesno
A5I768SYP_CLOBH6, ., 1, ., 1, ., 1, 50.48640.83690.9769yesno
Q81Z76SYP2_BACAN6, ., 1, ., 1, ., 1, 50.49250.81540.8956yesno
Q63GI2SYP2_BACCZ6, ., 1, ., 1, ., 1, 50.48640.84050.9852yesno
B3EE36SYP_CHLL26, ., 1, ., 1, ., 1, 50.54000.83870.9729yesno
A9W9Q2SYP_CHLAA6, ., 1, ., 1, ., 1, 50.53630.84940.9875yesno
B1L224SYP_CLOBM6, ., 1, ., 1, ., 1, 50.48850.83690.9769yesno
A4SFS0SYP_PROVI6, ., 1, ., 1, ., 1, 50.51950.84220.9771yesno
Q6HNZ7SYP2_BACHK6, ., 1, ., 1, ., 1, 50.48850.84050.9852yesno
B7J1X2SYP_BORBZ6, ., 1, ., 1, ., 1, 50.48770.84940.9713yesno
B1IFI2SYP_CLOBK6, ., 1, ., 1, ., 1, 50.48850.83690.9769yesno
C1FM10SYP_CLOBJ6, ., 1, ., 1, ., 1, 50.48850.83690.9769yesno
B8I5R4SYP_CLOCE6, ., 1, ., 1, ., 1, 50.51770.83690.9769yesno
A7FYU0SYP_CLOB16, ., 1, ., 1, ., 1, 50.48640.83690.9769yesno
A5UU62SYP_ROSS16, ., 1, ., 1, ., 1, 50.52890.84050.9770yesno
Q8A988SYP_BACTN6, ., 1, ., 1, ., 1, 50.48380.84580.9496yesno
B2A5T8SYP_NATTJ6, ., 1, ., 1, ., 1, 50.50200.85300.9855yesno
A5FA31SYP_FLAJ16, ., 1, ., 1, ., 1, 50.48280.84050.9532yesno
Q72GF9SYP_THET26, ., 1, ., 1, ., 1, 50.54950.84760.9916yesno
A0R9A0SYP2_BACAH6, ., 1, ., 1, ., 1, 50.48640.84050.9852yesno
Q3B2T0SYP_PELLD6, ., 1, ., 1, ., 1, 50.52980.84220.9771yesno
A0M4Z3SYP_GRAFK6, ., 1, ., 1, ., 1, 50.46760.84580.9593yesno
Q81IE9SYP2_BACCR6, ., 1, ., 1, ., 1, 50.48850.84050.9852yesno
Q5SM28SYP_THET86, ., 1, ., 1, ., 1, 50.54950.84760.9916yesno
Q9L4Q8SYP_CLOSD6, ., 1, ., 1, ., 1, 50.52400.84050.9750yesno
B9LC55SYP_CHLSY6, ., 1, ., 1, ., 1, 50.53630.84940.9875yesno
A1BHL6SYP_CHLPD6, ., 1, ., 1, ., 1, 50.52880.84050.9750yesno
B4S9D5SYP_PROA26, ., 1, ., 1, ., 1, 50.51840.83690.9708yesno
B2RJG1SYP_PORG36, ., 1, ., 1, ., 1, 50.48780.84580.9574yesno
Q73E50SYP2_BACC16, ., 1, ., 1, ., 1, 50.48440.84050.9852yesno
A8MLB3SYP_ALKOO6, ., 1, ., 1, ., 1, 50.52600.83870.975yesno
Q1AX25SYP_RUBXD6, ., 1, ., 1, ., 1, 50.50520.83870.9831yesno
B3EP23SYP_CHLPB6, ., 1, ., 1, ., 1, 50.53290.84050.9750yesno
Q1CXV1SYP_MYXXD6, ., 1, ., 1, ., 1, 50.53120.84400.9751yesno
O51363SYP_BORBU6, ., 1, ., 1, ., 1, 50.48560.84940.9713yesno
A0Q2I3SYP_CLONN6, ., 1, ., 1, ., 1, 50.51140.83690.9769yesno
B3ER64SYP_AMOA56, ., 1, ., 1, ., 1, 50.47950.84050.9551yesno
Q3ASP3SYP_CHLCH6, ., 1, ., 1, ., 1, 50.51540.84220.9771yesno
C3KUV8SYP_CLOB66, ., 1, ., 1, ., 1, 50.48850.83690.9769yesno
B3QPX3SYP_CHLP86, ., 1, ., 1, ., 1, 50.53190.84220.9771yesno
A6LAP3SYP_PARD86, ., 1, ., 1, ., 1, 50.49790.84580.9574yesno
A7GIT0SYP_CLOBL6, ., 1, ., 1, ., 1, 50.48850.83690.9769yesno
Q18CD7SYP2_CLOD66, ., 1, ., 1, ., 1, 50.49680.84050.9750yesno
B3QYP1SYP_CHLT36, ., 1, ., 1, ., 1, 50.53600.84220.9771yesno
Q8KCD1SYP_CHLTE6, ., 1, ., 1, ., 1, 50.51950.84220.9771yesno
B4SG51SYP_PELPB6, ., 1, ., 1, ., 1, 50.51540.84220.9771yesno
A6L5I2SYP_BACV86, ., 1, ., 1, ., 1, 50.48080.84580.9516yesno
Q7MVS7SYP_PORGI6, ., 1, ., 1, ., 1, 50.48780.84580.9574yesno
A7NKX0SYP_ROSCS6, ., 1, ., 1, ., 1, 50.53330.84760.9854yesno
B8G3V5SYP_CHLAD6, ., 1, ., 1, ., 1, 50.53220.84940.9875yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.150.914
3rd Layer6.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
PRK08661477 PRK08661, PRK08661, prolyl-tRNA synthetase; Provis 0.0
TIGR00408472 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, fam 0.0
cd00778261 cd00778, ProRS_core_arch_euk, Prolyl-tRNA syntheta 1e-164
COG0442500 COG0442, ProS, Prolyl-tRNA synthetase [Translation 1e-147
cd00772264 cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS 1e-98
cd00862202 cd00862, ProRS_anticodon_zinc, ProRS Prolyl-antico 1e-87
cd00670235 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro 4e-36
smart0094667 smart00946, ProRS-C_1, Prolyl-tRNA synthetase, C-t 1e-26
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 3e-26
pfam0918068 pfam09180, ProRS-C_1, Prolyl-tRNA synthetase, C-te 8e-25
PRK09194565 PRK09194, PRK09194, prolyl-tRNA synthetase; Provis 9e-22
pfam0312993 pfam03129, HGTP_anticodon, Anticodon binding domai 7e-19
COG0441589 COG0441, ThrS, Threonyl-tRNA synthetase [Translati 1e-18
TIGR00409568 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, fa 2e-16
PRK12325439 PRK12325, PRK12325, prolyl-tRNA synthetase; Provis 9e-16
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 2e-15
cd0073894 cd00738, HGTP_anticodon, HGTP anticodon binding do 1e-12
TIGR00418563 TIGR00418, thrS, threonyl-tRNA synthetase 8e-12
cd00779255 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase ( 6e-11
PRK12444639 PRK12444, PRK12444, threonyl-tRNA synthetase; Revi 3e-09
cd0086091 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon 5e-09
cd0086194 cd00861, ProRS_anticodon_short, ProRS Prolyl-antic 4e-08
PRK12305575 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed 1e-07
PRK14799545 PRK14799, thrS, threonyl-tRNA synthetase; Provisio 3e-07
PRK00413638 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed 4e-07
PRK03991613 PRK03991, PRK03991, threonyl-tRNA synthetase; Vali 4e-06
TIGR00409568 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, fa 6e-06
cd00858121 cd00858, GlyRS_anticodon, GlyRS Glycyl-anticodon b 6e-05
TIGR00389551 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, d 9e-05
COG0423558 COG0423, GRS1, Glycyl-tRNA synthetase (class II) [ 3e-04
PRK12325439 PRK12325, PRK12325, prolyl-tRNA synthetase; Provis 4e-04
PRK14938387 PRK14938, PRK14938, Ser-tRNA(Thr) hydrolase; Provi 5e-04
>gnl|CDD|236327 PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional Back     alignment and domain information 
 Score =  795 bits (2057), Expect = 0.0
 Identities = 283/483 (58%), Positives = 355/483 (73%), Gaps = 9/483 (1%)

Query: 77  RERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETG 136
               ITPRS+DF+ WY DV+  AELADY PV+G MVI+PYGYAIWE IQ  L+  FKETG
Sbjct: 3   MVEKITPRSEDFSEWYNDVVKKAELADYSPVKGCMVIKPYGYAIWENIQKILDKLFKETG 62

Query: 137 HSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196
           H N+YFP  IP S +EKE  HVEGF+PE+A VT GGG++LEEKL +RPTSETI+  M+ +
Sbjct: 63  HENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKK 122

Query: 197 WIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIY 256
           WI SYRDLPLL NQW NV RWE +T+PF+RT EFLWQEGHTAHAT EEAE+E ++M++IY
Sbjct: 123 WIQSYRDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIY 182

Query: 257 TKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGT 316
            +F  ++ AIPVI G+K++ E FAGA  TYTIEAMM D +ALQAGTSH LGQNF+ AF  
Sbjct: 183 KEFFEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPDGKALQAGTSHYLGQNFAKAFDI 242

Query: 317 QFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEK 376
           +F D++G+ ++V QTSW +STR +G +IMTHGDD GL+LPP+IAPIQVVIVPI+KK ++K
Sbjct: 243 KFQDKDGKLEYVHQTSWGVSTRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKK 302

Query: 377 TGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVV 436
             VL  A    E L+K+GIRVKLDD   +TPGWKFN WE+KG+PLRIEIGPRD+ + +VV
Sbjct: 303 EEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVV 362

Query: 437 ISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELK 496
           + RRD   K       ++    L   V + L+EIQ  L E+A  F + N V+V + EE K
Sbjct: 363 LVRRDTLEK------ETVPLDELVEKVPELLEEIQENLYEKAKEFLEENTVEVDTLEEFK 416

Query: 497 EAISM-GKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFA 555
           EAI   G + + PW   +  E K+KEETGATIRC P EQ +G   C + G PA++  LFA
Sbjct: 417 EAIEEKGGFVKAPWCGDEECEEKIKEETGATIRCIPLEQEKG--KCIVCGKPAKKRVLFA 474

Query: 556 KSY 558
           K+Y
Sbjct: 475 KAY 477

Length = 477
>gnl|CDD|232961 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I Back     alignment and domain information
>gnl|CDD|238401 cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|223519 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238395 cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|238439 cd00862, ProRS_anticodon_zinc, ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea Back     alignment and domain information
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|198014 smart00946, ProRS-C_1, Prolyl-tRNA synthetase, C-terminal Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|220134 pfam09180, ProRS-C_1, Prolyl-tRNA synthetase, C-terminal Back     alignment and domain information
>gnl|CDD|236405 PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|202547 pfam03129, HGTP_anticodon, Anticodon binding domain Back     alignment and domain information
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232962 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II Back     alignment and domain information
>gnl|CDD|237059 PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|238379 cd00738, HGTP_anticodon, HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238402 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|238437 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|238438 cd00861, ProRS_anticodon_short, ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria Back     alignment and domain information
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|184826 PRK14799, thrS, threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|235190 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|232962 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II Back     alignment and domain information
>gnl|CDD|238435 cd00858, GlyRS_anticodon, GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|232951 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>gnl|CDD|223500 COG0423, GRS1, Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|237059 PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|184902 PRK14938, PRK14938, Ser-tRNA(Thr) hydrolase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 558
KOG4163551 consensus Prolyl-tRNA synthetase [Translation, rib 100.0
PRK08661477 prolyl-tRNA synthetase; Provisional 100.0
TIGR00408472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 100.0
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 100.0
PRK12325439 prolyl-tRNA synthetase; Provisional 100.0
TIGR00409568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 100.0
PRK09194565 prolyl-tRNA synthetase; Provisional 100.0
PRK03991613 threonyl-tRNA synthetase; Validated 100.0
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 100.0
PLN02837614 threonine-tRNA ligase 100.0
PRK12444639 threonyl-tRNA synthetase; Reviewed 100.0
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 100.0
PLN02908686 threonyl-tRNA synthetase 100.0
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 100.0
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 100.0
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 100.0
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 100.0
PRK04173456 glycyl-tRNA synthetase; Provisional 100.0
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 100.0
cd00862202 ProRS_anticodon_zinc ProRS Prolyl-anticodon bindin 100.0
KOG2324457 consensus Prolyl-tRNA synthetase [Translation, rib 100.0
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 100.0
KOG1637560 consensus Threonyl-tRNA synthetase [Translation, r 100.0
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 100.0
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 100.0
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 100.0
CHL00201430 syh histidine-tRNA synthetase; Provisional 100.0
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 100.0
TIGR00414418 serS seryl-tRNA synthetase. This model represents 100.0
PRK05431425 seryl-tRNA synthetase; Provisional 100.0
PLN02734684 glycyl-tRNA synthetase 100.0
TIGR00389551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 100.0
PLN02530487 histidine-tRNA ligase 100.0
PRK14894539 glycyl-tRNA synthetase; Provisional 100.0
PRK00960517 seryl-tRNA synthetase; Provisional 100.0
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 100.0
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 100.0
PRK12420423 histidyl-tRNA synthetase; Provisional 100.0
PLN02972763 Histidyl-tRNA synthetase 100.0
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 100.0
KOG1936518 consensus Histidyl-tRNA synthetase [Translation, r 100.0
PLN02678448 seryl-tRNA synthetase 100.0
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 99.98
PLN02320502 seryl-tRNA synthetase 99.97
KOG2298599 consensus Glycyl-tRNA synthetase and related class 99.96
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 99.96
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 99.96
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 99.94
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 99.93
cd02426128 Pol_gamma_b_Cterm C-terminal domain of mitochondri 99.91
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.9
PF0918068 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; Int 99.9
KOG2509455 consensus Seryl-tRNA synthetase [Translation, ribo 99.89
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 99.86
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 99.83
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 99.8
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 99.79
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.77
cd00858121 GlyRS_anticodon GlyRS Glycyl-anticodon binding dom 99.73
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 99.72
PF0312994 HGTP_anticodon: Anticodon binding domain; InterPro 99.7
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 99.7
PRK14938387 Ser-tRNA(Thr) hydrolase; Provisional 99.69
cd0086194 ProRS_anticodon_short ProRS Prolyl-anticodon bindi 99.66
COG3705390 HisZ ATP phosphoribosyltransferase involved in his 99.58
cd0086091 ThrRS_anticodon ThrRS Threonyl-anticodon binding d 99.56
PRK07080317 hypothetical protein; Validated 99.49
cd0073894 HGTP_anticodon HGTP anticodon binding domain, as f 99.47
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.42
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 99.3
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.24
cd0085991 HisRS_anticodon HisRS Histidyl-anticodon binding d 99.14
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 99.11
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 98.9
PRK09350306 poxB regulator PoxA; Provisional 98.73
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 98.62
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 98.42
KOG10351351 consensus eIF-2alpha kinase GCN2 [Translation, rib 98.31
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 98.23
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 98.15
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 98.15
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 98.13
PRK06462335 asparagine synthetase A; Reviewed 97.92
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 97.9
TIGR00459583 aspS_bact aspartyl-tRNA synthetase, bacterial type 97.9
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 97.88
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 97.87
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 97.86
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 97.86
PLN02903652 aminoacyl-tRNA ligase 97.82
PRK00476588 aspS aspartyl-tRNA synthetase; Validated 97.82
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 97.78
PTZ00417585 lysine-tRNA ligase; Provisional 97.71
PTZ00385659 lysyl-tRNA synthetase; Provisional 97.68
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 97.68
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 97.63
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 97.62
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 97.61
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 97.57
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 97.56
PRK12445505 lysyl-tRNA synthetase; Reviewed 97.56
PLN02502553 lysyl-tRNA synthetase 97.54
PLN02850530 aspartate-tRNA ligase 97.53
COG0173585 AspS Aspartyl-tRNA synthetase [Translation, riboso 97.52
PLN02603565 asparaginyl-tRNA synthetase 97.51
PF12745273 HGTP_anticodon2: Anticodon binding domain of tRNAs 97.5
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 97.47
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 97.38
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 97.31
PTZ00425586 asparagine-tRNA ligase; Provisional 97.3
PLN02221572 asparaginyl-tRNA synthetase 97.27
PLN02532633 asparagine-tRNA synthetase 97.22
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 97.17
PTZ00401550 aspartyl-tRNA synthetase; Provisional 97.11
KOG2411628 consensus Aspartyl-tRNA synthetase, mitochondrial 96.57
KOG1885560 consensus Lysyl-tRNA synthetase (class II) [Transl 96.47
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 96.46
TIGR00470533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 95.4
KOG0556533 consensus Aspartyl-tRNA synthetase [Translation, r 94.75
KOG0554446 consensus Asparaginyl-tRNA synthetase (mitochondri 94.61
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 93.71
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 93.01
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 91.03
PLN02788402 phenylalanine-tRNA synthetase 90.83
PF0918168 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; Int 85.83
KOG0555545 consensus Asparaginyl-tRNA synthetase [Translation 84.49
PRK06253529 O-phosphoseryl-tRNA synthetase; Reviewed 83.51
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 82.38
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-134  Score=1023.93  Aligned_cols=530  Identities=45%  Similarity=0.793  Sum_probs=500.0

Q ss_pred             ccCCCCcccCcccCCCccccchhhHHHhhhcccCCCCCcccccccccccCCCCCCchhhHHHHhhcccccCCCceeecC-
Q 047998            4 ALRLPSLHLTNLFSSSPCISRRSSAILRRHHRLRPPPTLTAGFSAQSAASSPPETDDKVVEIEKNRASQDRGNRERVIT-   82 (558)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-   82 (558)
                      .++++++  |...+|   ++.  +..+++..+.++.+.  ...+.++..-+.|++.++  +++.        .+..|++ 
T Consensus         2 ~~~~~~~--t~~~~~---~~~--~~~~~~~~~~~~k~~--~~~~~k~~~~~~~~~~~~--~~~~--------~~~~gl~~   62 (551)
T KOG4163|consen    2 SLRYKEV--TGQLFP---ATT--PATLVDFSCKVSKEA--KPKPKKPKKKAEPSKKSA--AVKK--------ATLLGLTA   62 (551)
T ss_pred             ccccccc--cccccc---ccc--CccccchhccCCccc--CccccCcccccCcccccc--chhh--------hhhccccc
Confidence            3566777  776666   222  788888888888887  777888888888888872  1222        1344664 


Q ss_pred             CCCcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccC
Q 047998           83 PRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFS  162 (558)
Q Consensus        83 ~~~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~  162 (558)
                      ++++||++||.+++.+++|+||++++|||+++|+++.||+.|+.+++.++++.|++++|||+|++.+++++++.|+++|+
T Consensus        63 ~k~~df~~WY~qVitk~emieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~Fa  142 (551)
T KOG4163|consen   63 KKEEDFPEWYSQVITKGEMIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFA  142 (551)
T ss_pred             ccccchHHHHHHHhhhhhhheeecccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeCC
Q 047998          163 PELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHAT  241 (558)
Q Consensus       163 ~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~~  241 (558)
                      ||+.|||..|+.+|++++++|||||+.|+++|++|++||||||||+|||++|.|||.+ |.||||+|||+|||+|++|++
T Consensus       143 PEvAwVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfat  222 (551)
T KOG4163|consen  143 PEVAWVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFAT  222 (551)
T ss_pred             cceEEEEecCCcccccceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhCC
Confidence            9999999999999999999999999999999999999999999999999999999999 889999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcC-ccceeecceEecCcccccccCeEEeC
Q 047998          242 PEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD-KRALQAGTSHNLGQNFSLAFGTQFTD  320 (558)
Q Consensus       242 ~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~d-gr~lq~gti~~Lg~~~s~~f~i~y~d  320 (558)
                      .++|++|+.+|+|+|.+++.++|++||+.|.|++.|+|+|+++|+++|+++++ ||++|.+|+|+||||||++|++.|.|
T Consensus       223 ~~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse~EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSkmF~i~~ed  302 (551)
T KOG4163|consen  223 PEEAEEEVLQILDLYARVYEELLAIPVVKGRKSEKEKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSKMFEIVFED  302 (551)
T ss_pred             HhHHHHHHHHHHHHHHHHHHhhhccccccCccchhhhccCCcceEEEeeeeccccccccccchhhhhHHHHHhhceeecC
Confidence            99999999999999999999999999999999999999999999999999987 89999999999999999999999999


Q ss_pred             C-CCceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCc----chhHHHHHHHHHHHHHHhhCCc
Q 047998          321 E-NGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKA----DEKTGVLSAALSAKEVLQKSGI  395 (558)
Q Consensus       321 ~-~g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~----~~~~~~~~~a~~I~~~Lr~~Gi  395 (558)
                      + +|.++++||+|||+++|.|++++|.||||+||+|||.+||+||+|||++-++    ++.+.+.++|..+...|..+||
T Consensus       303 ~~~g~~~fv~QnSWg~sTRtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~gi  382 (551)
T KOG4163|consen  303 PGEGEKEFVWQNSWGLSTRTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESRLLGAGI  382 (551)
T ss_pred             CCccchhheeecccccccceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHHHHHhccCc
Confidence            8 7888899999999999999999999999999999999999999999997533    2367799999999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHHHHHHHH
Q 047998          396 RVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALL  475 (558)
Q Consensus       396 rv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~~~~~L~  475 (558)
                      |++.|+|+++++||||++||++|||+||+|||+|+++++|++.+||+++|.      +|++++|...|+++|++||.+||
T Consensus       383 R~~~D~rDnytpGwKfnhwElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~------~v~~~~l~~~v~elLe~iq~~m~  456 (551)
T KOG4163|consen  383 RAEADLRDNYTPGWKFNHWELKGVPLRIEIGPRDLASNQVVAVRRDTGEKK------DVSLGDLEKTVKELLEKIQTNLY  456 (551)
T ss_pred             eEeecccccCCCCccccceeecCceeEEEeccchhhhCeEEEEEccCCccc------ccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999997      89999999999999999999999


Q ss_pred             HHHHHHhhcCeeecccHHHHHHHHhCCCEEEeeCCCChhhHHHHHHHh------------CCcccccccCCCCCCccccc
Q 047998          476 ERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEET------------GATIRCFPFEQPQGNKTCFM  543 (558)
Q Consensus       476 ~rA~~~~~~~i~~v~~~ee~k~al~~~~~v~apwc~~~~ce~~ik~~~------------~a~~~cip~~~~~~~~~C~~  543 (558)
                      ++|++++++|++.|++|+||+++|++++++++||||..+||++||++|            ||++|||||+||..+.+|++
T Consensus       457 ~kA~~~rds~~~~v~~~~eF~~aL~~k~iilaPwcg~~ecE~~IK~~s~r~e~ge~apsmGAKtlCiPf~qpe~~~kcl~  536 (551)
T KOG4163|consen  457 EKAKEKRDSHIVKVNTWEEFVKALDQKKIILAPWCGEIECEKDIKKRTARDEDGEEAPSMGAKTLCIPFEQPELGEKCLC  536 (551)
T ss_pred             HHHHHHhhhheeeeeeHHHHHHHhccCCEEEccccCcHHHHHHHHhhhccccCCCCcccCCceeeeecCCCCCCccceec
Confidence            999999999999999999999999999999999999999999999988            99999999999998899999


Q ss_pred             cCCCcceEEEEeecC
Q 047998          544 TGNPAQEVALFAKSY  558 (558)
Q Consensus       544 ~g~~a~~~~~~~rsY  558 (558)
                      ||+||+.|+||||||
T Consensus       537 cg~~ak~~~lfGRSY  551 (551)
T KOG4163|consen  537 CGKPAKKYTLFGRSY  551 (551)
T ss_pred             cCCccceEEEecccC
Confidence            999999999999999

>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional Back     alignment and domain information
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [] Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>PF09181 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR015264 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
1h4q_A477 Prolyl-Trna Synthetase From Thermus Thermophilus Co 1e-149
4hvc_A519 Crystal Structure Of Human Prolyl-trna Synthetase I 1e-107
3ial_A518 Giardia Lamblia Prolyl-Trna Synthetase In Complex W 6e-79
1nj1_A501 Crystal Structure Of Prolyl-Trna Synthetase From Me 7e-77
1nj8_A459 Crystal Structure Of Prolyl-Trna Synthetase From Me 4e-76
2i4l_A458 Rhodopseudomonas Palustris Prolyl-trna Synthetase L 2e-12
2j3l_A572 Prolyl-Trna Synthetase From Enterococcus Faecalis C 5e-10
1qf6_A642 Structure Of E. Coli Threonyl-Trna Synthetase Compl 3e-08
1evk_A401 Crystal Structure Of A Truncated Form Of Threonyl-T 3e-08
1nyq_A645 Structure Of Staphylococcus Aureus Threonyl-Trna Sy 5e-06
>pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed With Trnapro(Cgg), Atp And Prolinol Length = 477 Back     alignment and structure 
Iteration: 1

 Score =  524 bits (1350), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/484 (54%), Positives = 341/484 (70%), Gaps = 11/484 (2%)
Query: 77  RERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETG 136
           +E+ +TP+SQDF+ WYL+VI  AELADYGPVRGT+V+RPYGYAIWE IQ  L+  FKETG
Sbjct: 3   KEKGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETG 62
Query: 137 HSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196
           H N YFP FIP SF+ KEA HVEGFSPELA+VT  GG+ELEE L VRPTSET++ +M+++
Sbjct: 63  HQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 122
Query: 197 WIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIY 256
           WI S+RDLP L+NQW NV RWEMRT+PF+RT EFLWQEGHTAHAT EEAE+E  +M+ IY
Sbjct: 123 WIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIY 182
Query: 257 TKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGT 316
            + A E+ AIPVI G K++ E FAGA  T TIEA+M D +ALQAGTSH LG+NF+ AF  
Sbjct: 183 ARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDI 242
Query: 317 QFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEK 376
           +F D + Q ++V  TSW +S RF+G IIMTHGDD GL+LPPR+APIQVVIVPI+K  + +
Sbjct: 243 KFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKD-ESR 301
Query: 377 TGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVV 436
             VL AA   ++ L   G+RV LDD DQ TPG+KF+ WE+KG+P R+E+GP+D+  G  V
Sbjct: 302 ERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAV 361
Query: 437 ISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELK 496
           ++ R + GK+      ++  + L   +  KLD     L  RA +FR+ +   V +YE  K
Sbjct: 362 LASR-LGGKE------TLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFK 414
Query: 497 EAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQ--EVALF 554
           EA+  G +A        A E  ++EET AT RC PFE       C   G P+   +  +F
Sbjct: 415 EAVQEG-FALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVF 473
Query: 555 AKSY 558
           AK+Y
Sbjct: 474 AKAY 477
>pdb|4HVC|A Chain A, Crystal Structure Of Human Prolyl-trna Synthetase In Complex With Halofuginone And Atp Analogue Length = 519 Back     alignment and structure
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With Prolyl- Adenylate Length = 518 Back     alignment and structure
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanothermobacter Thermautotrophicus Bound To Cysteine Sulfamoyl Adenylate Length = 501 Back     alignment and structure
>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanocaldococcus Janaschii Length = 459 Back     alignment and structure
>pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-trna Synthetase Length = 458 Back     alignment and structure
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis Complexed With A Prolyl-Adenylate Analogue ('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine) Length = 572 Back     alignment and structure
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed With Its Cognate Trna Length = 642 Back     alignment and structure
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna Synthetase With The Ligand Threonine Length = 401 Back     alignment and structure
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna Synthetase Complexed With An Analogue Of Threonyl Adenylate Length = 645 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 0.0
3ial_A518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 0.0
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 0.0
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 0.0
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 4e-21
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 4e-04
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 3e-20
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 4e-13
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 1e-10
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 5e-10
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 6e-10
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 6e-10
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 8e-10
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Length = 477 Back     alignment and structure
 Score =  741 bits (1916), Expect = 0.0
 Identities = 265/484 (54%), Positives = 339/484 (70%), Gaps = 11/484 (2%)

Query: 77  RERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETG 136
           +E+ +TP+SQDF+ WYL+VI  AELADYGPVRGT+V+RPYGYAIWE IQ  L+  FKETG
Sbjct: 3   KEKGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETG 62

Query: 137 HSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196
           H N YFP FIP SF+ KEA HVEGFSPELA+VT  GG+ELEE L VRPTSET++ +M+++
Sbjct: 63  HQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 122

Query: 197 WIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIY 256
           WI S+RDLP L+NQW NV RWEMRT+PF+RT EFLWQEGHTAHAT EEAE+E  +M+ IY
Sbjct: 123 WIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIY 182

Query: 257 TKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGT 316
            + A E+ AIPVI G K++ E FAGA  T TIEA+M D +ALQAGTSH LG+NF+ AF  
Sbjct: 183 ARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDI 242

Query: 317 QFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEK 376
           +F D + Q ++V  TSW +S RF+G IIMTHGDD GL+LPPR+APIQVVIVPI+K  + +
Sbjct: 243 KFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKD-ESR 301

Query: 377 TGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVV 436
             VL AA   ++ L   G+RV LDD DQ TPG+KF+ WE+KG+P R+E+GP+D+  G  V
Sbjct: 302 ERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAV 361

Query: 437 ISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELK 496
           ++ R   GK+      ++  + L   +  KLD     L  RA +FR+ +   V +YE  K
Sbjct: 362 LASRL-GGKE------TLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFK 414

Query: 497 EAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQ--EVALF 554
           EA+    +A        A E  ++EET AT RC PFE       C   G P+   +  +F
Sbjct: 415 EAVQ-EGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVF 473

Query: 555 AKSY 558
           AK+Y
Sbjct: 474 AKAY 477
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Length = 518 Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501 Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Length = 459 Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Length = 458 Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Length = 458 Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Length = 572 Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Length = 401 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Length = 346 Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Length = 471 Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Length = 460 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query558
3ial_A518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
4hvc_A519 Bifunctional glutamate/proline--tRNA ligase; ligas 100.0
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 100.0
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 100.0
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 100.0
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 100.0
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 100.0
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 100.0
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 100.0
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 100.0
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 100.0
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 100.0
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 100.0
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 100.0
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 100.0
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 100.0
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 100.0
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 100.0
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 100.0
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 100.0
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 100.0
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 100.0
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 100.0
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 100.0
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 100.0
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 100.0
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 100.0
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 100.0
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 100.0
3err_A536 Fusion protein of microtubule binding domain from 100.0
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 99.97
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 99.96
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 99.94
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 99.93
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 99.72
1v95_A130 Nuclear receptor coactivator 5; coactivator indepe 99.66
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.58
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.24
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 99.08
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 98.79
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 98.77
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 98.69
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 98.67
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 98.65
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 98.51
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 98.42
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 98.24
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 98.2
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.99
2du3_A534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.94
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 97.93
1c0a_A585 Aspartyl tRNA synthetase; protein-RNA complex, lig 97.92
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 97.91
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 97.89
4ah6_A617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 97.76
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 97.7
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 97.69
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 97.61
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 97.49
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 97.23
2du7_A549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 96.99
2odr_B648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.72
2odr_A665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.71
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.7
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.68
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 95.62
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 93.67
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 93.26
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 92.73
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 92.5
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 91.74
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
Probab=100.00  E-value=3e-115  Score=949.54  Aligned_cols=475  Identities=34%  Similarity=0.580  Sum_probs=449.5

Q ss_pred             eeecCCCCcchHHHHHHHHHhcccccc-CCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhc
Q 047998           78 ERVITPRSQDFNAWYLDVISNAELADY-GPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEAS  156 (558)
Q Consensus        78 ~~~i~~~~~~~~~wy~~~~~~a~l~d~-~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sg  156 (558)
                      +.-.+++++||++||++++.++||+|+ ++++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.+++|
T Consensus        14 ~~~~~~~~~~f~~wy~~l~~~aglid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sg   93 (518)
T 3ial_A           14 TFSLTKTRDTFADWFDAIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESD   93 (518)
T ss_dssp             CCCCCCCTTTHHHHHHHHHHHTTCEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHH
T ss_pred             EEecCcccccccHHHHHHHHHCCCcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcC
Confidence            344567889999999999999999998 7899999999999999999999999999999999999999999999988899


Q ss_pred             CccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCC-CCCCccccceEEEecc
Q 047998          157 HVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEM-RTKPFVRTLEFLWQEG  235 (558)
Q Consensus       157 h~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~-~~rGllR~REF~q~d~  235 (558)
                      |+++|.+|||+|+++|+.+++++++||||+|++++.+|++|++||++||+|+|||++|||||. +++||+|+|||+|+|+
T Consensus        94 h~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~  173 (518)
T 3ial_A           94 HIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEA  173 (518)
T ss_dssp             HHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEE
T ss_pred             CcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeE
Confidence            999999999999998866667899999999999999999999999999999999999999994 5889999999999999


Q ss_pred             eeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccceeecceEecCcccccccC
Q 047998          236 HTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFG  315 (558)
Q Consensus       236 h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f~  315 (558)
                      |+||++++++++|+..|+++|.+++.+.|++|+..+.++.+++|.||.++++||++|+|||++|+||+|+||++||++|+
T Consensus       174 h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~~~~~~~e~~~gA~yt~~iE~~~pdgr~ie~gt~~~Lg~~~s~rf~  253 (518)
T 3ial_A          174 HCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFD  253 (518)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEEEECGGGCCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTT
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeeecChhhccCCCccceEEEEEcCCCCEEEEeceecccchhhhhcC
Confidence            99999999999999999999999994559999999988889999999999999999999999999999999999999999


Q ss_pred             eEEeCCCCceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCc----chhHHHHHHHHHHHHHHh
Q 047998          316 TQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKA----DEKTGVLSAALSAKEVLQ  391 (558)
Q Consensus       316 i~y~d~~g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~----~~~~~~~~~a~~I~~~Lr  391 (558)
                      ++|.|++|+.+++|++|||+++|+|++|+|+|+|++|++||+++||+||+|||+..++    ++.+.+.++|.+|++.|+
T Consensus       254 i~y~d~~g~~~~~h~~~~G~~~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~  333 (518)
T 3ial_A          254 ILYANKANESVHPYLTCAGISTRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLK  333 (518)
T ss_dssp             CCEECTTCCEECCEEEEEEEETHHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEECCCCCEeeeEEeccchHHHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998543    122468999999999999


Q ss_pred             hC-CcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCC--ccccccccccChHHH---------
Q 047998          392 KS-GIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPG--KQGKVFGISMEPSIL---------  459 (558)
Q Consensus       392 ~~-Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~e--k~~~~~~v~v~~~el---------  459 (558)
                      ++ ||||++|+|++.++|+||++|+++|||++|+||++|+++|+|+|++|++++  +.      .|++++|         
T Consensus       334 ~~~Girv~~Ddr~~~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~~~~k~------~v~~~el~~~~~~~~~  407 (518)
T 3ial_A          334 SKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKR------VIPITEVMKVSSHTTE  407 (518)
T ss_dssp             HTTCCCEEECCCTTSCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCGGGCE------EEEHHHHHCCC-----
T ss_pred             hccCeEEEEECCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcccee------EeeHHHHhhhhhhhhh
Confidence            99 999999999336999999999999999999999999999999999999998  65      7899999         


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHhhcCeeecccHHHHHHHHhC-CCEEEeeCCCCh----hhHHHHHHHhCCccc
Q 047998          460 ------EAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAISM-GKWARGPWSASD----ADELKVKEETGATIR  528 (558)
Q Consensus       460 ------~~~i~~ll~~~~~~L~~rA~~~~~~~i~~v~~~ee~k~al~~-~~~v~apwc~~~----~ce~~ik~~~~a~~~  528 (558)
                            ++.|.++|++||++||+||+++++++|+.+++|+||++++++ +||+++||||+.    +||++||++||||+|
T Consensus       408 ~~~~~~~~~~~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~~  487 (518)
T 3ial_A          408 NHELVVKNVIKDELDAYKARLKEKAFAFHNSMVTNCKSFDEIVACIENKGGLARFPFYTTEADGEVWDKKLKDACSAEIR  487 (518)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHHHHHHHTEEECSSHHHHHHHHHHTCSEEEEEESCSSGGGHHHHHHHHHHHSCEEE
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHHHhCEEEcCCHHHHHHHHhcCCCEEEEEecCCCccchHHHHHHHHHhCCeEe
Confidence                  899999999999999999999999999999999999999976 589999999999    999999999999999


Q ss_pred             ccccCC-CCCCccccccCCCcceEEEEeecC
Q 047998          529 CFPFEQ-PQGNKTCFMTGNPAQEVALFAKSY  558 (558)
Q Consensus       529 cip~~~-~~~~~~C~~~g~~a~~~~~~~rsY  558 (558)
                      ||||++ +..+++|++||+||++|+||||||
T Consensus       488 ~~p~~~~~~~~~~c~~~g~~a~~~~~~~~~y  518 (518)
T 3ial_A          488 GHNPDENVLPGEVCALSGKPAVCYMYCAKSY  518 (518)
T ss_dssp             EECTTSCCCTTCBCTTTCSBCSEEEEEECBC
T ss_pred             ccccccCCCCCCeeeccCCcceEEEEEEEeC
Confidence            999998 445689999999999999999999
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1 Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 558
d1hc7a2272 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) 3e-63
d1nj8a3268 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) 5e-61
d1nj1a3265 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS 3e-54
d1hc7a1127 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS 1e-25
d1seta2311 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS 1e-23
d1hc7a374 d.68.5.1 (A:404-477) C-terminal domain of ProRS {T 1e-21
d1nj1a271 d.68.5.1 (A:411-481) C-terminal domain of ProRS {A 4e-21
d1nj1a1127 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS 5e-21
d1g5ha1127 c.51.1.1 (A:343-469) The aaRS-like accessory subun 6e-19
d1nj8a1126 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS 1e-18
d1qf6a4291 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th 2e-17
d1atia1111 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS 5e-15
d1qf6a1110 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (Thr 2e-14
d1nyra4291 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th 6e-11
d1nyra1113 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (Thr 6e-11
d1qe0a195 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (His 5e-10
d1wu7a197 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (His 6e-08
d1h4vb196 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (His 6e-07
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  206 bits (525), Expect = 3e-63
 Identities = 179/272 (65%), Positives = 217/272 (79%)

Query: 79  RVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHS 138
           + +TP+SQDF+ WYL+VI  AELADYGPVRGT+V+RPYGYAIWE IQ  L+  FKETGH 
Sbjct: 1   KGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQ 60

Query: 139 NMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWI 198
           N YFP FIP SF+ KEA HVEGFSPELA+VT  GG+ELEE L VRPTSET++ +M+++WI
Sbjct: 61  NAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWI 120

Query: 199 HSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTK 258
            S+RDLP L+NQW NV RWEMRT+PF+RT EFLWQEGHTAHAT EEAE+E  +M+ IY +
Sbjct: 121 RSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYAR 180

Query: 259 FAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQF 318
            A E+ AIPVI G K++ E FAGA  T TIEA+M D +ALQAGTSH LG+NF+ AF  +F
Sbjct: 181 LAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKF 240

Query: 319 TDENGQRQHVWQTSWAISTRFVGGIIMTHGDD 350
            D + Q ++V  TSW +S RF+G IIMTHGDD
Sbjct: 241 QDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDD 272
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268 Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 265 Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Length = 127 Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 311 Back     information, alignment and structure
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]} Length = 74 Back     information, alignment and structure
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 71 Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 127 Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 127 Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 126 Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Length = 291 Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 111 Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 110 Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 291 Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 113 Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 95 Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 97 Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 96 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query558
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 100.0
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 100.0
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 100.0
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 100.0
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 100.0
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 100.0
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.97
d1nj1a1127 Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me 99.96
d1hc7a1127 Prolyl-tRNA synthetase (ProRS) domain {Thermus the 99.96
d1nj8a1126 Prolyl-tRNA synthetase (ProRS) domain {Archaeon (M 99.95
d1hc7a374 C-terminal domain of ProRS {Thermus thermophilus [ 99.91
d1qf6a1110 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.89
d1nyra1113 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.89
d1g5ha1127 The aaRS-like accessory subunit of mitochondrial p 99.89
d1nj1a271 C-terminal domain of ProRS {Arhaeon (Methanothermo 99.88
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 99.88
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.85
d1atia1111 Glycyl-tRNA synthetase (GlyRS), C-terminal domain 99.85
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 99.84
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 99.84
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 99.82
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 99.82
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 99.8
d1kmma199 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.7
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.68
d1qe0a195 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.67
d1h4vb196 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.62
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 99.49
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 98.15
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 98.02
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 98.0
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.96
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 97.94
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 97.87
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 97.78
d1v95a_130 Nuclear receptor coactivator 5 (KIAA1637) {Human ( 97.52
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.45
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 89.94
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]

Probab=100.00  E-value=5.5e-55  Score=439.81  Aligned_cols=264  Identities=38%  Similarity=0.688  Sum_probs=249.5

Q ss_pred             cchHHHHHHHHHhccccccC-CCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCc
Q 047998           86 QDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPE  164 (558)
Q Consensus        86 ~~~~~wy~~~~~~a~l~d~~-~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~E  164 (558)
                      -||++||.++++|++|+|+. +++|+++|+|.|++||++|+++++++++++||++|.||+|.+.++|.++++|++++.++
T Consensus         2 ~~~~~~y~el~~k~~L~d~~~~v~G~~~~lP~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~   81 (268)
T d1nj8a3           2 LEFSEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDE   81 (268)
T ss_dssp             CCHHHHHHHHHHHTSSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGG
T ss_pred             CchHHHHHHHHHHcCCcccCCCCCccEEECccHHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccc
Confidence            48999999999999999975 58999999999999999999999999999999999999999999998888999999999


Q ss_pred             eEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEE-EecceeeeCCh
Q 047998          165 LALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAHATP  242 (558)
Q Consensus       165 my~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~-q~d~h~~~~~~  242 (558)
                      ||.++..|+...+++++||||+|++++.+|+++++|||+||+|+||+++|||||.+ .+|++|+|||+ |.|+|+|+++.
T Consensus        82 ~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~~~~~~  161 (268)
T d1nj8a3          82 VYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTK  161 (268)
T ss_dssp             CEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSH
T ss_pred             eeEEeccccccchhhhhcccCCCchhHHhhhhhccchhhhheEEeeccccccccccccccceeEEEEeeechhceecccc
Confidence            99999988766678899999999999999999999999999999999999999977 56999999997 77889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccceeecceEecCcccccccCeEEeCCC
Q 047998          243 EEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDEN  322 (558)
Q Consensus       243 ~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f~i~y~d~~  322 (558)
                      +++++++..++++|++++.. +++|+..+.++..+...++...+.+++++++||.+|+||+|++|++++++||++|.+++
T Consensus       162 ~~~~~~~~~~~~~y~~if~~-l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~t~~~lg~~~s~~f~l~y~~~d  240 (268)
T d1nj8a3         162 EEAENQVKEAISIYKKFFDT-LGIPYLISKRPEWDKFPGAEYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFETPT  240 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HTCCCEEEEECTTSCCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECTT
T ss_pred             chhhHHHHHHHHHHHHHHHh-cCcceeeccccccccccchhcccchhhhhhccccEEEeeecccCCCcChhcCCEEECCC
Confidence            99999999999999999887 79999988888888888888889899999999999999999999999999999999999


Q ss_pred             CceeeEeeeccchHHHHHHHHHHHhCCC
Q 047998          323 GQRQHVWQTSWAISTRFVGGIIMTHGDD  350 (558)
Q Consensus       323 g~~~~v~~~s~Gi~eRli~~lie~~~D~  350 (558)
                      |+++++|++|+|+++|+|++|||+|+|+
T Consensus       241 g~~~~~h~~~~G~~eR~ia~liE~h~D~  268 (268)
T d1nj8a3         241 GDKDYAYQTCYGISDRVIASIIAIHGDE  268 (268)
T ss_dssp             SSEEECEEEEEEECTHHHHHHHHHHCBT
T ss_pred             CCCcceeeccCcHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999986
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure