Citrus Sinensis ID: 048006

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830---
Protein Sequence
ARVADSNIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRDDADTSEDEDQFITLGFYVSLILGFIVGFWGVCGTLLRS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccHHHHcccccccEEEccccccccccccccccccccccccEEEccccccccccccccccccccccEEEEccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHccccccccccEEEcccccEEEccHHHHcccccccEEEccccEEEEEEcccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccccEEEccccccccccccccccccEEEccccccEEccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccEEEEcccHHHHHcccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHHHcccccccccccEEEEEEEEEcccccEEcccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEHHHHHHHHHHHHEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccEEEEEEEcccccccccccccccHHHHccHcccEEEccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccccHHHccccccEEEEccccccccccccHHcccccccccEEEEcccccccccccHHHHcHHHHHHEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccHcccHHHHHHHHHccccccccccHHHHHccccccEEEEcccccccccccccccccccEEEEEccccccccccHHHHccccccEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHHccccccEEEEcccccccccccccccccEEEEcccccccccccHHHcccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHcHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHcccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccHHHHEEccccccccccEEEEEcccccHHHccccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
ARVADSNIIRCIDEEREALLTFKASLVdesgvlsswgpedekrdcckwtglrcsnktnhvilldlqpidfdsfplrgtispallklhdlrhlnlsfndfsgspipefIGSLSKLRYLdlfgtvfagpippqlgnlsrlqhldlgsnylfstgnldwlsHLSYLRYLnldesnlanssdWFQVIGKLhslktlslhscylppviplslnhlnsstsLETLVLsdnnltssiypwlpnisSIFISIDLgfnqlqgsipesfQHMVYLEHLRLSFNeleggipkffGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKElhlannplvlklshdwvppFQLIIISlssckigphfpkwlqtqNQIELldisntgisdtipdwfwnlsnkfsFLDLASNqikgklpnlssrfgtsnpgidissnhfeglipplpsnssflnlsknrfsGSISFLCSISGSKLTYVDLSsnllsgklpdcwwtFDSLVILNLennsfsgripdsmgfLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDlgknalygeiptwmgESLSNLIVLSlksnkfhgkipFQLCQLAFLQVLDLSLnnisgkipkcfnnftamtqerssdptikdklMLTWKGSEREYRSTLGLVKSLElsnnnlngavpEEIMDLVGLVALnlsknhltgqispkigqlksldfldlsrnqlvggipsslsqlsglsvmdlsynnlsgkiptvtqlqsfndtvyagnpelcglplpnkcrdeesaagpgitegrddadtsededqFITLGFYVSLILGFIVGFWGVCGTLLRS
Flexible Loop (DISEMBL)
arvadsniircIDEEREALLTFKASLVdesgvlsswgpedekrdCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAmtqerssdptikdKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAgpgitegrddadtSEDEDQFITLGFYVSLILGFIVGFWGVCGTLLRS
Low Complexity Region (SEG)
ARVADSNIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPAllklhdlrhlnlSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGklhslktlslhsCYLPPVIPlslnhlnsstsletlVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIpplpsnssflnlsknrfsGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRDDADTSEDEDQFITLGFYVSLILGFIVGFWGVCGTLLRS
Disordered region (IsUnstruct)
******NIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKG*************************LI********FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM***********DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPL*****************************QFITLGFYVSLILGFIVGFWGVCGTLL**
Disordered Region (DISOPRED)
***********IDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLP**************************EDQFITLGFYVSLILGFIVGFWGVCGTLLRS
Disordered Region (DISEMBL)
ARVADSNIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRDDADTSEDEDQFITLGFYVSLILGFIVGFWGVCGTLLRS
Disordered Region (DISPRO)
*********RCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKC********************SEDEDQFITLGFYVSLILGFIVGFWGVCGTLLRS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ARVADSNIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRDDADTSEDEDQFITLGFYVSLILGFIVGFWGVCGTLLRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	833	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.883	0.868	0.304	1e-71
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.878	0.664	0.304	1e-71
Q9FL28	1173	LRR receptor-like serine/	no	no	0.855	0.607	0.312	1e-68
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.900	0.600	0.308	7e-66
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.816	0.617	0.307	1e-62
Q9LP24	1120	Probable leucine-rich rep	no	no	0.805	0.599	0.300	1e-61
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.821	0.546	0.322	4e-61
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.662	0.482	0.324	2e-59
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.833	0.610	0.304	3e-58
O49318	1124	Probable leucine-rich rep	no	no	0.793	0.588	0.292	2e-57

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  271 bits (694), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 263/864 (30%), Positives = 405/864 (46%), Gaps = 128/864 (14%)

Query: 11  CIDEEREALLTFKASLVDESG--VLSSW-GPEDEKRDCCKWTGLRCSNKTNHVILLDLQP 67
           C D++R+ALL F+      +   +++ W GP ++  DCC W G+ C++K+  VI LD+ P
Sbjct: 34  CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDI-P 92

Query: 68  IDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGP 127
             F +  L+   + +L KL  LRHL+L+  +  G  IP  +G+LS L  ++L+   F G 
Sbjct: 93  NTFLNNYLK--TNSSLFKLQYLRHLDLTNCNLYGE-IPSSLGNLSHLTLVNLYFNKFVGE 149

Query: 128 IPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLH 187
           IP                    S GNL+ L HL          +N   + +    +G L 
Sbjct: 150 IPA-------------------SIGNLNQLRHLIL--------ANNVLTGEIPSSLGNLS 182

Query: 188 SLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLG 247
            L  L L S  L   IP S+  L     L  L L+ NNL   I   L N+S++ + + L 
Sbjct: 183 RLVNLELFSNRLVGKIPDSIGDL---KQLRNLSLASNNLIGEIPSSLGNLSNL-VHLVLT 238

Query: 248 FNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLS--- 304
            NQL G +P S  +++ L  +    N L G IP  F N+  L    LS+N  +       
Sbjct: 239 HNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDM 298

Query: 305 EIIQNLS---------------SGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHL 348
            I  NL                S  L  SL+S+YL EN  TG I  +  S+ + L++L L
Sbjct: 299 SIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLIL 358

Query: 349 ANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDW 408
             N L                        GP  P+ +     +E LDIS+   +  IP  
Sbjct: 359 GRNRLH-----------------------GP-IPESISRLLNLEELDISHNNFTGAIPPT 394

Query: 409 FWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHF---------EGLIPPLP 459
              L N    LDL+ N ++G++P    R  T    + +S N F         E LI  L 
Sbjct: 395 ISKLVNLLH-LDLSKNNLEGEVPACLWRLNT----MVLSHNSFSSFENTSQEEALIEEL- 448

Query: 460 SNSSFLNLSKNRFSGSISFL-CSISGSKLTYVDLSSNLLSGKLPDCWWTFD-SLVILNLE 517
                 +L+ N F G I ++ C +S   L ++DLS+NL SG +P C   F  S+  LNL 
Sbjct: 449 ------DLNSNSFQGPIPYMICKLSS--LGFLDLSNNLFSGSIPSCIRNFSGSIKELNLG 500

Query: 518 NNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWM 577
           +N+FSG +PD       + +L + +N+L G+   S  NC  L L+++  N +    P+W+
Sbjct: 501 DNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL 560

Query: 578 GESLSNLIVLSLKSNKFHGKIPFQLCQLAF--LQVLDLSLNNISGKIPKCF----NNFTA 631
            ESL +L VL+L+SNKF+G +  +   + F  L+++D+S NN SG +P  +     + T 
Sbjct: 561 -ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTT 619

Query: 632 MTQE---------RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEI 682
           +T+E         R +D    +  M+  KG +  +       ++++ S N +NG +PE +
Sbjct: 620 LTEEMDQYMTEFWRYADSYYHEMEMVN-KGVDMSFERIRRDFRAIDFSGNKINGNIPESL 678

Query: 683 MDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS 742
             L  L  LNLS N  T  I   +  L  L+ LD+SRN+L G IP  L+ LS LS M+ S
Sbjct: 679 GYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFS 738

Query: 743 YNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRDDADTSED 802
           +N L G +P  TQ Q    + +  NP L G  L + CRD   A  P      D ++  E+
Sbjct: 739 HNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRD-TGALNPTSQLPEDLSEAEEN 795

Query: 803 EDQFI--TLGFYVSLILGFIVGFW 824
              ++   + +   ++ G ++G +
Sbjct: 796 MFNWVAAAIAYGPGVLCGLVIGHF 819

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  271 bits (694), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 254/834 (30%), Positives = 393/834 (47%), Gaps = 102/834 (12%)

Query: 8   IIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQP 67
           ++R ++EE   LL FKA L D +G L+SW   D   + C WTG+ C++      L  +  
Sbjct: 20  LVRSLNEEGRVLLEFKAFLNDSNGYLASWNQLDS--NPCNWTGIACTH------LRTVTS 71

Query: 68  IDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGP 127
           +D +   L GT+SP + KLH LR LN+S N  SG PIP+ +     L  LDL    F G 
Sbjct: 72  VDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISG-PIPQDLSLCRSLEVLDLCTNRFHGV 130

Query: 128 IPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLH 187
           IP QL  +  L+ L L  NYLF +     + +LS L+ L +  +NL         + KL 
Sbjct: 131 IPIQLTMIITLKKLYLCENYLFGSIP-RQIGNLSSLQELVIYSNNLTGVIP--PSMAKLR 187

Query: 188 SLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLG 247
            L+ +         VIP   + ++   SL+ L L++N L  S+   L  + ++   + L 
Sbjct: 188 QLRIIRAGRNGFSGVIP---SEISGCESLKVLGLAENLLEGSLPKQLEKLQNL-TDLILW 243

Query: 248 FNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEII 307
            N+L G IP S  ++  LE L L  N   G IP+  G +  +  L L  N+L+G++   I
Sbjct: 244 QNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREI 303

Query: 308 QNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQL 367
            NL      ++ +  + EN LTG I +  F +I NLK LHL  N L              
Sbjct: 304 GNLI-----DAAEIDFSENQLTGFIPKE-FGHILNLKLLHLFENIL-------------- 343

Query: 368 IIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK 427
                    +GP  P+ L     +E LD+S   ++ TIP     L      L L  NQ++
Sbjct: 344 ---------LGP-IPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVD-LQLFDNQLE 392

Query: 428 GKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSS------FLNLSKNRFSGSISFLCS 481
           GK+P L   F ++   +D+S+N   G   P+P++         L+L  N+ SG+I     
Sbjct: 393 GKIPPLIG-FYSNFSVLDMSANSLSG---PIPAHFCRFQTLILLSLGSNKLSGNIPRDLK 448

Query: 482 ISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLH 541
              S LT + L  N L+G LP   +   +L  L L  N  SG I   +G L+N++ L L 
Sbjct: 449 TCKS-LTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLA 507

Query: 542 NNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ 601
           NN  TGE+     N +++   ++  N L G IP  +G  ++ +  L L  NKF G I  +
Sbjct: 508 NNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVT-IQRLDLSGNKFSGYIAQE 566

Query: 602 LCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTL 661
           L QL +L++L LS N ++G+IP  F + T + +                           
Sbjct: 567 LGQLVYLEILRLSDNRLTGEIPHSFGDLTRLME--------------------------- 599

Query: 662 GLVKSLELSNNNLNGAVPEEIMDLVGL-VALNLSKNHLTGQISPKIGQLKSLDFLDLSRN 720
                L+L  N L+  +P E+  L  L ++LN+S N+L+G I   +G L+ L+ L L+ N
Sbjct: 600 -----LQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDN 654

Query: 721 QLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCR 780
           +L G IP+S+  L  L + ++S NNL G +P     Q  + + +AGN  L        C 
Sbjct: 655 KLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGL--------CN 706

Query: 781 DEESAAGPGITEGRDDADTSEDEDQFITLGFYVSLILG--FIVGFWGVCGTLLR 832
            + S   P +       +   +  Q   +     +++G  F++ F G+C T+ R
Sbjct: 707 SQRSHCQPLVPHSDSKLNWLINGSQRQKILTITCIVIGSVFLITFLGLCWTIKR 760

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  262 bits (669), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 257/822 (31%), Positives = 383/822 (46%), Gaps = 109/822 (13%)

Query: 10  RCIDEEREALLTFKASLV-DESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVI---LLDL 65
           +  + E EAL +FK  +  D  GVLS W      R C  WTG+ C + T HV+   LL+ 
Sbjct: 25  QSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHC-NWTGITC-DSTGHVVSVSLLEK 82

Query: 66  QPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFA 125
           Q        L G +SPA+  L  L+ L+L+ N F+G  IP  IG L++L  L L+   F+
Sbjct: 83  Q--------LEGVLSPAIANLTYLQVLDLTSNSFTGK-IPAEIGKLTELNQLILYLNYFS 133

Query: 126 GPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGK 185
           G IP  +  L  + +LDL +N L                           S D  + I K
Sbjct: 134 GSIPSGIWELKNIFYLDLRNNLL---------------------------SGDVPEEICK 166

Query: 186 LHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISID 245
             SL  +      L   IP  L  L     L+  V + N+LT SI   +  ++++   +D
Sbjct: 167 TSSLVLIGFDYNNLTGKIPECLGDL---VHLQMFVAAGNHLTGSIPVSIGTLANL-TDLD 222

Query: 246 LGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSE 305
           L  NQL G IP  F +++ L+ L L+ N LEG IP   GN  SL+ L L +N+L+G++  
Sbjct: 223 LSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPA 282

Query: 306 IIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPP 364
            + NL        L++L + +N LT  I  S F  ++ L  L L+ N LV  +S +    
Sbjct: 283 ELGNLVQ------LQALRIYKNKLTSSIPSSLF-RLTQLTHLGLSENHLVGPISEEIGFL 335

Query: 365 FQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSN---------- 414
             L +++L S      FP+ +     + +L +    IS  +P     L+N          
Sbjct: 336 ESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNL 395

Query: 415 -------------KFSFLDLASNQIKGKLPNLSSRFGTSN-PGIDISSNHFEGLIPPLP- 459
                            LDL+ NQ+ G++P     FG  N   I I  NHF G IP    
Sbjct: 396 LTGPIPSSISNCTGLKLLDLSHNQMTGEIPR---GFGRMNLTFISIGRNHFTGEIPDDIF 452

Query: 460 --SNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLE 517
             SN   L+++ N  +G++  L      KL  + +S N L+G +P        L IL L 
Sbjct: 453 NCSNLETLSVADNNLTGTLKPLIG-KLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLH 511

Query: 518 NNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWM 577
           +N F+GRIP  M  L  +Q L +++N L G +     +   L +LDL  N   G+IP   
Sbjct: 512 SNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALF 571

Query: 578 GESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP----------KCFN 627
            + L +L  LSL+ NKF+G IP  L  L+ L   D+S N ++G IP          + + 
Sbjct: 572 SK-LESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYL 630

Query: 628 NF-----TAMTQERSSDPTIKDKLMLT---WKGSEREYRSTLGLVKSLELSNNNLNGAVP 679
           NF     T    +      +  ++ L+   + GS          V +L+ S NNL+G +P
Sbjct: 631 NFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIP 690

Query: 680 EEI---MDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGL 736
           +E+   MD++  ++LNLS+N  +G+I    G +  L  LDLS N L G IP SL+ LS L
Sbjct: 691 DEVFQGMDMI--ISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTL 748

Query: 737 SVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNK 778
             + L+ NNL G +P     ++ N +   GN +LCG   P K
Sbjct: 749 KHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLK 790

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  252 bits (644), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 269/873 (30%), Positives = 399/873 (45%), Gaps = 123/873 (14%)

Query: 12  IDEEREALLTFKASLV---DESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPI 68
           I+ + + LL  K SLV    E   L  W  ++   + C WTG+ C N      L  +  +
Sbjct: 23  INNDLQTLLEVKKSLVTNPQEDDPLRQWNSDN--INYCSWTGVTCDNTG----LFRVIAL 76

Query: 69  DFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPI 128
           +     L G+ISP   +  +L HL+LS N+  G PIP  + +L+ L  L LF     G I
Sbjct: 77  NLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVG-PIPTALSNLTSLESLFLFSNQLTGEI 135

Query: 129 PPQLGNLSRLQHLDLGSNYLFSTGNL-DWLSHLSYLRYLNLDESNLANSSDWFQVIGKLH 187
           P QLG+L  ++ L +G N L   G++ + L +L  L+ L L    L         +G+L 
Sbjct: 136 PSQLGSLVNIRSLRIGDNEL--VGDIPETLGNLVNLQMLALASCRLTGPIP--SQLGRLV 191

Query: 188 SLKTLSLHSCYLPPVIPLSL-------------NHLNSS--------TSLETLVLSDNNL 226
            +++L L   YL   IP  L             N LN +         +LE L L++N+L
Sbjct: 192 RVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSL 251

Query: 227 TSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNM 286
           T  I   L  +S +   + L  NQLQG IP+S   +  L+ L LS N L G IP+ F NM
Sbjct: 252 TGEIPSQLGEMSQLQY-LSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNM 310

Query: 287 CSLITLNLSNNKLSGQLSEII----QNLSSGCLE---------------NSLKSLYLEN- 326
             L+ L L+NN LSG L + I     NL    L                 SLK L L N 
Sbjct: 311 SQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNN 370

Query: 327 SLTGVISESFF-----------------------SNISNLKELHLANNPLVLKLSHDWVP 363
           SL G I E+ F                       SN++NL+ L L +N L  KL  +   
Sbjct: 371 SLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISA 430

Query: 364 PFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLS---------- 413
             +L ++ L   +     P+ +     ++++D+        IP     L           
Sbjct: 431 LRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQN 490

Query: 414 -------------NKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIP-PLP 459
                        ++ + LDLA NQ+ G +P+ S  F      + + +N  +G +P  L 
Sbjct: 491 ELVGGLPASLGNCHQLNILDLADNQLSGSIPS-SFGFLKGLEQLMLYNNSLQGNLPDSLI 549

Query: 460 S--NSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLE 517
           S  N + +NLS NR +G+I  LC  S S L++ D+++N    ++P       +L  L L 
Sbjct: 550 SLRNLTRINLSHNRLNGTIHPLCG-SSSYLSF-DVTNNGFEDEIPLELGNSQNLDRLRLG 607

Query: 518 NNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWM 577
            N  +G+IP ++G ++ +  L + +N LTG +      C +L  +DL  N L G IP W+
Sbjct: 608 KNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWL 667

Query: 578 GESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS 637
           G+ LS L  L L SN+F   +P +L     L VL L  N+++G IP+   N  A+     
Sbjct: 668 GK-LSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALN---- 722

Query: 638 SDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLV-ALNLSKN 696
               + +     + GS  +    L  +  L LS N+L G +P EI  L  L  AL+LS N
Sbjct: 723 ----VLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYN 778

Query: 697 HLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQL 756
           + TG I   IG L  L+ LDLS NQL G +P S+  +  L  +++S+NNL GK+    Q 
Sbjct: 779 NFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLK--KQF 836

Query: 757 QSFNDTVYAGNPELCGLPLP--NKCRDEESAAG 787
             +    + GN  LCG PL   N+ R      G
Sbjct: 837 SRWPADSFLGNTGLCGSPLSRCNRVRSNNKQQG 869

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  242 bits (617), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 237/771 (30%), Positives = 355/771 (46%), Gaps = 91/771 (11%)

Query: 15  EREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFP 74
           E + LL  K+  VD    L +W   D     C WTG+ CSN ++   +L L   +  S  
Sbjct: 30  EGQYLLEIKSKFVDAKQNLRNWNSNDSVP--CGWTGVMCSNYSSDPEVLSL---NLSSMV 84

Query: 75  LRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGN 134
           L G +SP++  L  L+ L+LS+N  SG  IP+ IG+ S L  L L    F G IP ++G 
Sbjct: 85  LSGKLSPSIGGLVHLKQLDLSYNGLSGK-IPKEIGNCSSLEILKLNNNQFDGEIPVEIGK 143

Query: 135 LSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSL 194
           L  L++L + +N +  +  ++                           IG L SL  L  
Sbjct: 144 LVSLENLIIYNNRISGSLPVE---------------------------IGNLLSLSQLVT 176

Query: 195 HSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGS 254
           +S  +   +P S+ +L   TS      +  N+ S   P         + + L  NQL G 
Sbjct: 177 YSNNISGQLPRSIGNLKRLTSFR----AGQNMISGSLPSEIGGCESLVMLGLAQNQLSGE 232

Query: 255 IPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGC 314
           +P+    +  L  + L  NE  G IP+   N  SL TL L  N+L G + + + +L    
Sbjct: 233 LPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDL---- 288

Query: 315 LENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS 373
              SL+ LYL  N L G I      N+S   E+  + N L  ++                
Sbjct: 289 --QSLEFLYLYRNGLNGTIPREI-GNLSYAIEIDFSENALTGEI---------------- 329

Query: 374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNL 433
                   P  L     +ELL +    ++ TIP     L N  S LDL+ N + G +P L
Sbjct: 330 --------PLELGNIEGLELLYLFENQLTGTIPVELSTLKN-LSKLDLSINALTGPIP-L 379

Query: 434 SSRFGTSNPGIDISSNHFEGLIPPL---PSNSSFLNLSKNRFSGSI-SFLCSISGSKLTY 489
             ++      + +  N   G IPP     S+   L++S N  SG I S+LC    S +  
Sbjct: 380 GFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCL--HSNMII 437

Query: 490 VDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGEL 549
           ++L +N LSG +P    T  +LV L L  N+  GR P ++    N+  + L  NR  G +
Sbjct: 438 LNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSI 497

Query: 550 SSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQ 609
                NCS L+ L L  N   GE+P  +G  LS L  L++ SNK  G++P ++     LQ
Sbjct: 498 PREVGNCSALQRLQLADNGFTGELPREIG-MLSQLGTLNISSNKLTGEVPSEIFNCKMLQ 556

Query: 610 VLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLEL 669
            LD+  NN SG +P    +   +   + S+  +   + +      R        +  L++
Sbjct: 557 RLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSR--------LTELQM 608

Query: 670 SNNNLNGAVPEEIMDLVGL-VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPS 728
             N  NG++P E+  L GL +ALNLS N LTG+I P++  L  L+FL L+ N L G IPS
Sbjct: 609 GGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPS 668

Query: 729 SLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKC 779
           S + LS L   + SYN+L+G IP    L++ + + + GN  LCG PL N+C
Sbjct: 669 SFANLSSLLGYNFSYNSLTGPIPL---LRNISMSSFIGNEGLCGPPL-NQC 715

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  238 bits (607), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 245/816 (30%), Positives = 363/816 (44%), Gaps = 145/816 (17%)

Query: 15  EREALLTFKASLVDESGVLSSW---GPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFD 71
           E  ALL +K++  + S  LSSW      +    C  W G+ C+++ +      ++ ++  
Sbjct: 33  EANALLKWKSTFTNSSK-LSSWVHDANTNTSFSCTSWYGVSCNSRGS------IEELNLT 85

Query: 72  SFPLRGTISP-ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPP 130
           +  + GT      + L +L +++LS N  SG+  P+F G+LSKL Y DL      G I P
Sbjct: 86  NTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQF-GNLSKLIYFDLSTNHLTGEISP 144

Query: 131 QLGNLSRLQHLDLGSNYLFST-----GNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGK 185
            LGNL  L  L L  NYL S      GN++ ++ L+      L ++ L  S      +G 
Sbjct: 145 SLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLA------LSQNKLTGSIP--SSLGN 196

Query: 186 LHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLE---------------------TLVLSDN 224
           L +L  L L+  YL  VIP  L ++ S T L                       L L +N
Sbjct: 197 LKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYEN 256

Query: 225 NLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFG 284
            LT  I P + N+ S+  ++ L  N+L GSIP S  ++  L  L L  N L GGIP   G
Sbjct: 257 YLTGVIPPEIGNMESM-TNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLG 315

Query: 285 NMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNL 343
           N+ S+I L LSNNKL+G +   + NL +      L  LYL EN LTGVI      N+ ++
Sbjct: 316 NIESMIDLELSNNKLTGSIPSSLGNLKN------LTILYLYENYLTGVIPPEL-GNMESM 368

Query: 344 KELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISD 403
            +L L NN L   +   +     L  + L    +    P+ L     +  LD+S   ++ 
Sbjct: 369 IDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTG 428

Query: 404 TIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSS 463
           ++PD F N +               KL +L  R            NH  G IPP  +NSS
Sbjct: 429 SVPDSFGNFT---------------KLESLYLRV-----------NHLSGAIPPGVANSS 462

Query: 464 FLN---LSKNRFSGSI-SFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENN 519
            L    L  N F+G     +C   G KL  + L  N L G +P       SL+      N
Sbjct: 463 HLTTLILDTNNFTGFFPETVCK--GRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGN 520

Query: 520 SFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFR------------------------N 555
            F+G I ++ G   ++  +   +N+  GE+SS++                         N
Sbjct: 521 KFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWN 580

Query: 556 CSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSL 615
            +QL  LDL  N L+GE+P  +G +L+NL  L L  N+  G++P  L  L  L+ LDLS 
Sbjct: 581 MTQLVELDLSTNNLFGELPEAIG-NLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSS 639

Query: 616 NNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN 675
           NN S +IP+ F++F  +                                  + LS N  +
Sbjct: 640 NNFSSEIPQTFDSFLKL--------------------------------HDMNLSRNKFD 667

Query: 676 GAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSG 735
           G++P  +  L  L  L+LS N L G+I  ++  L+SLD LDLS N L G IP++   +  
Sbjct: 668 GSIPR-LSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIA 726

Query: 736 LSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELC 771
           L+ +D+S N L G +P     +         N  LC
Sbjct: 727 LTNVDISNNKLEGPLPDTPTFRKATADALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  236 bits (603), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 243/754 (32%), Positives = 360/754 (47%), Gaps = 70/754 (9%)

Query: 62  LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG 121
           L++L+ +      L GTI      L +L+ L L+    +G  IP   G L +L+ L L  
Sbjct: 143 LVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGL-IPSRFGRLVQLQTLILQD 201

Query: 122 TVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDW-LSHLSYLRYLNLDESNLANSSDWF 180
               GPIP ++GN + L       N L   G+L   L+ L  L+ LNL +++   S +  
Sbjct: 202 NELEGPIPAEIGNCTSLALFAAAFNRL--NGSLPAELNRLKNLQTLNLGDNSF--SGEIP 257

Query: 181 QVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYP--WLPNIS 238
             +G L S++ L+L    L  +IP  L  L    +L+TL LS NNLT  I+   W  N  
Sbjct: 258 SQLGDLVSIQYLNLIGNQLQGLIPKRLTEL---ANLQTLDLSSNNLTGVIHEEFWRMNQL 314

Query: 239 SIFISIDLGFNQLQGSIPESF-QHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNN 297
              +   L  N+L GS+P++   +   L+ L LS  +L G IP    N  SL  L+LSNN
Sbjct: 315 EFLV---LAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNN 371

Query: 298 KLSGQLSEIIQNLSSGCLENSLKSLYLEN-SLTGVISESFFSNISNLKELHLANNPLVLK 356
            L+GQ+ + +  L        L +LYL N SL G +S S  SN++NL+E  L +N L  K
Sbjct: 372 TLTGQIPDSLFQLVE------LTNLYLNNNSLEGTLSSSI-SNLTNLQEFTLYHNNLEGK 424

Query: 357 LSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSN-- 414
           +  +     +L I+ L   +     P  +    +++ +D     +S  IP     L +  
Sbjct: 425 VPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLT 484

Query: 415 ---------------------KFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEG 453
                                + + +DLA NQ+ G +P+ S  F T+     I +N  +G
Sbjct: 485 RLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPS-SFGFLTALELFMIYNNSLQG 543

Query: 454 LIPPLP---SNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDS 510
            +P       N + +N S N+F+GSIS LC  S S L++ D++ N   G +P       +
Sbjct: 544 NLPDSLINLKNLTRINFSSNKFNGSISPLCG-SSSYLSF-DVTENGFEGDIPLELGKSTN 601

Query: 511 LVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALY 570
           L  L L  N F+GRIP + G +  +  L +  N L+G +      C +L  +DL  N L 
Sbjct: 602 LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLS 661

Query: 571 GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFT 630
           G IPTW+G+ L  L  L L SNKF G +P ++  L  +  L L  N+++G IP+   N  
Sbjct: 662 GVIPTWLGK-LPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQ 720

Query: 631 AMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL---ELSNNNLNGAVPEEIMDLVG 687
           A+      +  +   L            ST+G +  L    LS N L G +P EI  L  
Sbjct: 721 ALNALNLEENQLSGPL-----------PSTIGKLSKLFELRLSRNALTGEIPVEIGQLQD 769

Query: 688 L-VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746
           L  AL+LS N+ TG+I   I  L  L+ LDLS NQLVG +P  +  +  L  ++LSYNNL
Sbjct: 770 LQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNL 829

Query: 747 SGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCR 780
            GK+    Q   +    + GN  LCG PL +  R
Sbjct: 830 EGKLK--KQFSRWQADAFVGNAGLCGSPLSHCNR 861

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  231 bits (588), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 214/659 (32%), Positives = 300/659 (45%), Gaps = 107/659 (16%)

Query: 212 SSTSLETLVLSDNNLTSSIYPWLPNISSI--FISIDLGFNQLQGSIPESFQHMVYLEHLR 269
           SS  L+TL LS NN+T  I      +SS      +D   N + G I +S  +   L+ L 
Sbjct: 175 SSKKLQTLDLSYNNITGPISGLTIPLSSCVSMTYLDFSGNSISGYISDSLINCTNLKSLN 234

Query: 270 LSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLE-NSL 328
           LS+N  +G IPK FG +  L +L+LS+N+L+G +   I     G    SL++L L  N+ 
Sbjct: 235 LSYNNFDGQIPKSFGELKLLQSLDLSHNRLTGWIPPEI-----GDTCRSLQNLRLSYNNF 289

Query: 329 TGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQ 388
           TGVI ES                                    LSSC        WLQ+ 
Sbjct: 290 TGVIPES------------------------------------LSSCS-------WLQS- 305

Query: 389 NQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISS 448
                LD+SN  IS   P+           L L++N I G  P   S   +     D SS
Sbjct: 306 -----LDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIA-DFSS 359

Query: 449 NHFEGLIPP--LPSNSSF--LNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDC 504
           N F G+IPP   P  +S   L L  N  +G I    S   S+L  +DLS N L+G +P  
Sbjct: 360 NRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAIS-QCSELRTIDLSLNYLNGTIPPE 418

Query: 505 WWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564
                 L       N+ +G IP  +G LQN++ L L+NN+LTGE+   F NCS +  +  
Sbjct: 419 IGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNIEWVSF 478

Query: 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK 624
             N L GE+P   G  LS L VL L +N F G+IP +L +   L  LDL+ N+++G+IP 
Sbjct: 479 TSNRLTGEVPKDFG-ILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPP 537

Query: 625 CFNN----------------------------------FTAMTQERSSD-PTIKD-KLML 648
                                                 F+ +  ER    P++K      
Sbjct: 538 RLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTR 597

Query: 649 TWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQ 708
            + G      +    ++ L+LS N L G +P+EI +++ L  L LS N L+G+I   IGQ
Sbjct: 598 MYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQ 657

Query: 709 LKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNP 768
           LK+L   D S N+L G IP S S LS L  +DLS N L+G IP   QL +   T YA NP
Sbjct: 658 LKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYANNP 717

Query: 769 ELCGLPLPNKCRDEESAAGPGITEGRDDADTSEDEDQFITLGFYVSLILGFIVGFWGVC 827
            LCG+PLP +C++  +    G  EG+     +          +  S++LG ++    VC
Sbjct: 718 GLCGVPLP-ECKNGNNQLPAGTEEGKRAKHGTR------AASWANSIVLGVLISAASVC 769

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  227 bits (579), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 246/809 (30%), Positives = 364/809 (44%), Gaps = 115/809 (14%)

Query: 15  EREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFP 74
           E +AL  FK +L D  G L+SW P      C  W G+ C   TNH +      I      
Sbjct: 28  EIDALTAFKLNLHDPLGALTSWDPSTPAAPC-DWRGVGC---TNHRV----TEIRLPRLQ 79

Query: 75  LRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGN 134
           L G IS  +  L  LR L+L  N F+G+ IP  +   ++L  + L     +G +PP + N
Sbjct: 80  LSGRISDRISGLRMLRKLSLRSNSFNGT-IPTSLAYCTRLLSVFLQYNSLSGKLPPAMRN 138

Query: 135 LSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSL 194
           L+ L+  ++  N L  +G +                            +G   SL+ L +
Sbjct: 139 LTSLEVFNVAGNRL--SGEIP---------------------------VGLPSSLQFLDI 169

Query: 195 HSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI-FISIDLGFNQLQG 253
            S      IP   + L + T L+ L LS N LT  I   L N+ S+ ++ +D  FN LQG
Sbjct: 170 SSNTFSGQIP---SGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLD--FNLLQG 224

Query: 254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSG 313
           ++P +  +   L HL  S NE+ G IP  +G +  L  L+LSNN  SG +          
Sbjct: 225 TLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVP--------- 275

Query: 314 CLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS 373
                  SL+   SLT  I +  F+  S++       N               L ++ L 
Sbjct: 276 ------FSLFCNTSLT--IVQLGFNAFSDIVRPETTANCRT-----------GLQVLDLQ 316

Query: 374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNL 433
             +I   FP WL     ++ LD+S    S  IP    NL  +   L LA+N + G++P  
Sbjct: 317 ENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNL-KRLEELKLANNSLTGEIPVE 375

Query: 434 SSRFGTSNPGIDISSNHFEGLIPPL---PSNSSFLNLSKNRFSGSISFLCSISGSKLTYV 490
             + G+ +  +D   N  +G IP           L+L +N FSG +     ++  +L  +
Sbjct: 376 IKQCGSLDV-LDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPS-SMVNLQQLERL 433

Query: 491 DLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELS 550
           +L  N L+G  P       SL  L+L  N FSG +P S+  L N+  L+L  N  +GE+ 
Sbjct: 434 NLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIP 493

Query: 551 SSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQV 610
           +S  N  +L  LDL K  + GE+P  +   L N+ V++L+ N F G +P     L  L+ 
Sbjct: 494 ASVGNLFKLTALDLSKQNMSGEVPVEL-SGLPNVQVIALQGNNFSGVVPEGFSSLVSLRY 552

Query: 611 LDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELS 670
           ++LS N+ SG+IP+ F     +     SD  I         GS          ++ LEL 
Sbjct: 553 VNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHIS--------GSIPPEIGNCSALEVLELR 604

Query: 671 NNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSL 730
           +N L G +P ++  L  L  L+L +N+L+G+I P+I Q  SL+ L L  N L G IP S 
Sbjct: 605 SNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSF 664

Query: 731 SQLSGLSVMDLSYNNLSGKIPTVTQLQSF-------------------------NDTVYA 765
           S LS L+ MDLS NNL+G+IP    L S                          N + ++
Sbjct: 665 SGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFS 724

Query: 766 GNPELCGLPLPNKCRDEESAAGPGITEGR 794
           GN ELCG PL  +C   ES+   G  + R
Sbjct: 725 GNTELCGKPLNRRC---ESSTAEGKKKKR 750

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  224 bits (571), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 219/749 (29%), Positives = 341/749 (45%), Gaps = 88/749 (11%)

Query: 33  LSSWGPEDEKRDCCKWTGLRCSNKTNHVIL--LDLQPIDFDSFPLRGTISPALLKLHDLR 90
           L +W   DE    C W G+ CS++ +      L +  +D  S  L G +SP++  L +L 
Sbjct: 55  LHNWNGIDETP--CNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLV 112

Query: 91  HLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFS 150
           +LNL++N  +G  IP  IG+ SKL  + L    F G IP ++  LS+L+  ++ +N L  
Sbjct: 113 YLNLAYNALTGD-IPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKL-- 169

Query: 151 TGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHL 210
                                    S    + IG L++L+ L  ++  L   +P SL +L
Sbjct: 170 -------------------------SGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNL 204

Query: 211 NSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRL 270
           N    L T     N+ + +I   +    ++ + + L  N + G +P+    +V L+ + L
Sbjct: 205 NK---LTTFRAGQNDFSGNIPTEIGKCLNLKL-LGLAQNFISGELPKEIGMLVKLQEVIL 260

Query: 271 SFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLT 329
             N+  G IPK  GN+ SL TL L  N L G +   I N+ S      LK LYL +N L 
Sbjct: 261 WQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKS------LKKLYLYQNQLN 314

Query: 330 GVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQN 389
           G I +     +S + E+  + N L  ++  +     +L ++ L   K+    P  L    
Sbjct: 315 GTIPKEL-GKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLR 373

Query: 390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNP--GIDIS 447
            +  LD+S   ++  IP  F NL++    L L  N + G +P      G  +P   +D S
Sbjct: 374 NLAKLDLSINSLTGPIPPGFQNLTS-MRQLQLFHNSLSGVIP---QGLGLYSPLWVVDFS 429

Query: 448 SNHFEGLIPPL---PSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDC 504
            N   G IPP     SN   LNL  NR  G+I     +    L  + +  N L+G+ P  
Sbjct: 430 ENQLSGKIPPFICQQSNLILLNLGSNRIFGNIP-PGVLRCKSLLQLRVVGNRLTGQFPTE 488

Query: 505 WWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564
                +L  + L+ N FSG +P  +G  Q +Q L L  N+ +  L +     S L   ++
Sbjct: 489 LCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNV 548

Query: 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK 624
             N+L G IP+ +  +   L  L L  N F G +P +L  L  L++L LS N  SG IP 
Sbjct: 549 SSNSLTGPIPSEIA-NCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPF 607

Query: 625 CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD 684
              N T +T+                                L++  N  +G++P ++  
Sbjct: 608 TIGNLTHLTE--------------------------------LQMGGNLFSGSIPPQLGL 635

Query: 685 LVGL-VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY 743
           L  L +A+NLS N  +G+I P+IG L  L +L L+ N L G IP++   LS L   + SY
Sbjct: 636 LSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSY 695

Query: 744 NNLSGKIPTVTQLQSFNDTVYAGNPELCG 772
           NNL+G++P     Q+   T + GN  LCG
Sbjct: 696 NNLTGQLPHTQIFQNMTLTSFLGNKGLCG 724

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	833
225464712	1021	PREDICTED: receptor-like protein 12-like	0.975	0.796	0.478	0.0
224105895	963	predicted protein [Populus trichocarpa]	0.977	0.845	0.479	0.0
225462661	1485	PREDICTED: LRR receptor-like serine/thre	0.954	0.535	0.454	0.0
359490576	972	PREDICTED: LRR receptor-like serine/thre	0.959	0.822	0.456	0.0
359489995	867	PREDICTED: probable LRR receptor-like se	0.920	0.884	0.458	0.0
147807651	971	hypothetical protein VITISV_018647 [Viti	0.954	0.818	0.448	0.0
359490572	975	PREDICTED: probable LRR receptor-like se	0.975	0.833	0.439	0.0
224115848	884	predicted protein [Populus trichocarpa]	0.973	0.917	0.466	0.0
359490560	1010	PREDICTED: LRR receptor-like serine/thre	0.963	0.795	0.435	0.0
225466147	1024	PREDICTED: LRR receptor-like serine/thre	0.971	0.790	0.440	0.0

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/957 (47%), Positives = 587/957 (61%), Gaps = 144/957 (15%)

Query: 11   CIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDF 70
            C+++ER+ALL FK  LVD+ G+LSSWG E+++RDCCKW G++CSN+T+HVI+LDL  +  
Sbjct: 52   CVEKERQALLDFKQGLVDDFGILSSWGNEEDRRDCCKWRGVQCSNRTSHVIMLDLHALPT 111

Query: 71   DSF----PLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAG 126
            D+      LRG IS +LL+L  L HL+LS NDF GS +PEFIG  SKLRYL+L     AG
Sbjct: 112  DTVHKYQSLRGRISSSLLELQHLNHLDLSLNDFQGSYVPEFIGLFSKLRYLNLSEARLAG 171

Query: 127  PIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKL 186
             IP  LGNLS L  LDL  NY  S+  L+WLS LS LR+L+L   NL  +  W  VI +L
Sbjct: 172  MIPSHLGNLSNLHFLDLSRNYGMSSETLEWLSRLSSLRHLDLSGLNLDKAIYWEHVINRL 231

Query: 187  HSLKTLSLHSCYLPPVI-PLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISID 245
             SL  L LH   LP +I P +L++ NSS SL  L LS N L+SS+YPWL N+SS  + +D
Sbjct: 232  PSLTDLLLHDSALPQIITPSALSYTNSSKSLVVLDLSWNFLSSSVYPWLFNLSSSLVHLD 291

Query: 246  LGFNQLQG-----------------------------------------------SIPES 258
            L  NQ+QG                                               SIP++
Sbjct: 292  LSINQIQGLIPDTFGEMVSLEYLDLFFNQLEGEIPQSLTSTSLVHLDLSVNHLHGSIPDT 351

Query: 259  FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENS 318
            F HM  L +L LS N+LEGGIPK F N+CSL  + L +N L+ QL E +QN S  C +++
Sbjct: 352  FGHMTSLSYLDLSLNQLEGGIPKSFKNLCSLQMVMLLSNSLTAQLPEFVQN-SLSCSKDT 410

Query: 319  LKSLYLE------------------------------------------------NSLTG 330
            L+ L L                                                 NSL G
Sbjct: 411  LEVLVLSWNQFTGSFPNFTGFSVLGHLYIDHNRLNGTFPEHIGQLSQLEVLEISGNSLHG 470

Query: 331  VISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQ 390
             I+E+  S++S L  L L++N L L+LS +W PPFQ+  + L SCK+GP+FP WLQTQ  
Sbjct: 471  NITEAHLSSLSKLYWLDLSSNSLALELSPEWTPPFQVGYLGLLSCKMGPNFPGWLQTQKD 530

Query: 391  IELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNH 450
            +  LDISN+ ISD IP WFWNL++K   L +A+NQI+G++P+L  R  T+   ID+S N 
Sbjct: 531  LFSLDISNSSISDVIPSWFWNLTSKLIKLRIANNQIRGRVPSL--RMETA-AVIDLSLNR 587

Query: 451  FEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTF-D 509
            FEG IP LPS    L+LSKN FSGSIS LC+I    L+Y+DLS NLLSG LPDCW  + D
Sbjct: 588  FEGPIPSLPSGVRVLSLSKNLFSGSISLLCTIVDGALSYLDLSDNLLSGALPDCWQQWRD 647

Query: 510  SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNAL 569
             L ILNL NN+FSG++P S+G L  +QTL L+NN   GEL SS  NC++LRL+D+GKN  
Sbjct: 648  QLQILNLANNNFSGKLPYSLGSLAALQTLHLYNNGFLGELPSSLMNCTKLRLVDMGKNRF 707

Query: 570  YGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNF 629
             GEIPTW+GE LS+L+VLSL+SN+FHG I   +C L  LQ+LD S NNISG IP+C NNF
Sbjct: 708  SGEIPTWIGERLSDLVVLSLRSNEFHGSISSDICLLKELQILDFSRNNISGTIPRCLNNF 767

Query: 630  TAMTQERSSDPTIKDKLMLT-----------------------------------WKGSE 654
            TAM Q+        D L L+                                   WKG E
Sbjct: 768  TAMAQKMIYSVIAHDYLALSIVPRGRNNLGITPRWAYSSGSFDTIARYVDSALIPWKGGE 827

Query: 655  REYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDF 714
             EY++ LGLV+S++LS+N L+G +P+EI  L+ L++LNLS+NHL GQI   IGQLKSLD 
Sbjct: 828  FEYKNILGLVRSIDLSSNKLSGEIPKEITKLMELISLNLSRNHLNGQIPSMIGQLKSLDV 887

Query: 715  LDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLP 774
            LDLS+NQL G IPSSLSQ+  LSV+DLS NNLSG+IP+ TQLQ F  + Y GNPELCG P
Sbjct: 888  LDLSKNQLDGKIPSSLSQIDRLSVLDLSSNNLSGQIPSGTQLQGFEASSYMGNPELCGSP 947

Query: 775  LPNKCRDEESAAGPGITEGRDDADTSEDEDQFITLGFYVSLILGFIVGFWGVCGTLL 831
            L  KC+++E+A     ++G +D D  +DE       FYVS+ LGF+VGFWGV GTL+
Sbjct: 948  LKTKCQEDETAQTSPTSDGNED-DLQDDE---FDPWFYVSIALGFLVGFWGVWGTLV 1000

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/899 (47%), Positives = 568/899 (63%), Gaps = 85/899 (9%)

Query: 9   IRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQ-- 66
           I CI+ ER+ALL FK  ++DE GVLSSWG E+EKRDCCKW G+ C N T HV  L+L   
Sbjct: 30  IGCIERERQALLKFKEDIIDEDGVLSSWGGEEEKRDCCKWRGVGCDNITGHVTSLNLHSS 89

Query: 67  PIDFDSF-PLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFA 125
           P+    F PL G +S +LL+L  L +L+LS N+   S I +FIGSLS LRYL+L   +F 
Sbjct: 90  PLYEHHFTPLTGKVSNSLLELQHLNYLDLSLNNLDES-IMDFIGSLSSLRYLNLSYNLFT 148

Query: 126 GPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGK 185
             IP  L NLSRLQ LDL  ++  S  NL WLSHLS L +L+L  S+L+  +DW QV+  
Sbjct: 149 VTIPYHLRNLSRLQSLDLSYSFDASVENLGWLSHLSSLEHLDLSGSDLSKVNDWLQVVTN 208

Query: 186 LHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISID 245
           L  LK L L+ C L  +IP  L+ +NSS  L  L LS+NNL+S+IYPWL N+S+    +D
Sbjct: 209 LPRLKDLRLNQCSLTDIIPSPLSFMNSSKFLAVLHLSNNNLSSAIYPWLYNLSNSLADLD 268

Query: 246 LGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSE 305
           L  NQLQG +P+ F+ M  L +L LS N+LEGGIP+  G MCSL TL+L +N L+G+LS+
Sbjct: 269 LSGNQLQGLVPDGFRKMSALTNLVLSRNQLEGGIPRSLGEMCSLHTLDLCHNNLTGELSD 328

Query: 306 IIQNLSSGCLENSLKSLYL----------------------------------------- 324
           + +NL  G  E+SL+ L L                                         
Sbjct: 329 LTRNLY-GRTESSLEILRLCQNQLRGSLTDIARFSSLRELDISNNQLNGSIPESIGFLSK 387

Query: 325 -------ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKI 377
                   NSL G++S   FSN+S LK L L+ N LVL+   DW P FQL  I LSSC +
Sbjct: 388 LDYFDVSFNSLQGLVSGGHFSNLSKLKHLDLSYNSLVLRFKSDWDPAFQLKNIHLSSCHL 447

Query: 378 GPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRF 437
           GP FPKWL+TQ ++ LLDIS+  ISDT+P+WFWNL  K +FL+++ N ++G LP+ SS  
Sbjct: 448 GPCFPKWLRTQIKVRLLDISSASISDTVPNWFWNLLPKLAFLNISHNLMRGTLPDFSSVD 507

Query: 438 GTSN--PGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSN 495
              +  PG D+S N FEGL+P  P N++ L LS N FSG IS +C+I G  L+++DLS+N
Sbjct: 508 AVDDTFPGFDLSFNRFEGLLPAFPFNTASLILSNNLFSGPISLICNIVGKDLSFLDLSNN 567

Query: 496 LLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRN 555
           LL+G+LP+C+  + +LV+LNL NN+ SG IP S+G L ++QTLSL+ N L GEL  S +N
Sbjct: 568 LLTGQLPNCFMNWSTLVVLNLANNNLSGEIPSSVGSLFSLQTLSLNKNSLYGELPMSLKN 627

Query: 556 CSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSL 615
           CS L+ LDL +N L GEIP W+GESLS+L+ LSLKSN+F G IP  LCQL  L++LDLS 
Sbjct: 628 CSMLKFLDLSRNQLSGEIPAWIGESLSSLMFLSLKSNEFIGSIPLHLCQLTNLRILDLSQ 687

Query: 616 NNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLT--------------------WKGSER 655
           N ISG IPKC NN T M  +  ++ TI D L LT                    WKG + 
Sbjct: 688 NTISGAIPKCLNNLTTMVLKGEAE-TIIDNLYLTSMRCGAIFSGRYYINKAWVGWKGRDY 746

Query: 656 EYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFL 715
           EY   LGL++ ++ + NNL+G +PEEI  L+GLVALNLS+N+LTG I   IG LKSL+ L
Sbjct: 747 EYERYLGLLRVIDFAGNNLSGEIPEEITGLLGLVALNLSRNNLTGVIPQTIGLLKSLESL 806

Query: 716 DLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPL 775
           DLS NQ  G IP ++  L+ LS +++SYNNLSG+IP+ TQLQSF+ + + GNP LCGLP+
Sbjct: 807 DLSGNQFSGAIPVTMGDLNFLSYLNVSYNNLSGQIPSSTQLQSFDASAFIGNPALCGLPV 866

Query: 776 PNKCRDEE---SAAGPGITEGRDDADTSEDEDQFITLGFYVSLILGFIVGFWGVCGTLL 831
            NKC   +   +    G+ +     D  E   +F +  F  ++ +GF V FWGV G LL
Sbjct: 867 TNKCLGGDLPRNLVMNGVIQ-----DNQETVHEF-SAWFCTAMGIGFSVFFWGVSGALL 919

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462661|ref|XP_002266475.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/936 (45%), Positives = 561/936 (59%), Gaps = 141/936 (15%)

Query: 2   RVADSNIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVI 61
           RV D+ +  CI+ ER+ALL FK  +VD+ G+LSSWG  ++KRDCCKW G+ C+N+T HVI
Sbjct: 28  RVGDAKV-GCIERERQALLHFKQGVVDDYGMLSSWGNGEDKRDCCKWRGVECNNQTGHVI 86

Query: 62  LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG 121
           +LDL         L G I P+L KL  L+HLNLS+NDF                      
Sbjct: 87  MLDLS-----GGYLGGKIGPSLAKLQHLKHLNLSWNDFE--------------------- 120

Query: 122 TVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQ 181
               G +P QLGNLS LQ LDL  N   + GNLDWLSHL  L +L+L   NL+ +  W Q
Sbjct: 121 --VTGILPTQLGNLSNLQSLDLRYNRDMTCGNLDWLSHLHLLTHLDLSFVNLSKAIHWPQ 178

Query: 182 VIGKLHSLKTLSLHSCYLPPVIP-LSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI 240
            + K+ +L  L L +  LPP+ P +S++H+NSSTSL  L L +N+LTSSIYPWL N SS 
Sbjct: 179 AVKKMPALTELYLSNTQLPPIDPTISISHINSSTSLAVLELFENDLTSSIYPWLLNFSSC 238

Query: 241 FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPK------------------- 281
            + +DL  N L GSIP++F +M  L +L LSFN+LEG IPK                   
Sbjct: 239 LVHLDLSNNHLNGSIPDAFGNMTTLAYLDLSFNQLEGEIPKSFSINLVTLDLSWNHLHGS 298

Query: 282 ---FFGNMCSLITLNLSNNKLSG------------QLSEIIQNLSSGCLE---------- 316
               FGNM +L  L+ S N+L G            Q+  + QN  +G LE          
Sbjct: 299 IPDAFGNMATLAYLHFSGNQLEGEIPKSLRGLCDLQILSLSQNNLTGLLEKDFLACSNNT 358

Query: 317 ---------------------NSLKSLYLE-------------------------NSLTG 330
                                + L+ L+LE                         NSL G
Sbjct: 359 LEVLDLSHNQFKGSFPDLSGFSQLRELHLEFNQLNGTLPESIGQLAQLQVLSLRSNSLRG 418

Query: 331 VISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQ 390
            +S +    +S L +L L+ N L + +S + VP FQ I I L+SCK+GPHFP WL+TQ  
Sbjct: 419 TVSANHLFGLSKLWDLDLSFNSLTVNISLEQVPQFQAIEIKLASCKLGPHFPNWLRTQKH 478

Query: 391 IELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNH 450
           + +LDIS +GI++ +P+WFW  ++  S+ ++++N I G LPNL+S    S  G+DISSN 
Sbjct: 479 LSMLDISASGIANVLPNWFWKFTSHLSWFNISNNHISGTLPNLTSHL--SYLGMDISSNC 536

Query: 451 FEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSK---LTYVDLSSNLLSGKLPDCWWT 507
            EG IP    N+ +L+LSKN FSGSIS  C  +      L+++DLS+N LSG+LP C   
Sbjct: 537 LEGSIPQSLFNAQWLDLSKNMFSGSISLSCGTTNQSSWGLSHLDLSNNRLSGELPKCREQ 596

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
           +  L++LNL NN+FSG+I +S+G   ++QTL L NN LTG L  S +NC  LRLLDLGKN
Sbjct: 597 WKDLIVLNLANNNFSGKIKNSIGLSYHMQTLHLRNNSLTGALPWSLKNCRDLRLLDLGKN 656

Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
            L G+IP W+G SLSNLIV++L+SN+F+G IP  LCQL  + +LDLS NN+SG IPKC N
Sbjct: 657 KLSGKIPGWIGGSLSNLIVVNLRSNEFNGSIPLNLCQLKKIHMLDLSSNNLSGTIPKCLN 716

Query: 628 NFTAMTQERSSDPTIKDKL------------MLTWKGSEREYRSTLGLVKSLELSNNNLN 675
           N + M Q  S   T ++ L            ++ WKG E EY  TLGLVKS++ SNN L 
Sbjct: 717 NLSGMAQNGSLVITYEEDLLFLMSLSYYDNTLVQWKGKELEYNKTLGLVKSIDFSNNKLI 776

Query: 676 GAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSG 735
           G +P E+ DLV LV+LNLS+N+L G I   IGQLKSLD LDLSRN+L GGIP SLSQ++ 
Sbjct: 777 GEIPTEVTDLVELVSLNLSRNYLIGPIPLMIGQLKSLDSLDLSRNRLHGGIPISLSQIAR 836

Query: 736 LSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRD 795
           LSV+DLS N LSGKIP+ TQLQSFN + Y GNP LCG PL  KC+++E+      T   +
Sbjct: 837 LSVLDLSDNILSGKIPSGTQLQSFNASTYDGNPGLCGPPLLKKCQEDENRE-VSFTGLSN 895

Query: 796 DADTSEDEDQFITLGFYVSLILGFIVGFWGVCGTLL 831
           + D  +D +    + FY +++LGFI+GFWGVCGTLL
Sbjct: 896 EEDIQDDAN---NIWFYGNIVLGFIIGFWGVCGTLL 928

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/940 (45%), Positives = 554/940 (58%), Gaps = 141/940 (15%)

Query: 2   RVADSNIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVI 61
           RV D+ +  C + ER+ALL FK  +VD+ GVLSSWG  ++KRDCCKW G++C+N+T HVI
Sbjct: 27  RVGDAKV-GCRERERQALLHFKQGVVDDDGVLSSWGNGEDKRDCCKWRGVKCNNQTGHVI 85

Query: 62  LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG 121
            LDL      +  L G I P+L +L  L+HLNLS NDF   P                  
Sbjct: 86  RLDLH-----AQSLGGKIGPSLAELQHLKHLNLSSNDFEAFP------------------ 122

Query: 122 TVFAGPIPPQLGNLSRLQHLDLGSNYL-FSTGNLDWLSHLSYLRYLNLDESNLANSSDWF 180
             F G +P QLGNLS LQ LDLG NY   + GNLDWL HL +L +L+L   NL+ +  W 
Sbjct: 123 -NFTGILPTQLGNLSNLQSLDLGYNYGDMTCGNLDWLCHLPFLTHLDLSWVNLSKAIHWP 181

Query: 181 QVIGKLHSLKTLSLHSCYLPPVIP-LSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISS 239
           Q I K+ SL  L L    LP +IP +S++H+NSSTSL  L L  N LTSSIYPWL N SS
Sbjct: 182 QAINKMPSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPSNGLTSSIYPWLFNFSS 241

Query: 240 IFISIDLGFN------------------------QLQGSIPESFQHMVYLEHLRLSFNEL 275
             + +DL +N                        +L+GSIP++F +M  L +L LS+N+L
Sbjct: 242 SLVHLDLSWNDLNGSTPDAFGNMTTLAYLDLSSNELRGSIPDAFGNMTTLAYLDLSWNKL 301

Query: 276 EGGIPKFFGNM------------------------CSLITLNLSNNKLSG---------- 301
            G IP  FGNM                        C+L  L LS N L+G          
Sbjct: 302 RGSIPDAFGNMTSLAYLDLSLNELEGEIPKSLTDLCNLQELWLSQNNLTGLKEKDYLACP 361

Query: 302 ------------QLSEIIQNLS---------------SGCLENSLKSLYL-------ENS 327
                       QL     NLS                G L  S+  L          NS
Sbjct: 362 NNTLEVLDLSYNQLKGSFPNLSGFSQLRELFLDFNQLKGTLHESIGQLAQLQLLSIPSNS 421

Query: 328 LTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQT 387
           L G +S +    +SNL  L L+ N L   +S + VP F+   I L+SCK+GP FP WLQT
Sbjct: 422 LRGTVSANHLFGLSNLSYLDLSFNSLTFNISLEQVPQFRASSILLASCKLGPRFPNWLQT 481

Query: 388 QNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDIS 447
           Q  +  LDIS +GISD IP+WFWNL++  ++L++++N I G LPNL +R   S  G+D+S
Sbjct: 482 QEVLSELDISASGISDVIPNWFWNLTSDLNWLNISNNHISGTLPNLQAR---SYLGMDMS 538

Query: 448 SNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSK---LTYVDLSSNLLSGKLPDC 504
           SN  EG IP    N+ +L+LSKN FSGSIS  C         L+++DLS+N LSG+LP+C
Sbjct: 539 SNCLEGSIPQSVFNARWLDLSKNLFSGSISLSCGTPNQPSWGLSHLDLSNNRLSGELPNC 598

Query: 505 WWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564
           W  +  L++L+L NN+FSG+I +S+G L  +QTL L NN  TG L SS +NC  LRL+DL
Sbjct: 599 WEQWKDLIVLDLANNNFSGKIKNSIGLLHQMQTLHLCNNSFTGALPSSLKNCRALRLIDL 658

Query: 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK 624
           GKN L G+I  WMG SLS+LIVL+L+SN+F+G IP  LCQL  +Q+LDLS NN+SGKIPK
Sbjct: 659 GKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQLKQIQMLDLSSNNLSGKIPK 718

Query: 625 CFNNFTAMTQERS---SDPTIK---------DKLMLTWKGSEREYRSTLGLVKSLELSNN 672
           C  N TAM Q+ S   S  TI          D  ++ WKG E+EY+ TL  +KS++ S N
Sbjct: 719 CLKNLTAMAQKGSPVLSYETIYNLSIPYHYVDSTLVQWKGKEQEYKKTLRFIKSIDFSRN 778

Query: 673 NLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQ 732
            L G +P E+ DLV LV+LNLS+N+L G I   IGQLK LD LDLS+NQL G IP +LSQ
Sbjct: 779 QLIGEIPIEVTDLVELVSLNLSRNNLIGSIPTTIGQLKLLDVLDLSQNQLNGRIPDTLSQ 838

Query: 733 LSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITE 792
           ++ LSV+DLS N LSGKIP  TQLQSF+ + Y GNP LCG PL  +C ++E   G   T 
Sbjct: 839 IADLSVLDLSNNTLSGKIPLGTQLQSFDASTYEGNPGLCGPPLLIRCPEDE-LGGVSFTS 897

Query: 793 GRDDADTSED-EDQFITLGFYVSLILGFIVGFWGVCGTLL 831
           G   +   ED +D    + FY +++LGFI+GFWGVCGTLL
Sbjct: 898 GL--SSKKEDIQDDANNIWFYGNIVLGFIIGFWGVCGTLL 935

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489995|ref|XP_003634011.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/899 (45%), Positives = 542/899 (60%), Gaps = 132/899 (14%)

Query: 1   ARVADSNIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHV 60
           A+      + C++ ER+ALL FK  LVD+ G+LSSW    + RDCC+W G+RCSN++ H+
Sbjct: 23  AKAGLGTTVGCVERERQALLRFKHGLVDDYGILSSW----DTRDCCQWRGVRCSNQSGHI 78

Query: 61  ILLDLQ--PIDF-DSF-----PLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLS 112
           ++L L   P +F D +      LRG ISP+LL+L  L HL+LS NDF  S IP F+ SLS
Sbjct: 79  VMLHLPAPPTEFEDEYVHKFQSLRGEISPSLLELEHLTHLDLSCNDFERSHIPPFVASLS 138

Query: 113 KLRYLDLFGTVFAG-------------------------PIPPQLGNLSRLQHLDLGS-- 145
           K++YL+L    F G                         PIPP L +L+++QHL L    
Sbjct: 139 KIQYLNLSYANFTGRLPSQLGNLSNLLSLDLSSNDFEGRPIPPFLASLTKIQHLSLSYAN 198

Query: 146 ----------------------NYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVI 183
                                 NY  + GNL+WLSHLS LR+L+L   NL+ +       
Sbjct: 199 FTGRLPSHFGNLSNLLSLDLSYNYDLNCGNLEWLSHLSSLRHLDLKYVNLSKA------- 251

Query: 184 GKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFIS 243
                     +H  YLPP+   S + +NSS  L  L LSDN+  SSIYPWL N ++    
Sbjct: 252 ----------IH--YLPPLTTPSFSPVNSSAPLAFLDLSDNDYDSSIYPWLFNFTTTLTD 299

Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL 303
                NQ  GS P+ F     L+ L L  N++ G +PK  G +  L  L + +N      
Sbjct: 300 -----NQFAGSFPD-FIGFSSLKELELDHNQINGTLPKSIGQLTKLEALIIGSN------ 347

Query: 304 SEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVP 363
                                  SL GVISE+   ++S L  L L++N     +S +WVP
Sbjct: 348 -----------------------SLQGVISEAHLLHLSRLSYLDLSSNSFNFNMSSEWVP 384

Query: 364 PFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLAS 423
           PFQLI + L+SC++GP FP WL+TQ Q++ LDIS + ISD IP WFWNL++   F ++++
Sbjct: 385 PFQLIFLQLTSCQLGPRFPSWLRTQKQLQSLDISTSDISDVIPHWFWNLTSLIYFFNISN 444

Query: 424 NQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSIS 483
           NQI G LPNLSS+F      ID+SSNH EG IP LPS  S+L+LS N+FSGSI+ LC+++
Sbjct: 445 NQITGTLPNLSSKFDQP-LYIDMSSNHLEGSIPQLPSGLSWLDLSNNKFSGSITLLCTVA 503

Query: 484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNN 543
            S L Y+DLS+NLLSG+LP+CW  + SL +LNLENN FS +IP+S G LQ IQTL L N 
Sbjct: 504 NSYLAYLDLSNNLLSGELPNCWPQWKSLTVLNLENNQFSRKIPESFGSLQLIQTLHLRNK 563

Query: 544 RLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLC 603
            L GEL SS + C  L  +DL KN L GEIP W+G +L NL+VL+L+SNKF G I  ++C
Sbjct: 564 NLIGELPSSLKKCKSLSFIDLAKNRLSGEIPPWIGGNLPNLMVLNLQSNKFSGSISPEVC 623

Query: 604 QLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK-----------DKLMLTWKG 652
           QL  +Q+LDLS NN+SG IP+C +NFTAMT++ S   T             DK  + WKG
Sbjct: 624 QLKKIQILDLSDNNMSGTIPRCLSNFTAMTKKESLTITYNFSMSYQHWSYVDKEFVKWKG 683

Query: 653 SEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSL 712
            E E+++TLGLVKS++LS+N L G +P+E+ DL+ LV+LN S+N+LTG I   IGQLKSL
Sbjct: 684 REFEFKNTLGLVKSIDLSSNKLTGEIPKEVTDLLELVSLNFSRNNLTGLIPITIGQLKSL 743

Query: 713 DFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCG 772
           D LDLS+NQL+G IPSSLS++  LS +DLS NNLSG IP  TQLQSFN   Y GNP LCG
Sbjct: 744 DILDLSQNQLIGEIPSSLSEIDRLSTLDLSNNNLSGMIPQGTQLQSFNTFSYEGNPTLCG 803

Query: 773 LPLPNKCRDEESAAGPGITEGRDDADTSEDEDQFITLGFYVSLILGFIVGFWGVCGTLL 831
            PL  KC  +++   P +    DD     ++     + FYVS+ LGFIVGFWGVCGTLL
Sbjct: 804 PPLLKKCPRDKAEGAPNVYSDEDDIQQDGND-----MWFYVSIALGFIVGFWGVCGTLL 857

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807651|emb|CAN64389.1| hypothetical protein VITISV_018647 [Vitis vinifera]

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/946 (44%), Positives = 554/946 (58%), Gaps = 151/946 (15%)

Query: 2   RVADSNIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVI 61
           RV D+ +  CI+ ER+ALL FK  +VD+ G+LSSWG  ++KRDCCKW G+ C+N+T HVI
Sbjct: 24  RVGDAKV-GCIERERQALLHFKQGVVDDYGMLSSWGNGEDKRDCCKWRGVECNNQTGHVI 82

Query: 62  LLDLQ---PIDFDSFP-LRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYL 117
           +LDL    P+    F  L G I P+L +L  L+HLNLS+N F G                
Sbjct: 83  MLDLHTPPPVGIGYFQSLGGKIGPSLAELQHLKHLNLSWNQFEG---------------- 126

Query: 118 DLFGTVFAGPIPPQLGNLSRLQHLDLGSNYL-FSTGNLDWLSHLSYLRYLNLDESNLANS 176
                     +P QLGNLS LQ LDLG NY   S GNLDWLS L  L +L+L   NL+ +
Sbjct: 127 ---------ILPTQLGNLSNLQSLDLGHNYGDMSCGNLDWLSDLPLLTHLDLSGVNLSKA 177

Query: 177 SDWFQVIGKLHSLKTLSLHSCYLPPVIP-LSLNHLNSSTSLETLVLSDNNLTSSIYPWLP 235
             W Q I K+ SL  L L    LPP+IP +S++H+NSSTSL  L LS N LTSSIYPWL 
Sbjct: 178 IHWPQAINKMPSLTELYLSDTQLPPIIPTISISHINSSTSLAVLDLSRNGLTSSIYPWLF 237

Query: 236 NISSIFISIDL------------------------GFNQLQGSIPESFQHMVYLEHLRL- 270
             +S+ + +DL                          N+L+GSIP++F +M  L HL L 
Sbjct: 238 CFNSVLVHLDLCMNDLNCSILDAFGNMTTLAYLDLSLNELRGSIPDAFGNMTTLAHLDLH 297

Query: 271 -----------------------SFNELEGGIPKFFGNMCSLITLNLSNNKLSG------ 301
                                  S N+LEG IPK   ++C+L  L LS N L+G      
Sbjct: 298 SNHLNGSIPDAFGNMTSLAYLDLSSNQLEGEIPKSLTDLCNLQELWLSRNNLTGLKEKDF 357

Query: 302 -----------------------------QLSEIIQ--NLSSGCLENSLKSLYL------ 324
                                        QL E+    N  +G L  S+  L        
Sbjct: 358 LACSNHTLEVLGLSYNQFKGSFPDLSGFSQLRELSLGFNQLNGTLPESIGQLAQLQVLSI 417

Query: 325 -ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPK 383
             NSL G +S +    +SNL  L L+ N L   +S + VP F+   I L+SCK+GP FP 
Sbjct: 418 PSNSLRGTVSANHLFGLSNLINLDLSFNSLTFNISLEQVPQFRASRIMLASCKLGPRFPN 477

Query: 384 WLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPG 443
           WLQTQ  +  LDIS +GISD IP+WFWNL++ F +L++++N I G LPNL +    +   
Sbjct: 478 WLQTQEVLRELDISASGISDAIPNWFWNLTSDFKWLNISNNHISGTLPNLQA----TPLM 533

Query: 444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSK---LTYVDLSSNLLSGK 500
           +D+SSN  EG IP    N+ +L+LSKN FSGSIS  C  +      L+++DLS+N LSG+
Sbjct: 534 LDMSSNCLEGSIPQSVFNAGWLDLSKNLFSGSISLSCGTTNQPSWGLSHLDLSNNRLSGE 593

Query: 501 LPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLR 560
           L +CW  +  L +LNL NN+FSG+I DS+G L  +QTL L NN  TG L SS +NC  LR
Sbjct: 594 LSNCWERWKYLFVLNLANNNFSGKIKDSIGLLDQMQTLHLRNNSFTGALPSSLKNCRALR 653

Query: 561 LLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG 620
           L+DLGKN L G+I  WMG SLS+LIVL+L+SN+F+G IP  LCQL  +Q+LDLS NN+SG
Sbjct: 654 LIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQLKQIQMLDLSSNNLSG 713

Query: 621 KIPKCFNNFTAMTQERS-----------SDPTIK-DKLMLTWKGSEREYRSTLGLVKSLE 668
           KIPKC  N TAM Q+RS           S+P    D  ++ WKG E+EY+ TLGL+KS++
Sbjct: 714 KIPKCLKNLTAMAQKRSQVLFYDTWYDASNPHYYVDSTLVQWKGKEQEYKKTLGLIKSID 773

Query: 669 LSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPS 728
            S+N L G +P E+ DLV LV+LNLS N+L G I   IGQLK LD LDLS+NQL G IP 
Sbjct: 774 FSSNKLIGEIPIEVTDLVELVSLNLSSNNLIGSIPTTIGQLKLLDVLDLSQNQLNGRIPD 833

Query: 729 SLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAG- 787
           +LSQ++ LSV+DLS N L GKIP  TQLQSF+ + Y GNP LCG PL  +C ++E     
Sbjct: 834 TLSQIADLSVLDLSNNTLLGKIPLGTQLQSFDASTYEGNPGLCGPPLLKRCPEDELGGVS 893

Query: 788 --PGITEGRDDADTSEDEDQFITLGFYVSLILGFIVGFWGVCGTLL 831
              G++  ++D      +D    + FY +++LGFI+GFWGVCGTLL
Sbjct: 894 FISGLSSKKEDI-----QDDANNIWFYGNIVLGFIIGFWGVCGTLL 934

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/947 (43%), Positives = 568/947 (59%), Gaps = 134/947 (14%)

Query: 2   RVADSNIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVI 61
           +V D+ +  CI+ ER+ALL FK  + D+ G+LSSW  E  KRDCCKW G++CS++T H+ 
Sbjct: 28  QVGDAKV-GCIERERQALLKFKEDIADDFGILSSWRSEKNKRDCCKWRGVQCSSQTGHIT 86

Query: 62  LLDLQPIDF-DSFP-LRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDL 119
            LDL   ++ D F  LRG ISP+LL+L  L HL+LS NDF G  +PEFIGSL+K+RYLDL
Sbjct: 87  SLDLSAYEYKDEFRHLRGKISPSLLELQQLNHLDLSGNDFEGRSMPEFIGSLTKMRYLDL 146

Query: 120 FGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDW 179
             T  AGP+P QLGNLS L  LDL  N   S+ NLDWLS LS L +L L+  NL+ +  W
Sbjct: 147 SSTYLAGPLPHQLGNLSNLNFLDLSGNSNMSSENLDWLSRLSSLTHLGLNHLNLSKAIRW 206

Query: 180 FQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISS 239
              I KL SL  L L SC LP  I  SL+ + SS SL  L LS N L++SIYPWL N +S
Sbjct: 207 ADAINKLPSLIDLLLKSCDLPSPITPSLSLVTSSMSLAVLDLSCNQLSTSIYPWLFNFNS 266

Query: 240 IFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKL 299
             + +DL +N LQ S P++F +MV LE+L LS+N+L+G IPK F +  SL+ L+LSNN+L
Sbjct: 267 SLVHLDLSYNHLQASPPDAFGNMVSLEYLDLSWNQLKGEIPKSFSS--SLVFLDLSNNQL 324

Query: 300 SGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPL----- 353
            G + +   N++      SL+++ L  N L G I +S F+N+ NL+ L L  N L     
Sbjct: 325 QGSIPDTFGNMT------SLRTVNLTRNQLEGEIPKS-FNNLCNLQILKLHRNNLAGVLV 377

Query: 354 ------------VLKLSH--------DWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIEL 393
                       +L LSH        D +    L  + L   ++    P+ +    Q+EL
Sbjct: 378 KNLLACANDTLEILDLSHNQFIGSLPDLIGFSSLTRLHLGHNQLNGTLPESIAQLAQLEL 437

Query: 394 LDISNTGISDTI---------------------------PDWF----------------- 409
           L I +  +  T+                            DW                  
Sbjct: 438 LKIPSNSLQGTVSEAHLFSLSKLQRLDLSFNSLLTLNLSSDWVPQFQLTHIFLASCKLGP 497

Query: 410 ----WNLSNK-FSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIP-------- 456
               W  + K   +LD++ + I   +PN    F ++   ++IS+N   G++P        
Sbjct: 498 RFPGWLRTQKGVGWLDISGSGISDVIPNWFWNFTSNLNRLNISNNQITGVVPNASIEFSR 557

Query: 457 ----PLPSN------------SSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGK 500
                + SN            + +L+LSKN FSGSIS LC++S     Y+DLS+NLLSG+
Sbjct: 558 FPQMDMSSNYFEGSIPVFIFYAGWLDLSKNMFSGSISSLCAVSRGASAYLDLSNNLLSGE 617

Query: 501 LPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLR 560
           LP+CW  ++ LV+LNLENN+FSG+I DS+G L+ I++L L NN+LTGEL  S +NC++LR
Sbjct: 618 LPNCWAQWEGLVVLNLENNNFSGKIQDSIGSLEAIESLHLRNNKLTGELPLSLKNCTKLR 677

Query: 561 LLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG 620
           ++DLG+N L G IP+W+G SL NL+VL+L+ N+F+G IP  +CQL  +Q+LDLS NNISG
Sbjct: 678 VIDLGRNKLCGNIPSWIGRSLPNLVVLNLRFNEFYGSIPMDMCQLKKIQILDLSNNNISG 737

Query: 621 KIPKCFNNFTAMTQERS-------SDPTIK---------DKLMLTWKGSEREYRSTLGLV 664
            IP+CFNNFTAM Q+ S       + P  K         DK M+ WKG E EY  TLGL+
Sbjct: 738 MIPRCFNNFTAMVQQGSLVITYNYTIPCFKPLSRPSSYVDKQMVQWKGRELEYEKTLGLL 797

Query: 665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724
           KS++LS+N L+G +P E+ +L+ L++LNLS+N LTG I P IGQLK++D LDLS N+L G
Sbjct: 798 KSIDLSSNELSGEIPREVTNLLDLISLNLSRNFLTGLIPPTIGQLKAMDALDLSWNRLFG 857

Query: 725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEES 784
            IPS+LSQ+  LSV+DLS+N+  GKIP+ TQLQSFN + Y GNP+LCG PL  KC ++E 
Sbjct: 858 KIPSNLSQIDRLSVLDLSHNDFWGKIPSGTQLQSFNSSTYEGNPKLCGPPLLKKCLEDER 917

Query: 785 AAGPGITEGRDDADTSEDEDQFITLGFYVSLILGFIVGFWGVCGTLL 831
                  EG    + ++       L FY+ + LGFIVGFWG+CGTLL
Sbjct: 918 GEHSPPNEGHVQKEAND-------LWFYIGVALGFIVGFWGICGTLL 957

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115848|ref|XP_002332072.1| predicted protein [Populus trichocarpa] gi|222831958|gb|EEE70435.1| predicted protein [Populus trichocarpa]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/856 (46%), Positives = 534/856 (62%), Gaps = 45/856 (5%)

Query: 11  CIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDF 70
           C++ E++ALL  K  LVDE+  LSSWG  D   DCC WTG+RC+N+T HV  L L     
Sbjct: 2   CMEREKQALLKLKDDLVDENDQLSSWGTSD---DCCNWTGVRCNNRTGHVYSLQLNQQLD 58

Query: 71  DSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPP 130
           DS   +G IS  LL+L  L +L++S  +   + IP+FIGSL  L +L++      G IP 
Sbjct: 59  DSMQFKGDISSPLLELKHLAYLDMS--EVRATSIPQFIGSLKHLMHLNMSFCDLTGTIPH 116

Query: 131 QLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLK 190
           QLGNL+RL  LDL  N      +L WLS L  L++L+L  ++L+ ++DWFQ I  L SL 
Sbjct: 117 QLGNLTRLVFLDLSYNNFNKVESLSWLSRLPALKHLDLSTADLSGTTDWFQAINSLPSLH 176

Query: 191 TLSLHSCYLPPVIPLSLNHLN-SSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFN 249
            L L  C L  VI   L   N S  SL  + LS N L SSI+PWL N ++  + + L  N
Sbjct: 177 NLYLSGCGLSSVISPPLFRSNYSPASLADIDLSQNTLKSSIFPWLLNFNNSLVHLKLYDN 236

Query: 250 QLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQN 309
           + QG IP++   M+ LE L LS N  EG IP+   N+  L +L+LS N L G++ ++ +N
Sbjct: 237 EFQGKIPKALGAMINLESLLLSGNHFEGEIPRALANLGRLESLDLSWNSLVGEVPDM-KN 295

Query: 310 LSSGCL----ENSLKSLYLENS---------------LTGVISESFFSNISNLKELHLAN 350
           LS        +N L   ++EN                + G ISE  F N++ L  L +++
Sbjct: 296 LSFITRLFLSDNKLNGSWIENIRLLSDLAYLDISYNFMNGTISEINFLNLTELTHLDISS 355

Query: 351 NPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFW 410
           N  V  LS +W PPFQL  + +SSCK+GP FP+WL+TQ +I  LDISN GI D I   F 
Sbjct: 356 NAFVFNLSLNWTPPFQLDTLIMSSCKLGPSFPQWLRTQRRISELDISNAGIEDDISSRFG 415

Query: 411 NLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKN 470
            L  K ++L+++ NQI G+   L S  G S   +D+SSN   G +P LP N++ LNLSKN
Sbjct: 416 KLPFKLNYLNISHNQITGEAHKLPSVVGDS-ATVDMSSNFLHGSLP-LPLNATILNLSKN 473

Query: 471 RFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMG 530
            FSG+IS LCSI+  +L Y+DLS N LSG++PDCW T   L ILNL  N+FSGRIP S+G
Sbjct: 474 LFSGTISNLCSIACERLFYLDLSDNCLSGEIPDCWMTCKELNILNLAGNNFSGRIPASLG 533

Query: 531 FLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLK 590
            L  IQTL+L NN  +GEL  S  NC+QL +LDLG+N L G+IP+W+GE+LS+L+VL L+
Sbjct: 534 SLVFIQTLNLRNNSFSGELPPSLANCTQLEILDLGENRLSGKIPSWIGENLSSLVVLRLR 593

Query: 591 SNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI-------- 642
           SN   G +P  LC LA LQ+LDLS NNIS  IP CF+NF+AM++  S+   I        
Sbjct: 594 SNYLDGTLPLVLCHLAHLQILDLSHNNISDDIPHCFSNFSAMSKNGSTYEFIGHSNNHTL 653

Query: 643 -------KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSK 695
                   D + +  KG E EY  TL  VK ++LS+NNL+G +P+ I  L GLV+L+LS 
Sbjct: 654 PFFIILYHDSVRVVLKGMELEYGKTLEQVKIMDLSSNNLSGEIPDGIAKLEGLVSLHLSN 713

Query: 696 NHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQ 755
           N LTG I P+IG ++SL+ LDLS NQL GG+P+ L  L+ LS +++SYNNLSGKIP  TQ
Sbjct: 714 NRLTGIIPPRIGLMRSLESLDLSTNQLSGGLPNGLRDLNFLSSLNVSYNNLSGKIPLSTQ 773

Query: 756 LQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRDDADTSEDEDQFITLGFYVSL 815
           LQ+F++  +  N ELCG PL N+C  E+ A  P I++G  + D  +DED FI+  FY+S+
Sbjct: 774 LQTFDNNSFVANAELCGKPLSNECAAEQ-AHDPSISQGSKNVDI-QDEDGFISRRFYLSM 831

Query: 816 ILGFIVGFWGVCGTLL 831
             GF  GFW VCGTLL
Sbjct: 832 GTGFATGFWAVCGTLL 847

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490560|ref|XP_002266431.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/962 (43%), Positives = 554/962 (57%), Gaps = 159/962 (16%)

Query: 9   IRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPI 68
           + C++ ER+ALL FK  +VD  G LSSWG  + + DCCKW G+ C N+T HVI+LDL   
Sbjct: 34  VGCMERERQALLHFKQGVVDHFGTLSSWGNGEGETDCCKWRGVECDNQTGHVIMLDLHGT 93

Query: 69  DFDSFP----LRGTIS---PALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG 121
             D       L G IS   P+L +L  L+HLNLSFN F             ++ ++ L  
Sbjct: 94  GHDGMGDFQILGGRISQLGPSLSELQHLKHLNLSFNLF-------------EVSHIILSF 140

Query: 122 TVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQ 181
             F G +P QLGNLS LQ LDL  N+  S  NL+WLS+L  L +L+L   +L+ +  W Q
Sbjct: 141 PYFTGVLPTQLGNLSNLQSLDLSDNFEMSCENLEWLSYLPSLTHLDLSGVDLSKAIHWPQ 200

Query: 182 VIGKLHS-LKTLSLHSCYLPPVIP-LSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISS 239
            I K+ S L  L L    LP +IP +S++H NSSTSL  L LS N LTSSI PWL   SS
Sbjct: 201 AINKMSSSLTELYLSFTKLPWIIPTISISHTNSSTSLAVLDLSLNGLTSSINPWLFYFSS 260

Query: 240 IFISIDL----------------------------------------------GFNQLQG 253
             + +DL                                               +NQL G
Sbjct: 261 SLVHLDLFGNDLNGSILDALGNMTNLAYLDLSLNQLEGEIPKSFSISLAHLDLSWNQLHG 320

Query: 254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSS- 312
           SIP++F +M  L +L LS N L G IP   GNM +L  L LS N+L G++ + +++L + 
Sbjct: 321 SIPDAFGNMTTLAYLDLSSNHLNGSIPDALGNMTTLAHLYLSANQLEGEIPKSLRDLCNL 380

Query: 313 -------------------GCLENSLKSLYLE---------------------------- 325
                               C  N+L+SLYL                             
Sbjct: 381 QILLLSQNNLSGLLEKDFLACSNNTLESLYLSENQFKGSFPDLSGFSQLRELYLGFNQLN 440

Query: 326 --------------------NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF 365
                               NSL G +S +    +S L +L L+ N L + +S + VP F
Sbjct: 441 GTLPESIGQLAQLQGLNIRSNSLQGTVSANHLFGLSKLWDLDLSFNYLTVNISLEQVPQF 500

Query: 366 QLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQ 425
           Q   I L+SCK+GP FP WLQTQ +++ LDIS +GISD IP+WFWNL++   +L++++N 
Sbjct: 501 QAQEIKLASCKLGPRFPNWLQTQKRLQELDISASGISDVIPNWFWNLTSNLVWLNISNNH 560

Query: 426 IKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGS 485
           I G LPNL +   T + G+D+SSN  +G IP    N  +L+LSKN FSGS+S  C  +  
Sbjct: 561 ISGTLPNLEA---TPSLGMDMSSNCLKGSIPQSVFNGQWLDLSKNMFSGSVSLSCGTTNQ 617

Query: 486 K---LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHN 542
               L +VDLS+N LSG+LP CW  +  L++LNL NN+FSG I +S+G L  +QTL L N
Sbjct: 618 SSWGLLHVDLSNNQLSGELPKCWEQWKYLIVLNLTNNNFSGTIKNSIGMLHQMQTLHLRN 677

Query: 543 NRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQL 602
           N LTG L  S +NC  LRL+DLGKN L G++P W+G +LS+LIV++L+SN+F+G IP  L
Sbjct: 678 NSLTGALPLSLKNCRDLRLIDLGKNKLSGKMPAWIGGNLSDLIVVNLRSNEFNGSIPLNL 737

Query: 603 CQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS-------------SDPTIKDKLMLT 649
           CQL  +Q+LDLS NN+SG IPKC NN TAM Q  S             S  +  D  ++ 
Sbjct: 738 CQLKKVQMLDLSSNNLSGIIPKCLNNLTAMGQNGSLVIAYEERLFVFDSSISYIDNTVVQ 797

Query: 650 WKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQL 709
           WKG E EY+ TL LVKS++ SNN LNG +P E+ DLV L++LNLSKN+L G I   IGQL
Sbjct: 798 WKGKELEYKKTLRLVKSIDFSNNKLNGEIPIEVTDLVELLSLNLSKNNLIGSIPLMIGQL 857

Query: 710 KSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPE 769
           KSLDFLDLS+NQL GGIP SLSQ++GLSV+DLS N LSGKIP+ TQL SFN + Y GNP 
Sbjct: 858 KSLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQLHSFNASTYDGNPG 917

Query: 770 LCGLPLPNKCRDEESAAGPGITEGRDDADTSEDEDQFITLGFYVSLILGFIVGFWGVCGT 829
           LCG PL  KC+++E+      T   ++ D  +D +    + FY +++LGFI+GFWGVCGT
Sbjct: 918 LCGPPLLKKCQEDETKE-VSFTSLINEKDIQDDTN---NIWFYGNIVLGFIIGFWGVCGT 973

Query: 830 LL 831
           LL
Sbjct: 974 LL 975

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/990 (44%), Positives = 572/990 (57%), Gaps = 181/990 (18%)

Query: 1   ARVADSNIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHV 60
           A+     +  CI+ ER+ALL F+  LVD  G+LSSWG  D+ RDCC+W G++CSN++ H+
Sbjct: 20  AKPGLGKVTGCIERERQALLHFRRGLVDRYGLLSSWG--DDNRDCCQWRGVQCSNQSGHI 77

Query: 61  ILLDL---------QPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIP------ 105
           I+L L         Q + + S  LRG ISP+LL+L  L HL+LS+NDF G  IP      
Sbjct: 78  IMLHLPAPPNEDYSQDVIYQS--LRGEISPSLLELDHLTHLDLSYNDFEGRHIPPFLGSL 135

Query: 106 -------------------------------------------EFIGSLSKLRYLDLFGT 122
                                                      E++  LS LR+LDL   
Sbjct: 136 SRMQYLNLSHANFAQTVPTQLGNLSNLLSLDLSDNYLLNSGNLEWLSRLSSLRHLDLSSV 195

Query: 123 VFAGPIP--------PQLGNLSRLQH-------------------------LDLGSNYLF 149
             +  I         P L +L  LQH                         LDL  NYL 
Sbjct: 196 NLSEAIHWSQAINKLPSLIHLD-LQHCYLPPIPPLTIPSLSHGNSSVPLVFLDLSGNYLT 254

Query: 150 STGNLDWLSHLSYLRYLNLDES-NLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLN 208
           S+    WL + S    L+LD S N  N S      G + SL+ L LHS  L   IP ++ 
Sbjct: 255 SSI-YPWLLNFST-TLLHLDLSFNGLNGSIPEYAFGNMSSLEYLDLHSSELDDEIPDTIG 312

Query: 209 HLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHL 268
            + S   L  L +S+N L  SI P       +   +DL  NQLQGSIP++  +MV L+ L
Sbjct: 313 DMGS---LAYLDISENQLWGSI-PDTVGKMVLLSHLDLSLNQLQGSIPDTVGNMVSLKKL 368

Query: 269 RLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLE------------ 316
            LS N L+G IPK   N+C+L  L L  N LSGQL+      ++  LE            
Sbjct: 369 SLSENHLQGEIPKSLSNLCNLQELELDRNNLSGQLAPDFVACANDTLETLFLSDNQFSGS 428

Query: 317 -------NSLKSLYLE-------------------------NSLTGVISESFFSNISNLK 344
                  +SL+ L+L+                         NSL G ISE+   N+S L 
Sbjct: 429 VPALIGFSSLRELHLDFNQLNGTLPESVGQLANLQSLDIASNSLQGTISEAHLFNLSWLS 488

Query: 345 ELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDT 404
            L+L++N L   +S DWVPPFQL+ + L+SCK+GP FP WL+TQNQ+  LDISN+ ISD 
Sbjct: 489 YLNLSSNSLTFNMSLDWVPPFQLLSLRLASCKLGPRFPSWLRTQNQLSELDISNSEISDV 548

Query: 405 IPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSF 464
           +PDWFWN+++  + L +++N+IKG LPNLSS FG S   ID+SSN FEG IP LP +  +
Sbjct: 549 LPDWFWNVTSTVNTLSISNNRIKGTLPNLSSEFG-SFSNIDMSSNCFEGSIPQLPYDVQW 607

Query: 465 LNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR 524
           L+LS N+ SGSIS LC++ G++L  +DLS+N LSG LP+CW  ++SLV+LNLENN FSG+
Sbjct: 608 LDLSNNKLSGSISLLCTV-GTELLLLDLSNNSLSGGLPNCWAQWESLVVLNLENNRFSGQ 666

Query: 525 IPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNL 584
           IP S G L++IQTL L NN LTGEL  SF+NC+ LR +DL KN L G+IP W+G SL NL
Sbjct: 667 IPISFGSLRSIQTLHLRNNNLTGELPLSFKNCTSLRFIDLAKNRLSGKIPEWIGGSLPNL 726

Query: 585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS------- 637
            VL+L SN+F G I  +LCQL  +Q+LDLS NN+ G +P+C   FTAMT++ S       
Sbjct: 727 TVLNLGSNRFSGGICPELCQLKNIQILDLSSNNMLGVVPRCVGGFTAMTKKGSLVIVHNY 786

Query: 638 --SDPTIK----------DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDL 685
             +D + K          D+ ++ WKG E EY+STLGLVKS++ S+N L+G +PEE++DL
Sbjct: 787 SFADFSSKYSLIRNAFYVDRALVKWKGREFEYKSTLGLVKSIDFSSNKLSGEIPEEVIDL 846

Query: 686 VGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNN 745
           V LV+LNLS+N+LT  I  +IGQLKSL+ LDLS+NQL G IP+SL ++S LSV+DLS NN
Sbjct: 847 VELVSLNLSRNNLTRLIPARIGQLKSLEVLDLSQNQLFGEIPASLVEISDLSVLDLSDNN 906

Query: 746 LSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRDDADTSEDEDQ 805
           LSGKIP  TQLQSFN   Y GNP LCGLPL  KC +++          + D+ T   ED+
Sbjct: 907 LSGKIPQGTQLQSFNIDSYKGNPALCGLPLLKKCFEDKI---------KQDSPTHNIEDK 957

Query: 806 FITLG----FYVSLILGFIVGFWGVCGTLL 831
               G    FYVS+ LGFIVGFWGVCGTLL
Sbjct: 958 IQQDGNDMWFYVSVALGFIVGFWGVCGTLL 987

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	833
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.632	0.582	0.368	4.1e-88
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.709	0.594	0.302	8.6e-77
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.686	0.771	0.299	4.7e-74
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.638	0.612	0.333	1.6e-72
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.924	0.88	0.312	5.5e-70
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.762	0.785	0.318	3.8e-69
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.767	0.798	0.313	3.5e-68
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.889	0.857	0.297	1.2e-65
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.894	0.635	0.292	5.5e-64
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.787	0.736	0.312	2e-63

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 211/572 (36%), Positives = 321/572 (56%)

Query:   236 NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLS 295
             N  +  + +DL  N+L G++PES   +  L+ L LS N   G +P   GNM SL  L+LS
Sbjct:   346 NKGNSLVFLDLSSNKLAGTLPESLGSLRNLQTLDLSSNSFTGSVPSSIGNMASLKKLDLS 405

Query:   296 NNKLSGQLSEIIQNLSSGCLENSLKSLY---LENSLTGVISESFFSNISNLKELHLANNP 352
             NN ++G ++E +  L+     N + + +   L+ S    ++     +I    E + +   
Sbjct:   406 NNAMNGTIAESLGQLAELVDLNLMANTWGGVLQKS--HFVNLRSLKSIRLTTEPYRS--- 460

Query:   353 LVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPD-WFWN 411
             LV KL   W+PPF+L +I + +C+IG  FP WLQ Q ++  + + NTGI DTIPD WF  
Sbjct:   461 LVFKLPSTWIPPFRLELIQIENCRIGL-FPMWLQVQTKLNFVTLRNTGIEDTIPDSWFSG 519

Query:   412 LSNKFSFLDLASNQIKGKLP-----------NLSSR--------FGTSNPGIDISSNHFE 452
             +S+K ++L LA+N+IKG+LP           +LSS         + T+   + +  N+F 
Sbjct:   520 ISSKVTYLILANNRIKGRLPQKLAFPKLNTIDLSSNNFEGTFPLWSTNATELRLYENNFS 579

Query:   453 GL----IXXXXXXXXXXXXXXXXXXGSI-SFLCSISGSKLTYVDLSSNLLSGKLPDCWWT 507
             G     I                  G+I S LC +SG  L  + L  N  SG  P CW  
Sbjct:   580 GSLPQNIDVLMPRMEKIYLFSNSFTGNIPSSLCEVSG--LQILSLRKNHFSGSFPKCWHR 637

Query:   508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
                L  +++  N+ SG IP+S+G L ++  L L+ N L G++  S RNCS L  +DLG N
Sbjct:   638 QFMLWGIDVSENNLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGN 697

Query:   568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
              L G++P+W+G+ LS+L +L L+SN F G+IP  LC +  L++LDLS N ISG IPKC +
Sbjct:   698 KLTGKLPSWVGK-LSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLSGNKISGPIPKCIS 756

Query:   628 NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVG 687
             N TA+ +  +++   ++ + +  +   REY +   +  S+ LS NN++G +P EI+ L+ 
Sbjct:   757 NLTAIARGTNNE-VFQNLVFIVTRA--REYEA---IANSINLSGNNISGEIPREILGLLY 810

Query:   688 LVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
             L  LNLS+N + G I  KI +L  L+ LDLS+N+  G IP S + +S L  ++LS+N L 
Sbjct:   811 LRILNLSRNSMAGSIPEKISELSRLETLDLSKNKFSGAIPQSFAAISSLQRLNLSFNKLE 870

Query:   748 GKIPTVTQLQSFNDTVYAGNPELCGLPLPNKC 779
             G IP + + Q  + ++Y GN  LCG PLP KC
Sbjct:   871 GSIPKLLKFQ--DPSIYIGNELLCGKPLPKKC 900

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 8.6e-77, Sum P(2) = 8.6e-77
 Identities = 189/625 (30%), Positives = 302/625 (48%)

Query:   221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
             +SDNNL  +    L N++ +   ID+  N   G +P +   +  LE      N   G IP
Sbjct:   357 VSDNNLNGNFPSSLLNLNQLRY-IDICSNHFTGFLPPTISQLSNLEFFSACDNSFTGSIP 415

Query:   281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENS--LTGVISESFFS 338
                 N+ SL TL LS N+L+   +  I+N+S   L ++L+ L L+N+      +    F 
Sbjct:   416 SSLFNISSLTTLGLSYNQLNDTTN--IKNIS---LLHNLQRLLLDNNNFKASQVDLDVFL 470

Query:   339 NISNLKELHLANNPL-VLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDIS 397
             ++  L  L L+  PL    ++ D      L  + LS C I   FP++++ Q  +  +D+S
Sbjct:   471 SLKRLVSLALSGIPLSTTNITSDSEFSSHLEYLELSGCNI-IEFPEFIRNQRNLSSIDLS 529

Query:   398 NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIXX 457
             N  I   +P+W W L  + S +DL++N + G   +L +  G+    +D+SSN F+G +  
Sbjct:   530 NNNIKGQVPNWLWRLP-ELSTVDLSNNSLIGFNGSLKALSGSKIVMLDLSSNAFQGPLFM 588

Query:   458 XXXXXXXXXXXXXXXXGSIS-FLCSISGSKLTYVDLSSNLLSGKLPDCWWT-FDSLVILN 515
                             G I   +C ++   +  +DLS+N L G +P C      SL +LN
Sbjct:   589 PPRGIQYFLGSYNNFTGYIPPSICGLANPLI--LDLSNNNLHGLIPRCLEAQMSSLSVLN 646

Query:   516 LENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT 575
             L NNS  G +P+     + + +L + +N L G+L +S   CS L +L++  N +    P 
Sbjct:   647 LRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEILNVESNNINDTFPF 706

Query:   576 WMGESLSNLIVLSLKSNKFHGKIP-FQLCQLAF--LQVLDLSLNNISGKIPK-CFNNFTA 631
             W+  SL  L VL L+SN F G +         F  L++ D+S N+  G +P   F N+TA
Sbjct:   707 WLN-SLPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSHNDFVGTLPSDYFMNWTA 765

Query:   632 MTQERSSDPTIKD--------KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIM 683
             +++  +    I D         L+L  KG   E +  L     ++ + N + G +PE + 
Sbjct:   766 ISKSETELQYIGDPEDYGYYTSLVLMNKGVSMEMQRILTKYTVIDFAGNKIQGKIPESVG 825

Query:   684 DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY 743
              L  L  LNLS N  TG I   +  L +L+ LD+S+N++ G IP  L  LS L  +++S+
Sbjct:   826 ILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSH 885

Query:   744 NNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRDDADTSEDE 803
             N L G IP  TQ    N + Y GNP + G  L + C D  +   P        + +SE E
Sbjct:   886 NQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVCGDIHAPRPPQAVLPHSSSSSSE-E 944

Query:   804 DQFIT-----LGFYVSLILGFIVGF 823
             D+ I+     LGF   ++ G  +G+
Sbjct:   945 DELISWIAACLGFAPGMVFGLTMGY 969

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
 Identities = 184/614 (29%), Positives = 294/614 (47%)

Query:   234 LPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN 293
             L  +SS+   IDLG NQL+G +P +   +  LE   +S N   G IP     + SLI L+
Sbjct:   128 LLKLSSV-TWIDLGDNQLKGMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMIPSLILLH 186

Query:   294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
             L  N  SG     I N+SS      L ++   N    ++  S FS + +L  L ++   +
Sbjct:   187 LGRNDFSGPFE--IGNISSPS-NLQLLNIGRNNFNPDIVDLSIFSPLLSLGYLDVSG--I 241

Query:   354 VLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLS 413
              LK+S     P  +  + L SC I   FPK+L+ Q  +E LDIS   I   +P+W W+L 
Sbjct:   242 NLKISSTVSLPSPIEYLGLLSCNIS-EFPKFLRNQTSLEYLDISANQIEGQVPEWLWSLP 300

Query:   414 NKFSFLDLASNQIKG-KLPNLSSRFGTSNPGIDISSNHFEGLIXXX-XXXXXXXXXXXXX 471
              +  +++++ N   G + P    + G     +DISSN F+                    
Sbjct:   301 -ELRYVNISHNSFNGFEGPADVIQGGRELLVLDISSNIFQDPFPLLPVVSMNYLFSSNNR 359

Query:   472 XXGSI-SFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMG 530
               G I   +C +   ++    LS+N  SG +P C+     L +L+L NN+ SG  P+   
Sbjct:   360 FSGEIPKTICELDNLRILV--LSNNNFSGSIPRCFENLH-LYVLHLRNNNLSGIFPEE-A 415

Query:   531 FLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLK 590
                ++Q+  + +N  +GEL  S  NCS +  L++  N +    P+W+    +  I++   
Sbjct:   416 ISHHLQSFDVGHNLFSGELPKSLINCSDIEFLNVEDNRINDTFPSWLELLPNLQILVLRS 475

Query:   591 SNKFHGKI-PFQLCQLAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTI------ 642
             +  +     P      + L++ D+S N  +G +P   F  ++ M+     D  I      
Sbjct:   476 NEFYGPIFSPGDSLSFSRLRIFDISENRFTGVLPSDYFVGWSVMSSVVDIDGRIIQYTVT 535

Query:   643 ---KD----KLMLTWKGSEREY-RSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLS 694
                +D     + L  KG + E   S   + K++++S N L G +PE I  L  ++ L++S
Sbjct:   536 GIDRDFYHKSVALINKGLKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEVIVLSMS 595

Query:   695 KNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVT 754
              N  TG I P +  L +L  LDLS+N+L G IP  L +L+ L  M+ S+N L G IP  T
Sbjct:   596 NNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPETT 655

Query:   755 QLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRDDADTSEDEDQFITLGFYVS 814
             Q+Q+ + + +  NP LCG PL  KC  EE A     T+   D D  E+EDQ  +   +++
Sbjct:   656 QIQTQDSSSFTENPGLCGAPLLKKCGGEEEA-----TKQEQDED-KEEEDQVFS---WIA 706

Query:   815 LILGFIVGFWGVCG 828
               +G++ G   VCG
Sbjct:   707 AAIGYVPGV--VCG 718

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 1.6e-72, Sum P(2) = 1.6e-72
 Identities = 195/584 (33%), Positives = 286/584 (48%)

Query:   224 NNLTSSIYPWLPNISSIFISIDLGFNQLQGSIP-ESFQHMVYLEHLRLSFNELEGGIPKF 282
             N  T ++   L  I+S+  SI+L  NQL G++   +      L  L +S N   G IPK 
Sbjct:   248 NAFTGTLPSSLFTIASL-TSINLRNNQLNGTLEFGNISSPSTLTVLDISNNNFIGPIPKS 306

Query:   283 FGNMCSLITLNLSNNKLSGQLS-EIIQNLSSGCLENSLKSLYLENSLTGV-ISESFFSNI 340
                  +L  L+LS+    G +   I  NL S  L N L  L   N+ T + ++  F S++
Sbjct:   307 ISKFINLQDLDLSHLNTQGPVDFSIFTNLKSLQLLN-LSHL---NTTTTIDLNALFSSHL 362

Query:   341 SNLKELHLANNPL--VLKLSHDWVPPFQLII-ISLSSCKIGPHFPKWLQTQNQIELLDIS 397
             +++  + L+ N +    K+S     P QLI  + LS C I   FP+ L++Q+++  LDIS
Sbjct:   363 NSIYSMDLSGNHVSATTKISVADHHPTQLISQLYLSGCGI-TEFPELLRSQHKMTNLDIS 421

Query:   398 NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIXX 457
             N  I   +P W W L  K  F+DL SN I          F     G + S+ H  GL   
Sbjct:   422 NNKIKGQVPGWLWTLP-KLIFVDL-SNNI----------F----TGFERSTEH--GLSLI 463

Query:   458 XXXXXXXXXXXXXXXXGSI-SFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDS-LVILN 515
                             G I SF+C++  S +T +DLS N L+G +P C     S L  LN
Sbjct:   464 TKPSMQYLVGSNNNFTGKIPSFICALR-SLIT-LDLSDNNLNGSIPPCMGNLKSTLSFLN 521

Query:   516 LENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT 575
             L  N   G +P S+   +++++L + +N+L G+L  SF   S L +L++  N +    P 
Sbjct:   522 LRQNRLGGGLPRSI--FKSLRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDTFPF 579

Query:   576 WMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP-KCFNNFTAM-- 632
             W+  SL  L VL L+SN FHG  P        L++++LS N  SG +P   F N+ AM  
Sbjct:   580 WLS-SLKKLQVLVLRSNAFHG--PIHHASFHTLRIINLSHNQFSGTLPANYFVNWNAMSS 636

Query:   633 ---TQERSSDPTI-------KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEI 682
                T++RS +  +        D ++L  KG E E    L +  +L+ S N L G +P  I
Sbjct:   637 LMATEDRSQEKYMGDSFRYYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSI 696

Query:   683 MDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS 742
               L  L  LNLS N  TG I   +G L+ L+ LD+S+N+L G IP  L  LS L+ M+ S
Sbjct:   697 GLLKELHVLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNFS 756

Query:   743 YNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAA 786
             +N L G +P  TQ +  N + +  NP L G  L   C D  + A
Sbjct:   757 HNQLGGLVPGGTQFRRQNCSSFKDNPGLYGSSLEEVCLDIHAPA 800

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 270/865 (31%), Positives = 388/865 (44%)

Query:     7 NIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKR-----DCCKWTGLRCSNKTNHVI 61
             NI  C  E+R+ALL FK     +        P   K      DCC W G+ C  KT  VI
Sbjct:    26 NIHLCHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSWENGSDCCHWDGITCDAKTGEVI 85

Query:    62 LLDLQPIDFDS-FPLRGTISPAXXXXXXXXXXXXSFNDFSGSPIPEFIGSLSKLRYLDLF 120
              +DL        F     +S              S+N  SG  I   IG+LS L  LDL 
Sbjct:    86 EIDLMCSCLHGWFHSNSNLS-MLQNFHFLTTLDLSYNHLSGQ-ISSSIGNLSHLTTLDLS 143

Query:   121 GTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWF 180
             G  F+G IP  LGNL  L  L L  N  F       L +LSYL +L+L  +N        
Sbjct:   144 GNNFSGWIPSSLGNLFHLTSLHLYDNN-FGGEIPSSLGNLSYLTFLDLSTNNFVGEIP-- 200

Query:   181 QVIGXXXXXXXXXXXXCYLPPVIPXXXXXXXXXXXXXXXVLSDNNLTSSIYPWLPNISSI 240
                G              L   +P                LS N  T ++ P  PNI+S+
Sbjct:   201 SSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEIS---LSHNQFTGTL-P--PNITSL 254

Query:   241 FI--SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCS---LITLNLS 295
              I  S     N   G+IP S   +  +  + L  N+L G +   FGN+ S   L+ L L 
Sbjct:   255 SILESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQLSGTLE--FGNISSPSNLLVLQLG 312

Query:   296 NNKLSG----QLSEIIQ----NLS----SGCLE----NSLK---SLYLE--NSLTGVISE 334
              N L G     +S ++     +LS     G ++    + LK   +LYL   N+ T +   
Sbjct:   313 GNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLN 372

Query:   335 SFFSNISNLKELHLA-NNPLVLKLSHDWVPPFQLI-IISLSSCKIGPHFPKWLQTQNQIE 392
             +  S    L  L L+ N+ LV   S    PP  LI  ++LS C I   FP  L+TQ Q+ 
Sbjct:   373 AVLSCFKMLISLDLSGNHVLVTNKSSVSDPPLGLIGSLNLSGCGI-TEFPDILRTQRQMR 431

Query:   393 LLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFE 452
              LDISN  I   +P W   L  +  ++ +++N   G     +    T  P    S  HF 
Sbjct:   432 TLDISNNKIKGQVPSW---LLLQLEYMHISNNNFIG-FERSTKLEKTVVP--KPSMKHFF 485

Query:   453 GLIXXXXXXXXXXXXXXXXXXGSI-SFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDS- 510
             G                    G I SF+CS+    L  +DLS+N  SG +P C   F S 
Sbjct:   486 G--------------SNNNFSGKIPSFICSLRS--LIILDLSNNNFSGAIPPCVGKFKST 529

Query:   511 LVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALY 570
             L  LNL  N  SG +P ++  ++++++L + +N L G+L  S  + S L +L++  N + 
Sbjct:   530 LSDLNLRRNRLSGSLPKTI--IKSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRIN 587

Query:   571 GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK-CFNNF 629
                P W+  SL  L VL L+SN FHG+I     +   L+++D+S N+ +G +P  CF  +
Sbjct:   588 DTFPFWLS-SLKKLQVLVLRSNAFHGRI--HKTRFPKLRIIDISRNHFNGTLPSDCFVEW 644

Query:   630 TAM-TQERSSDPTIK---------DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP 679
             T M + E++ D   +         D ++L  KG E E    L +  +L+ S N   G +P
Sbjct:   645 TGMHSLEKNEDRFNEKYMGSGYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIP 704

Query:   680 EEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVM 739
               I  L  L  LNLS N  TG I   +G L+ L+ LD+SRN+L G IP  L  LS L+ M
Sbjct:   705 RSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYM 764

Query:   740 DLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRDDADT 799
             + S+N L G++P  TQ ++ + + +  N  LCG PL  +CR        G +E  +    
Sbjct:   765 NFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPL-EECRVVHEPTPSGESETLE---- 819

Query:   800 SEDEDQFIT--LGFYVSLILGFIVG 822
             SE    +I   +GF   ++LG  +G
Sbjct:   820 SEQVLSWIAAAIGFTPGIVLGLTIG 844

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 219/688 (31%), Positives = 332/688 (48%)

Query:   160 LSYLRYLNLDESNLANSSDWFQVIGXXXXXXXXXXXXCYLPPVIPXXXXXXXXXXXXXXX 219
             L +LRYLNL  +N  ++S                    +L  V P               
Sbjct:    96 LQHLRYLNLSNNNFTSASLPSGFGNLNRLEVLYLSSNGFLGQV-PSSFSNLSQLNILD-- 152

Query:   220 VLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGI 279
              LS N LT S +P++ N++ + I + L +N   G+IP S   + +L  L L  N L G I
Sbjct:   153 -LSHNELTGS-FPFVQNLTKLSILV-LSYNHFSGTIPSSLLTLPFLSSLDLRENYLTGSI 209

Query:   280 PKFFGNMCSLIT-LNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFS 338
                  +  S +  + L NN   GQ+ E I  L +  L++ L   +L+ S    I  + FS
Sbjct:   210 EAPNSSTSSRLEFMYLGNNHFEGQILEPISKLIN--LKH-LDLSFLKTSYP--IDLNLFS 264

Query:   339 NISNLKELHLANNPLVL-KLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDIS 397
             +  +L  L L+ N L+   ++ D   P  L  + L SC +   FP  L+   ++E +D+S
Sbjct:   265 SFKSLVRLVLSGNSLLATSITSDSKIPLNLENLVLLSCGL-IEFPTILKNLTKLEHIDLS 323

Query:   398 NTGISDTIPDWFWNLS-----NKFS--FLDLASNQIKGKLPNLSSRFGTSNPGIDISSNH 450
             N  I   +P+WFWNL      N F+  F DL  ++    L N S R       +D++ NH
Sbjct:   324 NNKIKGKVPEWFWNLPRLRRVNLFNNLFTDLEGSE--EVLVNSSVRL------LDLAYNH 375

Query:   451 FEGLIXXXXXXXXXXXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTF-D 509
             F G                    G+I  L + + S L  +DLS N L+G +P C   F +
Sbjct:   376 FRGPFPKPPLSINLLSAWNNSFTGNIP-LETCNRSSLAILDLSYNNLTGPIPRCLSDFQE 434

Query:   510 SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNAL 569
             SL+++NL  N+  G +PD       ++TL +  N+LTG+L  S  NCS LR + +  N +
Sbjct:   435 SLIVVNLRKNNLEGSLPDIFSDGALLRTLDVGYNQLTGKLPRSLLNCSMLRFVSVDHNKI 494

Query:   570 YGEIPTWMGESLSNLIVLSLKSNKFHGKI-PFQLCQLAF--LQVLDLSLNNISGKIP-KC 625
                 P W+ ++L +L  L+L+SNKFHG I P     LAF  L++L++S NN +G +P   
Sbjct:   495 KDTFPFWL-KALPDLQALTLRSNKFHGPISPPDRGPLAFPKLRILEISDNNFTGSLPPNY 553

Query:   626 FNNFTAMTQERSSDPTI------------KDKLMLTWKGSEREYRSTLGLVKSLELSNNN 673
             F N+ A + + + D  I            +D + L +KG   E    L    +++ S N 
Sbjct:   554 FVNWEASSLQMNEDGRIYMGDYNNPYYIYEDTVDLQYKGLFMEQGKVLTSYATIDFSGNK 613

Query:   674 LNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQL 733
             L G +PE I  L  L+ALNLS N  TG I   +  +  L+ LDLSRNQL G IP+ L  L
Sbjct:   614 LEGQIPESIGLLKALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQLSGTIPNGLKTL 673

Query:   734 SGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEG 793
             S L+ + +++N L G+IP  TQ+   + + + GN  LCGLPL   C      A P     
Sbjct:   674 SFLAYISVAHNQLIGEIPQGTQITGQSKSSFEGNAGLCGLPLQGSC-----FAPPTPQPK 728

Query:   794 RDDADTSEDEDQFITLGFYVSLILGFIV 821
              +D D      + + +G++  L+LG I+
Sbjct:   729 EEDEDEEVLNWKAVVIGYWPGLLLGLIM 756

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 216/690 (31%), Positives = 321/690 (46%)

Query:   157 LSHLSYLRYLNLDESNLANSSDWFQVIGXXXXXXXXXXXXCYLPPVIPXXXXXXXXXXXX 216
             L  L  LRYLNL  +N  +SS   +                +   V P            
Sbjct:    86 LFELHQLRYLNLSHNNFTSSSLPSEFSNLTRLEVLSLASSSFTGQV-PSSISNLILLTHL 144

Query:   217 XXXVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIP-ESFQHMVYLEHLRLSFNEL 275
                 LS N LT S +P + N++ +   +DL +NQ  G+IP +    + +L +L L  N L
Sbjct:   145 N---LSHNELTGS-FPPVRNLTKLSF-LDLSYNQFSGAIPFDLLPTLPFLSYLDLKKNHL 199

Query:   276 EGGIPKFFGNMCS-LITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISE 334
              G I     +  S L+ L+L  N+  G++ E I  L +    N L+   L  +++  I  
Sbjct:   200 TGSIDVPNSSSSSKLVRLSLGFNQFEGKIIEPISKLIN---LNHLELASL--NISHPIDL 254

Query:   335 SFFSNISNLKELHLANNPLV-LKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIEL 393
               F+ + +L    +  N L+   LS D   P  LI + L  C I   FP   +T   +E 
Sbjct:   255 RVFAPLKSLLVFDIRQNRLLPASLSSDSEFPLSLISLILIQCDI-IEFPNIFKTLQNLEH 313

Query:   394 LDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEG 453
             +DISN  I   +P+WFW L  + S  +L +N + G   +      +S   +D + N   G
Sbjct:   314 IDISNNLIKGKVPEWFWKLP-RLSIANLVNNSLTGFEGSSEVLLNSSVQLLDFAYNSMTG 372

Query:   454 LIXXXXXXXXXXXXXXXXXXGSISF-LCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLV 512
                                 G+I   +C+   S L  +DLS N  +G +P C     +L 
Sbjct:   373 AFPTPPLGSIYLSAWNNSFTGNIPLSICN--RSSLIVLDLSYNKFTGPIPQC---LSNLK 427

Query:   513 ILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGE 572
             ++NL  NS  G IPD        QTL +  NRLTG+L  S  NCS LR L +  N +   
Sbjct:   428 VVNLRKNSLEGSIPDEFHSGAKTQTLDVGYNRLTGKLPKSLLNCSSLRFLSVDNNRIEDT 487

Query:   573 IPTWMGESLSNLIVLSLKSNKFHGKI-PFQLCQLAF--LQVLDLSLNNISGKIP-KCFNN 628
              P W+ ++L NL VL+L+SN+F G + P     LAF  L++L+LS N+ +G +P   F N
Sbjct:   488 FPFWL-KALPNLHVLTLRSNRFFGHLSPPDRGPLAFPELRILELSDNSFTGSLPPNFFVN 546

Query:   629 FTAMTQERSSDPTI------------KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG 676
             + A + + + D  I            +D + L +KG   E    L    +++ S N L G
Sbjct:   547 WKASSPKINEDGRIYMGDYKNAYYIYEDTMDLQYKGLFMEQGKVLTFYSTIDFSGNKLEG 606

Query:   677 AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGL 736
              +PE I  L  L+ALNLS N  TG I   +  +  L+ LDLSRNQL G IP  L  LS L
Sbjct:   607 QIPESIGLLKELIALNLSNNAFTGHIPMSLANVTELESLDLSRNQLSGNIPRELGSLSFL 666

Query:   737 SVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRDD 796
             + + +++N L G+IP   Q     ++ + GN  LCGLPL   C      A P  T+   +
Sbjct:   667 AYISVAHNQLKGEIPQGPQFSGQAESSFEGNVGLCGLPLQGSC-----VAPP--TKYPKE 719

Query:   797 ADTSEDEDQFIT-----LGFYVSLILGFIV 821
              D  E+ED+ I       G++  L+LG ++
Sbjct:   720 EDEEEEEDEVIEWKAVFFGYWPGLLLGLVM 749

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 242/814 (29%), Positives = 367/814 (45%)

Query:    48 WTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPAXXXXXXXXXXXXSFNDFSGSPIPEF 107
             + G+ C N T  V +L L+  D  S  L+   S              + N+F+ + +P  
Sbjct:    66 FNGVWCDNSTGAVTVLQLR--DCLSGTLKSNSS--LFGFHQLRYLALNRNNFTSASLPSE 121

Query:   108 IGSLSKLRYLDLFGTVFA--------GPIPPQLGNLSRLQHLDLGSNYLFSTGNLD-WLS 158
               +L+KL+ L LF   F         G  P  + NL +L  LDL  N+   T N +  L 
Sbjct:   122 FCNLNKLKLLSLFSNGFIDLSHNDLMGSFP-LVRNLGKLAVLDLSDNHFSGTLNPNNSLF 180

Query:   159 HLSYLRYLNLDESNLANS--SDWFQV--IGXXXXXXXXXXXXCYLPPVIPXXXXXXXXXX 214
              L  LRYLNL  +N+++S  S +  +  +             C+  P I           
Sbjct:   181 ELHSLRYLNLAFNNISSSLPSKFGNLNKLEVLSLSFNGFSGQCF--PTI-------SNLT 231

Query:   215 XXXXXVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNE 274
                   L +N LT S +P + N++ +   + L  N   G+IP        L  L L  N+
Sbjct:   232 RITQLYLHNNELTGS-FPLVQNLTKLSF-LGLSDNLFSGTIPSYLFTFPSLSTLDLREND 289

Query:   275 LEGGIPKFFGNMCS-LITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVIS 333
             L G I     +  S L  + L  N L G++ E I  L +  L+  L   +L  S    I 
Sbjct:   290 LSGSIEVPNSSTSSKLEIMYLGFNHLEGKILEPISKLIN--LKR-LDLSFLNTSYP--ID 344

Query:   334 ESFFSNISNLKELHLANNPLV-LKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQ-TQNQI 391
              +  S + +L  L  + N L    LS     P  +  I LS C I   FP  L+  QN I
Sbjct:   345 LNLLSPLKSLSYLDFSGNSLSPASLSSSSYIPLSMESIVLSLCGIR-EFPNILKHLQNLI 403

Query:   392 ELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHF 451
              + DI++  I   IP+W W L  + SF+D+++N   G   +       S   + + +N+F
Sbjct:   404 HI-DITSNQIKGKIPEWLWTLP-QLSFVDISNNSFNGFQGSAEVFVNLSVRILMLDANNF 461

Query:   452 EGLIXXXXXXXXXXXXXXXXXXGSISF-LCSISGSKLTYVDLSSNLLSGKLPDCWWTFDS 510
             EG +                  G I   +C+   + LT VDLS N  +G +P C   F  
Sbjct:   462 EGALPTLPLSIIGFSAIHNSFTGEIPLSICN--RTSLTMVDLSYNNFTGPIPQCLSNF-- 517

Query:   511 LVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALY 570
              + +NL  N   G IPD+     ++++L +  NRLTG+L  S  NCS LR L +  N + 
Sbjct:   518 -MFVNLRKNDLEGSIPDTFYTDSSLKSLDVGYNRLTGKLPRSLLNCSSLRFLSVDNNRVK 576

Query:   571 GEIPTWMGESLSNLIVLSLKSNKFHGKI-PFQLCQLAF--LQVLDLSLNNISGKIPKCFN 627
                P W+ ++L NL VL+L+SNKF+G I P     L F  L++ +++ N  +G +P  F 
Sbjct:   577 DTFPFWL-KALPNLRVLTLRSNKFYGPISPPHQGPLGFPELRIFEIADNMFTGSLPPSFF 635

Query:   628 -NFTAMTQERSSD---------------P---TIKDKLMLTWKGSEREYRSTLGLVKSLE 668
              N+ A    ++ D               P   T  D + L +KG   E    L    +++
Sbjct:   636 VNWKASALTKNEDGGLYMVYEYDKAANSPVRYTYTDTIDLQYKGLHMEQERVLTSYAAID 695

Query:   669 LSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPS 728
              S N L G +PE I  L  L+ALNLS N  TG I      L +L+ LD+S NQL G IP+
Sbjct:   696 FSGNRLQGQIPESIGLLKALIALNLSNNAFTGHIPLSFANLMNLESLDMSGNQLSGTIPN 755

Query:   729 SLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGP 788
              L  LS L  + +++N L G+IP  TQ+     + + GN  LCGLPL   C D   ++ P
Sbjct:   756 GLGSLSFLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGLCGLPLQETCFD---SSVP 812

Query:   789 GITEGRDDADTSEDED-QFITLGFYVSLILGFIV 821
              I   ++D +  E  + + + +G+   L+ G  +
Sbjct:   813 PIQPKQEDEEKGEVINWKAVAIGYAPGLLFGLAI 846

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 5.5e-64, P = 5.5e-64
 Identities = 234/801 (29%), Positives = 351/801 (43%)

Query:    13 DEEREALLTFKASLV-DESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFD 71
             + E EAL +FK  +  D  GVLS W      R C  WTG+ C + T HV+ + L      
Sbjct:    28 EPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHC-NWTGITCDS-TGHVVSVSLLEKQ-- 83

Query:    72 SFPLRGTISPAXXXXXXXXXXXXSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQ 131
                L G +SPA            + N F+G  IP  IG L++L  L L+   F+G IP  
Sbjct:    84 ---LEGVLSPAIANLTYLQVLDLTSNSFTGK-IPAEIGKLTELNQLILYLNYFSGSIPSG 139

Query:   132 LGNLSRLQHLDLGSNYLFSTGNL-DWLSHLSYLRYLNLDESNLANSSDWFQVIGXXXXXX 190
             +  L  + +LDL +N L  +G++ + +   S L  +  D +NL       + +G      
Sbjct:   140 IWELKNIFYLDLRNNLL--SGDVPEEICKTSSLVLIGFDYNNLTGKIP--ECLGDLVHLQ 195

Query:   191 XXXXXXCYLPPVIPXXXXXXXXXXXXXXXVLSDNNLTSSIYPWLPNISSIFISIDLGFNQ 250
                    +L   IP                LS N LT  I     N+ ++  S+ L  N 
Sbjct:   196 MFVAAGNHLTGSIPVSIGTLANLTDLD---LSGNQLTGKIPRDFGNLLNLQ-SLVLTENL 251

Query:   251 LQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNL 310
             L+G IP    +   L  L L  N+L G IP   GN+  L  L +  NKL+  +   +  L
Sbjct:   252 LEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRL 311

Query:   311 SSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLII 369
             +       L  L L EN L G ISE     + +L+ L L +N    +          L +
Sbjct:   312 TQ------LTHLGLSENHLVGPISEEI-GFLESLEVLTLHSNNFTGEFPQSITNLRNLTV 364

Query:   370 ISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGK 429
             +++    I    P  L     +  L   +  ++  IP    N +     LDL+ NQ+ G+
Sbjct:   365 LTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTG-LKLLDLSHNQMTGE 423

Query:   430 LPNLSSRFGTSNPGIDISSNHFEGLIXXXXXXXXXXXXXXXXXXGSISFLCSISGS--KL 487
             +P    R   +   I I  NHF G I                       L  + G   KL
Sbjct:   424 IPRGFGRMNLTF--ISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKL 481

Query:   488 TYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTG 547
               + +S N L+G +P        L IL L +N F+GRIP  M  L  +Q L +++N L G
Sbjct:   482 RILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEG 541

Query:   548 ELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAF 607
              +     +   L +LDL  N   G+IP    + L +L  LSL+ NKF+G IP  L  L+ 
Sbjct:   542 PIPEEMFDMKLLSVLDLSNNKFSGQIPALFSK-LESLTYLSLQGNKFNGSIPASLKSLSL 600

Query:   608 LQVLDLSLNNISGKIP----------KCFNNF-----TAMTQERSSDPTIKDKLMLT--- 649
             L   D+S N ++G IP          + + NF     T    +      +  ++ L+   
Sbjct:   601 LNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNL 660

Query:   650 WKGSEREYRSTLGLVKSLELSNNNLNGAVPEEI---MDLVGLVALNLSKNHLTGQISPKI 706
             + GS          V +L+ S NNL+G +P+E+   MD++  ++LNLS+N  +G+I    
Sbjct:   661 FSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMI--ISLNLSRNSFSGEIPQSF 718

Query:   707 GQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAG 766
             G +  L  LDLS N L G IP SL+ LS L  + L+ NNL G +P     ++ N +   G
Sbjct:   719 GNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMG 778

Query:   767 NPELCGLPLPNK-CRDEESAA 786
             N +LCG   P K C  ++ ++
Sbjct:   779 NTDLCGSKKPLKPCTIKQKSS 799

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 221/707 (31%), Positives = 317/707 (44%)

Query:    95 SFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNL 154
             S+ND     I + +G+L  LR L L    F G IP  LGNL+ L  LDL  NY   TG L
Sbjct:   161 SYNDDLTGEILDSMGNLKHLRVLSLTSCKFTGKIPSSLGNLTYLTDLDLSWNYF--TGEL 218

Query:   155 -DWLSHLSYLRYLNLDESNLANSSDWFQVIGXXXXXXXXXXXXCYLPPVIPXXXXXXXXX 213
              D + +L  LR LNL   N          +G                   P         
Sbjct:   219 PDSMGNLKSLRVLNLHRCNFFGKIP--TSLGSLSNLTDLDISKNEFTSEGPDSMSSLNRL 276

Query:   214 XXXXXXVLSDNNLTS------SIYPWLP-NISSI--FISIDLGFNQLQGSIPESFQHMVY 264
                   +L+ ++LT+           LP N+SS+    + D+  N   G+IP S   +  
Sbjct:   277 TDFQLMLLNLSSLTNVDLSSNQFKAMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMLPS 336

Query:   265 LEHLRLSFNELEGGIPKFFGNMCS---LITLNLSNNKLSGQLSEIIQNLSSGCLENSLKS 321
             L  L L  N+  G  P   GN+ S   L  L +  N ++G +   I  L  G    SL  
Sbjct:   337 LIKLDLGTNDFSG--PLKIGNISSPSNLQELYIGENNINGPIPRSILKLV-GLSALSLS- 392

Query:   322 LYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHF 381
              + +    G++  S F  + +L+ L L+   L +  SH  +P   + +I LSSC I   F
Sbjct:   393 -FWDTG--GIVDFSIFLQLKSLRSLDLSGINLNISSSHH-LPSHMMHLI-LSSCNIS-QF 446

Query:   382 PKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSN 441
             PK+L+ Q  +  LDIS   I   +P+W W L     ++++A N   G+L  L       N
Sbjct:   447 PKFLENQTSLYHLDISANQIEGQVPEWLWRLPT-LRYVNIAQNAFSGELTMLP------N 499

Query:   442 P--GIDISSNHFEGLIXXXXXXXXXXXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSG 499
             P      S N F G I                  GSI     IS   L+ + L +N LSG
Sbjct:   500 PIYSFIASDNKFSGEIPRAVCEIGTLVLSNNNFSGSIPPCFEISNKTLSILHLRNNSLSG 559

Query:   500 KLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQL 559
              +P+       L  L++ +N  SG+ P S+     +Q L++  NR+     S  ++   L
Sbjct:   560 VIPE-ESLHGYLRSLDVGSNRLSGQFPKSLINCSYLQFLNVEENRINDTFPSWLKSLPNL 618

Query:   560 RLLDLGKNALYGEIPTWMGESLS--NLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNN 617
             +LL L  N  +G I +  G+SLS   L    +  N+F G +P          V+  S  +
Sbjct:   619 QLLVLRSNEFHGPIFS-PGDSLSFSKLRFFDISENRFSGVLPSDY--FVGWSVMS-SFVD 674

Query:   618 ISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREY-RSTLGLVKSLELSNNNLNG 676
             I    P     FT +  ++ S       ++LT KG   E   S   + K++++S N L G
Sbjct:   675 IIDNTP----GFTVVGDDQES---FHKSVVLTIKGLNMELVGSGFEIYKTIDVSGNRLEG 727

Query:   677 AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGL 736
              +PE I  L  L+ LN+S N  TG I P +  L +L  LDLS+N+L G IP  L +L+ L
Sbjct:   728 DIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGELTFL 787

Query:   737 SVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEE 783
             + M+ SYN L G IP  TQ+QS N + +A NP LCG PL  KC  EE
Sbjct:   788 ARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGLCGAPLQKKCGGEE 834

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037814001 SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (996 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	833
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-65
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  236 bits (604), Expect = 1e-65
 Identities = 234/762 (30%), Positives = 338/762 (44%), Gaps = 184/762 (24%)

Query: 14  EEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSF 73
           EE E LL+FK+S+ D    LS+W       D C W G+ C+N ++ V+ +DL   +    
Sbjct: 29  EELELLLSFKSSINDPLKYLSNWNSSA---DVCLWQGITCNN-SSRVVSIDLSGKN---- 80

Query: 74  PLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLG 133
            + G IS A+ +L  ++ +NLS N  SG PIP+ I + S                     
Sbjct: 81  -ISGKISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTS--------------------- 117

Query: 134 NLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLS 193
                                      S LRYLNL  +N   S                 
Sbjct: 118 ---------------------------SSLRYLNLSNNNFTGS----------------- 133

Query: 194 LHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQG 253
                    IP       S  +LETL LS+N L+  I   + + SS+ + +DLG N L G
Sbjct: 134 ---------IPRG-----SIPNLETLDLSNNMLSGEIPNDIGSFSSLKV-LDLGGNVLVG 178

Query: 254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSG 313
            IP S  ++  LE L L+ N+L G IP+  G M SL  + L  N LSG++   I  L+S 
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS- 237

Query: 314 CLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS 373
              N L  +Y  N+LTG I  S   N+ NL+ L L  N    KLS               
Sbjct: 238 --LNHLDLVY--NNLTGPIPSSL-GNLKNLQYLFLYQN----KLS--------------- 273

Query: 374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNL 433
               GP  P     Q  I L D+S+  +S  IP+    L N    L L SN   GK+P  
Sbjct: 274 ----GPIPPSIFSLQKLISL-DLSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGKIP-- 325

Query: 434 SSRFGTSNPGIDIS---SNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYV 490
                TS P + +    SN F G IP         NL K+              + LT +
Sbjct: 326 --VALTSLPRLQVLQLWSNKFSGEIPK--------NLGKH--------------NNLTVL 361

Query: 491 DLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELS 550
           DLS+N L+G++P+   +  +L  L L +NS  G IP S+G  ++++ + L +N  +GEL 
Sbjct: 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Query: 551 SSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQV 610
           S F     +  LD+  N L G I +   + + +L +LSL  NKF G +P        L+ 
Sbjct: 422 SEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLP-DSFGSKRLEN 479

Query: 611 LDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELS 670
           LDLS N  SG +P+   + + + Q                                L+LS
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQ--------------------------------LKLS 507

Query: 671 NNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSL 730
            N L+G +P+E+     LV+L+LS N L+GQI     ++  L  LDLS+NQL G IP +L
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Query: 731 SQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCG 772
             +  L  +++S+N+L G +P+     + N +  AGN +LCG
Sbjct: 568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 88.7 bits (220), Expect = 4e-18
 Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 10/144 (6%)

Query: 650 WKGSEREYRSTLG--LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIG 707
           W G++ ++ ST G   +  L L N  L G +P +I  L  L ++NLS N + G I P +G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 708 QLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVT-----QLQSFNDT 762
            + SL+ LDLS N   G IP SL QL+ L +++L+ N+LSG++P           SFN T
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523

Query: 763 VYAGNPELCGLPLPNKCRDEESAA 786
               N  LCG+P    C    S  
Sbjct: 524 ---DNAGLCGIPGLRACGPHLSVG 544

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 3e-11
 Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 506 WTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG 565
           W  D L    L+N    G IP+ +  L+++Q+++L  N + G +  S  + + L +LDL 
Sbjct: 418 WFIDGL---GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS 474

Query: 566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP 599
            N+  G IP  +G+ L++L +L+L  N   G++P
Sbjct: 475 YNSFNGSIPESLGQ-LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 48  WTGLRC---SNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPI 104
           W+G  C   S K    I      +  D+  LRG I   + KL  L+ +NLS N   G+ I
Sbjct: 404 WSGADCQFDSTKGKWFI----DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-I 458

Query: 105 PEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYL 148
           P  +GS++ L  LDL    F G IP  LG L+ L+ L+L  N L
Sbjct: 459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 6e-09
 Identities = 28/89 (31%), Positives = 45/89 (50%)

Query: 490 VDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGEL 549
           + L +  L G +P+       L  +NL  NS  G IP S+G + +++ L L  N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 550 SSSFRNCSQLRLLDLGKNALYGEIPTWMG 578
             S    + LR+L+L  N+L G +P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 24/67 (35%), Positives = 43/67 (64%)

Query: 486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRL 545
            L  ++LS N + G +P    +  SL +L+L  NSF+G IP+S+G L +++ L+L+ N L
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Query: 546 TGELSSS 552
           +G + ++
Sbjct: 503 SGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 4e-08
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQ 302
           SI+L  N ++G+IP S   +  LE L LS+N   G IP+  G + SL  LNL+ N LSG+
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 303 L 303
           +
Sbjct: 506 V 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 9/86 (10%)

Query: 452 EGLIPPLPSNSSFL------NLSKNRFSGSISF-LCSISGSKLTYVDLSSNLLSGKLPDC 504
           +GL   +P++ S L      NLS N   G+I   L SI+   L  +DLS N  +G +P+ 
Sbjct: 428 QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS--LEVLDLSYNSFNGSIPES 485

Query: 505 WWTFDSLVILNLENNSFSGRIPDSMG 530
                SL ILNL  NS SGR+P ++G
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 3/44 (6%)

Query: 12 IDEEREALLTFKASLV-DESGVLSSWGPEDEKRDCCKWTGLRCS 54
          ++++R+ALL FK+SL  D SG LSSW P     D C WTG+ C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSS--SDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 39/145 (26%)

Query: 587 LSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKL 646
           L L +    G IP  + +L  LQ ++LS N+I G IP    + T++              
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE------------- 469

Query: 647 MLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI 706
                               L+LS N+ NG++PE +  L  L  LNL+ N L+G++   +
Sbjct: 470 -------------------VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Query: 707 GQL----KSLDFLDLSRNQLVGGIP 727
           G       S +F D   N  + GIP
Sbjct: 511 GGRLLHRASFNFTD---NAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 6e-07
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 236 NISSIFIS-IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNL 294
                FI  + L    L+G IP     + +L+ + LS N + G IP   G++ SL  L+L
Sbjct: 414 TKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL 473

Query: 295 SNNKLSGQLSEIIQNLSSGCLENSLKSLYLE-NSLTG 330
           S N  +G + E +  L+      SL+ L L  NSL+G
Sbjct: 474 SYNSFNGSIPESLGQLT------SLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 65  LQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVF 124
           LQ I+     +RG I P+L  +  L  L+LS+N F+GS IPE +G L+ LR L+L G   
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSL 502

Query: 125 AGPIPPQLGNLSRLQH 140
           +G +P  LG   RL H
Sbjct: 503 SGRVPAALG--GRLLH 516

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 216 LETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNEL 275
           L+++ LS N++  +I P L +I+S+   +DL +N   GSIPES   +  L  L L+ N L
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSL-EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Query: 276 EGGIPKFFG 284
            G +P   G
Sbjct: 503 SGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 79/256 (30%), Positives = 116/256 (45%), Gaps = 19/256 (7%)

Query: 507 TFDSLVILNLENNSFSGR--IPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564
           +   L+ L+L + S        +++  L  + +L L+ NRL   +S      + L  LDL
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLEL-TNLTSLDL 123

Query: 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK 624
             N +  +IP  +G   SNL  L L  NK    +P  L  L  L+ LDLS N++S  +PK
Sbjct: 124 DNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPK 180

Query: 625 CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD 684
             +N + +     S   I D        S  E          L+LSNN++   +   + +
Sbjct: 181 LLSNLSNLNNLDLSGNKISDLPPEIELLSALE---------ELDLSNNSII-ELLSSLSN 230

Query: 685 LVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN 744
           L  L  L LS N L       IG L +L+ LDLS NQ+     SSL  L+ L  +DLS N
Sbjct: 231 LKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGN 287

Query: 745 NLSGKIPTVTQLQSFN 760
           +LS  +P +  L    
Sbjct: 288 SLSNALPLIALLLLLL 303

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 43/157 (27%), Positives = 61/157 (38%), Gaps = 19/157 (12%)

Query: 482 ISGSKLTYVDLSSNLLSGKLPDCWWTF---DSLVILNLENNSFSGR----IPDSMGFLQ- 533
             G  L  +DLS N L         +     SL  L L NN    R    +   +  L  
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 534 NIQTLSLHNNRLTGE----LSSSFRNCSQLRLLDLGKNALYGEIPTWMGESL---SNLIV 586
            ++ L L  NRL G     L+ + R    L+ L+L  N +       + E L    NL V
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 587 LSLKSNKFHGKIPFQLC----QLAFLQVLDLSLNNIS 619
           L L +N    +    L      L  L+VL+L  NN++
Sbjct: 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 50/222 (22%)

Query: 255 IPESFQHMVYLEHLRLSFNELEGGIPK-------FFGNMCSLITLNLSNNKLSGQLSEII 307
           +  + +    L+ L LS NE  G IP+            C L  L+LS+N L      ++
Sbjct: 43  LASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101

Query: 308 QNLSSGC------LENS--------------------LKSLYLE-NSLTGVISESF---F 337
           ++L          L N+                    L+ L L  N L G   E+     
Sbjct: 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161

Query: 338 SNISNLKELHLANNPL----VLKLSHDWVPPFQLIIISLSSCKIGPH----FPKWLQTQN 389
               +LKEL+LANN +    +  L+        L ++ L++  +         + L +  
Sbjct: 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221

Query: 390 QIELLDISNTGISD----TIPDWFWNLSNKFSFLDLASNQIK 427
            +E+L++ +  ++D     +     + +     L L+ N I 
Sbjct: 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 562 LDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK 621
           L L    L G IP  + + L +L  ++L  N   G IP  L  +  L+VLDLS N+ +G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 622 IPKCFNNFTAM 632
           IP+     T++
Sbjct: 482 IPESLGQLTSL 492

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 22/225 (9%)

Query: 145 SNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIP 204
           S  L S   +  L     L  L    S   N +     I +L  L  L+        +  
Sbjct: 71  SLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITD 130

Query: 205 LSLNHLNSSTSLETLVLSDNNLTSSIYP--WLPNISSIFISIDLGFNQLQGSIPESFQHM 262
           +        ++L+ L LSDN + S   P   LPN+     ++DL FN L   +P+   ++
Sbjct: 131 IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLK----NLDLSFNDLS-DLPKLLSNL 185

Query: 263 VYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNN----------KLSGQLSEIIQNLSS 312
             L +L LS N++   +P     + +L  L+LSNN           L       + N   
Sbjct: 186 SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244

Query: 313 GCLENSLKSL----YLENSLTGVISESFFSNISNLKELHLANNPL 353
             L  S+ +L     L+ S   + S S   +++NL+EL L+ N L
Sbjct: 245 EDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSL 289

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 265 LEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL 324
           L+ L LS N L       F  + +L  L+LS N L+    E    L       SL+SL L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLP------SLRSLDL 55

Query: 325 EN 326
             
Sbjct: 56  SG 57

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 70/251 (27%), Positives = 112/251 (44%), Gaps = 17/251 (6%)

Query: 104 IPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYL 163
             E + +L  L  LDL        I   L  L+ L  LDL +N +     L  L   + L
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSN-L 142

Query: 164 RYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSD 223
           + L+L ++ + +       +  L +LK L L    L  +  L  N     ++L  L LS 
Sbjct: 143 KELDLSDNKIESLPSP---LRNLPNLKNLDLSFNDLSDLPKLLSN----LSNLNNLDLSG 195

Query: 224 NNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFF 283
           N ++    P    + S    +DL  N +   +  S  ++  L  L LS N+LE  +P+  
Sbjct: 196 NKISD--LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESI 251

Query: 284 GNMCSLITLNLSNNKLSGQLSEI--IQNLSSGCL-ENSLKSLYLENSLTGVISESFFSNI 340
           GN+ +L TL+LSNN++S  +S +  + NL    L  NSL +     +L  ++ E   + +
Sbjct: 252 GNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLL 310

Query: 341 SNLKELHLANN 351
             LK L L  N
Sbjct: 311 LTLKALELKLN 321

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKL 299
           S+DL  N+L      +F+ +  L+ L LS N L    P+ F  + SL +L+LS N L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 288 SLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELH 347
           +L +L+LSNN+L+       + L +      LK L L  +    IS   FS + +L+ L 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPN------LKVLDLSGNNLTSISPEAFSGLPSLRSLD 54

Query: 348 LANNPL 353
           L+ N L
Sbjct: 55  LSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	833
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
PLN03150	623	hypothetical protein; Provisional	99.54
PLN03150	623	hypothetical protein; Provisional	99.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.87
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.86
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.15
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.99
KOG4341	483	consensus F-box protein containing LRR [General fu	97.94
PRK15386	426	type III secretion protein GogB; Provisional	97.92
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.84
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.83
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.79
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.74
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.71
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.52
PRK15386	426	type III secretion protein GogB; Provisional	97.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.33
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.23
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.22
KOG4341	483	consensus F-box protein containing LRR [General fu	96.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.78
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.29
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.21
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.74
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.81
KOG4308	478	consensus LRR-containing protein [Function unknown	93.24
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.69
KOG4308	478	consensus LRR-containing protein [Function unknown	92.5
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.94
smart00370	26	LRR Leucine-rich repeats, outliers.	87.94
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.67
smart00370	26	LRR Leucine-rich repeats, outliers.	87.67
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.69

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2e-72  Score=687.10  Aligned_cols=584  Identities=36%  Similarity=0.549  Sum_probs=413.4

Q ss_pred             CHHHHHHHHHhhhcCcCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCE
Q 048006           12 IDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRH   91 (833)
Q Consensus        12 ~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~   91 (833)
                      .++|+.||++||+++.+|.+.+.+|.   .+.+||.|+||+|+. .++|+.|+|++     +.++|.+++++..+++|++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~-----~~i~~~~~~~~~~l~~L~~   97 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG-----KNISGKISSAIFRLPYIQT   97 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC-----CCccccCChHHhCCCCCCE
Confidence            57899999999999988888899997   467999999999985 57999999998     7888999999999999999


Q ss_pred             EeCCCCCCCCCCcccccc-CCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCC
Q 048006           92 LNLSFNDFSGSPIPEFIG-SLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDE  170 (833)
Q Consensus        92 L~Ls~n~~~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~  170 (833)
                      |+|++|++++. +|..+. .+++|++|+|++|.+++.+|.  +.+++|++|+|++|.+.. .                  
T Consensus        98 L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~-~------------------  155 (968)
T PLN00113         98 INLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSG-E------------------  155 (968)
T ss_pred             EECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccc-c------------------
Confidence            99999999875 777654 899999999999999988885  457778888888777643 2                  


Q ss_pred             CCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCcc
Q 048006          171 SNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQ  250 (833)
Q Consensus       171 n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~  250 (833)
                              +|..++.+++|++|++++|.+.+.+|.  .+... ++|++|++++|.+.+.+|..+.++.+ |++|++++|.
T Consensus       156 --------~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~  223 (968)
T PLN00113        156 --------IPNDIGSFSSLKVLDLGGNVLVGKIPN--SLTNL-TSLEFLTLASNQLVGQIPRELGQMKS-LKWIYLGYNN  223 (968)
T ss_pred             --------CChHHhcCCCCCEEECccCcccccCCh--hhhhC-cCCCeeeccCCCCcCcCChHHcCcCC-ccEEECcCCc
Confidence                    233344444444444444444444443  22222 44445555555444444444444444 5555555555


Q ss_pred             ccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEccccccc
Q 048006          251 LQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTG  330 (833)
Q Consensus       251 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~  330 (833)
                      +++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|++.+.+|..+..+                    
T Consensus       224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--------------------  283 (968)
T PLN00113        224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL--------------------  283 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc--------------------
Confidence            555555555555555555555555555555555555555555555555554444433332                    


Q ss_pred             ccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHH
Q 048006          331 VISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFW  410 (833)
Q Consensus       331 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~  410 (833)
                                ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|.++..+++|+.|++++|.+.+.+|..+.
T Consensus       284 ----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  353 (968)
T PLN00113        284 ----------QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG  353 (968)
T ss_pred             ----------cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence                      3333333333333322222222222233333333333334444444445555555544444444333322


Q ss_pred             hhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEE
Q 048006          411 NLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYV  490 (833)
Q Consensus       411 ~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  490 (833)
                      .                                                                        +++|+.|
T Consensus       354 ~------------------------------------------------------------------------~~~L~~L  361 (968)
T PLN00113        354 K------------------------------------------------------------------------HNNLTVL  361 (968)
T ss_pred             C------------------------------------------------------------------------CCCCcEE
Confidence            2                                                                        2455666


Q ss_pred             EcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccC
Q 048006          491 DLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALY  570 (833)
Q Consensus       491 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  570 (833)
                      ++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..|..+++|+.|++++|.+.
T Consensus       362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  441 (968)
T PLN00113        362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ  441 (968)
T ss_pred             ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence            66666666666666666667777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEee
Q 048006          571 GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTW  650 (833)
Q Consensus       571 ~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~  650 (833)
                      +.+|..+. .+++|++|++++|++.+.+|..+ ..++|+.|++++|++++..|..+.++++|                  
T Consensus       442 ~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L------------------  501 (968)
T PLN00113        442 GRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL------------------  501 (968)
T ss_pred             CccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc------------------
Confidence            76666555 57778888888887777777655 45789999999999998888888777666                  


Q ss_pred             ccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccc
Q 048006          651 KGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSL  730 (833)
Q Consensus       651 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  730 (833)
                                    +.|+|++|++.+.+|..+.++++|++|+|++|.+++.+|..|+.+++|+.|||++|++++.+|..+
T Consensus       502 --------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  567 (968)
T PLN00113        502 --------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL  567 (968)
T ss_pred             --------------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence                          889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCC
Q 048006          731 SQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       731 ~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      ..+++|++|++++|+++|.+|..+++.++....+.|||.+||.+
T Consensus       568 ~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             hcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.1e-57  Score=554.91  Aligned_cols=518  Identities=33%  Similarity=0.482  Sum_probs=377.4

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccC-CccccceecccCccCCCCCCcccccCCCCCcE
Q 048006           87 HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLG-NLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRY  165 (833)
Q Consensus        87 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  165 (833)
                      .+++.|+|++|.+++. +|..+..+++|++|+|++|.+.+.+|..+. .+++|++|+|++|.+..               
T Consensus        69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~---------------  132 (968)
T PLN00113         69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG---------------  132 (968)
T ss_pred             CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc---------------
Confidence            4688899999988885 788888889999999998888877776554 66777777776665532               


Q ss_pred             EecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEE
Q 048006          166 LNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISID  245 (833)
Q Consensus       166 L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~  245 (833)
                                  .+|  .+.+++|++|++++|.+.+.+|.  .+... ++|++|++++|.+.+.+|..+.++++ |++|+
T Consensus       133 ------------~~p--~~~l~~L~~L~Ls~n~~~~~~p~--~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~  194 (968)
T PLN00113        133 ------------SIP--RGSIPNLETLDLSNNMLSGEIPN--DIGSF-SSLKVLDLGGNVLVGKIPNSLTNLTS-LEFLT  194 (968)
T ss_pred             ------------ccC--ccccCCCCEEECcCCcccccCCh--HHhcC-CCCCEEECccCcccccCChhhhhCcC-CCeee
Confidence                        011  12345555555555555554443  22222 45555555555554444444444444 44444


Q ss_pred             ccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcc
Q 048006          246 LGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLE  325 (833)
Q Consensus       246 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~  325 (833)
                      +++|.+++.+|..++.+++|++|++++|++++.+|..++++++|++|++++|.+++.+|.                    
T Consensus       195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--------------------  254 (968)
T PLN00113        195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS--------------------  254 (968)
T ss_pred             ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh--------------------
Confidence            444444444444444444444444444444444444444444444444444444433332                    


Q ss_pred             cccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCcccccc
Q 048006          326 NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTI  405 (833)
Q Consensus       326 ~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~  405 (833)
                                .|.++++|++|++++|.+.+.                        +|..+..+++|++|++++|.+.+.+
T Consensus       255 ----------~l~~l~~L~~L~L~~n~l~~~------------------------~p~~l~~l~~L~~L~Ls~n~l~~~~  300 (968)
T PLN00113        255 ----------SLGNLKNLQYLFLYQNKLSGP------------------------IPPSIFSLQKLISLDLSDNSLSGEI  300 (968)
T ss_pred             ----------hHhCCCCCCEEECcCCeeecc------------------------CchhHhhccCcCEEECcCCeeccCC
Confidence                      345555666666666665544                        4444555555555555555555555


Q ss_pred             chhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCC
Q 048006          406 PDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGS  485 (833)
Q Consensus       406 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  485 (833)
                      |..+..+. +|++|++++|.+.+.+|...                                               ..++
T Consensus       301 p~~~~~l~-~L~~L~l~~n~~~~~~~~~~-----------------------------------------------~~l~  332 (968)
T PLN00113        301 PELVIQLQ-NLEILHLFSNNFTGKIPVAL-----------------------------------------------TSLP  332 (968)
T ss_pred             ChhHcCCC-CCcEEECCCCccCCcCChhH-----------------------------------------------hcCC
Confidence            55444332 45555555544443333210                                               0136


Q ss_pred             cccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccC
Q 048006          486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG  565 (833)
Q Consensus       486 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  565 (833)
                      +|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|+++
T Consensus       333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~  412 (968)
T PLN00113        333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ  412 (968)
T ss_pred             CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence            78889999999998899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccc
Q 048006          566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDK  645 (833)
Q Consensus       566 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  645 (833)
                      +|++++.+|..+. .++.|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+. .                
T Consensus       413 ~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~----------------  474 (968)
T PLN00113        413 DNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S----------------  474 (968)
T ss_pred             CCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c----------------
Confidence            9999999998776 699999999999999999999899999999999999999988886542 2                


Q ss_pred             eEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCccc
Q 048006          646 LMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGG  725 (833)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  725 (833)
                                      ++|+.|++++|++++.+|..+..+++|++|+|++|++++.+|+.+.++++|++|+|++|++++.
T Consensus       475 ----------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  538 (968)
T PLN00113        475 ----------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ  538 (968)
T ss_pred             ----------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc
Confidence                            2459999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCC
Q 048006          726 IPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       726 ~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      +|..+..+++|+.||+++|+++|.+|.. ..+..+..+++.+|+..+..|
T Consensus       539 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             CChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            9999999999999999999999999975 556677888899998776444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-40  Score=335.18  Aligned_cols=401  Identities=24%  Similarity=0.236  Sum_probs=287.9

Q ss_pred             CCEEEccCCcCCCCCCCccc-ccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEc
Q 048006          216 LETLVLSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNL  294 (833)
Q Consensus       216 L~~L~Ls~n~l~~~~~~~l~-~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  294 (833)
                      -+.||.+++.+.......+. -++.-.+.||+++|++....+..|.++++|+++++.+|.++ .+|..-....+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            34556666655432111111 11111567999999999888888999999999999999998 57876666777999999


Q ss_pred             cCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccC
Q 048006          295 SNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSS  374 (833)
Q Consensus       295 s~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  374 (833)
                      .+|.|+..-.+.++.++      .|+.|||+-|.+.+|+...|..-.++++|+|++|.|+....+.|..+.+|.+|.|+.
T Consensus       133 ~~N~I~sv~se~L~~l~------alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr  206 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALP------ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR  206 (873)
T ss_pred             eccccccccHHHHHhHh------hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence            99999988888888888      888888888888888887888778888888888888877777777777777777777


Q ss_pred             ccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCccccc
Q 048006          375 CKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGL  454 (833)
Q Consensus       375 ~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~  454 (833)
                      |.++...+..|+++++|+.|+|..|+|.-.---                                               
T Consensus       207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~l-----------------------------------------------  239 (873)
T KOG4194|consen  207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL-----------------------------------------------  239 (873)
T ss_pred             CcccccCHHHhhhcchhhhhhccccceeeehhh-----------------------------------------------
Confidence            777766666666677766666666665411111                                               


Q ss_pred             CCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCC
Q 048006          455 IPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQN  534 (833)
Q Consensus       455 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  534 (833)
                                               .+.++++|+.|.+..|.+.......|..+.++++|+|+.|++...-..++.+++.
T Consensus       240 -------------------------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~  294 (873)
T KOG4194|consen  240 -------------------------TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS  294 (873)
T ss_pred             -------------------------hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence                                     1112366677777777777666777888888888888888888777777788888


Q ss_pred             ccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEecc
Q 048006          535 IQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLS  614 (833)
Q Consensus       535 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls  614 (833)
                      |+.|++++|.|..+-++++..+++|++|+|+.|+|+ .+++..+..+..|++|+|++|.++..-...|..+++|+.|||+
T Consensus       295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             hhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence            888888888888777888888888888888888887 6766666577888888888888876666677788888888888


Q ss_pred             CCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECC
Q 048006          615 LNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLS  694 (833)
Q Consensus       615 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  694 (833)
                      +|.++..+.+.                                                     ...|.++++|+.|+|.
T Consensus       374 ~N~ls~~IEDa-----------------------------------------------------a~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  374 SNELSWCIEDA-----------------------------------------------------AVAFNGLPSLRKLRLT  400 (873)
T ss_pred             CCeEEEEEecc-----------------------------------------------------hhhhccchhhhheeec
Confidence            88887654432                                                     1224445556666666


Q ss_pred             CccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCC
Q 048006          695 KNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKI  750 (833)
Q Consensus       695 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  750 (833)
                      +|++......+|.++++|++|||.+|.|..+-|.+|..+ .|+.|-+..-.+-|.+
T Consensus       401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC  455 (873)
T ss_pred             CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence            666654444566666666666666666666666666666 5666665544444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-38  Score=324.74  Aligned_cols=274  Identities=24%  Similarity=0.267  Sum_probs=230.3

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      .+|..|.|+.|+++...+..|.++++|+.|+|..|+|.-.---.|.++++|+.|.|..|.+.......|..+.++++|+|
T Consensus       197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL  276 (873)
T ss_pred             chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence            56778888888888777777888899999999999888554567888999999999999999888888999999999999


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD  644 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  644 (833)
                      +.|++...-..|++ ++++|+.|+|++|.|....++.+...++|++|+|++|+|+...+.+|..+..|            
T Consensus       277 ~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L------------  343 (873)
T KOG4194|consen  277 ETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL------------  343 (873)
T ss_pred             ccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh------------
Confidence            99999854556777 79999999999999998888899999999999999999997777778777666            


Q ss_pred             ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCc---ccCCCCCCCEEeCCCCc
Q 048006          645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISP---KIGQLKSLDFLDLSRNQ  721 (833)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~  721 (833)
                                          ++|.|++|.+...-...|..+++|++|||++|.+++.|.+   .|.+|++|+.|+|.+|+
T Consensus       344 --------------------e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq  403 (873)
T KOG4194|consen  344 --------------------EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ  403 (873)
T ss_pred             --------------------hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence                                8899999999877777889999999999999999977764   47889999999999999


Q ss_pred             CcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCC----------------CCCCCCCCC
Q 048006          722 LVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLP----------------NKCRDEESA  785 (833)
Q Consensus       722 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~----------------~~c~~~~~~  785 (833)
                      +..+.-.+|.++..|+.||+.+|.+...-|..-....++++.+..-..+|+|++.                ..|..|+..
T Consensus       404 lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~L  483 (873)
T KOG4194|consen  404 LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPL  483 (873)
T ss_pred             eeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCccc
Confidence            9977778999999999999999999876665422226667777667789999742                469888877


Q ss_pred             CCCCCc
Q 048006          786 AGPGIT  791 (833)
Q Consensus       786 ~~~~~~  791 (833)
                      ++..+.
T Consensus       484 ad~~i~  489 (873)
T KOG4194|consen  484 ADQSIV  489 (873)
T ss_pred             ccceeE
Confidence            765554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.6e-41  Score=329.69  Aligned_cols=494  Identities=26%  Similarity=0.345  Sum_probs=258.9

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEE
Q 048006           87 HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYL  166 (833)
Q Consensus        87 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  166 (833)
                      ..++.|++++|.+..  +-+.+.++..|.+|++.+|+++ .+|.+++.+.+++.|+.++|.+.  ..++.++.+.+|+++
T Consensus        45 v~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l  119 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKL  119 (565)
T ss_pred             cchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhh
Confidence            346666777776663  4455666777777777777766 56667777777777777777664  233334444444444


Q ss_pred             ecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEc
Q 048006          167 NLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDL  246 (833)
Q Consensus       167 ~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~L  246 (833)
                      ++++|.+..   +++.++.+..|+.++..+|+++.                            .|+.+..+.+ +..+++
T Consensus       120 ~~s~n~~~e---l~~~i~~~~~l~dl~~~~N~i~s----------------------------lp~~~~~~~~-l~~l~~  167 (565)
T KOG0472|consen  120 DCSSNELKE---LPDSIGRLLDLEDLDATNNQISS----------------------------LPEDMVNLSK-LSKLDL  167 (565)
T ss_pred             hccccceee---cCchHHHHhhhhhhhcccccccc----------------------------CchHHHHHHH-HHHhhc
Confidence            444444333   23344444444444444444433                            3344444444 555555


Q ss_pred             cCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEccc
Q 048006          247 GFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLEN  326 (833)
Q Consensus       247 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~  326 (833)
                      .+|+++...|..+. ++.|++||...|.++ .+|+.++.+.+|+.|+|.+|++... | .|..+.      .|++++++.
T Consensus       168 ~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs------~L~Elh~g~  237 (565)
T KOG0472|consen  168 EGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL-P-EFPGCS------LLKELHVGE  237 (565)
T ss_pred             cccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC-C-CCCccH------HHHHHHhcc
Confidence            55555544333333 666666666666555 3555566666666666666665422 2 344544      566666666


Q ss_pred             ccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccc
Q 048006          327 SLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIP  406 (833)
Q Consensus       327 ~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~  406 (833)
                      |++..+|+....+++++.+||+.+|++.                         ..|..+.-+++|++||+|+|.|+ ..|
T Consensus       238 N~i~~lpae~~~~L~~l~vLDLRdNklk-------------------------e~Pde~clLrsL~rLDlSNN~is-~Lp  291 (565)
T KOG0472|consen  238 NQIEMLPAEHLKHLNSLLVLDLRDNKLK-------------------------EVPDEICLLRSLERLDLSNNDIS-SLP  291 (565)
T ss_pred             cHHHhhHHHHhcccccceeeeccccccc-------------------------cCchHHHHhhhhhhhcccCCccc-cCC
Confidence            6666666655666666667776666665                         44555555566666666666665 334


Q ss_pred             hhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCc
Q 048006          407 DWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSK  486 (833)
Q Consensus       407 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  486 (833)
                      ..++++  .|+.|.+.+|++...-.+......                 ...   |                      +.
T Consensus       292 ~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT-----------------~~v---L----------------------Ky  327 (565)
T KOG0472|consen  292 YSLGNL--HLKFLALEGNPLRTIRREIISKGT-----------------QEV---L----------------------KY  327 (565)
T ss_pred             cccccc--eeeehhhcCCchHHHHHHHHcccH-----------------HHH---H----------------------HH
Confidence            444444  455555555555421000000000                 000   0                      00


Q ss_pred             ccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCC--CCcEecc
Q 048006          487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCS--QLRLLDL  564 (833)
Q Consensus       487 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L  564 (833)
                      |+. .+..-.++..  +. +.   -..-+    ...+..| ......+.+.|++++-+++....+.|....  -....++
T Consensus       328 Lrs-~~~~dglS~s--e~-~~---e~~~t----~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnf  395 (565)
T KOG0472|consen  328 LRS-KIKDDGLSQS--EG-GT---ETAMT----LPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNF  395 (565)
T ss_pred             HHH-hhccCCCCCC--cc-cc---cccCC----CCCCccc-chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEec
Confidence            000 0000000000  00 00   00000    0000000 111223344444444444422222222111  1445566


Q ss_pred             CCCccCCCCCcchhhcCCccc-eEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006          565 GKNALYGEIPTWMGESLSNLI-VLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK  643 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~-~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  643 (833)
                      +.|++. ++|..+.. +..+. .+.+++|.+. .+|..++.+++|..|+|++|.+. .+|..++.+..|           
T Consensus       396 skNqL~-elPk~L~~-lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L-----------  460 (565)
T KOG0472|consen  396 SKNQLC-ELPKRLVE-LKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL-----------  460 (565)
T ss_pred             ccchHh-hhhhhhHH-HHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhh-----------
Confidence            666665 56655442 33332 3344444443 55666666666666666666665 555555554444           


Q ss_pred             cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006          644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV  723 (833)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  723 (833)
                                           +.||+|.|+|. .+|..+..+..++.+-.++|++....|+.+.++.+|..|||.+|.+.
T Consensus       461 ---------------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq  518 (565)
T KOG0472|consen  461 ---------------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ  518 (565)
T ss_pred             ---------------------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence                                 66777777666 67777766666776666777777666666777788888888888877


Q ss_pred             ccCCccccCCCCCCEEECcCCcCc
Q 048006          724 GGIPSSLSQLSGLSVMDLSYNNLS  747 (833)
Q Consensus       724 ~~~p~~l~~l~~L~~L~ls~N~l~  747 (833)
                       .+|..++++++|++|++++|+|+
T Consensus       519 -~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  519 -QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             -hCChhhccccceeEEEecCCccC
Confidence             67777888888888888888877

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-39  Score=317.92  Aligned_cols=431  Identities=26%  Similarity=0.354  Sum_probs=286.9

Q ss_pred             CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEE
Q 048006          214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN  293 (833)
Q Consensus       214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  293 (833)
                      ..++.++.++|+++ .+|+.+..+.+ ++.++.++|.+. ..|++++.+..|+.++..+|+++ ..|+.+.++.+|..++
T Consensus        91 ~~l~~l~vs~n~ls-~lp~~i~s~~~-l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~  166 (565)
T KOG0472|consen   91 EALKSLNVSHNKLS-ELPEQIGSLIS-LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLD  166 (565)
T ss_pred             HHHHHhhcccchHh-hccHHHhhhhh-hhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhh
Confidence            44444444454443 34444555555 666666666666 44566777777777777777777 4666677777777777


Q ss_pred             ccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEcc
Q 048006          294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS  373 (833)
Q Consensus       294 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  373 (833)
                      +.+|++....|..+. ++      .|+.++...|..+.+|+ .++.+.+|+.|++..|++..                  
T Consensus       167 ~~~n~l~~l~~~~i~-m~------~L~~ld~~~N~L~tlP~-~lg~l~~L~~LyL~~Nki~~------------------  220 (565)
T KOG0472|consen  167 LEGNKLKALPENHIA-MK------RLKHLDCNSNLLETLPP-ELGGLESLELLYLRRNKIRF------------------  220 (565)
T ss_pred             ccccchhhCCHHHHH-HH------HHHhcccchhhhhcCCh-hhcchhhhHHHHhhhccccc------------------
Confidence            877777766666555 66      67777777777777777 36677777777777776652                  


Q ss_pred             CccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccc
Q 048006          374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEG  453 (833)
Q Consensus       374 ~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~  453 (833)
                             .| .|.++..|+++.++.|.|. .+|.......+++..||+.+|+++. .|.                     
T Consensus       221 -------lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pd---------------------  269 (565)
T KOG0472|consen  221 -------LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPD---------------------  269 (565)
T ss_pred             -------CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-Cch---------------------
Confidence                   33 3555555666666666554 4444444333344445444444441 111                     


Q ss_pred             cCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCc-
Q 048006          454 LIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFL-  532 (833)
Q Consensus       454 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-  532 (833)
                                              ..|.  +.+|++||+|+|.|+ .+|..++++ .|+.|.+.+|.+..+-.+.+..- 
T Consensus       270 ------------------------e~cl--LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT  321 (565)
T KOG0472|consen  270 ------------------------EICL--LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGT  321 (565)
T ss_pred             ------------------------HHHH--hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccH
Confidence                                    1111  356777888888887 456677777 88888888887753211111110 


Q ss_pred             -CCccEEE-------cccCcCc----cc-cCc---cccCCCCCcEeccCCCccCCCCCcchhhcCC--ccceEEecCCcc
Q 048006          533 -QNIQTLS-------LHNNRLT----GE-LSS---SFRNCSQLRLLDLGKNALYGEIPTWMGESLS--NLIVLSLKSNKF  594 (833)
Q Consensus       533 -~~L~~L~-------L~~n~l~----~~-~~~---~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~--~L~~L~L~~N~l  594 (833)
                       .-|++|.       ++...-.    +. .+.   ......+.+.|++++-+++ .+|..+|+.-.  -....+++.|++
T Consensus       322 ~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL  400 (565)
T KOG0472|consen  322 QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQL  400 (565)
T ss_pred             HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchH
Confidence             0122221       1111000    00 111   1223456778888888887 78887774221  266788888888


Q ss_pred             cccccccccCCCCCCE-EeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCc
Q 048006          595 HGKIPFQLCQLAFLQV-LDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNN  673 (833)
Q Consensus       595 ~~~~~~~l~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  673 (833)
                      . .+|..+..+..+.+ +++++|.+ +-+|..+..+++                                +..|+|++|-
T Consensus       401 ~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~k--------------------------------Lt~L~L~NN~  446 (565)
T KOG0472|consen  401 C-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQK--------------------------------LTFLDLSNNL  446 (565)
T ss_pred             h-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhc--------------------------------ceeeecccch
Confidence            7 67777776666654 34555544 355555554444                                4899999999


Q ss_pred             CCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006          674 LNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       674 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  753 (833)
                      +. .+|.+++.+..|+.||+|+|+|. .+|..+..+..++.+-.++|++....|+.+.++.+|++||+.+|.+...+|..
T Consensus       447 Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~L  524 (565)
T KOG0472|consen  447 LN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPIL  524 (565)
T ss_pred             hh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhh
Confidence            98 89999999999999999999998 88999988889999999999999888888999999999999999999888888


Q ss_pred             cccCccccccccCCCCC
Q 048006          754 TQLQSFNDTVYAGNPEL  770 (833)
Q Consensus       754 ~~~~~l~~~~~~gn~~l  770 (833)
                      +.+..+.++.+.|||+-
T Consensus       525 gnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  525 GNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccceeEEEecCCccC
Confidence            99999999999999973

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-35  Score=319.31  Aligned_cols=289  Identities=28%  Similarity=0.372  Sum_probs=175.2

Q ss_pred             eecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCccc
Q 048006           77 GTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDW  156 (833)
Q Consensus        77 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~  156 (833)
                      ..||..+..-..++.|+++.|-+-..+ -+++.+..+|+.||+|+|+++ ..|..+..+.+|+.|+++.|.|.  ..+..
T Consensus        11 ~~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~--~vp~s   86 (1081)
T KOG0618|consen   11 ELIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR--SVPSS   86 (1081)
T ss_pred             cccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh--hCchh
Confidence            345666666667889999998776533 245556666999999999987 78999999999999999999886  34466


Q ss_pred             ccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccc
Q 048006          157 LSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPN  236 (833)
Q Consensus       157 l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~  236 (833)
                      ..++.+|++|.|..|.+..   +|..+..+++|++|+++.|.+.. +|.  .+... +.++.+..++|.-...    ++.
T Consensus        87 ~~~~~~l~~lnL~~n~l~~---lP~~~~~lknl~~LdlS~N~f~~-~Pl--~i~~l-t~~~~~~~s~N~~~~~----lg~  155 (1081)
T KOG0618|consen   87 CSNMRNLQYLNLKNNRLQS---LPASISELKNLQYLDLSFNHFGP-IPL--VIEVL-TAEEELAASNNEKIQR----LGQ  155 (1081)
T ss_pred             hhhhhcchhheeccchhhc---CchhHHhhhcccccccchhccCC-Cch--hHHhh-hHHHHHhhhcchhhhh----hcc
Confidence            7788888888888887766   56677788888888888877744 343  22222 5566666666621111    111


Q ss_pred             cccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCcccc
Q 048006          237 ISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLE  316 (833)
Q Consensus       237 l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~  316 (833)
                      ..  ++.+++..|.+.+.++.++..++.  .|+|.+|.+..   ..+.++.+|+.+....|++.                
T Consensus       156 ~~--ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls----------------  212 (1081)
T KOG0618|consen  156 TS--IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLS----------------  212 (1081)
T ss_pred             cc--chhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccc----------------
Confidence            11  455555555555555555544444  45555555541   22444555555555555443                


Q ss_pred             CCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEee
Q 048006          317 NSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDI  396 (833)
Q Consensus       317 ~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L  396 (833)
                                    .+.    -.-++|+.|+.+.|.++...  .-.-+.+|++++++.+++. .+|+|+..+.+|+.++.
T Consensus       213 --------------~l~----~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~  271 (1081)
T KOG0618|consen  213 --------------ELE----ISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNA  271 (1081)
T ss_pred             --------------eEE----ecCcchheeeeccCcceeec--cccccccceeeecchhhhh-cchHHHHhcccceEecc
Confidence                          221    13456677777777666211  1122345666666666665 34477777777777777


Q ss_pred             cCCccccccchhHHhhcccccEEEcccccc
Q 048006          397 SNTGISDTIPDWFWNLSNKFSFLDLASNQI  426 (833)
Q Consensus       397 s~n~i~~~~~~~~~~~~~~L~~L~L~~n~l  426 (833)
                      .+|.++ .+|..+.... +|+.|....|.+
T Consensus       272 n~N~l~-~lp~ri~~~~-~L~~l~~~~nel  299 (1081)
T KOG0618|consen  272 NHNRLV-ALPLRISRIT-SLVSLSAAYNEL  299 (1081)
T ss_pred             cchhHH-hhHHHHhhhh-hHHHHHhhhhhh
Confidence            666663 3343333322 344444444433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-35  Score=321.42  Aligned_cols=465  Identities=24%  Similarity=0.279  Sum_probs=318.6

Q ss_pred             cEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCcccc
Q 048006           59 HVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRL  138 (833)
Q Consensus        59 ~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  138 (833)
                      .++.|++..     +.+-...-+.+.+.-+|+.||+++|.+.  ++|..+..+.+|+.|+++.|.|. ..|.+.+++.+|
T Consensus        22 ~~~~ln~~~-----N~~l~~pl~~~~~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l   93 (1081)
T KOG0618|consen   22 ALQILNLRR-----NSLLSRPLEFVEKRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNL   93 (1081)
T ss_pred             HHHhhhccc-----cccccCchHHhhheeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcc
Confidence            466677766     2221111123444445999999999998  58889999999999999999998 788999999999


Q ss_pred             ceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCE
Q 048006          139 QHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLET  218 (833)
Q Consensus       139 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~  218 (833)
                      ++|.|.+|.+.  ..+..+..+++|++|++++|.+..   +|..+..++.+..+..++|......+.        ..++.
T Consensus        94 ~~lnL~~n~l~--~lP~~~~~lknl~~LdlS~N~f~~---~Pl~i~~lt~~~~~~~s~N~~~~~lg~--------~~ik~  160 (1081)
T KOG0618|consen   94 QYLNLKNNRLQ--SLPASISELKNLQYLDLSFNHFGP---IPLVIEVLTAEEELAASNNEKIQRLGQ--------TSIKK  160 (1081)
T ss_pred             hhheeccchhh--cCchhHHhhhcccccccchhccCC---CchhHHhhhHHHHHhhhcchhhhhhcc--------ccchh
Confidence            99999999986  677889999999999999999987   566788888999999999833332222        44888


Q ss_pred             EEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCC
Q 048006          219 LVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNK  298 (833)
Q Consensus       219 L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  298 (833)
                      +++..|.+.+.++..+..+..   .|+|.+|.+..   ..+..+.+|+.|....|++...    --.-++|+.|+.++|.
T Consensus       161 ~~l~~n~l~~~~~~~i~~l~~---~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~  230 (1081)
T KOG0618|consen  161 LDLRLNVLGGSFLIDIYNLTH---QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNP  230 (1081)
T ss_pred             hhhhhhhcccchhcchhhhhe---eeecccchhhh---hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCc
Confidence            999999999888888777644   69999999982   3567888999999999988742    2245789999999999


Q ss_pred             CCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCC
Q 048006          299 LSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIG  378 (833)
Q Consensus       299 l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~  378 (833)
                      ++...+.        ..+.+|+.++++.+....+| +++..+.+|+.++..+|.+ ...+.......+|+.|.+..|.+.
T Consensus       231 l~~~~~~--------p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~  300 (1081)
T KOG0618|consen  231 LTTLDVH--------PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE  300 (1081)
T ss_pred             ceeeccc--------cccccceeeecchhhhhcch-HHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh
Confidence            8733321        12338999999999999999 6899999999999999998 455666777788888888888887


Q ss_pred             CCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCC
Q 048006          379 PHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPL  458 (833)
Q Consensus       379 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~  458 (833)
                       .+|.....++.|++|+|..|++....+..+.....++..++.+.|++.. .|...                        
T Consensus       301 -yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~------------------------  354 (1081)
T KOG0618|consen  301 -YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYE------------------------  354 (1081)
T ss_pred             -hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-ccccc------------------------
Confidence             5666677788888888888888744333333222235555555555441 11000                        


Q ss_pred             CCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEE
Q 048006          459 PSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTL  538 (833)
Q Consensus       459 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  538 (833)
                                            ....+.|+.|++.+|.+++.....+.++..|+.|+|++|++.......+.++..|+.|
T Consensus       355 ----------------------e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL  412 (1081)
T KOG0618|consen  355 ----------------------ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL  412 (1081)
T ss_pred             ----------------------chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH
Confidence                                  0002445555555555555554555555555555555555553333344555555555


Q ss_pred             EcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccc-ccccccCCCCCCEEeccCCc
Q 048006          539 SLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGK-IPFQLCQLAFLQVLDLSLNN  617 (833)
Q Consensus       539 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~  617 (833)
                      +||+|+++ .+|.....++.|++|...+|.+. .+| .+. .++.|+.+|++.|+++.. +|... ..++|++||+++|.
T Consensus       413 ~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~-~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  413 NLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA-QLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             hcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh-hcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            55555555 34455555555555555555555 555 222 355555555555555522 22221 12555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5e-33  Score=287.44  Aligned_cols=369  Identities=27%  Similarity=0.398  Sum_probs=247.2

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCc
Q 048006           85 KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLR  164 (833)
Q Consensus        85 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  164 (833)
                      -++..|-.|+++|.++|..+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++..              
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~--------------   69 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS--------------   69 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh--------------
Confidence            35567788999999998889999999999999999998887 789999999999999888887642              


Q ss_pred             EEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCC-CCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcE
Q 048006          165 YLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPP-VIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFIS  243 (833)
Q Consensus       165 ~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~  243 (833)
                                    +...++.++.|+.+.+..|++.. -+|.  .++.. ..|+.||||+|++. ..|..+....+ +..
T Consensus        70 --------------vhGELs~Lp~LRsv~~R~N~LKnsGiP~--diF~l-~dLt~lDLShNqL~-EvP~~LE~AKn-~iV  130 (1255)
T KOG0444|consen   70 --------------VHGELSDLPRLRSVIVRDNNLKNSGIPT--DIFRL-KDLTILDLSHNQLR-EVPTNLEYAKN-SIV  130 (1255)
T ss_pred             --------------hhhhhccchhhHHHhhhccccccCCCCc--hhccc-ccceeeecchhhhh-hcchhhhhhcC-cEE
Confidence                          22344455555555555554421 2333  33333 55555555555554 23444444444 455


Q ss_pred             EEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEE
Q 048006          244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLY  323 (833)
Q Consensus       244 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~  323 (833)
                      |+||+|+|..+.-.-|-+++.|-.|||++|++. .+|..+..+..|++|+|++|.+.                       
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-----------------------  186 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-----------------------  186 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-----------------------
Confidence            555555555332223345555555555555554 23444445555555555555432                       


Q ss_pred             cccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCcccc
Q 048006          324 LENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISD  403 (833)
Q Consensus       324 L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  403 (833)
                             ...-..+..+++|++|.+++.+-+.                       .-+|..+..+.+|..+|+|.|.+. 
T Consensus       187 -------hfQLrQLPsmtsL~vLhms~TqRTl-----------------------~N~Ptsld~l~NL~dvDlS~N~Lp-  235 (1255)
T KOG0444|consen  187 -------HFQLRQLPSMTSLSVLHMSNTQRTL-----------------------DNIPTSLDDLHNLRDVDLSENNLP-  235 (1255)
T ss_pred             -------HHHHhcCccchhhhhhhcccccchh-----------------------hcCCCchhhhhhhhhccccccCCC-
Confidence                   1111123345556666666543321                       145666667777777777777765 


Q ss_pred             ccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccccccccccccc
Q 048006          404 TIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSIS  483 (833)
Q Consensus       404 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  483 (833)
                      ..|+.+..+. +|+.|+|++|+|+..--.                                              .  ..
T Consensus       236 ~vPecly~l~-~LrrLNLS~N~iteL~~~----------------------------------------------~--~~  266 (1255)
T KOG0444|consen  236 IVPECLYKLR-NLRRLNLSGNKITELNMT----------------------------------------------E--GE  266 (1255)
T ss_pred             cchHHHhhhh-hhheeccCcCceeeeecc----------------------------------------------H--HH
Confidence            5666666554 566666666666521000                                              0  00


Q ss_pred             CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCccc-ccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEe
Q 048006          484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFS-GRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL  562 (833)
Q Consensus       484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  562 (833)
                      ..+|++|++|.|+++ .+|+++..++.|+.|.+.+|+++ .-+|..++.+.+|+.+...+|.+. ..|++++.|.+|+.|
T Consensus       267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL  344 (1255)
T ss_pred             Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence            367888999999998 78999999999999999999876 357888999999999999999988 789999999999999


Q ss_pred             ccCCCccCCCCCcchhhcCCccceEEecCCccc
Q 048006          563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH  595 (833)
Q Consensus       563 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~  595 (833)
                      .|+.|++. .+|+.+. -++.|+.||+..|.-.
T Consensus       345 ~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  345 KLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNL  375 (1255)
T ss_pred             ccccccee-echhhhh-hcCCcceeeccCCcCc
Confidence            99999998 8999887 5899999999999644

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.2e-32  Score=284.71  Aligned_cols=380  Identities=25%  Similarity=0.358  Sum_probs=228.5

Q ss_pred             EEEccCcccc-ccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccE
Q 048006          243 SIDLGFNQLQ-GSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKS  321 (833)
Q Consensus       243 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~  321 (833)
                      -.|+++|.++ +..|.....++.++.|.|...++. .+|+.++.+.+|++|.+++|++..... .+              
T Consensus        11 GvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG-EL--------------   74 (1255)
T KOG0444|consen   11 GVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG-EL--------------   74 (1255)
T ss_pred             cccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh-hh--------------
Confidence            3344444444 234455555555555555555554 355555555555555555555442211 11              


Q ss_pred             EEcccccccccChhhhcCCCCCCEEECcCCcccc-ccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCc
Q 048006          322 LYLENSLTGVISESFFSNISNLKELHLANNPLVL-KLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTG  400 (833)
Q Consensus       322 L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~  400 (833)
                                      ..++.|+.+.+..|++.. -+|.++..+..|++|+|++|+++ ..|..+...+++-.|+||+|.
T Consensus        75 ----------------s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~  137 (1255)
T KOG0444|consen   75 ----------------SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNN  137 (1255)
T ss_pred             ----------------ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCc
Confidence                            222233333333333221 11222223333333333333333 556666666777777777777


Q ss_pred             cccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccc
Q 048006          401 ISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLC  480 (833)
Q Consensus       401 i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  480 (833)
                      |. .+|..++-....|-+|||++|++....|..  ..                                           
T Consensus       138 Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~--RR-------------------------------------------  171 (1255)
T KOG0444|consen  138 IE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQI--RR-------------------------------------------  171 (1255)
T ss_pred             cc-cCCchHHHhhHhHhhhccccchhhhcCHHH--HH-------------------------------------------
Confidence            76 334333322235556666666655333322  00                                           


Q ss_pred             cccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCccc-ccCCCCccCcCCccEEEcccCcCccccCccccCCCCC
Q 048006          481 SISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFS-GRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQL  559 (833)
Q Consensus       481 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  559 (833)
                         +..|++|+|++|.+...--..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|+|.|.+. ..|+.+.++++|
T Consensus       172 ---L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L  247 (1255)
T KOG0444|consen  172 ---LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL  247 (1255)
T ss_pred             ---HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh
Confidence               245667777777665333334455677888888876543 356778888888888888888887 778888888888


Q ss_pred             cEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcc-cCCccccccccccccCCC
Q 048006          560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG-KIPKCFNNFTAMTQERSS  638 (833)
Q Consensus       560 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~  638 (833)
                      +.|+||+|+|+ .+..... ...+|++|+++.|+++ .+|..++.++.|+.|.+.+|+++- -+|..++.+..|      
T Consensus       248 rrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L------  318 (1255)
T KOG0444|consen  248 RRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL------  318 (1255)
T ss_pred             heeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh------
Confidence            88888888887 5655555 3567888888888887 678888888888888888887753 356666666555      


Q ss_pred             CcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCC
Q 048006          639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLS  718 (833)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  718 (833)
                                                +.+..++|.+. ..|+.+..|..|+.|.|++|++. ..|+++.-++.|+.||+.
T Consensus       319 --------------------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr  370 (1255)
T KOG0444|consen  319 --------------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR  370 (1255)
T ss_pred             --------------------------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence                                      66677777776 77888888888888888888877 677788778888888888


Q ss_pred             CCcCcccCCccccCCCCCCEEECc
Q 048006          719 RNQLVGGIPSSLSQLSGLSVMDLS  742 (833)
Q Consensus       719 ~N~l~~~~p~~l~~l~~L~~L~ls  742 (833)
                      .|.-.-..|.--..-+.|+.-++.
T Consensus       371 eNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  371 ENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             CCcCccCCCCcchhhhcceeeecc
Confidence            877553333322222455544443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=9.1e-27  Score=229.76  Aligned_cols=98  Identities=21%  Similarity=0.179  Sum_probs=87.6

Q ss_pred             cccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCcc
Q 048006          473 SGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSS  552 (833)
Q Consensus       473 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  552 (833)
                      .+.-|..++.++++|++|++++|+++++-+.+|.+...+++|.|..|++...-...|.++..|++|+|.+|+|+...|.+
T Consensus       262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a  341 (498)
T KOG4237|consen  262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA  341 (498)
T ss_pred             CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence            33455666667899999999999999999999999999999999999999777788999999999999999999999999


Q ss_pred             ccCCCCCcEeccCCCccC
Q 048006          553 FRNCSQLRLLDLGKNALY  570 (833)
Q Consensus       553 ~~~l~~L~~L~L~~n~l~  570 (833)
                      |..+.+|..|++-.|++-
T Consensus       342 F~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  342 FQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             ccccceeeeeehccCccc
Confidence            999999999999998765

>PLN03210 Resistant to P

Probab=99.89  E-value=1.4e-21  Score=239.23  Aligned_cols=341  Identities=22%  Similarity=0.228  Sum_probs=217.7

Q ss_pred             cccccCCCCCcEEEccCCCC------CchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCcc
Q 048006          280 PKFFGNMCSLITLNLSNNKL------SGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL  353 (833)
Q Consensus       280 p~~l~~l~~L~~L~Ls~n~l------~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l  353 (833)
                      +.+|..+++|+.|.+..+..      ...+|..+..++.     +|+.|++.++....+|.. | ...+|++|++.+|.+
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~-----~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l  623 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP-----KLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKL  623 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCc-----ccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccc
Confidence            34577788888888765532      2234555555442     677777777777777763 3 467788888887776


Q ss_pred             ccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCcc
Q 048006          354 VLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNL  433 (833)
Q Consensus       354 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  433 (833)
                      .. .+..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+. +|+.|++++|...+.+|..
T Consensus       624 ~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~-~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        624 EK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN-KLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             cc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccC-CCCEEeCCCCCCcCccCCc
Confidence            53 344556667777777776654445553 56667777777777655555565554443 5555555554332222211


Q ss_pred             ccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcE
Q 048006          434 SSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVI  513 (833)
Q Consensus       434 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  513 (833)
                                                                    .  .+++|+.|++++|.....+|..   ..+|+.
T Consensus       701 ----------------------------------------------i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~  729 (1153)
T PLN03210        701 ----------------------------------------------I--NLKSLYRLNLSGCSRLKSFPDI---STNISW  729 (1153)
T ss_pred             ----------------------------------------------C--CCCCCCEEeCCCCCCccccccc---cCCcCe
Confidence                                                          0  1366777777777655455532   357888


Q ss_pred             EEccCCcccccCCCCccCcCCccEEEcccCcCc-------cccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccce
Q 048006          514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT-------GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIV  586 (833)
Q Consensus       514 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~  586 (833)
                      |++++|.+. .+|..+ .+++|++|.+.++...       ...+..+...++|+.|++++|...+.+|..+. ++++|+.
T Consensus       730 L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~  806 (1153)
T PLN03210        730 LDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEH  806 (1153)
T ss_pred             eecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCE
Confidence            888888876 455544 4677888877764322       11122223345777777777776667777665 5777777


Q ss_pred             EEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccE
Q 048006          587 LSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKS  666 (833)
Q Consensus       587 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  666 (833)
                      |++++|...+.+|..+ .+++|+.|++++|.....+|..                                   .++++.
T Consensus       807 L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------------------------------~~nL~~  850 (1153)
T PLN03210        807 LEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----------------------------------STNISD  850 (1153)
T ss_pred             EECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------------------------ccccCE
Confidence            7777775544566554 5777777777776544333321                                   234578


Q ss_pred             EEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCc
Q 048006          667 LELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQ  721 (833)
Q Consensus       667 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  721 (833)
                      |+|++|.++ .+|..+..+++|++|+|++|+--..+|..+..+++|+.|++++|.
T Consensus       851 L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        851 LNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             eECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            888888887 678888888888888888854333577778888888888888886

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=2.6e-24  Score=212.51  Aligned_cols=282  Identities=25%  Similarity=0.235  Sum_probs=144.3

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEccc-CcCccccCccccCCCCCcEec
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHN-NRLTGELSSSFRNCSQLRLLD  563 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  563 (833)
                      +.-+.++|..|+|+.+.+.+|..+++|+.|||++|.|+.+-|++|.++++|..|.+.+ |+|+......|.++.+|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            3455666666666666666677777777777777777766677777776666665555 666666666677777777777


Q ss_pred             cCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcc------------cCCcccccccc
Q 048006          564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG------------KIPKCFNNFTA  631 (833)
Q Consensus       564 L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~------------~~p~~~~~l~~  631 (833)
                      +.-|++. -++...+..++++..|.+..|.+...-...+..+.+++.+.+..|++..            ..|..++....
T Consensus       147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             cChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            7777766 5555555566777777777776663333356666677777776666321            11111111111


Q ss_pred             ccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCc-hhhhcccCCcEEECCCccccccCCcccCCCC
Q 048006          632 MTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP-EEIMDLVGLVALNLSKNHLTGQISPKIGQLK  710 (833)
Q Consensus       632 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  710 (833)
                      .....+....+...       ....+......+.+=..+.+...+..| ..|..+++|+.|+|++|+++++-+.+|.++.
T Consensus       226 ~~p~rl~~~Ri~q~-------~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a  298 (498)
T KOG4237|consen  226 VSPYRLYYKRINQE-------DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA  298 (498)
T ss_pred             cchHHHHHHHhccc-------chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence            11000000000000       000000000011111111222222222 2455555555555555555555555555555


Q ss_pred             CCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCC
Q 048006          711 SLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       711 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      .++.|+|..|+|...--..|.++..|++|++.+|+|+..-|.. .....+..+.+.+|||.|+|.
T Consensus       299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~  363 (498)
T KOG4237|consen  299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR  363 (498)
T ss_pred             hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence            5555555555555444455555555555555555555544422 122223344455566655554

>PLN03210 Resistant to P

Probab=99.87  E-value=4.2e-21  Score=234.94  Aligned_cols=339  Identities=19%  Similarity=0.193  Sum_probs=242.3

Q ss_pred             ChhhcccccccEEeecCCc------cccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccC
Q 048006          382 PKWLQTQNQIELLDISNTG------ISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLI  455 (833)
Q Consensus       382 ~~~l~~l~~L~~L~Ls~n~------i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~  455 (833)
                      +.+|.++++|+.|.+..+.      +...+|..+...+.+|+.|.+.++.+. .+|..  ....+|..|++.++.+....
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~--f~~~~L~~L~L~~s~l~~L~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSN--FRPENLVKLQMQGSKLEKLW  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCc--CCccCCcEEECcCccccccc
Confidence            4456667777777775543      223456666666666777777777665 33432  23457777777777765432


Q ss_pred             CC--CCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcC
Q 048006          456 PP--LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQ  533 (833)
Q Consensus       456 ~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  533 (833)
                      ..  .+.+|+.++++++.....+|....  +++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ +++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~--l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPDLSM--ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCcccc--CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            22  256788888887765566665433  5888999998887666788888888899999998876555667655 688


Q ss_pred             CccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccc-------ccccccccCCC
Q 048006          534 NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH-------GKIPFQLCQLA  606 (833)
Q Consensus       534 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~-------~~~~~~l~~l~  606 (833)
                      +|++|++++|...+.+|..   .++|++|++++|.+. .+|..+  .+++|++|++.++...       ...+......+
T Consensus       705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccc
Confidence            8899999888766566643   457888889888886 777765  3778888888764321       11122233456


Q ss_pred             CCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhccc
Q 048006          607 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLV  686 (833)
Q Consensus       607 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~  686 (833)
                      +|+.|++++|...+.+|..++++++|+.++++++......+..         ..+++|+.|++++|.....+|..   .+
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---------~~L~sL~~L~Ls~c~~L~~~p~~---~~  846 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---------INLESLESLDLSGCSRLRTFPDI---ST  846 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---------CCccccCEEECCCCCcccccccc---cc
Confidence            7888888888877788888888888888888776432222111         14678899999998766566643   36


Q ss_pred             CCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCc
Q 048006          687 GLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNN  745 (833)
Q Consensus       687 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  745 (833)
                      +|++|+|++|.++ .+|.++..+++|+.|+|++|+-...+|..+..+++|+.+++++|.
T Consensus       847 nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        847 NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            7999999999998 689999999999999999966555688888999999999999985

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=6.2e-21  Score=215.60  Aligned_cols=262  Identities=29%  Similarity=0.340  Sum_probs=152.8

Q ss_pred             cccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCC
Q 048006          390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSK  469 (833)
Q Consensus       390 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~  469 (833)
                      .-..|+++++.++ .+|..+.   .+++.|++.+|+++. +|                         ..+++|+.|++++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP-------------------------~lp~~Lk~LdLs~  251 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LP-------------------------ALPPELRTLEVSG  251 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CC-------------------------CCCCCCcEEEecC
Confidence            3456777777776 4555443   256677777766663 33                         2234445555555


Q ss_pred             CcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCcccc
Q 048006          470 NRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGEL  549 (833)
Q Consensus       470 n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  549 (833)
                      |+++.. |..    .++|+.|++++|.++. +|..   ..+|+.|++++|+++. +|.   .+++|+.|++++|++++ +
T Consensus       252 N~LtsL-P~l----p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-L  317 (788)
T PRK15387        252 NQLTSL-PVL----PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-L  317 (788)
T ss_pred             CccCcc-cCc----ccccceeeccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-C
Confidence            544432 211    1455666666666552 2322   2345666666666653 332   23556666666666664 2


Q ss_pred             CccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccc
Q 048006          550 SSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNF  629 (833)
Q Consensus       550 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  629 (833)
                      |..   ..+|+.|++++|.++ .+|..    ..+|++|+|++|++++ +|..   ..+|+.|++++|++++ +|...   
T Consensus       318 p~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---  381 (788)
T PRK15387        318 PAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---  381 (788)
T ss_pred             CCC---cccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---
Confidence            321   134556666666665 45541    2456667777776663 3432   2456666677776652 33211   


Q ss_pred             ccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCC
Q 048006          630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQL  709 (833)
Q Consensus       630 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  709 (833)
                                                      ++|+.|++++|+|++ +|..   .++|+.|++++|++++ +|...   
T Consensus       382 --------------------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---  421 (788)
T PRK15387        382 --------------------------------SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---  421 (788)
T ss_pred             --------------------------------cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---
Confidence                                            234777788887773 5533   2567778888888773 55432   


Q ss_pred             CCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCC
Q 048006          710 KSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPT  752 (833)
Q Consensus       710 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  752 (833)
                      .+|+.|++++|+|+ .+|..+.++++|+.|++++|+|+|.+|.
T Consensus       422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            45677888888887 6777777888888888888888877664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=6.6e-21  Score=215.43  Aligned_cols=267  Identities=27%  Similarity=0.360  Sum_probs=177.6

Q ss_pred             cccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCcee
Q 048006          366 QLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGID  445 (833)
Q Consensus       366 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~  445 (833)
                      .-..|+++.+.++ .+|..+.  ++|+.|++++|+++. +|.    ..++|++|++++|+++. +|..    ..+|+.|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~----lp~~Lk~LdLs~N~Lts-LP~l----p~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLTS-LPVL----PPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC----CCCCCcEEEecCCccCc-ccCc----ccccceee
Confidence            4567899999998 5676664  489999999999985 443    23579999999998873 3321    22444445


Q ss_pred             cccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccC
Q 048006          446 ISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRI  525 (833)
Q Consensus       446 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  525 (833)
                      ++.|.+... |..+                         .+|+.|++++|+++. +|.   ..++|+.|++++|++++ +
T Consensus       269 Ls~N~L~~L-p~lp-------------------------~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-L  317 (788)
T PRK15387        269 IFSNPLTHL-PALP-------------------------SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-L  317 (788)
T ss_pred             ccCCchhhh-hhch-------------------------hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-C
Confidence            554444322 1122                         456667777777663 333   23567777777777774 3


Q ss_pred             CCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCC
Q 048006          526 PDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQL  605 (833)
Q Consensus       526 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l  605 (833)
                      |..   ...|+.|++++|++++ +|..   ..+|++|++++|+++ .+|..    ..+|+.|++++|++++ +|..   .
T Consensus       318 p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~  381 (788)
T PRK15387        318 PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---P  381 (788)
T ss_pred             CCC---cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---c
Confidence            332   2356677777777764 4431   246778888888877 56652    3567777888888773 5543   3


Q ss_pred             CCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcc
Q 048006          606 AFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDL  685 (833)
Q Consensus       606 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l  685 (833)
                      .+|+.|++++|++++ +|...                                   +.|+.|++++|+++ .+|...   
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l~-----------------------------------s~L~~LdLS~N~Ls-sIP~l~---  421 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVLP-----------------------------------SELKELMVSGNRLT-SLPMLP---  421 (788)
T ss_pred             cccceEEecCCcccC-CCCcc-----------------------------------cCCCEEEccCCcCC-CCCcch---
Confidence            467888888888763 44321                                   22477888888887 466533   


Q ss_pred             cCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCC
Q 048006          686 VGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQL  733 (833)
Q Consensus       686 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  733 (833)
                      .+|+.|++++|+|+ .+|..+.++++|+.|+|++|++++..|..+..+
T Consensus       422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            35777888888887 678888888888888888888888877766443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=3.4e-19  Score=203.20  Aligned_cols=204  Identities=25%  Similarity=0.439  Sum_probs=98.0

Q ss_pred             cccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccC
Q 048006          486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG  565 (833)
Q Consensus       486 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  565 (833)
                      +|++|++++|+++ .+|..+.  .+|+.|+|++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|+++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence            4555555555554 2333222  24555555555555 3333332  34555555555555 2333332  345555555


Q ss_pred             CCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccc
Q 048006          566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDK  645 (833)
Q Consensus       566 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  645 (833)
                      +|+++ .+|..+.   ++|+.|++++|+++. +|..+  .++|+.|++++|.+++ +|..+                   
T Consensus       292 ~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l-------------------  344 (754)
T PRK15370        292 DNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL-------------------  344 (754)
T ss_pred             CCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh-------------------
Confidence            55555 4444322   245555555555552 33322  1455555555555542 33221                   


Q ss_pred             eEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCccc
Q 048006          646 LMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGG  725 (833)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  725 (833)
                                     +++|+.|++++|+++ .+|..+.  +.|++|+|++|+++ .+|..+.  ..|+.|++++|+++ .
T Consensus       345 ---------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~  402 (754)
T PRK15370        345 ---------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-R  402 (754)
T ss_pred             ---------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-c
Confidence                           122355566666555 3444332  45566666666655 3444433  24556666666655 3


Q ss_pred             CCccc----cCCCCCCEEECcCCcCc
Q 048006          726 IPSSL----SQLSGLSVMDLSYNNLS  747 (833)
Q Consensus       726 ~p~~l----~~l~~L~~L~ls~N~l~  747 (833)
                      +|..+    ..++.+..+++.+|+++
T Consensus       403 LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        403 LPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CchhHHHHhhcCCCccEEEeeCCCcc
Confidence            33332    22355556666666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=8.5e-19  Score=200.00  Aligned_cols=246  Identities=24%  Similarity=0.372  Sum_probs=155.5

Q ss_pred             cccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCC
Q 048006          390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSK  469 (833)
Q Consensus       390 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~  469 (833)
                      +...|++++++++. +|..+.   ..++.|++++|+++. +|.                        ..+.+|+.|++++
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip---~~L~~L~Ls~N~Lts-LP~------------------------~l~~nL~~L~Ls~  229 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP---EQITTLILDNNELKS-LPE------------------------NLQGNIKTLYANS  229 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc---cCCcEEEecCCCCCc-CCh------------------------hhccCCCEEECCC
Confidence            45677777777763 444332   357777777777663 332                        1223455555555


Q ss_pred             CcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCcccc
Q 048006          470 NRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGEL  549 (833)
Q Consensus       470 n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  549 (833)
                      |+++.. |...   ...|+.|++++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|++|++++|++++ +
T Consensus       230 N~LtsL-P~~l---~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-L  298 (754)
T PRK15370        230 NQLTSI-PATL---PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-L  298 (754)
T ss_pred             CccccC-Chhh---hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-C
Confidence            555432 2111   145777777777776 4455443  46777888877777 3555443  477888888887774 4


Q ss_pred             CccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccc
Q 048006          550 SSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNF  629 (833)
Q Consensus       550 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  629 (833)
                      |..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  
T Consensus       299 P~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--  366 (754)
T PRK15370        299 PAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--  366 (754)
T ss_pred             cccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--
Confidence            44332  46778888888887 566543   3578888888888774 565553  67888888888876 3454321  


Q ss_pred             ccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCccc---
Q 048006          630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI---  706 (833)
Q Consensus       630 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---  706 (833)
                                                      +.|+.|+|++|+++ .+|..+.  ..|+.|++++|+++ .+|..+   
T Consensus       367 --------------------------------~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~  410 (754)
T PRK15370        367 --------------------------------PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHF  410 (754)
T ss_pred             --------------------------------CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHH
Confidence                                            23478888888887 5666554  35778888888887 455543   


Q ss_pred             -CCCCCCCEEeCCCCcCc
Q 048006          707 -GQLKSLDFLDLSRNQLV  723 (833)
Q Consensus       707 -~~l~~L~~L~Ls~N~l~  723 (833)
                       +.++.+..|++.+|+++
T Consensus       411 ~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        411 RGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhcCCCccEEEeeCCCcc
Confidence             33477788888888887

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.7e-18  Score=184.67  Aligned_cols=263  Identities=22%  Similarity=0.253  Sum_probs=123.9

Q ss_pred             EEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCC----CCCcccCCccccceecccCccCCC--C---CCcccccCCC
Q 048006           91 HLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAG----PIPPQLGNLSRLQHLDLGSNYLFS--T---GNLDWLSHLS  161 (833)
Q Consensus        91 ~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~~~~--~---~~~~~l~~l~  161 (833)
                      .|+|.++.+++...+..+..+.+|++|+++++.++.    .++..+...++|++|+++++.+..  .   .....+.+++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            355555666544455555556666666666666543    133444455556666666555421  0   0011233444


Q ss_pred             CCcEEecCCCCCCCCchhHHhhcCC---CCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCccccc-
Q 048006          162 YLRYLNLDESNLANSSDWFQVIGKL---HSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNI-  237 (833)
Q Consensus       162 ~L~~L~Ls~n~~~~~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l-  237 (833)
                      +|++|++++|.+...  .+..+..+   ++|++|++++|.+.+....                       .+...+... 
T Consensus        82 ~L~~L~l~~~~~~~~--~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~-----------------------~l~~~l~~~~  136 (319)
T cd00116          82 GLQELDLSDNALGPD--GCGVLESLLRSSSLQELKLNNNGLGDRGLR-----------------------LLAKGLKDLP  136 (319)
T ss_pred             ceeEEEccCCCCChh--HHHHHHHHhccCcccEEEeeCCccchHHHH-----------------------HHHHHHHhCC
Confidence            555555555544421  12222222   2355555555544321000                       011112222 


Q ss_pred             ccCCcEEEccCcccccc----ccccccCCCCCcEEECcCCccccc----ccccccCCCCCcEEEccCCCCCchhhHHHhh
Q 048006          238 SSIFISIDLGFNQLQGS----IPESFQHMVYLEHLRLSFNELEGG----IPKFFGNMCSLITLNLSNNKLSGQLSEIIQN  309 (833)
Q Consensus       238 ~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~  309 (833)
                      ++ |+.|++++|.+++.    ++..+..++.|++|++++|.+++.    ++..+..+++|++|++++|.+++.....+..
T Consensus       137 ~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  215 (319)
T cd00116         137 PA-LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE  215 (319)
T ss_pred             CC-ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence            22 44555555554421    223444555666666666666531    2223344456666666666665433322221


Q ss_pred             cCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCcc-----CCccccEEEccCccCCC----C
Q 048006          310 LSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWV-----PPFQLIIISLSSCKIGP----H  380 (833)
Q Consensus       310 l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~L~~~~l~~----~  380 (833)
                                                .+..+++|++|++++|++.......+.     ....|+.|++++|.++.    .
T Consensus       216 --------------------------~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~  269 (319)
T cd00116         216 --------------------------TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD  269 (319)
T ss_pred             --------------------------HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHH
Confidence                                      234455666666666655432111111     12455555555555541    2


Q ss_pred             CChhhcccccccEEeecCCcccccc
Q 048006          381 FPKWLQTQNQIELLDISNTGISDTI  405 (833)
Q Consensus       381 ~~~~l~~l~~L~~L~Ls~n~i~~~~  405 (833)
                      +...+..+++|+++++++|.++...
T Consensus       270 l~~~~~~~~~L~~l~l~~N~l~~~~  294 (319)
T cd00116         270 LAEVLAEKESLLELDLRGNKFGEEG  294 (319)
T ss_pred             HHHHHhcCCCccEEECCCCCCcHHH
Confidence            3334455567777777777776543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.3e-18  Score=185.54  Aligned_cols=84  Identities=25%  Similarity=0.319  Sum_probs=43.9

Q ss_pred             cccEEEccCCcCCCCCchhhhc-----ccCCcEEECCCcccc----ccCCcccCCCCCCCEEeCCCCcCccc----CCcc
Q 048006          663 LVKSLELSNNNLNGAVPEEIMD-----LVGLVALNLSKNHLT----GQISPKIGQLKSLDFLDLSRNQLVGG----IPSS  729 (833)
Q Consensus       663 ~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~  729 (833)
                      +|+.|++++|.+++.....+..     .+.|++|++++|.++    ..+...+..+++|+.+++++|.++..    ....
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            3456666666655432222221     256666666666665    12223344456666666666666643    2333


Q ss_pred             ccCC-CCCCEEECcCCcC
Q 048006          730 LSQL-SGLSVMDLSYNNL  746 (833)
Q Consensus       730 l~~l-~~L~~L~ls~N~l  746 (833)
                      +... +.|+.+++.+|++
T Consensus       302 ~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         302 LLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HhhcCCchhhcccCCCCC
Confidence            3333 4566666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=3e-19  Score=156.43  Aligned_cols=183  Identities=30%  Similarity=0.484  Sum_probs=130.8

Q ss_pred             cCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCC
Q 048006          530 GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQ  609 (833)
Q Consensus       530 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~  609 (833)
                      ..+..++.|.|++|+++ .+|..+..+.+|+.|++++|++. .+|..+. .+++|+.|+++-|++. ..|..|+.++.|+
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhh
Confidence            34556667777777777 45556777777777777777776 7777766 5777777777777776 6777788888888


Q ss_pred             EEeccCCcCcc-cCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCC
Q 048006          610 VLDLSLNNISG-KIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGL  688 (833)
Q Consensus       610 ~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L  688 (833)
                      .|||++|++.. .+|..|..++.|                                +.|+|+.|.+. .+|..++++++|
T Consensus       106 vldltynnl~e~~lpgnff~m~tl--------------------------------ralyl~dndfe-~lp~dvg~lt~l  152 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTL--------------------------------RALYLGDNDFE-ILPPDVGKLTNL  152 (264)
T ss_pred             hhhccccccccccCCcchhHHHHH--------------------------------HHHHhcCCCcc-cCChhhhhhcce
Confidence            88888887764 456666555555                                67788888887 778888888888


Q ss_pred             cEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCC---CCCEEECcCCcCccCCC
Q 048006          689 VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLS---GLSVMDLSYNNLSGKIP  751 (833)
Q Consensus       689 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~ls~N~l~g~ip  751 (833)
                      +.|.+..|.+- ..|..++.++.|++|++.+|+++ .+|..++++.   +=+.+.+.+|++...|.
T Consensus       153 qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  153 QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence            88888888877 67888888888888888888887 5666666543   22344555666654443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=3e-19  Score=156.44  Aligned_cols=181  Identities=29%  Similarity=0.505  Sum_probs=160.6

Q ss_pred             ccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccc
Q 048006          553 FRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM  632 (833)
Q Consensus       553 ~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  632 (833)
                      +..+...+.|.+++|+++ .+|..+. .+.+|+.|++++|++. .+|.+++.++.|+.|+++-|++. ..|..|+.++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            446677889999999998 8999988 5999999999999998 78999999999999999999997 889999988877


Q ss_pred             cccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCC-CCchhhhcccCCcEEECCCccccccCCcccCCCCC
Q 048006          633 TQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG-AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKS  711 (833)
Q Consensus       633 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  711 (833)
                                                      +.|||++|++.. ..|..|..++.|+.|+|+.|.+. .+|..++++++
T Consensus       105 --------------------------------evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~  151 (264)
T KOG0617|consen  105 --------------------------------EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN  151 (264)
T ss_pred             --------------------------------hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc
Confidence                                            889999999864 68899999999999999999998 88999999999


Q ss_pred             CCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccc---cccccCCCCCC
Q 048006          712 LDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFN---DTVYAGNPELC  771 (833)
Q Consensus       712 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~---~~~~~gn~~lc  771 (833)
                      |+.|.+..|.+. .+|..++.++.|+.|.+.+|+++-.+|+.+++.-..   ....+.|||.-
T Consensus       152 lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  152 LQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             eeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            999999999998 789999999999999999999998888776655442   22367899864

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=2.7e-14  Score=163.19  Aligned_cols=130  Identities=36%  Similarity=0.520  Sum_probs=110.3

Q ss_pred             CCCCHHHHHHHHHhhhcCcCCCCCCCCCCCCCCCCCCC----cccceEecC--CC--CcEEEEECCCCCCCCCCcceecC
Q 048006            9 IRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCC----KWTGLRCSN--KT--NHVILLDLQPIDFDSFPLRGTIS   80 (833)
Q Consensus         9 ~~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~~~~c----~w~gv~c~~--~~--~~v~~l~L~~~~~~~~~l~~~~~   80 (833)
                      ..+.++|..||+++|+++.++..  .+|.    +..||    .|.||.|..  ..  .+|+.|+|++     +.+.|.+|
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-----n~L~g~ip  435 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-----QGLRGFIP  435 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC-----CCccccCC
Confidence            35677899999999999876532  4796    33443    799999952  22  2589999998     78899999


Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCC
Q 048006           81 PALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFS  150 (833)
Q Consensus        81 ~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~  150 (833)
                      ..+.++++|+.|+|++|.+++. +|..++.+++|++|+|++|.++|.+|..++++++|++|+|++|.+..
T Consensus       436 ~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g  504 (623)
T PLN03150        436 NDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG  504 (623)
T ss_pred             HHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence            9999999999999999999985 99999999999999999999999999999999999999999988764

>PLN03150 hypothetical protein; Provisional

Probab=99.52  E-value=5.4e-14  Score=160.71  Aligned_cols=116  Identities=39%  Similarity=0.696  Sum_probs=104.6

Q ss_pred             ccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006          664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY  743 (833)
Q Consensus       664 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  743 (833)
                      ++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+.++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCccCCCCcc--ccCccccccccCCCCCCCCCCCCCC
Q 048006          744 NNLSGKIPTVT--QLQSFNDTVYAGNPELCGLPLPNKC  779 (833)
Q Consensus       744 N~l~g~ip~~~--~~~~l~~~~~~gn~~lc~~~~~~~c  779 (833)
                      |+++|.+|..-  .+..+....+.||+++|+.+....|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  537 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence            99999999752  2223445678999999987654556

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.33  E-value=4.1e-14  Score=147.34  Aligned_cols=195  Identities=27%  Similarity=0.420  Sum_probs=131.4

Q ss_pred             CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006          484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD  563 (833)
Q Consensus       484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  563 (833)
                      +..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|++|+|+.|+++ .+|..++.|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344556677777776 56666677777777777777776 66667777777777777777777 5566666655 67777


Q ss_pred             cCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006          564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK  643 (833)
Q Consensus       564 L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  643 (833)
                      +++|+++ .+|..++ ...+|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..++             
T Consensus       150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------  212 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------------  212 (722)
T ss_pred             EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence            7777776 7777766 5677777777777776 56667777777777777777776 4444443322             


Q ss_pred             cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCccc---CCCCCCCEEeCCCC
Q 048006          644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI---GQLKSLDFLDLSRN  720 (833)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N  720 (833)
                                          |..||+|+|+++ .+|-.|.+|+.|++|-|.+|.+. ..|..+   +...-.++|+..-+
T Consensus       213 --------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  213 --------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             --------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence                                367777777777 67777777777777777777776 444443   23344566666666


Q ss_pred             c
Q 048006          721 Q  721 (833)
Q Consensus       721 ~  721 (833)
                      +
T Consensus       271 q  271 (722)
T KOG0532|consen  271 Q  271 (722)
T ss_pred             c
Confidence            4

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=2.1e-13  Score=142.10  Aligned_cols=196  Identities=26%  Similarity=0.439  Sum_probs=162.9

Q ss_pred             CCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccce
Q 048006          507 TFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIV  586 (833)
Q Consensus       507 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~  586 (833)
                      .+.--...|++.|++. ++|..+..+..|+.+.|..|.+. .+|..+.++..|++|||+.|+++ .+|..++ .+ -|+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-ccee
Confidence            3445567899999998 78888888999999999999998 78888999999999999999998 8898887 34 5999


Q ss_pred             EEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccE
Q 048006          587 LSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKS  666 (833)
Q Consensus       587 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  666 (833)
                      |.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|                                +.
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl--------------------------------r~  193 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL--------------------------------RD  193 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH--------------------------------HH
Confidence            999999998 78888888899999999999997 667777777666                                77


Q ss_pred             EEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCcccc---CCCCCCEEECcC
Q 048006          667 LELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLS---QLSGLSVMDLSY  743 (833)
Q Consensus       667 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~ls~  743 (833)
                      |.+..|++. .+|+++..| .|..||+|.|+++ .+|-.|..|+.|++|-|.+|.+. ..|..+.   ...-.++|+..-
T Consensus       194 l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA  269 (722)
T KOG0532|consen  194 LNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQA  269 (722)
T ss_pred             HHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchh
Confidence            888888888 677778754 4888999999998 88999999999999999999998 5665543   233456777776


Q ss_pred             Cc
Q 048006          744 NN  745 (833)
Q Consensus       744 N~  745 (833)
                      ++
T Consensus       270 ~q  271 (722)
T KOG0532|consen  270 CQ  271 (722)
T ss_pred             cc
Confidence            64

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.22  E-value=1.5e-11  Score=134.88  Aligned_cols=197  Identities=37%  Similarity=0.573  Sum_probs=100.0

Q ss_pred             EEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcC-CccEEEcccCcCccccCccccCCCCCcEeccCCC
Q 048006          489 YVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQ-NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN  567 (833)
Q Consensus       489 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  567 (833)
                      .++++.|.+.... .....++.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4566666553222 22333455666666666666 3333444443 6666666666666 33344556666666666666


Q ss_pred             ccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceE
Q 048006          568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLM  647 (833)
Q Consensus       568 ~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~  647 (833)
                      ++. .+|.... ..+.|+.|++++|++. .+|........|+++.+++|++. ..+..+.++..+               
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l---------------  234 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL---------------  234 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc---------------
Confidence            665 5555443 3556666666666665 34444334444555666555422 222223333222               


Q ss_pred             EeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCC
Q 048006          648 LTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIP  727 (833)
Q Consensus       648 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  727 (833)
                                       ..+.+++|++. ..+..++.+++++.|++++|.++.. +. ++.+.+++.|++++|.++..+|
T Consensus       235 -----------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         235 -----------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             -----------------cccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence                             34445555544 2244445555555555555555522 22 4555555555555555554443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=1.9e-11  Score=134.08  Aligned_cols=198  Identities=34%  Similarity=0.481  Sum_probs=106.9

Q ss_pred             EEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCC-CCcEeccCCCccCCCCCcchhhcCCccceEEecC
Q 048006          513 ILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCS-QLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS  591 (833)
Q Consensus       513 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~  591 (833)
                      .++++.|.+...+ ..+..++.++.|++.+|.++ .++......+ +|+.|++++|++. .+|..+. .+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence            4555555553221 22333455666666666666 3333344442 6666666666665 5544444 466666666666


Q ss_pred             CcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccC
Q 048006          592 NKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN  671 (833)
Q Consensus       592 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  671 (833)
                      |++. .+|.....++.|+.|++++|++. .+|.......                                .|++|++++
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~--------------------------------~L~~l~~~~  218 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS--------------------------------ALEELDLSN  218 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhh--------------------------------hhhhhhhcC
Confidence            6666 34444445566666666666665 3333221111                                135566666


Q ss_pred             CcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCC
Q 048006          672 NNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIP  751 (833)
Q Consensus       672 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  751 (833)
                      |.+. .++..+..+..+..|.+++|++. ..+..++.+++++.|++++|+++.. +. +..+.+++.|++++|.++..+|
T Consensus       219 N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         219 NSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             Ccce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence            6433 45555566666666666666665 2245556666666666666666633 22 5566666666666666655544


Q ss_pred             C
Q 048006          752 T  752 (833)
Q Consensus       752 ~  752 (833)
                      .
T Consensus       295 ~  295 (394)
T COG4886         295 L  295 (394)
T ss_pred             h
Confidence            3

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=2.4e-12  Score=126.95  Aligned_cols=258  Identities=23%  Similarity=0.267  Sum_probs=142.3

Q ss_pred             ccCCCCCcEEECcCCccccc----ccccccCCCCCcEEEccCCC---CCchhhHHHhhcCCccccCCccEEEcccccccc
Q 048006          259 FQHMVYLEHLRLSFNELEGG----IPKFFGNMCSLITLNLSNNK---LSGQLSEIIQNLSSGCLENSLKSLYLENSLTGV  331 (833)
Q Consensus       259 ~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~---l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~  331 (833)
                      +..+..+++++|++|.+...    +...+.+.++|+..++++--   +...+|+.+..+.                    
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~--------------------   85 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLS--------------------   85 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHH--------------------
Confidence            34556677777777776532    23345566677777776542   2223444443332                    


Q ss_pred             cChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHh
Q 048006          332 ISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWN  411 (833)
Q Consensus       332 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~  411 (833)
                         ..+..+++|++++||+|.+....+..                    +...+.++..|++|.|.+|.+.......+..
T Consensus        86 ---~aL~~~~~L~~ldLSDNA~G~~g~~~--------------------l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~  142 (382)
T KOG1909|consen   86 ---KALLGCPKLQKLDLSDNAFGPKGIRG--------------------LEELLSSCTDLEELYLNNCGLGPEAGGRLGR  142 (382)
T ss_pred             ---HHHhcCCceeEeeccccccCccchHH--------------------HHHHHHhccCHHHHhhhcCCCChhHHHHHHH
Confidence               14566677777877777665433222                    2233456677777777777765333333222


Q ss_pred             hcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEE
Q 048006          412 LSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVD  491 (833)
Q Consensus       412 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  491 (833)
                      .   |..|.  .++..        ..                                              -+.|+.+.
T Consensus       143 a---l~~l~--~~kk~--------~~----------------------------------------------~~~Lrv~i  163 (382)
T KOG1909|consen  143 A---LFELA--VNKKA--------AS----------------------------------------------KPKLRVFI  163 (382)
T ss_pred             H---HHHHH--HHhcc--------CC----------------------------------------------CcceEEEE
Confidence            1   11111  11111        00                                              14455555


Q ss_pred             cCCCcCcCC----CCCcccCCCCCcEEEccCCccccc----CCCCccCcCCccEEEcccCcCcc----ccCccccCCCCC
Q 048006          492 LSSNLLSGK----LPDCWWTFDSLVILNLENNSFSGR----IPDSMGFLQNIQTLSLHNNRLTG----ELSSSFRNCSQL  559 (833)
Q Consensus       492 ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L  559 (833)
                      ...|++...    +...|...+.|+.+.++.|.|...    +...|..+++|++|||.+|-++.    .+...+..+++|
T Consensus       164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence            555554322    222345556666666666655421    22345566777777777776662    223445666777


Q ss_pred             cEeccCCCccCCCCCc----chhhcCCccceEEecCCccccc----ccccccCCCCCCEEeccCCcC
Q 048006          560 RLLDLGKNALYGEIPT----WMGESLSNLIVLSLKSNKFHGK----IPFQLCQLAFLQVLDLSLNNI  618 (833)
Q Consensus       560 ~~L~L~~n~l~~~~p~----~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l  618 (833)
                      +.|++++|.+...-..    .+....++|++|.+.+|.++..    +...+...+.|..|+|++|++
T Consensus       244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            7777777777633222    2223467788888888877622    233455578888888888888

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=1.6e-11  Score=117.98  Aligned_cols=133  Identities=27%  Similarity=0.254  Sum_probs=96.9

Q ss_pred             CCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccc
Q 048006          581 LSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRST  660 (833)
Q Consensus       581 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  660 (833)
                      ...|+++||++|.|+ .+.++..-.+.++.|++|+|.|...-  .+..                                
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~--------------------------------  327 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAE--------------------------------  327 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhh--------------------------------
Confidence            456788888888877 56667777788888888888876211  1222                                


Q ss_pred             cCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccC-CccccCCCCCCEE
Q 048006          661 LGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGI-PSSLSQLSGLSVM  739 (833)
Q Consensus       661 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L  739 (833)
                      +++|+.||||+|.++ .+...-..+-+.+.|.|+.|.|...  ..++.+-+|..||+++|+|.... -..++++|.|+.+
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            344588888888887 4555556677888888888888644  56777888899999999887432 2567888999999


Q ss_pred             ECcCCcCccCCC
Q 048006          740 DLSYNNLSGKIP  751 (833)
Q Consensus       740 ~ls~N~l~g~ip  751 (833)
                      .+.+|++++.+-
T Consensus       405 ~L~~NPl~~~vd  416 (490)
T KOG1259|consen  405 RLTGNPLAGSVD  416 (490)
T ss_pred             hhcCCCccccch
Confidence            999999987554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.2e-11  Score=125.32  Aligned_cols=85  Identities=27%  Similarity=0.350  Sum_probs=46.0

Q ss_pred             ccEEEccCCcCCCCCc-hhhhcccCCcEEECCCccccccC-Ccc-----cCCCCCCCEEeCCCCcCccc-CCccccCCCC
Q 048006          664 VKSLELSNNNLNGAVP-EEIMDLVGLVALNLSKNHLTGQI-SPK-----IGQLKSLDFLDLSRNQLVGG-IPSSLSQLSG  735 (833)
Q Consensus       664 L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~-p~~-----l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~  735 (833)
                      |++|||++|++..... ...+.++.|+.|+++.+.+...- |+.     ...+++|++|+++.|++..- --..+..+++
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n  327 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN  327 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence            3566666666552211 23455666666666666665321 222     24456777777777777421 0122344456


Q ss_pred             CCEEECcCCcCcc
Q 048006          736 LSVMDLSYNNLSG  748 (833)
Q Consensus       736 L~~L~ls~N~l~g  748 (833)
                      |+.|.+..|.++.
T Consensus       328 lk~l~~~~n~ln~  340 (505)
T KOG3207|consen  328 LKHLRITLNYLNK  340 (505)
T ss_pred             hhhhhcccccccc
Confidence            6666666676654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=3.4e-11  Score=112.15  Aligned_cols=111  Identities=31%  Similarity=0.374  Sum_probs=30.9

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCcccccc-CCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccc-cCC
Q 048006           83 LLKLHDLRHLNLSFNDFSGSPIPEFIG-SLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWL-SHL  160 (833)
Q Consensus        83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l  160 (833)
                      +.+...+++|+|++|.|+.+   +.++ .+.+|+.||||+|.|.. ++ .+..+++|++|++++|.+..+  ...+ ..+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i--~~~l~~~l   87 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI--SEGLDKNL   87 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S---CHHHHHH-
T ss_pred             cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc--ccchHHhC
Confidence            33444566677777766632   3344 45666777777776663 32 355666666666666666432  1122 346


Q ss_pred             CCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCC
Q 048006          161 SYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPP  201 (833)
Q Consensus       161 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  201 (833)
                      ++|++|++++|++.+...+ ..++.+++|++|+|.+|.+..
T Consensus        88 p~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGG
T ss_pred             CcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccc
Confidence            6666666666666555433 345556666666666665543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=3.5e-11  Score=122.14  Aligned_cols=164  Identities=25%  Similarity=0.217  Sum_probs=79.6

Q ss_pred             CccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccC
Q 048006          134 NLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSS  213 (833)
Q Consensus       134 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  213 (833)
                      ++.+|+...|.++.....+.-.....|++++.||||+|-+.....+......+++|+.|+|+.|.+......  ..-..+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s--~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS--NTTLLL  196 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc--cchhhh
Confidence            445555555555444321111234455555555555555555444444555666666666666665443332  111123


Q ss_pred             CCCCEEEccCCcCCCCCCC-cccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccc-cccccCCCCCcE
Q 048006          214 TSLETLVLSDNNLTSSIYP-WLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGI-PKFFGNMCSLIT  291 (833)
Q Consensus       214 ~~L~~L~Ls~n~l~~~~~~-~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~  291 (833)
                      +.|+.|.|+.|.++...-. .+..+++ ++.|+|..|............+..|++|||++|.+-... -...+.++.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPs-l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPS-LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCc-HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            5666666666665521111 1122333 555666665422222223344555666666666554211 123455666666


Q ss_pred             EEccCCCCC
Q 048006          292 LNLSNNKLS  300 (833)
Q Consensus       292 L~Ls~n~l~  300 (833)
                      |+++.+.+.
T Consensus       276 Lnls~tgi~  284 (505)
T KOG3207|consen  276 LNLSSTGIA  284 (505)
T ss_pred             hhccccCcc
Confidence            666666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=4.5e-11  Score=118.16  Aligned_cols=234  Identities=25%  Similarity=0.263  Sum_probs=146.9

Q ss_pred             CcEEEEECCCCCCCCCCcce----ecCccccCCCCCCEEeCCCCCCCCC---Cccc-------cccCCCCCCEEEccCCC
Q 048006           58 NHVILLDLQPIDFDSFPLRG----TISPALLKLHDLRHLNLSFNDFSGS---PIPE-------FIGSLSKLRYLDLFGTV  123 (833)
Q Consensus        58 ~~v~~l~L~~~~~~~~~l~~----~~~~~l~~l~~L~~L~Ls~n~~~~~---~~p~-------~~~~l~~L~~L~Ls~n~  123 (833)
                      ..++.++|++     +.+..    .+.+.+.+.+.|+..++|+- ++|.   .+|+       .+-.+++|++||||+|.
T Consensus        30 ~s~~~l~lsg-----nt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   30 DSLTKLDLSG-----NTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             CceEEEeccC-----CchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            4688899998     45432    34566788888999888854 3332   2343       34556789999999998


Q ss_pred             CCCCCCcc----cCCccccceecccCccCCCCCCc------------ccccCCCCCcEEecCCCCCCCC--chhHHhhcC
Q 048006          124 FAGPIPPQ----LGNLSRLQHLDLGSNYLFSTGNL------------DWLSHLSYLRYLNLDESNLANS--SDWFQVIGK  185 (833)
Q Consensus       124 l~~~~p~~----~~~l~~L~~L~Ls~n~~~~~~~~------------~~l~~l~~L~~L~Ls~n~~~~~--~~~~~~l~~  185 (833)
                      +.-.-+..    +.+++.|++|.|.+|.+.....-            ...+.-+.|++++.++|++.+.  ..+...+..
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~  183 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS  183 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence            86544433    45678899999999876321110            1244567889999998888654  345667778


Q ss_pred             CCCCCEEEccCCCCCCCCC--ccccccccCCCCCEEEccCCcCCCC----CCCcccccccCCcEEEccCccccccccccc
Q 048006          186 LHSLKTLSLHSCYLPPVIP--LSLNHLNSSTSLETLVLSDNNLTSS----IYPWLPNISSIFISIDLGFNQLQGSIPESF  259 (833)
Q Consensus       186 l~~L~~L~Ls~n~l~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~  259 (833)
                      .+.|+.+.+..|.+...--  .. ..+..+++|+.|||.+|.++..    +...++.++. |+.|++++|.+...-..+|
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~-eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~-L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALA-EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH-LRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             ccccceEEEecccccCchhHHHH-HHHHhCCcceeeecccchhhhHHHHHHHHHhcccch-heeecccccccccccHHHH
Confidence            8888888888887643211  11 1122348888888888887632    2233444454 6777777776654333222


Q ss_pred             -----cCCCCCcEEECcCCcccc----cccccccCCCCCcEEEccCCCC
Q 048006          260 -----QHMVYLEHLRLSFNELEG----GIPKFFGNMCSLITLNLSNNKL  299 (833)
Q Consensus       260 -----~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l  299 (833)
                           ...+.|++|.+.+|.++.    .+.......+.|+.|+|++|.+
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                 135666777777776653    1122234466666666666666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=2.2e-10  Score=106.70  Aligned_cols=126  Identities=33%  Similarity=0.357  Sum_probs=59.7

Q ss_pred             cEEEEECCCCCCCCCCcceecCcccc-CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccc-CCcc
Q 048006           59 HVILLDLQPIDFDSFPLRGTISPALL-KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQL-GNLS  136 (833)
Q Consensus        59 ~v~~l~L~~~~~~~~~l~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~  136 (833)
                      +.+.|+|.+     +.++. + ..++ .+.+|+.|+|++|.|+..   +.+..+++|++|++++|.|+. +++.+ ..++
T Consensus        20 ~~~~L~L~~-----n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp   88 (175)
T PF14580_consen   20 KLRELNLRG-----NQIST-I-ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-T
T ss_pred             ccccccccc-----ccccc-c-cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence            567899988     44432 2 2354 578999999999999954   358889999999999999984 55445 4689


Q ss_pred             ccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCch-hHHhhcCCCCCCEEEcc
Q 048006          137 RLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSD-WFQVIGKLHSLKTLSLH  195 (833)
Q Consensus       137 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~l~~L~~L~Ls  195 (833)
                      +|++|++++|.|........++.+++|++|++.+|.++.... -...+..+|+|+.||-.
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            999999999999888888899999999999999999976533 23457788999988754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=1.6e-10  Score=111.27  Aligned_cols=134  Identities=31%  Similarity=0.369  Sum_probs=103.1

Q ss_pred             ccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccc
Q 048006          553 FRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM  632 (833)
Q Consensus       553 ~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  632 (833)
                      ......|+.+|+++|.|+ .+.+.+- -.|.++.|++++|.+...  ..+..+++|+.||||+|.++. +..+       
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gw-------  347 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGW-------  347 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhh-------
Confidence            334567889999999988 7777765 578999999999998733  247889999999999998862 2111       


Q ss_pred             cccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccC-CcccCCCCC
Q 048006          633 TQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQI-SPKIGQLKS  711 (833)
Q Consensus       633 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~  711 (833)
                                               ...+.+.+.|.|++|.+.  .-..++.+-+|..||+++|+|.... -..++++|.
T Consensus       348 -------------------------h~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC  400 (490)
T KOG1259|consen  348 -------------------------HLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC  400 (490)
T ss_pred             -------------------------HhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccH
Confidence                                     123445589999999985  3345788899999999999997432 246899999


Q ss_pred             CCEEeCCCCcCccc
Q 048006          712 LDFLDLSRNQLVGG  725 (833)
Q Consensus       712 L~~L~Ls~N~l~~~  725 (833)
                      |+.+.|.+|.+.+.
T Consensus       401 LE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  401 LETLRLTGNPLAGS  414 (490)
T ss_pred             HHHHhhcCCCcccc
Confidence            99999999999854

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.87  E-value=2.6e-10  Score=125.02  Aligned_cols=246  Identities=25%  Similarity=0.241  Sum_probs=134.6

Q ss_pred             CCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEE
Q 048006          460 SNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLS  539 (833)
Q Consensus       460 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  539 (833)
                      ..++.+++..|.+.........  +.+|+.+++.+|+|.... ..+..+++|++|++++|.|+...  .+..++.|+.|+
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~--~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSK--LKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhhhhhccccc--ccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhhe
Confidence            3444455555555432221111  355566666666655332 12445555666666666655432  234445556666


Q ss_pred             cccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc
Q 048006          540 LHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS  619 (833)
Q Consensus       540 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  619 (833)
                      +++|.++..  ..+..++.|+.+++++|.+. .++......+.+++.+++.+|.+...  ..+..+..+..+++..|.++
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence            666655532  23444555556666666555 33321011355555555555555421  12223333344455555544


Q ss_pred             ccCCccccccccccccCCCCcccccceEEeeccCcchhccccC--cccEEEccCCcCCCCCchhhhcccCCcEEECCCcc
Q 048006          620 GKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLG--LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNH  697 (833)
Q Consensus       620 ~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  697 (833)
                      ..-+     +                             ..+.  .|+.+++++|++. .++..+..+..+..|++++|+
T Consensus       222 ~~~~-----l-----------------------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~  266 (414)
T KOG0531|consen  222 KLEG-----L-----------------------------NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNR  266 (414)
T ss_pred             eccC-----c-----------------------------ccchhHHHHHHhcccCccc-cccccccccccccccchhhcc
Confidence            2111     0                             0011  2588889999887 444667778888899999998


Q ss_pred             ccccCCcccCCCCCCCEEeCCCCcCccc---CCcc-ccCCCCCCEEECcCCcCccCCCC
Q 048006          698 LTGQISPKIGQLKSLDFLDLSRNQLVGG---IPSS-LSQLSGLSVMDLSYNNLSGKIPT  752 (833)
Q Consensus       698 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~g~ip~  752 (833)
                      +...  ..+...+.+..+.++.|.+...   .... ....+.+..+++.+|+.....+.
T Consensus       267 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  267 ISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL  323 (414)
T ss_pred             cccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence            8754  4456667788888888887632   1221 45567888888999988876653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=3.8e-10  Score=123.77  Aligned_cols=127  Identities=28%  Similarity=0.318  Sum_probs=63.1

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      ..++.+.+..|.+.. +-..+..+.+|+.|++.+|.|.+. ...+..+++|++|++++|.|+.+.  .+..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence            445555555555553 122344455555566666655532 222444555666666666555332  2444455555666


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCccccccc-ccccCCCCCCEEeccCCcCc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP-FQLCQLAFLQVLDLSLNNIS  619 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~  619 (833)
                      ++|.|. .++..-  .+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus       148 ~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  148 SGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            666554 333221  25555555666655553322 1 344555555555555554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.86  E-value=2.9e-09  Score=74.11  Aligned_cols=41  Identities=54%  Similarity=1.070  Sum_probs=30.7

Q ss_pred             CHHHHHHHHHhhhcCc-CCCCCCCCCCCCCC-CCCCCcccceEec
Q 048006           12 IDEEREALLTFKASLV-DESGVLSSWGPEDE-KRDCCKWTGLRCS   54 (833)
Q Consensus        12 ~~~~~~~ll~~k~~~~-~~~~~~~~w~~~~~-~~~~c~w~gv~c~   54 (833)
                      +++|++||++||+++. +|.+.+.+|+.  . ..+||+|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence            3689999999999998 57789999984  2 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=2.1e-09  Score=82.15  Aligned_cols=60  Identities=42%  Similarity=0.532  Sum_probs=38.4

Q ss_pred             CCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcC
Q 048006          687 GLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL  746 (833)
Q Consensus       687 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  746 (833)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666655555666666666666666666666666666666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=3.8e-09  Score=80.74  Aligned_cols=61  Identities=39%  Similarity=0.544  Sum_probs=56.7

Q ss_pred             CcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcC
Q 048006          662 GLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL  722 (833)
Q Consensus       662 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  722 (833)
                      |+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4579999999999977778999999999999999999998889999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=5.7e-09  Score=122.01  Aligned_cols=109  Identities=36%  Similarity=0.430  Sum_probs=61.6

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCC
Q 048006           83 LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY  162 (833)
Q Consensus        83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  162 (833)
                      |..++.|++|||++|.--+ .+|+.++.|-+||||+|+++.+. .+|..+++|++|.+||+..+.... ..+.....+.+
T Consensus       567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~  643 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQS  643 (889)
T ss_pred             HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccc-cccchhhhccc
Confidence            5557777777777653322 47777777777777777777766 567777777777777776655332 11233444666


Q ss_pred             CcEEecCCCCCCCCchhHHhhcCCCCCCEEEc
Q 048006          163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSL  194 (833)
Q Consensus       163 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L  194 (833)
                      ||+|.+...........-..+.++.+|+.+..
T Consensus       644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  644 LRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             ccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            66666655542222122233344444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.71  E-value=6.3e-09  Score=121.67  Aligned_cols=107  Identities=33%  Similarity=0.364  Sum_probs=83.6

Q ss_pred             CCCCEEeCCCCC--CCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCc
Q 048006           87 HDLRHLNLSFND--FSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLR  164 (833)
Q Consensus        87 ~~L~~L~Ls~n~--~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  164 (833)
                      +.|++|-+.+|.  +... .+++|..++.|++||||+|.--+.+|..++.|-+||+|++++..+.  ..|..+++++.|.
T Consensus       545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLI  621 (889)
T ss_pred             CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhh
Confidence            368888888885  4432 4456888999999999998877789999999999999999999886  5677888888999


Q ss_pred             EEecCCCCCCCCchhHHhhcCCCCCCEEEccCCC
Q 048006          165 YLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCY  198 (833)
Q Consensus       165 ~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~  198 (833)
                      +|++..+.....  ++..+..+++|++|.+....
T Consensus       622 ~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  622 YLNLEVTGRLES--IPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eecccccccccc--ccchhhhcccccEEEeeccc
Confidence            998887765443  24455668888888886654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.53  E-value=2.1e-09  Score=115.73  Aligned_cols=180  Identities=32%  Similarity=0.292  Sum_probs=99.1

Q ss_pred             CCCccCcCCccEEEcccCcCccccCccccCC-CCCcEeccCCCccC----------CCCCcchhhcCCccceEEecCCcc
Q 048006          526 PDSMGFLQNIQTLSLHNNRLTGELSSSFRNC-SQLRLLDLGKNALY----------GEIPTWMGESLSNLIVLSLKSNKF  594 (833)
Q Consensus       526 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~p~~~~~~l~~L~~L~L~~N~l  594 (833)
                      |-.+..+.+|++|.+.++.+..  ..++..+ ..|+.|-- .|.+.          |.+.....  ...|.+.+.+.|.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL  176 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence            4455667788888888887763  1112111 12333321 22211          12211111  23566667777776


Q ss_pred             cccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcC
Q 048006          595 HGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNL  674 (833)
Q Consensus       595 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  674 (833)
                      . ....++.-++.|+.|||++|++...-  .+                                ..++.|+.|||++|.+
T Consensus       177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~L--------------------------------r~l~~LkhLDlsyN~L  221 (1096)
T KOG1859|consen  177 V-LMDESLQLLPALESLNLSHNKFTKVD--NL--------------------------------RRLPKLKHLDLSYNCL  221 (1096)
T ss_pred             H-hHHHHHHHHHHhhhhccchhhhhhhH--HH--------------------------------Hhcccccccccccchh
Confidence            6 44556666677777777777765221  22                                2234447777777777


Q ss_pred             CCCCch-hhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccC-CccccCCCCCCEEECcCCcCccC
Q 048006          675 NGAVPE-EIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGI-PSSLSQLSGLSVMDLSYNNLSGK  749 (833)
Q Consensus       675 ~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~  749 (833)
                      . .+|. ....+. |+.|++++|.++..  ..+.++.+|+.||+++|-|.+.- -..+..|..|+.|+|.+|++.+.
T Consensus       222 ~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  222 R-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             c-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            6 3443 222333 77777777777644  45666777777777777766431 12234455667777777777653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=9.4e-10  Score=106.16  Aligned_cols=181  Identities=24%  Similarity=0.217  Sum_probs=96.5

Q ss_pred             CCEEEccCCCCCC-CCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEE
Q 048006          114 LRYLDLFGTVFAG-PIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTL  192 (833)
Q Consensus       114 L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L  192 (833)
                      |++||||...|+. .+-.-++.|++|+.|.|.++++.. .....+++-.+|+.|+++.+.--.....--.+..|+.|++|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5555555544431 111223444555555555554432 11223445555555555554321111233345667777777


Q ss_pred             EccCCCCCCCCCccccccccCCCCCEEEccCCcCC--CCCCCcc-cccccCCcEEEccCcc-ccccccccccCCCCCcEE
Q 048006          193 SLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLT--SSIYPWL-PNISSIFISIDLGFNQ-LQGSIPESFQHMVYLEHL  268 (833)
Q Consensus       193 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~l-~~l~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L  268 (833)
                      ++++|.+....-. .....--++|+.|+|+++.-.  ....+.+ ...++ +.+|||+.|. ++...-..|.+++.|++|
T Consensus       266 NlsWc~l~~~~Vt-v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~-l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  266 NLSWCFLFTEKVT-VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN-LVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             CchHhhccchhhh-HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc-eeeeccccccccCchHHHHHHhcchheee
Confidence            7777766543211 011112266777777765321  1111122 23444 7788888765 444444567788999999


Q ss_pred             ECcCCccccccccc---ccCCCCCcEEEccCCCC
Q 048006          269 RLSFNELEGGIPKF---FGNMCSLITLNLSNNKL  299 (833)
Q Consensus       269 ~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l  299 (833)
                      .++.|..  ++|..   +...|.|.+|++.++--
T Consensus       344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             ehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence            9998864  45553   56788999999988743

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.49  E-value=1.7e-09  Score=116.31  Aligned_cols=195  Identities=29%  Similarity=0.319  Sum_probs=128.5

Q ss_pred             CcccEEEcCCCcCcCCC-CCcccCCCCCcEEEccCCcccccCCCCccCc-CCccEEEcccCcCc----------cccCcc
Q 048006          485 SKLTYVDLSSNLLSGKL-PDCWWTFDSLVILNLENNSFSGRIPDSMGFL-QNIQTLSLHNNRLT----------GELSSS  552 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~~~~  552 (833)
                      ++++.+.+-.-.-.+.. |-.+..+.+|+.|.+.++.+.. . ..+..+ ..|++|.-. |.+.          |.+..+
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc
Confidence            45555554433222222 4456678899999999998873 1 122221 245555333 2222          111111


Q ss_pred             ccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcc-cccccc
Q 048006          553 FRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKC-FNNFTA  631 (833)
Q Consensus       553 ~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~  631 (833)
                      + -...|...+.+.|.+. .+...+. -++.|+.|+|++|+++...  .+..++.|+.|||++|.+. .+|.. ...   
T Consensus       161 ~-~Wn~L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g---  231 (1096)
T KOG1859|consen  161 P-VWNKLATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVG---  231 (1096)
T ss_pred             h-hhhhHhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhh---
Confidence            1 1235788899999987 6666655 5889999999999998543  7888999999999999987 33321 111   


Q ss_pred             ccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCC-cccCCCC
Q 048006          632 MTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQIS-PKIGQLK  710 (833)
Q Consensus       632 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~  710 (833)
                                                   + .|+.|.+++|.++.  -..+.++.+|+.||+++|-|.+.-. .-+..+.
T Consensus       232 -----------------------------c-~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs  279 (1096)
T KOG1859|consen  232 -----------------------------C-KLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS  279 (1096)
T ss_pred             -----------------------------h-hheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHH
Confidence                                         1 25889999999873  3457889999999999998875422 2245567


Q ss_pred             CCCEEeCCCCcCc
Q 048006          711 SLDFLDLSRNQLV  723 (833)
Q Consensus       711 ~L~~L~Ls~N~l~  723 (833)
                      .|+.|+|.+|.+-
T Consensus       280 ~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  280 SLIVLWLEGNPLC  292 (1096)
T ss_pred             HHHHHhhcCCccc
Confidence            8999999999986

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.4e-08  Score=98.24  Aligned_cols=225  Identities=25%  Similarity=0.246  Sum_probs=140.8

Q ss_pred             CEEeCCCCCCCCCCccccccCCC--CCCEEEccCCCCCCC-CCcccCCc-cccceecccCccCCCCCCcccccCCCCCcE
Q 048006           90 RHLNLSFNDFSGSPIPEFIGSLS--KLRYLDLFGTVFAGP-IPPQLGNL-SRLQHLDLGSNYLFSTGNLDWLSHLSYLRY  165 (833)
Q Consensus        90 ~~L~Ls~n~~~~~~~p~~~~~l~--~L~~L~Ls~n~l~~~-~p~~~~~l-~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  165 (833)
                      +.||+.+-.|.    |..++.+.  ...++.+....+... +.+.+.-. +.||+||||.-.|+.......++.+.+|+.
T Consensus       139 ~~lDl~~r~i~----p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~  214 (419)
T KOG2120|consen  139 QTLDLTGRNIH----PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN  214 (419)
T ss_pred             eeeccCCCccC----hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence            45666665554    33344332  334444444333322 22222212 469999999887764333345788999999


Q ss_pred             EecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCC-CCcccccccCCcEE
Q 048006          166 LNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSI-YPWLPNISSIFISI  244 (833)
Q Consensus       166 L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~~L~~L  244 (833)
                      |.+.++++.+  .+...+++-.+|+.|+++.|.--...... -++..++.|..|+|++|.+.... ...+......++.|
T Consensus       215 lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~-ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L  291 (419)
T KOG2120|consen  215 LSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQ-LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL  291 (419)
T ss_pred             ccccccccCc--HHHHHHhccccceeeccccccccchhHHH-HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence            9999999988  57788899999999999987532221111 23344588999999999876432 22233444447888


Q ss_pred             EccCccc---cccccccccCCCCCcEEECcCC-cccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCcc
Q 048006          245 DLGFNQL---QGSIPESFQHMVYLEHLRLSFN-ELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK  320 (833)
Q Consensus       245 ~Ls~n~l---~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~  320 (833)
                      +++++.-   ...+..-...+++|.+|||++| .++......|..++.|++|.++.|..  .+|..+-.+.+   .++|.
T Consensus       292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s---~psl~  366 (419)
T KOG2120|consen  292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNS---KPSLV  366 (419)
T ss_pred             hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeecc---CcceE
Confidence            8887642   1122223457899999999987 44444445677889999999998863  45654443321   11888


Q ss_pred             EEEccc
Q 048006          321 SLYLEN  326 (833)
Q Consensus       321 ~L~L~~  326 (833)
                      +|++.+
T Consensus       367 yLdv~g  372 (419)
T KOG2120|consen  367 YLDVFG  372 (419)
T ss_pred             EEEecc
Confidence            888833

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=6.5e-08  Score=93.70  Aligned_cols=90  Identities=23%  Similarity=0.221  Sum_probs=61.9

Q ss_pred             cCCCCCCEEeCCCCCCCCCC-ccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCC
Q 048006           84 LKLHDLRHLNLSFNDFSGSP-IPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY  162 (833)
Q Consensus        84 ~~l~~L~~L~Ls~n~~~~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  162 (833)
                      ...++++.|||.+|.|+... +-..+.++++|++|+||.|.+...+-..=..+.+|++|-|.+..+.-......+..++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            35678899999999888641 33445788999999999998874332111345688888888877654444455667777


Q ss_pred             CcEEecCCCCC
Q 048006          163 LRYLNLDESNL  173 (833)
Q Consensus       163 L~~L~Ls~n~~  173 (833)
                      +++|++|.|.+
T Consensus       148 vtelHmS~N~~  158 (418)
T KOG2982|consen  148 VTELHMSDNSL  158 (418)
T ss_pred             hhhhhhccchh
Confidence            77777777743

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=2.4e-07  Score=89.90  Aligned_cols=93  Identities=23%  Similarity=0.292  Sum_probs=61.0

Q ss_pred             cCCccccceecccCccCCCCCCccccc-CCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCcccccc
Q 048006          132 LGNLSRLQHLDLGSNYLFSTGNLDWLS-HLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHL  210 (833)
Q Consensus       132 ~~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  210 (833)
                      +..+.-++.|-+.++.|...+....++ ..+.++++||.+|.+++-.++...+.++|.|+.|+++.|.+...|..  .-.
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~  118 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPL  118 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Ccc
Confidence            333445555666666665444444443 45778888888888888777777788888888888888888766542  111


Q ss_pred             ccCCCCCEEEccCCcCC
Q 048006          211 NSSTSLETLVLSDNNLT  227 (833)
Q Consensus       211 ~~~~~L~~L~Ls~n~l~  227 (833)
                      .. .+|+.|-|.+..+.
T Consensus       119 p~-~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen  119 PL-KNLRVLVLNGTGLS  134 (418)
T ss_pred             cc-cceEEEEEcCCCCC
Confidence            22 67777777766554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.23  E-value=5.4e-08  Score=83.22  Aligned_cols=57  Identities=37%  Similarity=0.492  Sum_probs=26.8

Q ss_pred             cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006          665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV  723 (833)
Q Consensus       665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  723 (833)
                      +.|++++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            44444444444 34444444455555555555444 33444444444444444444444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.15  E-value=1.3e-07  Score=80.93  Aligned_cols=61  Identities=21%  Similarity=0.393  Sum_probs=33.7

Q ss_pred             CCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc
Q 048006          557 SQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS  619 (833)
Q Consensus       557 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  619 (833)
                      ..|+..+|++|.+. .+|..+...++.++.|++++|.++ .+|..+..++.|+.|+++.|++.
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence            34444555555555 555555444555555666666555 45555555555555555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.00  E-value=5.6e-07  Score=86.21  Aligned_cols=47  Identities=13%  Similarity=0.350  Sum_probs=26.9

Q ss_pred             hhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccc
Q 048006          336 FFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGIS  402 (833)
Q Consensus       336 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~  402 (833)
                      ++.+||.|+..+||+|.+....+..                    +.+.+..-+.|++|.+++|++.
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~--------------------L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEE--------------------LGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchH--------------------HHHHHhcCCCceeEEeecCCCC
Confidence            4566777777777777665433221                    1123445566666666666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.99  E-value=1.9e-06  Score=82.69  Aligned_cols=36  Identities=19%  Similarity=0.392  Sum_probs=17.7

Q ss_pred             CccccceecccCccCCCCCCcc----cccCCCCCcEEecCC
Q 048006          134 NLSRLQHLDLGSNYLFSTGNLD----WLSHLSYLRYLNLDE  170 (833)
Q Consensus       134 ~l~~L~~L~Ls~n~~~~~~~~~----~l~~l~~L~~L~Ls~  170 (833)
                      .+..++.+|||+|.|.. ....    .+++-.+|+..+++.
T Consensus        28 ~~d~~~evdLSGNtigt-EA~e~l~~~ia~~~~L~vvnfsd   67 (388)
T COG5238          28 MMDELVEVDLSGNTIGT-EAMEELCNVIANVRNLRVVNFSD   67 (388)
T ss_pred             hhcceeEEeccCCcccH-HHHHHHHHHHhhhcceeEeehhh
Confidence            35566666666666532 1111    133445555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.94  E-value=4.8e-07  Score=92.15  Aligned_cols=283  Identities=20%  Similarity=0.185  Sum_probs=138.9

Q ss_pred             CCCEEeCCCCCCCCC-CccccccCCCCCCEEEccCCCCCC-CCCccc-CCccccceecccCccCCCCCCcc-cccCCCCC
Q 048006           88 DLRHLNLSFNDFSGS-PIPEFIGSLSKLRYLDLFGTVFAG-PIPPQL-GNLSRLQHLDLGSNYLFSTGNLD-WLSHLSYL  163 (833)
Q Consensus        88 ~L~~L~Ls~n~~~~~-~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~~-~~l~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L  163 (833)
                      .||.|.+.++.=.+. .+-.+-..++++++|++.++.... ..-..+ ..+++|++|+|..|......... ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            577777877753332 233445678888888888876321 111112 45788888888876432111111 34568888


Q ss_pred             cEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCc-CCCCCCCcccc-cccCC
Q 048006          164 RYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNN-LTSSIYPWLPN-ISSIF  241 (833)
Q Consensus       164 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~-l~~~L  241 (833)
                      ++|+++++.-.....+-.-..+++.++.+.+.+|.=.+.-.. ......+..+.++++.++. +++.---.+.. ... +
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l-~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~-l  296 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL-LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA-L  296 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH-HHHhccChHhhccchhhhccccchHHHHHhhhhhH-h
Confidence            888888876433334444556677777777766532111000 0111112345555554542 22211001111 112 4


Q ss_pred             cEEEccCccc-cccccccc-cCCCCCcEEECcCCc-cccccccccc-CCCCCcEEEccCCCCCchhhHHHhhcCCccccC
Q 048006          242 ISIDLGFNQL-QGSIPESF-QHMVYLEHLRLSFNE-LEGGIPKFFG-NMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN  317 (833)
Q Consensus       242 ~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~  317 (833)
                      +.|+.+++.- +...-.++ .+..+|+.|.++.++ ++..--..++ +.+.|+.+++..+.....  ..+..+.      
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d--~tL~sls------  368 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD--GTLASLS------  368 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh--hhHhhhc------
Confidence            5555544432 11111112 245556666666554 2221111222 445555555555443211  1122222      


Q ss_pred             CccEEEcccccccccChhhhcCCCCCCEEECcCCcccccc-----CCCccCCccccEEEccCccCC-CCCChhhcccccc
Q 048006          318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKL-----SHDWVPPFQLIIISLSSCKIG-PHFPKWLQTQNQI  391 (833)
Q Consensus       318 ~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~l~~L  391 (833)
                                          .+++.|+.+.++.+......     ...-.....++.+.+++|... ...-..+..+++|
T Consensus       369 --------------------~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L  428 (483)
T KOG4341|consen  369 --------------------RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL  428 (483)
T ss_pred             --------------------cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence                                45677777777766433221     111233456777777777543 3344455667777


Q ss_pred             cEEeecCCc
Q 048006          392 ELLDISNTG  400 (833)
Q Consensus       392 ~~L~Ls~n~  400 (833)
                      +.+++-++.
T Consensus       429 eri~l~~~q  437 (483)
T KOG4341|consen  429 ERIELIDCQ  437 (483)
T ss_pred             ceeeeechh
Confidence            777777764

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.92  E-value=2.3e-05  Score=82.48  Aligned_cols=76  Identities=11%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             ccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCC-cccccccccccCCCC
Q 048006          529 MGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN-KFHGKIPFQLCQLAF  607 (833)
Q Consensus       529 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~  607 (833)
                      +..+.+++.|++++|.++ .+|.   --++|+.|.+++|.-...+|..+   .++|++|++++| .+. .+|      .+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cc
Confidence            444678889999999877 3452   22468899998865444677643   357888999888 443 344      34


Q ss_pred             CCEEeccCCcC
Q 048006          608 LQVLDLSLNNI  618 (833)
Q Consensus       608 L~~L~Ls~N~l  618 (833)
                      |+.|+++.+..
T Consensus       114 Le~L~L~~n~~  124 (426)
T PRK15386        114 VRSLEIKGSAT  124 (426)
T ss_pred             cceEEeCCCCC
Confidence            77777776554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.84  E-value=4.5e-06  Score=95.53  Aligned_cols=116  Identities=21%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             CCCCCEEEccCCCCCC-CCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCC
Q 048006          111 LSKLRYLDLFGTVFAG-PIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSL  189 (833)
Q Consensus       111 l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L  189 (833)
                      ||+|+.|.+++-.+.. .+-....++++|..||+|+..+   .....++.|++|+.|.+.+-.+.....+ ..+-++++|
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI---~nl~GIS~LknLq~L~mrnLe~e~~~~l-~~LF~L~~L  222 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI---SNLSGISRLKNLQVLSMRNLEFESYQDL-IDLFNLKKL  222 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCc---cCcHHHhccccHHHHhccCCCCCchhhH-HHHhcccCC
Confidence            4555555555544321 1112223445555555555554   2234455555555555555444443222 334455555


Q ss_pred             CEEEccCCCCCCCC--C-ccccccccCCCCCEEEccCCcCCCCC
Q 048006          190 KTLSLHSCYLPPVI--P-LSLNHLNSSTSLETLVLSDNNLTSSI  230 (833)
Q Consensus       190 ~~L~Ls~n~l~~~~--~-~~~~~~~~~~~L~~L~Ls~n~l~~~~  230 (833)
                      +.||+|........  . ..++....+++|+.||.|++.+...+
T Consensus       223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            55555554432221  0 00112222477777777777766544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.83  E-value=7.1e-06  Score=79.19  Aligned_cols=115  Identities=23%  Similarity=0.236  Sum_probs=78.8

Q ss_pred             eecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCC--CCCCCCCcccCCccccceecccCccCCCCCCc
Q 048006           77 GTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGT--VFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNL  154 (833)
Q Consensus        77 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~  154 (833)
                      |.+..-.-.+..|+.|++.+..++..   ..+-.|++|++|.+|.|  ++++.++.-...+++|++|++++|.+......
T Consensus        33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl  109 (260)
T KOG2739|consen   33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL  109 (260)
T ss_pred             CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence            33444455566677777777777643   34567889999999999  67766766667779999999999988765666


Q ss_pred             ccccCCCCCcEEecCCCCCCCCchhH-HhhcCCCCCCEEEc
Q 048006          155 DWLSHLSYLRYLNLDESNLANSSDWF-QVIGKLHSLKTLSL  194 (833)
Q Consensus       155 ~~l~~l~~L~~L~Ls~n~~~~~~~~~-~~l~~l~~L~~L~L  194 (833)
                      ..+..+.+|..|++++|..+....-- ..+.-+++|++|+-
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            67777888888888887766542211 22344556665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.79  E-value=1.3e-05  Score=55.84  Aligned_cols=35  Identities=37%  Similarity=0.660  Sum_probs=12.7

Q ss_pred             CcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006          688 LVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV  723 (833)
Q Consensus       688 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  723 (833)
                      |++|++++|+|+ .+|+.++++++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            333444444443 22223334444444444444433

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.74  E-value=5.1e-05  Score=70.13  Aligned_cols=106  Identities=26%  Similarity=0.296  Sum_probs=63.5

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEe
Q 048006           88 DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLN  167 (833)
Q Consensus        88 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~  167 (833)
                      ....+||++|.+...   +.|..+++|.+|.|++|+|+..-|.--.-+++|+.|.|.+|++...+....+..+++|++|.
T Consensus        43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            345677777777632   44666777777777777777555543344566777777777776666666666666777776


Q ss_pred             cCCCCCCCCchhH-HhhcCCCCCCEEEccC
Q 048006          168 LDESNLANSSDWF-QVIGKLHSLKTLSLHS  196 (833)
Q Consensus       168 Ls~n~~~~~~~~~-~~l~~l~~L~~L~Ls~  196 (833)
                      +-+|..+.....- ..+..+++|+.||...
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            6666665431110 1234444555554443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.74  E-value=3.2e-05  Score=53.84  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=21.2

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCC
Q 048006           88 DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFA  125 (833)
Q Consensus        88 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~  125 (833)
                      +|++|++++|+|+  .+|..+++|++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCC
Confidence            5666666666666  35555666666666666666655

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.71  E-value=3e-05  Score=71.58  Aligned_cols=130  Identities=23%  Similarity=0.221  Sum_probs=89.5

Q ss_pred             CCEEeCCCCCCCCCCcccccc-CCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEe
Q 048006           89 LRHLNLSFNDFSGSPIPEFIG-SLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLN  167 (833)
Q Consensus        89 L~~L~Ls~n~~~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~  167 (833)
                      =+.++|.+.++..+   ..++ -+.+...+||++|.+.. + ..|..+++|.+|.|++|+|+. ..+..-..+++|+.|.
T Consensus        21 e~e~~LR~lkip~i---enlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~   94 (233)
T KOG1644|consen   21 ERELDLRGLKIPVI---ENLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLI   94 (233)
T ss_pred             ccccccccccccch---hhccccccccceecccccchhh-c-ccCCCccccceEEecCCccee-eccchhhhccccceEE
Confidence            45667776665432   1122 24567789999998763 3 347788899999999999875 3333445577899999


Q ss_pred             cCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCc
Q 048006          168 LDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNN  225 (833)
Q Consensus       168 Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~  225 (833)
                      |.+|.+....++ ..+..|++|++|.+-+|.....---..-+...+++|+.||..+-.
T Consensus        95 LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   95 LTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            999988776444 457788999999998887765433222344556889999887654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.52  E-value=5.5e-05  Score=86.79  Aligned_cols=125  Identities=15%  Similarity=0.141  Sum_probs=61.7

Q ss_pred             hHHhhcC-CCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccc-ccc
Q 048006          179 WFQVIGK-LHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQG-SIP  256 (833)
Q Consensus       179 ~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~-~~p  256 (833)
                      |+..++. +|+|+.|.+++-.+....  .......+++|..||+|+..++..  ..+..+.+ |+.|.+.+=.+.. ..-
T Consensus       139 W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn-Lq~L~mrnLe~e~~~~l  213 (699)
T KOG3665|consen  139 WPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL--SGISRLKN-LQVLSMRNLEFESYQDL  213 (699)
T ss_pred             HHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc--HHHhcccc-HHHHhccCCCCCchhhH
Confidence            4444433 345555544443332221  112223335555555555544432  33344444 4444444333332 111


Q ss_pred             ccccCCCCCcEEECcCCcccccc------cccccCCCCCcEEEccCCCCCchhhHHHh
Q 048006          257 ESFQHMVYLEHLRLSFNELEGGI------PKFFGNMCSLITLNLSNNKLSGQLSEIIQ  308 (833)
Q Consensus       257 ~~~~~l~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~  308 (833)
                      ..+.++++|+.||+|..+.....      -+.-..+|+|+.||.|+..+.+..-+.+-
T Consensus       214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL  271 (699)
T ss_pred             HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence            34567788888888876544211      12223578888999888887766554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.42  E-value=0.0006  Score=72.00  Aligned_cols=53  Identities=15%  Similarity=0.206  Sum_probs=24.5

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccC
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNN  543 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  543 (833)
                      ..++.|++++|.++ .+|.   -..+|+.|.++++.-...+|..+  .++|++|++++|
T Consensus        52 ~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            45556666665555 2231   11245566665533222334322  235555555555

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=1.4e-05  Score=77.24  Aligned_cols=104  Identities=27%  Similarity=0.316  Sum_probs=80.2

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCc
Q 048006           85 KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLR  164 (833)
Q Consensus        85 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  164 (833)
                      .+.+.+.|++-++.++++   ..+.+++.|++|.||-|.|+..-|  +..|++|++|+|..|.|........+.++++|+
T Consensus        17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            356778899999999876   446789999999999999985444  789999999999999987655566788899999


Q ss_pred             EEecCCCCCCCCch---hHHhhcCCCCCCEEE
Q 048006          165 YLNLDESNLANSSD---WFQVIGKLHSLKTLS  193 (833)
Q Consensus       165 ~L~Ls~n~~~~~~~---~~~~l~~l~~L~~L~  193 (833)
                      .|.|..|...+..+   =...+.-+|+|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99998887654311   113456677777775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.33  E-value=8.1e-05  Score=72.02  Aligned_cols=113  Identities=20%  Similarity=0.292  Sum_probs=75.3

Q ss_pred             ccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCcc--CCCCCCcccccCCCCCcEEecCCCCCCCCchhHH
Q 048006          104 IPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNY--LFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQ  181 (833)
Q Consensus       104 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~--~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~  181 (833)
                      +....-.+..|+.|++.+..++..  ..+-.|++|++|++|.|.  +.. +.......+++|++|++++|++..+..+ .
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~~lstl-~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIKDLSTL-R  110 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCcccccccc-c
Confidence            444455667778888777776531  346678999999999994  432 3334455669999999999998876444 3


Q ss_pred             hhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEE
Q 048006          182 VIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLV  220 (833)
Q Consensus       182 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~  220 (833)
                      .+..+.+|..|++.+|.-+......-..+..+++|++||
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            567788888888888876553221113344456666664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.23  E-value=0.0012  Score=59.30  Aligned_cols=123  Identities=18%  Similarity=0.259  Sum_probs=53.8

Q ss_pred             CcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCC
Q 048006          503 DCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLS  582 (833)
Q Consensus       503 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  582 (833)
                      .+|.++.+|+.+.+.. .+.......|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+. .++...+..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence            3455666666666653 344455555666666666666654 5545555666666677766654 332 44555554566


Q ss_pred             ccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccc
Q 048006          583 NLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM  632 (833)
Q Consensus       583 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  632 (833)
                      +|+.+++..+ +.......+.+. .|+.+.+.. .+......+|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            7777777554 443344455565 677776664 3333444555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.22  E-value=0.00094  Score=60.03  Aligned_cols=123  Identities=24%  Similarity=0.268  Sum_probs=52.1

Q ss_pred             ccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhh
Q 048006          257 ESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESF  336 (833)
Q Consensus       257 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~  336 (833)
                      ..|.++++|+.+.+.. .+.......|.++++|+.+.+.++ +.......|..++      +++.+.+.+ ....++...
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~------~l~~i~~~~-~~~~i~~~~   76 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK------SLESITFPN-NLKSIGDNA   76 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T------T-EEEEETS-TT-EE-TTT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc------ccccccccc-ccccccccc
Confidence            3456666666666653 444444555666666777766654 4444444455554      566666643 444455556


Q ss_pred             hcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccc
Q 048006          337 FSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQI  391 (833)
Q Consensus       337 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L  391 (833)
                      |..+++|+.+++..+ +.......|... .++.+.+.. .+.......|.++++|
T Consensus        77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            666777777777554 444444444444 555555544 3332333444444433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.31  E-value=0.00032  Score=72.08  Aligned_cols=290  Identities=19%  Similarity=0.111  Sum_probs=157.8

Q ss_pred             CcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCC-CCCCCccccccCCCCCCEEEccCCC-CCCCCCc-ccCC
Q 048006           58 NHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFND-FSGSPIPEFIGSLSKLRYLDLFGTV-FAGPIPP-QLGN  134 (833)
Q Consensus        58 ~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~-~~~~  134 (833)
                      |+.++|++.++....   ...+-....++++++.|++.++. ++....-..-..+++|++|+|-.|. ++...-. -...
T Consensus       138 g~lk~LSlrG~r~v~---~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVG---DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             cccccccccccccCC---cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence            456677777642100   00112234678888899888885 3433233334578999999998853 3322222 2356


Q ss_pred             ccccceecccCccCCC-CCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccC
Q 048006          135 LSRLQHLDLGSNYLFS-TGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSS  213 (833)
Q Consensus       135 l~~L~~L~Ls~n~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  213 (833)
                      +++|++|++|.+.-.. .+......+++.++.+.+.+|.-.+...+-..-+.+..+.++++..|........ +.....+
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~-~~i~~~c  293 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL-WLIACGC  293 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH-HHHhhhh
Confidence            8999999999987432 2223346677777777777665444333333334555566666656532221110 1222334


Q ss_pred             CCCCEEEccCCcCC-CCCCCcccccccCCcEEEccCcc-ccccccccc-cCCCCCcEEECcCCccccc--ccccccCCCC
Q 048006          214 TSLETLVLSDNNLT-SSIYPWLPNISSIFISIDLGFNQ-LQGSIPESF-QHMVYLEHLRLSFNELEGG--IPKFFGNMCS  288 (833)
Q Consensus       214 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~  288 (833)
                      ..|++|+.+++... ......++.-...|+.+-++.++ ++..--..+ .+++.|+.+++..+.....  +...=.+++.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            66777777665432 22222333333337777777765 332211222 2566788888777754321  1222236778


Q ss_pred             CcEEEccCCCCCchhhHHHhhcCC-ccccCCccEEEc-ccccccccChhhhcCCCCCCEEECcCCcc
Q 048006          289 LITLNLSNNKLSGQLSEIIQNLSS-GCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPL  353 (833)
Q Consensus       289 L~~L~Ls~n~l~~~~~~~l~~l~~-~~~~~~L~~L~L-~~~~~~~i~~~~~~~l~~L~~L~L~~n~l  353 (833)
                      |+++.++++.+...  +.+..+.. .+-...|+.+.+ +...+.+-....+..+++|+.+++-+++-
T Consensus       374 lr~lslshce~itD--~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  374 LRVLSLSHCELITD--EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             hccCChhhhhhhhh--hhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            88888887754322  12222221 111226777777 44444444445677788888888877753

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.78  E-value=0.0016  Score=73.86  Aligned_cols=112  Identities=23%  Similarity=0.260  Sum_probs=57.3

Q ss_pred             CCCCCEEeCCCCC-CCCCCccccccCCCCCCEEEccCC-CCCCCCC----cccCCccccceecccCcc-CCCCCCccccc
Q 048006           86 LHDLRHLNLSFND-FSGSPIPEFIGSLSKLRYLDLFGT-VFAGPIP----PQLGNLSRLQHLDLGSNY-LFSTGNLDWLS  158 (833)
Q Consensus        86 l~~L~~L~Ls~n~-~~~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p----~~~~~l~~L~~L~Ls~n~-~~~~~~~~~l~  158 (833)
                      .+.|+.|.+.++. +....+-.....+++|+.|+++++ ......+    .....+++|+.|+++.+. ++. .....++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHHHHH
Confidence            5666666666552 332112234456677777777652 1111111    223445666777777666 322 2222222


Q ss_pred             -CCCCCcEEecCCCC-CCCCchhHHhhcCCCCCCEEEccCCCC
Q 048006          159 -HLSYLRYLNLDESN-LANSSDWFQVIGKLHSLKTLSLHSCYL  199 (833)
Q Consensus       159 -~l~~L~~L~Ls~n~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l  199 (833)
                       .+++|++|.+.++. +++. .+......+++|++|++++|..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCcc
Confidence             36667776665555 3332 3444455566667776666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.29  E-value=0.00071  Score=65.72  Aligned_cols=83  Identities=22%  Similarity=0.266  Sum_probs=42.8

Q ss_pred             CCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCC
Q 048006          111 LSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLK  190 (833)
Q Consensus       111 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~  190 (833)
                      +.+.+.|+.-++.+.+.  ....+++.|++|.||-|.|   .....+..|++|++|+|..|.|.++.++ .-+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkI---ssL~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKI---SSLAPLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccc---ccchhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhh
Confidence            34455566666655431  1124556666666666665   2334455566666666666666554333 2344455555


Q ss_pred             EEEccCCCC
Q 048006          191 TLSLHSCYL  199 (833)
Q Consensus       191 ~L~Ls~n~l  199 (833)
                      .|.|..|.-
T Consensus        92 ~LWL~ENPC  100 (388)
T KOG2123|consen   92 TLWLDENPC  100 (388)
T ss_pred             hHhhccCCc
Confidence            555544433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.21  E-value=0.0072  Score=34.79  Aligned_cols=11  Identities=55%  Similarity=0.567  Sum_probs=4.6

Q ss_pred             cEEECCCcccc
Q 048006          689 VALNLSKNHLT  699 (833)
Q Consensus       689 ~~L~Ls~N~l~  699 (833)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.16  E-value=0.007  Score=34.86  Aligned_cols=21  Identities=57%  Similarity=0.895  Sum_probs=13.7

Q ss_pred             CCCEEeCCCCcCcccCCccccC
Q 048006          711 SLDFLDLSRNQLVGGIPSSLSQ  732 (833)
Q Consensus       711 ~L~~L~Ls~N~l~~~~p~~l~~  732 (833)
                      +|++|||++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677777777777 56655554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.74  E-value=0.0039  Score=70.60  Aligned_cols=116  Identities=24%  Similarity=0.196  Sum_probs=80.0

Q ss_pred             ccccCCCCCCEEeCCCC-CC-CCC--CccccccCCCCCCEEEccCCC-CCCCCCcccC-CccccceecccCcc-CCCCCC
Q 048006           81 PALLKLHDLRHLNLSFN-DF-SGS--PIPEFIGSLSKLRYLDLFGTV-FAGPIPPQLG-NLSRLQHLDLGSNY-LFSTGN  153 (833)
Q Consensus        81 ~~l~~l~~L~~L~Ls~n-~~-~~~--~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~-~l~~L~~L~Ls~n~-~~~~~~  153 (833)
                      +.....++|+.|+++++ .. ...  ........+++|+.|+++++. +++..-..+. .+++|++|.+.+|. ++..+.
T Consensus       208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl  287 (482)
T KOG1947|consen  208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL  287 (482)
T ss_pred             HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence            45677899999999973 21 111  112344567999999999998 5543333333 38899999988887 555444


Q ss_pred             cccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccC
Q 048006          154 LDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHS  196 (833)
Q Consensus       154 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~  196 (833)
                      ......++.|++|+++++.......+.....++++|+.|.+..
T Consensus       288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            4556789999999999988764444555566688888766543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.81  E-value=0.0019  Score=61.22  Aligned_cols=88  Identities=13%  Similarity=0.060  Sum_probs=60.1

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCC
Q 048006           82 ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLS  161 (833)
Q Consensus        82 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~  161 (833)
                      .+..+...++||++.|++.  .+...|..++.|..||++.|.+. .+|..++.+..++++++..|...  ..|..++..+
T Consensus        37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~--~~p~s~~k~~  111 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS--QQPKSQKKEP  111 (326)
T ss_pred             hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh--hCCccccccC
Confidence            4566667777777777765  35556667777777777777766 57777777777777777777664  3445566666


Q ss_pred             CCcEEecCCCCCC
Q 048006          162 YLRYLNLDESNLA  174 (833)
Q Consensus       162 ~L~~L~Ls~n~~~  174 (833)
                      .++++++.++.+.
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            6666666666543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.24  E-value=0.00067  Score=74.57  Aligned_cols=109  Identities=27%  Similarity=0.277  Sum_probs=55.9

Q ss_pred             CCcEEEccCCcccccC----CCCccCcCCccEEEcccCcCccccC----ccccCC-CCCcEeccCCCccCCCC----Ccc
Q 048006          510 SLVILNLENNSFSGRI----PDSMGFLQNIQTLSLHNNRLTGELS----SSFRNC-SQLRLLDLGKNALYGEI----PTW  576 (833)
Q Consensus       510 ~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~----p~~  576 (833)
                      .+..+.|.+|.+....    -..+...+.|+.|++++|.+.+..-    ..+... ..+++|++..|.+++.-    ...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            3677777777776432    2234556677777777777763211    122222 44566666666665322    222


Q ss_pred             hhhcCCccceEEecCCcccc----ccccccc----CCCCCCEEeccCCcCc
Q 048006          577 MGESLSNLIVLSLKSNKFHG----KIPFQLC----QLAFLQVLDLSLNNIS  619 (833)
Q Consensus       577 ~~~~l~~L~~L~L~~N~l~~----~~~~~l~----~l~~L~~L~Ls~N~l~  619 (833)
                      +.. ...++.++++.|.+..    .++..+.    ...++++|.+++|.++
T Consensus       168 L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  168 LEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             Hhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            332 4556666666665530    1122222    3445555666655554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.69  E-value=0.0046  Score=58.63  Aligned_cols=83  Identities=22%  Similarity=0.173  Sum_probs=71.4

Q ss_pred             CcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEC
Q 048006          662 GLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDL  741 (833)
Q Consensus       662 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  741 (833)
                      ...+.||++.|++. ..-..|.-++.|..||++.|.+. ..|..+++...+..+++..|..+ ..|.++...+.+++++.
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            34478999999986 45556777888999999999998 78899999999999999999988 78899999999999999


Q ss_pred             cCCcCc
Q 048006          742 SYNNLS  747 (833)
Q Consensus       742 s~N~l~  747 (833)
                      ..|++.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            999875

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.50  E-value=0.0012  Score=72.69  Aligned_cols=89  Identities=29%  Similarity=0.258  Sum_probs=43.3

Q ss_pred             cCCccEEEcccCcCccc----cCccccCCCC-CcEeccCCCccCCCCCcchhh---cC-CccceEEecCCcccccc----
Q 048006          532 LQNIQTLSLHNNRLTGE----LSSSFRNCSQ-LRLLDLGKNALYGEIPTWMGE---SL-SNLIVLSLKSNKFHGKI----  598 (833)
Q Consensus       532 l~~L~~L~L~~n~l~~~----~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~---~l-~~L~~L~L~~N~l~~~~----  598 (833)
                      ..++++|.+++|.++..    ....+...++ +..+++..|++.+..-..+..   .+ ..+++++++.|+++..-    
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            44555555655555411    1122333333 555666666654221111111   12 34566666666665332    


Q ss_pred             cccccCCCCCCEEeccCCcCcc
Q 048006          599 PFQLCQLAFLQVLDLSLNNISG  620 (833)
Q Consensus       599 ~~~l~~l~~L~~L~Ls~N~l~~  620 (833)
                      ...+..++.++++.+++|.+..
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHhhhHHHHHhhcccCcccc
Confidence            3334455667777777776643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.53  E-value=0.19  Score=26.72  Aligned_cols=9  Identities=56%  Similarity=0.759  Sum_probs=3.0

Q ss_pred             cEeccCCCc
Q 048006          560 RLLDLGKNA  568 (833)
Q Consensus       560 ~~L~L~~n~  568 (833)
                      +.|++++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.94  E-value=0.41  Score=28.74  Aligned_cols=14  Identities=57%  Similarity=0.591  Sum_probs=7.3

Q ss_pred             CCCCEEeCCCCcCc
Q 048006          710 KSLDFLDLSRNQLV  723 (833)
Q Consensus       710 ~~L~~L~Ls~N~l~  723 (833)
                      ++|+.|+|++|+|.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.94  E-value=0.41  Score=28.74  Aligned_cols=14  Identities=57%  Similarity=0.591  Sum_probs=7.3

Q ss_pred             CCCCEEeCCCCcCc
Q 048006          710 KSLDFLDLSRNQLV  723 (833)
Q Consensus       710 ~~L~~L~Ls~N~l~  723 (833)
                      ++|+.|+|++|+|.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.67  E-value=0.41  Score=28.73  Aligned_cols=21  Identities=38%  Similarity=0.436  Sum_probs=13.1

Q ss_pred             CCCcEeccCCCccCCCCCcchh
Q 048006          557 SQLRLLDLGKNALYGEIPTWMG  578 (833)
Q Consensus       557 ~~L~~L~L~~n~l~~~~p~~~~  578 (833)
                      ++|++|+|++|++. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 6665544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.67  E-value=0.41  Score=28.73  Aligned_cols=21  Identities=38%  Similarity=0.436  Sum_probs=13.1

Q ss_pred             CCCcEeccCCCccCCCCCcchh
Q 048006          557 SQLRLLDLGKNALYGEIPTWMG  578 (833)
Q Consensus       557 ~~L~~L~L~~n~l~~~~p~~~~  578 (833)
                      ++|++|+|++|++. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 6665544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.69  E-value=0.64  Score=27.25  Aligned_cols=19  Identities=37%  Similarity=0.459  Sum_probs=8.7

Q ss_pred             CCCcEEEccCCCCCchhhH
Q 048006          287 CSLITLNLSNNKLSGQLSE  305 (833)
Q Consensus       287 ~~L~~L~Ls~n~l~~~~~~  305 (833)
                      ++|++|+|++|++++....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHH
Confidence            4555555555555544433

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	833
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-47
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-11
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-47
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-18
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		9e-14
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-06
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		8e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		3e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  187 bits (474), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 194/601 (32%), Positives = 270/601 (44%), Gaps = 95/601 (15%)
Query: 249 NQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQ 308
           N++ G +  S    V LE L +S N    GIP F G+  +L  L++S NKLSG  S  I 
Sbjct: 188 NKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS 244
Query: 309 NLSSGCLEN-------------SLKSL-YL---ENSLTGVISESFFSNISNLKELHLANN 351
             +   L N              LKSL YL   EN  TG I +        L  L L+ N
Sbjct: 245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Query: 352 PLVLKLSHDWVPPF-----QLIIISLSSCKIGPHFP-KWLQTQNQIELLDISNTGISDTI 405
                  +  VPPF      L  ++LSS       P   L     +++LD+S    S  +
Sbjct: 305 HF-----YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359
Query: 406 PDWFWNLSNKFSFLDLASNQIKGK-LPNLSSRFGTSNPGIDISSNHFEGLIXXXXXXXXX 464
           P+   NLS     LDL+SN   G  LPNL      +   + + +N F G I         
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-- 417
Query: 465 XXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR 524
                               S+L  + LS N LSG +P    +   L  L L  N   G 
Sbjct: 418 --------------------SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 525 IPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNL 584
           IP  + +++ ++TL L  N LTGE+ S   NC+ L  + L  N L GEIP W+G  L NL
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENL 516
Query: 585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP--------KCFNNFTAMTQER 636
            +L L +N F G IP +L     L  LDL+ N  +G IP        K   NF A  +  
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 637 --SSDPTIKD----KLMLTWKGSEREYRSTL------------------------GLVKS 666
              +D   K+      +L ++G   E  + L                        G +  
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 667 LELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGI 726
           L++S N L+G +P+EI  +  L  LNL  N ++G I  ++G L+ L+ LDLS N+L G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 727 PSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAA 786
           P ++S L+ L+ +DLS NNLSG IP + Q ++F    +  NP LCG PLP +C D  +A 
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC-DPSNAD 754
Query: 787 G 787
           G
Sbjct: 755 G 755

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 141/309 (45%), Gaps = 47/309 (15%)
Query: 510 SLVILNLENNSFSGRIPD--SMGFLQNIQTLSLHNNRLT--GELSSSFRNCSQLRLLDLG 565
           SL  L+L  NS SG +    S+G    ++ L++ +N L   G++S   +  + L +LDL 
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLS 159
Query: 566 KNALYGE-IPTW-MGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP 623
            N++ G  +  W + +    L  L++  NK  G +    C    L+ LD+S NN S  IP
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIP 217
Query: 624 KCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIM 683
               + +A+     S     +KL     G      ST   +K L +S+N   G +P   +
Sbjct: 218 -FLGDCSALQHLDIS----GNKL----SGDFSRAISTCTELKLLNISSNQFVGPIPP--L 266
Query: 684 DLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGIP--------------- 727
            L  L  L+L++N  TG+I   + G   +L  LDLS N   G +P               
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 728 ----------SSLSQLSGLSVMDLSYNNLSGKIP-TVTQLQSFNDTVYAGNPELCGLPLP 776
                      +L ++ GL V+DLS+N  SG++P ++T L +   T+   +    G  LP
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 777 NKCRDEESA 785
           N C++ ++ 
Sbjct: 387 NLCQNPKNT 395

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  187 bits (474), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 194/601 (32%), Positives = 270/601 (44%), Gaps = 95/601 (15%)
Query: 249 NQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQ 308
           N++ G +  S    V LE L +S N    GIP F G+  +L  L++S NKLSG  S  I 
Sbjct: 185 NKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS 241
Query: 309 NLSSGCLEN-------------SLKSL-YL---ENSLTGVISESFFSNISNLKELHLANN 351
             +   L N              LKSL YL   EN  TG I +        L  L L+ N
Sbjct: 242 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 301
Query: 352 PLVLKLSHDWVPPF-----QLIIISLSSCKIGPHFP-KWLQTQNQIELLDISNTGISDTI 405
                  +  VPPF      L  ++LSS       P   L     +++LD+S    S  +
Sbjct: 302 HF-----YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 356
Query: 406 PDWFWNLSNKFSFLDLASNQIKGK-LPNLSSRFGTSNPGIDISSNHFEGLIXXXXXXXXX 464
           P+   NLS     LDL+SN   G  LPNL      +   + + +N F G I         
Sbjct: 357 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-- 414
Query: 465 XXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR 524
                               S+L  + LS N LSG +P    +   L  L L  N   G 
Sbjct: 415 --------------------SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 525 IPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNL 584
           IP  + +++ ++TL L  N LTGE+ S   NC+ L  + L  N L GEIP W+G  L NL
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENL 513
Query: 585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP--------KCFNNFTAMTQER 636
            +L L +N F G IP +L     L  LDL+ N  +G IP        K   NF A  +  
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 573
Query: 637 --SSDPTIKD----KLMLTWKGSEREYRSTL------------------------GLVKS 666
              +D   K+      +L ++G   E  + L                        G +  
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 667 LELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGI 726
           L++S N L+G +P+EI  +  L  LNL  N ++G I  ++G L+ L+ LDLS N+L G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 727 PSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAA 786
           P ++S L+ L+ +DLS NNLSG IP + Q ++F    +  NP LCG PLP +C D  +A 
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC-DPSNAD 751
Query: 787 G 787
           G
Sbjct: 752 G 752

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 141/309 (45%), Gaps = 47/309 (15%)
Query: 510 SLVILNLENNSFSGRIPD--SMGFLQNIQTLSLHNNRLT--GELSSSFRNCSQLRLLDLG 565
           SL  L+L  NS SG +    S+G    ++ L++ +N L   G++S   +  + L +LDL 
Sbjct: 98  SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLS 156
Query: 566 KNALYGE-IPTW-MGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP 623
            N++ G  +  W + +    L  L++  NK  G +    C    L+ LD+S NN S  IP
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIP 214
Query: 624 KCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIM 683
               + +A+     S     +KL     G      ST   +K L +S+N   G +P   +
Sbjct: 215 -FLGDCSALQHLDIS----GNKL----SGDFSRAISTCTELKLLNISSNQFVGPIPP--L 263
Query: 684 DLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGIP--------------- 727
            L  L  L+L++N  TG+I   + G   +L  LDLS N   G +P               
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 728 ----------SSLSQLSGLSVMDLSYNNLSGKIP-TVTQLQSFNDTVYAGNPELCGLPLP 776
                      +L ++ GL V+DLS+N  SG++P ++T L +   T+   +    G  LP
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 777 NKCRDEESA 785
           N C++ ++ 
Sbjct: 384 NLCQNPKNT 392

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 126/280 (45%), Gaps = 52/280 (18%)
Query: 534 NIQTLSLHNNRLTG-------ELSSSFRNCSQLRLLDLGK-NALYGEIPTWMGESLSNLI 585
           + QT  ++N  L+G        + SS  N   L  L +G  N L G IP  + + L+ L 
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLH 104
Query: 586 VLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDK 645
            L +      G IP  L Q+  L  LD S N +SG +P             SS P +   
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI----------SSLPNL--- 151
Query: 646 LMLTWKGSE------REYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLT 699
           + +T+ G+         Y S   L  S+ +S N L G +P    +L  L  ++LS+N L 
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210
Query: 700 GQIS-----------------------PKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGL 736
           G  S                        K+G  K+L+ LDL  N++ G +P  L+QL  L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 737 SVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLP 776
             +++S+NNL G+IP    LQ F+ + YA N  LCG PLP
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 161/641 (25%), Positives = 266/641 (41%), Gaps = 114/641 (17%)
Query: 234 LPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPK--FFGNMCSLIT 291
           LPN+  +    DLG +++    P++FQ + +L  LRL F  L   + K  +F N+ +L  
Sbjct: 72  LPNLRIL----DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 292 LNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI--SNLKELHLA 349
           L+LS N    Q+  +  + S G L NSLKS+   ++   ++ E     +    L    LA
Sbjct: 128 LDLSKN----QIRSLYLHPSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 350 NNPLVLKLSHDW---VPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIP 406
            N L  ++S DW   + PF+ +++                     E+LD+S  G +  I 
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVL---------------------EILDVSGNGWTVDIT 221
Query: 407 DWFWN-LSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIXXXXXXXXXX 465
             F N +S   +F  + ++ I G      + FG  N   D   N F GL           
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMG------AGFGFHNIK-DPDQNTFAGLARSSVRHLDL- 273
Query: 466 XXXXXXXXGSISFLCSISG------SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENN 519
                    S  F+ S++         L  ++L+ N ++    + ++  D+L +LNL  N
Sbjct: 274 ---------SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 520 SFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYG-----EIP 574
                   +   L  +  + L  N +      +F+   +L+ LDL  NAL        IP
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384
Query: 575 TWM--GESLSNLIVLSLKSNKFHGK--------IPFQLCQLAFLQVLDLSLNNISGKIPK 624
                G  L  L  ++L +N  H          I + L ++  LQ+L L+ N  S     
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS---- 440
Query: 625 CFNNFTAMTQERSSDPTI------KDKLMLTWKGSEREYRSTLGL--VKSLELSNNNLNG 676
                 +  Q  S +P++      ++ L L W+ +E  +    GL  ++ L L++N LN 
Sbjct: 441 -----CSGDQTPSENPSLEQLFLGENMLQLAWE-TELCWDVFEGLSHLQVLYLNHNYLNS 494
Query: 677 AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGL 736
             P     L  L  L+L+ N LT      +    +L+ LD+SRNQL+   P        L
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV---FVSL 549
Query: 737 SVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGI----TE 792
           SV+D+++N    K     +L +F + +   N  + G P    C   +S +G  +    TE
Sbjct: 550 SVLDITHN----KFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605
Query: 793 GRDDADT--SEDEDQFI----TLGFYVSLILGFIVGFWGVC 827
           G D+ +   S     FI    TL  ++  IL  +  F G C
Sbjct: 606 GCDEEEVLKSLKFSLFIVCTVTLTLFLMTILT-VTKFRGFC 645

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 221 LSDNNLT---SSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG 277
           L+DN L    + I+  L N+ +++++     N+LQ      F  +V L  LRL  N+L+ 
Sbjct: 68  LNDNKLQTLPAGIFKELKNLETLWVTD----NKLQALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 278 GIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYLENSLTGVISES 335
             P+ F ++  L  L+L  N+L        Q+L  G  +   SLK L L N+    + E 
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNEL--------QSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 336 FFSNISNLKELHLANNPL 353
            F  ++ LK L L NN L
Sbjct: 176 AFDKLTELKTLKLDNNQL 193

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 133/542 (24%), Positives = 218/542 (40%), Gaps = 102/542 (18%)
Query: 225 NLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFG 284
           N  S + P L  I  +   ++L  N+L     ++F     L  L L  N +       F 
Sbjct: 59  NSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFK 118
Query: 285 NMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESF-FSNISN 342
           N  +LI L+LS+N LS         L +G    +L+ L L +N +  + SE   F   S+
Sbjct: 119 NQKNLIKLDLSHNGLSST------KLGTGVQLENLQELLLAKNKILALRSEELEFLGNSS 172
Query: 343 LKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGIS 402
           L++L L++NPL       +    +L  + L++ ++ PH  + L         ++SNT I 
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKL-------CWELSNTSIQ 225
Query: 403 DTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSN-PGIDISSNHFEGLIXXXXXX 461
           +               L LA+NQ+     +  S    +N   +D+S N+   +       
Sbjct: 226 N---------------LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDV------- 263
Query: 462 XXXXXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSF 521
                       GS S+L S     L Y+ L  N +    P  ++   +L  L+L+  +F
Sbjct: 264 ----------GNGSFSYLPS-----LRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR-AF 307
Query: 522 SGR---------IPD-SMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYG 571
           + +         I D S  +L+ ++ L++ +N +    S++F     L+ L L K   + 
Sbjct: 308 TKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT--FT 365
Query: 572 EIPTWMGESL-----SNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCF 626
            + T   E+      S L+ L+L  N            L  L++LDL LN I  K+    
Sbjct: 366 SLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSG-- 423
Query: 627 NNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLV 686
                  QE              W+G    +   L   K L+LS ++    VP     ++
Sbjct: 424 -------QE--------------WRGLRNIFEIYLSYNKYLQLSTSSF-ALVPSLQRLML 461
Query: 687 GLVALNLSKNHLTGQISPK-IGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNN 745
             VAL   KN     ISP     L++L  LDLS N +       L  L  L ++D  +NN
Sbjct: 462 RRVAL---KN---VDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNN 515
Query: 746 LS 747
           L+
Sbjct: 516 LA 517

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 108/268 (40%), Gaps = 24/268 (8%)
Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
           S+L  +D   N +S   P+       L +LNL++N  S     +  F  N+  L L +N 
Sbjct: 49  SQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNS 108
Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ 604
           +    S+ F+N   L  LDL  N L     T +G  +    +  L   K +  +  +  +
Sbjct: 109 IHKIKSNPFKNQKNLIKLDLSHNGLSS---TKLGTGVQLENLQELLLAK-NKILALRSEE 164
Query: 605 LAF-----LQVLDLSLNNISGKIPKCFNN----FTAMTQERSSDPTIKDKLMLTWKGSER 655
           L F     L+ LDLS N +    P CF      F  +      +P + +K  L W+ S  
Sbjct: 165 LEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEK--LCWELSNT 222
Query: 656 EYRSTLGLVKSLELSNNNLNGAVPEEIMDL--VGLVALNLSKNHLTGQISPKIGQLKSLD 713
                   +++L L+NN L          L    L  L+LS N+L    +     L SL 
Sbjct: 223 S-------IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLR 275
Query: 714 FLDLSRNQLVGGIPSSLSQLSGLSVMDL 741
           +L L  N +    P S   LS L  + L
Sbjct: 276 YLSLEYNNIQRLSPRSFYGLSNLRYLSL 303

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 130/321 (40%), Gaps = 62/321 (19%)
Query: 479 LCSISGSK---LTYVDLSSNLLSGKL-PDCWWTFDSLVILNLENNSFSGRIPDSMGF--L 532
           LC IS +    LT++ +  N+    L   C     +L  L+L +N        S+    L
Sbjct: 313 LCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 533 QNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN 592
            ++QTL+L +N   G  S +F+ C QL LLDL    L+   P                  
Sbjct: 373 SHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAP------------------ 414
Query: 593 KFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKG 652
               + PFQ   L FLQVL+L+          CF + T+     +  P ++    L  KG
Sbjct: 415 ----QSPFQ--NLHFLQVLNLTY---------CFLD-TSNQHLLAGLPVLRH---LNLKG 455
Query: 653 --------SEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISP 704
                   ++     T+G ++ L LS+  L     +    L  +  ++LS N LT     
Sbjct: 456 NHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSID 515
Query: 705 KIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV----------T 754
            +  LK + +L+L+ N +    P  L  LS  S ++LS+N L      +           
Sbjct: 516 SLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKENLH 574
Query: 755 QLQSFNDTVYAGNPELCGLPL 775
           +L+   +T  A  P L G+ L
Sbjct: 575 KLEGSEETTCANPPSLRGVKL 595

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	833
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-65
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-32
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  552 bits (1424), Expect = 0.0
 Identities = 208/798 (26%), Positives = 337/798 (42%), Gaps = 66/798 (8%)

Query: 11  CIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDF 70
            +  E   L++FK  L D   +L  W       + C + G+ C +  + V  +DL     
Sbjct: 9   SLYREIHQLISFKDVLPD-KNLLPDWSSNK---NPCTFDGVTCRD--DKVTSIDLSSKPL 62

Query: 71  DSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPP 130
           +       +S +LL L  L  L LS +  +GS +  F    + L  LDL     +GP+  
Sbjct: 63  NVG--FSAVSSSLLSLTGLESLFLSNSHINGS-VSGF-KCSASLTSLDLSRNSLSGPVTT 118

Query: 131 --QLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANS-SDWFQVIGKLH 187
              LG+ S L+ L++ SN L   G +     L+ L  L+L  ++++ +    + +     
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178

Query: 188 SLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLG 247
            LK L++    +   + +S        +LE L +S NN ++ I P+L + S++   +D+ 
Sbjct: 179 ELKHLAISGNKISGDVDVS-----RCVNLEFLDVSSNNFSTGI-PFLGDCSAL-QHLDIS 231

Query: 248 FNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL-SEI 306
            N+L G    +      L+ L +S N+  G IP     + SL  L+L+ NK +G++   +
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 289

Query: 307 IQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF 365
                +      L  L L  N   G +   F  + S L+ L L++N    +L  D +   
Sbjct: 290 SGACDT------LTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 366 -QLIIISLSSCKIGPHFPKWL-QTQNQIELLDISNTGISDTIPDWFWNLSNKF-SFLDLA 422
             L ++ LS  +     P+ L      +  LD+S+   S  I              L L 
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402

Query: 423 SNQIKGKLP----NLSS-RFGTSNPGIDISSNHFEGLIPPLPSNSS---FLNLSKNRFSG 474
           +N   GK+P    N S          + +S N+  G IP    + S    L L  N   G
Sbjct: 403 NNGFTGKIPPTLSNCSELVS------LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 475 SI-SFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQ 533
            I   L       L  + L  N L+G++P       +L  ++L NN  +G IP  +G L+
Sbjct: 457 EIPQELMY--VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 534 NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNK 593
           N+  L L NN  +G + +   +C  L  LDL  N   G IP  M +    +      +N 
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI-----AANF 569

Query: 594 FHGKIPFQLCQLAFLQVLDLSLN--NISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWK 651
             GK    +      +    + N     G   +  N  +       +           + 
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS--------RVYG 621

Query: 652 GSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKS 711
           G         G +  L++S N L+G +P+EI  +  L  LNL  N ++G I  ++G L+ 
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681

Query: 712 LDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELC 771
           L+ LDLS N+L G IP ++S L+ L+ +DLS NNLSG IP + Q ++F    +  NP LC
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741

Query: 772 GLPLPNKCRDEESAAGPG 789
           G PLP             
Sbjct: 742 GYPLPRCDPSNADGYAHH 759

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  285 bits (731), Expect = 2e-85
 Identities = 138/700 (19%), Positives = 237/700 (33%), Gaps = 74/700 (10%)

Query: 89  LRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYL 148
               + S    +   +P+ +   + +  L+L                S+L  LD+G N +
Sbjct: 6   HEVADCSHLKLTQ--VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 149 FSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLN 208
            S    +    L  L+ LNL  + L+  SD  +      +L  L L S  +  +      
Sbjct: 62  -SKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 209 HLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQ--HMVYLE 266
                 +L TL LS N L+S+       + ++   + L  N++Q    E         L+
Sbjct: 119 KQ---KNLITLDLSHNGLSSTKLGTQVQLENL-QELLLSNNKIQALKSEELDIFANSSLK 174

Query: 267 HLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-E 325
            L LS N+++   P  F  +  L  L L+N +L   L+E +    +     S+++L L  
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN---TSIRNLSLSN 231

Query: 326 NSLTGVISESFFS-NISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKW 384
           + L+   + +F     +NL  L L+ N L                       +G     W
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLN---------------------VVGNDSFAW 270

Query: 385 LQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGI 444
           L    Q+E   +    I          L N   +L+L  +  K                 
Sbjct: 271 LP---QLEYFFLEYNNIQHLFSHSLHGLFN-VRYLNLKRSFTKQ---------------- 310

Query: 445 DISSNHFEGLIPPLPSNSS---FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKL 501
            IS      +             LN+  N   G  S + +     L Y+ LS++  S + 
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLR- 368

Query: 502 PDCWWTFD-----SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELS-SSFRN 555
                TF       L ILNL  N  S    D+  +L +++ L L  N +  EL+   +R 
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428

Query: 556 CSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHG--KIPFQLCQLAFLQVLDL 613
              +  + L  N             + +L  L L+          P     L  L +LDL
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 614 SLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNN 673
           S NNI+            +         +         G    +   L  +  L L +N 
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547

Query: 674 LNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLS-Q 732
            +    E   DL  L  ++L  N+L    +       SL  L+L +N +           
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607

Query: 733 LSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCG 772
              L+ +D+ +N       ++    ++ +  +   PEL  
Sbjct: 608 FRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  249 bits (637), Expect = 4e-72
 Identities = 115/570 (20%), Positives = 203/570 (35%), Gaps = 47/570 (8%)

Query: 74  PLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLG 133
            L            +L  L+L  N                L  LDL     +        
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 134 NLSRLQHLDLGSNYL--FSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKT 191
            L  LQ L L +N +    +  LD     S L+ L L  + +   S        +  L  
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIF-ANSSLKKLELSSNQIKEFSP--GCFHAIGRLFG 199

Query: 192 LSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI-FISIDLGFNQ 250
           L L++  L P +   L    ++TS+  L LS++ L+++       +       +DL +N 
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 251 LQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEI-IQN 309
           L     +SF  +  LE+  L +N ++         + ++  LNL  +     +S   +  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 310 LSSGCLEN--SLKSLYLE-NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQ 366
           +     +    L+ L +E N + G+ S   F+ + NLK L L+N+               
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNS--------------- 363

Query: 367 LIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQI 426
                 S   +       L   + + +L+++   IS    D F  L +    LDL  N+I
Sbjct: 364 ----FTSLRTLTNETFVSL-AHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEI 417

Query: 427 KGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSS---FLNLSKNRFSGSISFLCSIS 483
             +L     R   +   I +S N +  L     +       L L +       S      
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 484 G-SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFS--------GRIPDSMGFLQN 534
               LT +DLS+N ++    D     + L IL+L++N+ +        G     +  L +
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 535 IQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKF 594
           +  L+L +N         F++  +L+++DLG N L     +    +  +L  L+L+ N  
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN-NQVSLKSLNLQKNLI 596

Query: 595 HGKIPFQLC-QLAFLQVLDLSLNNISGKIP 623
                         L  LD+  N       
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  234 bits (598), Expect = 1e-66
 Identities = 120/563 (21%), Positives = 195/563 (34%), Gaps = 68/563 (12%)

Query: 75  LRGTISPALLKLHDLRHLNLSFNDFSGSPIPEF-IGSLSKLRYLDLFGTVFAGPIPPQLG 133
           L  T     ++L +L+ L LS N        E  I + S L+ L+L         P    
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 134 NLSRLQHLDLGSNYL--FSTGNLDWLSHLSYLRYLNLDESNLAN-SSDWFQVIGKLHSLK 190
            + RL  L L +  L    T  L      + +R L+L  S L+  S+  F  + K  +L 
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL-KWTNLT 251

Query: 191 TLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI--------FI 242
            L L    L  V   S   L     LE   L  NN+       L  + ++        F 
Sbjct: 252 MLDLSYNNLNVVGNDSFAWL---PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQ 302
              +    L      SFQ +  LEHL +  N++ G     F  + +L  L+LSN+  S  
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS-- 366

Query: 303 LSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDW 361
           L  +          + L  L L +N ++ + S++F S + +L+ L L  N +  +L+   
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-SWLGHLEVLDLGLNEIGQELTGQ- 424

Query: 362 VPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDL 421
                         +              I  + +S         + F  + +    L L
Sbjct: 425 ---------EWRGLE-------------NIFEIYLSYNKYLQLTRNSFALVPS-LQRLML 461

Query: 422 ASNQIKGKLPNLSSRFGTSNPGI-DISSNHFEGLIPPLPSNSS---FLNLSKNRFSGSIS 477
               +K    + S      N  I D+S+N+   +   +         L+L  N  +    
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA---- 517

Query: 478 FLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQT 537
                         L  +   G           L ILNLE+N F     +    L  ++ 
Sbjct: 518 -------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564

Query: 538 LSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGK 597
           + L  N L    +S F N   L+ L+L KN +        G +  NL  L ++ N F   
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 598 IPFQLCQLAFLQVLDLSLNNISG 620
                    F+  ++ +  NI  
Sbjct: 625 CES---IAWFVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  222 bits (568), Expect = 1e-62
 Identities = 121/565 (21%), Positives = 202/565 (35%), Gaps = 92/565 (16%)

Query: 213 STSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSF 272
           + S E    S   LT        NI+ +    +L  NQL+     +F     L  L + F
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPTNITVL----NLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 273 NELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGV 331
           N +    P+    +  L  LNL +N+LS    +     +      +L  L+L  NS+  +
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT------NLTELHLMSNSIQKI 112

Query: 332 ISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQ----LIIISLSSCKIGPHFPKWLQT 387
            +   F    NL  L L++N     LS   +        L  + LS+ KI     + L  
Sbjct: 113 KNNP-FVKQKNLITLDLSHN----GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

Query: 388 QNQIEL--LDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGID 445
                L  L++S+  I +  P  F  +      L L + Q+   L             ++
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLT--------EKLCLE 218

Query: 446 ISSNHFEGLIPPLPSNSSFLNLSKNRFSGSI-SFLCSISGSKLTYVDLSSNLLSGKLPDC 504
           +++                L+LS ++ S +  +    +  + LT +DLS N L+    D 
Sbjct: 219 LANTSIR-----------NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 505 WWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELS---------SSFRN 555
           +     L    LE N+       S+  L N++ L+L  +     +S          SF+ 
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 556 CSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP----FQLCQLAFLQVL 611
              L  L++  N + G         L NL  LSL ++    +      F     + L +L
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 612 DLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN 671
           +L+ N IS      F+                                 LG ++ L+L  
Sbjct: 387 NLTKNKISKIESDAFSW--------------------------------LGHLEVLDLGL 414

Query: 672 NNLNGAVP-EEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL--VGGIPS 728
           N +   +  +E   L  +  + LS N            + SL  L L R  L  V   PS
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 729 SLSQLSGLSVMDLSYNNLSGKIPTV 753
               L  L+++DLS NN++     +
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDM 499

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.8 bits (231), Expect = 1e-19
 Identities = 45/213 (21%), Positives = 69/213 (32%), Gaps = 13/213 (6%)

Query: 75  LRGTISPALLKLHDLRHLNLSFNDFSGSP-IPEFIGSLSKLRYLDLFGTVFAGPIPPQLG 133
                  +   +  L+ L L           P     L  L  LDL     A      L 
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 134 NLSRLQHLDLGSNYL-------FSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKL 186
            L +L+ LDL  N L          G + +L  LS+L  LNL+ +         +V   L
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV--EVFKDL 559

Query: 187 HSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDL 246
             LK + L    L  +     N+     SL++L L  N +TS               +D+
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQ---VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

Query: 247 GFNQLQGSIPESFQHMVYLEHLRLSFNELEGGI 279
            FN    +       + ++     +  EL    
Sbjct: 617 RFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 24/142 (16%), Positives = 47/142 (33%), Gaps = 10/142 (7%)

Query: 61  ILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLF 120
            L  L  ++ +S             L +L+ ++L  N+ +  P      +   L+ L+L 
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQ 592

Query: 121 GTVFAGPIPPQLG-NLSRLQHLDLGSNYLFST-GNLDWLS---HLSYLRYLNLDESNLAN 175
             +         G     L  LD+  N    T  ++ W     + ++     L    L N
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCN 652

Query: 176 SSDWFQVIGKLHSLKTLSLHSC 197
           +   +   G    ++     SC
Sbjct: 653 TPPHYH--GF--PVRLFDTSSC 670

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  239 bits (611), Expect = 8e-69
 Identities = 101/756 (13%), Positives = 208/756 (27%), Gaps = 167/756 (22%)

Query: 13  DEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDS 72
           D      L+  A  + +   L         ++     G       N          + D 
Sbjct: 15  DAIVPIKLSRTAEYIKDYLALKEIWDALNGKNW-SQQGFGTQPGANWN-----FNKELDM 68

Query: 73  FPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGP----I 128
           +  +  +S  L     +  L+L     SG  +P+ IG L++L  L L             
Sbjct: 69  WGAQPGVS--LNSNGRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 129 PPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHS 188
           P  +      +       +      +D+     +   +    ++        +       
Sbjct: 126 PKGISANMSDEQKQKMRMHY-QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184

Query: 189 LKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGF 248
              +   S  +   +  ++  L   T L    + ++   +        I   + + +  +
Sbjct: 185 DTQIGQLSNNIT-FVSKAVMRL---TKLRQFYMGNSPFVAEN------ICEAWENENSEY 234

Query: 249 NQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG--QLSEI 306
            Q   +    + ++  L  + +        +P F   +  +  +N++ N+     QL + 
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 307 IQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF 365
            Q L+   +   ++ +Y+  N+L     E+    +  L  L    N L            
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE----------- 343

Query: 366 QLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQ 425
                                                      F +     + L+LA NQ
Sbjct: 344 --------------------------------------GKLPAFGSEIK-LASLNLAYNQ 364

Query: 426 IKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGS 485
           I                   I +N               L+ + N+     +   + S S
Sbjct: 365 ITE-----------------IPANFCGFT-----EQVENLSFAHNKLKYIPNIFDAKSVS 402

Query: 486 KLTYVDLSSNLLSG-------KLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTL 538
            ++ +D S N +          L    +   ++  +NL NN  S    +       + ++
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 539 SLHNNRLTG-------ELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS 591
           +L  N LT        + + +F+N   L  +DL  N L      +   +L  L+ + L  
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522

Query: 592 NKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWK 651
           N F    P Q    + L+   +                                      
Sbjct: 523 NSFSK-FPTQPLNSSTLKGFGIRNQ----------------------------------- 546

Query: 652 GSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKS 711
                           +   N      PE I     L  L +  N +   ++ KI    +
Sbjct: 547 ---------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPN 588

Query: 712 LDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
           +  LD+  N  +    S +       +  L Y+   
Sbjct: 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  188 bits (480), Expect = 5e-51
 Identities = 68/543 (12%), Positives = 161/543 (29%), Gaps = 82/543 (15%)

Query: 242 ISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFF-GNMCSLITLNLSNNKLS 300
             + L      G +P++   +  LE L L  +  +     F    + + ++         
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 301 GQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL------V 354
                 +         + +K     +     I +S         ++   +N +      V
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT-LKDTQIGQLSNNITFVSKAV 202

Query: 355 LKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSN 414
           ++L+        L    + +                 E  +        T    + NL +
Sbjct: 203 MRLTK-------LRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLKD 250

Query: 415 KFSFLDLASNQIKGKLP-------NLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNL 467
             + +++ +     KLP        +          I+++ N             +  + 
Sbjct: 251 -LTDVEVYNCPNLTKLPTFLKALPEMQL--------INVACNRGISGEQLKDDWQALADA 301

Query: 468 SKNRFSGSISFLCSISGSKLTYVDLSSN-LLSGKLPDCWWTFDSLVILNLENNSFSGRIP 526
                           G K+  + +  N L +  +         L +L    N   G   
Sbjct: 302 PV--------------GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KL 346

Query: 527 DSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIV 586
            + G    + +L+L  N++T   ++      Q+  L    N L      +  +S+S +  
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 587 LSLKSNKFHG-------KIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQ----- 634
           +    N+           +     +   +  ++LS N IS    + F+  + ++      
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 635 -ERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD--LVGLVAL 691
              +  P    K       +         L+ S++L  N L   + ++     L  LV +
Sbjct: 467 NMLTEIPKNSLKDENENFKN-------TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGI 518

Query: 692 NLSKNHLTGQISPKIGQLKSLDFLDL------SRNQLVGGIPSSLSQLSGLSVMDLSYNN 745
           +LS N  +     +     +L    +        N+ +   P  ++    L+ + +  N+
Sbjct: 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 746 LSG 748
           +  
Sbjct: 578 IRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  178 bits (454), Expect = 2e-47
 Identities = 75/534 (14%), Positives = 175/534 (32%), Gaps = 65/534 (12%)

Query: 62  LLDLQPIDFDSFPLRGTISPAL--LKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDL 119
            +  +         + T           DL    ++ +      I +      K   +  
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK-SIKKSSRITLKDTQIGQ 190

Query: 120 FGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDW 179
                   +   +  L++L+   +G++   +                N + +    + D 
Sbjct: 191 LSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC------EAWENENSEYAQQYKTED- 242

Query: 180 FQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTS--SIYPWLPNI 237
                 L  L  + +++C     +P  L  L     ++ + ++ N   S   +      +
Sbjct: 243 -LKWDNLKDLTDVEVYNCPNLTKLPTFLKAL---PEMQLINVACNRGISGEQLKDDWQAL 298

Query: 238 SSIFI-----SIDLGFNQLQ-GSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLIT 291
           +   +      I +G+N L+   +  S Q M  L  L   +N+LEG +P F G+   L +
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLAS 357

Query: 292 LNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLE-NSLTGVISESFFSNISNLKELHLAN 350
           LNL+ N+++   +              +++L    N L  + +     ++S +  +  + 
Sbjct: 358 LNLAYNQITEIPANFCGFTEQ------VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 351 NPL-------VLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISD 403
           N +          L         +  I+LS+ +I     +   T + +  +++    +++
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

Query: 404 TIPDWFWNLSNKFS------FLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPP 457
              +   + +  F        +DL  N++     +  +       GID+S N F    P 
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

Query: 458 LPSN---------SSFLNLSKNRFSGSI-SFLCSISGSKLTYVDLSSNLLSGKLPDCWWT 507
            P N          +  +   NR        +       LT + + SN +   + +    
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP--SLTQLQIGSNDIRK-VNE--KI 585

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRL 561
             ++ +L++++N         +          L  ++         R C  L +
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-----DIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (254), Expect = 2e-22
 Identities = 34/273 (12%), Positives = 75/273 (27%), Gaps = 30/273 (10%)

Query: 489 YVDLSSNLLSGKLPDCWWTFDSLVIL-----NLENNSFSGRIPDSMGFLQNIQTLSLHNN 543
           Y+ L     +    +                N E + +  +   S+     +  LSL   
Sbjct: 32  YLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGF 91

Query: 544 RLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLK---SNKFHGKIPF 600
             +G +  +    ++L +L LG +        +  + +S  +    K      +      
Sbjct: 92  GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD 151

Query: 601 QLCQLAF--LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYR 658
              +  F  L    ++ +     I K        TQ       I                
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT------------FVS 199

Query: 659 STLGLVKSLE---LSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFL 715
             +  +  L    + N+        E  +       N            K   LK L  +
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 716 DLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG 748
           ++     +  +P+ L  L  + +++++ N    
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 6/122 (4%)

Query: 659 STLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQ----ISPKIGQLKSLDF 714
           ++ G V  L L     +G VP+ I  L  L  L L  +             I    S + 
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 715 LDLSRNQLVGGIPSSLS--QLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCG 772
               R                S L    ++ +     I   +++   +  +   +  +  
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 773 LP 774
           + 
Sbjct: 198 VS 199

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 11/61 (18%), Positives = 20/61 (32%)

Query: 692 NLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIP 751
           N   +    Q    +     +  L L      G +P ++ QL+ L V+ L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 752 T 752
            
Sbjct: 123 L 123

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  236 bits (605), Expect = 3e-68
 Identities = 123/637 (19%), Positives = 224/637 (35%), Gaps = 85/637 (13%)

Query: 128 IPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLH 187
           IP  L      ++LDL  N L   G+         L+ L+L    +    D       L 
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIED--GAYQSLS 76

Query: 188 SLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLG 247
            L TL L    +  +   + + L   +SL+ LV  + NL S     + ++ ++   +++ 
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGL---SSLQKLVAVETNLASLENFPIGHLKTL-KELNVA 132

Query: 248 FNQLQG-SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSL----ITLNLSNNKLSGQ 302
            N +Q   +PE F ++  LEHL LS N+++         +  +    ++L+LS N ++  
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 303 LSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDW 361
                + +        L  L L  N  +  + ++    ++ L+   L       +   + 
Sbjct: 193 QPGAFKEIR-------LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG--EFRNEGNL 243

Query: 362 VPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDL 421
               +  +  L +  I          + ++  LD       D I D F  L+N  S   L
Sbjct: 244 EKFDKSALEGLCNLTI---------EEFRLAYLDYY----LDDIIDLFNCLTNV-SSFSL 289

Query: 422 ASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCS 481
            S  I+  + + S  +      +++ +  F         +   L  + N+   + S    
Sbjct: 290 VSVTIER-VKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--- 343

Query: 482 ISGSKLTYVDLSSNLLS--GKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLS 539
           +    L ++DLS N LS  G      +   SL  L+L  N     +  +   L+ ++ L 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 540 LHNNRLTGELSSS-FRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKI 598
             ++ L      S F +   L  LD+                LS+L VL +  N F    
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENF 461

Query: 599 -PFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREY 657
            P    +L  L  LDLS   +    P  FN+ +++                         
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL------------------------- 496

Query: 658 RSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQL-KSLDFLD 716
                  + L +S+NN           L  L  L+ S NH+      ++     SL FL+
Sbjct: 497 -------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

Query: 717 LSRNQLVGGIPSS--LSQLSGLSVMDLSYNNLSGKIP 751
           L++N           L  +     + +    +    P
Sbjct: 550 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  231 bits (590), Expect = 3e-66
 Identities = 111/577 (19%), Positives = 209/577 (36%), Gaps = 60/577 (10%)

Query: 88  DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNY 147
             ++L+LSFN         F  S  +L+ LDL              +LS L  L L  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 148 LFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSL 207
           +  +  L   S LS L+ L   E+NLA+  +    IG L +LK L++    +        
Sbjct: 88  I-QSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 208 NHLNSSTSLETLVLSDNNLTSSIYPW---LPNISSIFISIDLGFNQLQGSIPESFQHMVY 264
              ++ T+LE L LS N + S        L  +  + +S+DL  N +    P +F+ +  
Sbjct: 145 --FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201

Query: 265 LEHLRLSFNELEGGIPK-FFGNMCSLITLNLSNNKLSG--QLSEIIQNLSSGCLENSLKS 321
           L  L L  N     + K     +  L    L   +      L +  ++   G    +++ 
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 322 LYLE-NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPH 380
             L             F+ ++N+    L +  +  +   D+   F    + L +CK G  
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 381 FPKWLQTQNQI-------------------ELLDISNTGIS--DTIPDWFWNLSNKFSFL 419
               L++  ++                   E LD+S  G+S         +  ++   +L
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYL 378

Query: 420 DLASNQIKG------KLPNLSSRFGTSNPGIDISSNHFEGLIPPLP----SNSSFLNLSK 469
           DL+ N +         L  L          +D   ++ + +          N  +L++S 
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEH--------LDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 470 NRFSGSISFLCSISGSKLTYVDLSSNLLSGKL-PDCWWTFDSLVILNLENNSFSGRIPDS 528
                + + + +   S L  + ++ N       PD +    +L  L+L         P +
Sbjct: 431 THTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 529 MGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLS 588
              L ++Q L++ +N      +  ++  + L++LD   N +       +    S+L  L+
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

Query: 589 LKSNKFHGKIPFQ--LCQLAFLQVLDLSLNNISGKIP 623
           L  N F      Q  L  +   + L + +  +    P
Sbjct: 550 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  229 bits (586), Expect = 1e-65
 Identities = 114/575 (19%), Positives = 198/575 (34%), Gaps = 52/575 (9%)

Query: 61  ILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLF 120
           +    + +D    PLR   S +     +L+ L+LS  +           SLS L  L L 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILT 84

Query: 121 GTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWF 180
           G             LS LQ L      L                      ++L N     
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNL----------------------ASLENFP--- 119

Query: 181 QVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPW---LPNI 237
             IG L +LK L++    +           ++ T+LE L LS N + S        L  +
Sbjct: 120 --IGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 238 SSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPK-FFGNMCSLITLNLSN 296
             + +S+DL  N +    P +F+ +  L  L L  N     + K     +  L    L  
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 297 NKLSG--QLSEIIQNLSSGCLENSLKSLYLE-NSLTGVISESFFSNISNLKELHLANNPL 353
            +      L +  ++   G    +++   L             F+ ++N+    L +   
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT- 293

Query: 354 VLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLS 413
            ++   D+   F    + L +CK G      L++  ++                   +L 
Sbjct: 294 -IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLP 347

Query: 414 NKFSFLDLASNQIKGKLPNLSSRFGTSNP-GIDISSNHFEGLIPPLPSNSS--FLNLSKN 470
           +   FLDL+ N +  K     S FGT++   +D+S N    +            L+   +
Sbjct: 348 S-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

Query: 471 RFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRI-PDSM 529
                  F   +S   L Y+D+S           +    SL +L +  NSF     PD  
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 530 GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSL 589
             L+N+  L L   +L     ++F + S L++L++  N  +          L++L VL  
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQVLDY 525

Query: 590 KSNKFHGKIPFQLCQLA-FLQVLDLSLNNISGKIP 623
             N        +L      L  L+L+ N+ +    
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  226 bits (578), Expect = 2e-64
 Identities = 100/575 (17%), Positives = 180/575 (31%), Gaps = 75/575 (13%)

Query: 211 NSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRL 270
           N   S + L LS N L         +   +   +DL   ++Q     ++Q + +L  L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPEL-QVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 271 SFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLT 329
           + N ++      F  + SL  L      L+   +  I +L +      LK L +  N + 
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT------LKELNVAHNLIQ 137

Query: 330 GVISESFFSNISNLKELHLANNPLVLKLSHDWVP----PFQLIIISLSSCKIGPHFPKWL 385
                 +FSN++NL+ L L++N +      D       P   + + LS   +    P   
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 386 QTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKG--KLPNLSSRFGTSNPG 443
           +    +  L + N   S  +               L   + +    L             
Sbjct: 198 KEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 444 IDISSNH------FEGLIPPLPSNSSF---LNLSKNRFSGSISFLCSISGSKLTYVDLSS 494
           + I          +   I  L +  +     +L          F          +++L +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLELVN 313

Query: 495 NLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT--GELSSS 552
                       +   L   + +          S   L +++ L L  N L+  G  S S
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 553 FRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ-LCQLAFLQVL 611
               + L+ LDL  N +      ++G  L  L  L  + +       F     L  L  L
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 612 DLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN 671
           D+S  +        FN  +++                                + L+++ 
Sbjct: 427 DISHTHTRVAFNGIFNGLSSL--------------------------------EVLKMAG 454

Query: 672 NNLNGAVPEEIM-DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSL 730
           N+       +I  +L  L  L+LS+  L          L SL  L++S N          
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 731 SQLSGLSVMDLSYNNLSGKIPTV-----TQLQSFN 760
             L+ L V+D S N++            + L   N
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  124 bits (313), Expect = 1e-29
 Identities = 60/319 (18%), Positives = 98/319 (30%), Gaps = 50/319 (15%)

Query: 445 DISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISG-SKLTYVDLSSNLLSGKLPD 503
                +F  +   LP ++  L+LS N      S+  S     +L  +DLS   +      
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDG 70

Query: 504 CWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD 563
            + +   L  L L  N        +   L ++Q L      L    +    +   L+ L+
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQV----LDLSLNNIS 619
           +  N +          +L+NL  L L SNK        L  L  + +    LDLSLN ++
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 620 GKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP 679
              P  F                                     +  L L NN  +  V 
Sbjct: 191 FIQPGAFKEIR---------------------------------LHKLTLRNNFDSLNVM 217

Query: 680 EE-IMDLVGLVALNLSKNHLTGQI---SPKIGQLKSLDFLDLSRNQL------VGGIPSS 729
           +  I  L GL    L       +          L+ L  L +   +L      +  I   
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 730 LSQLSGLSVMDLSYNNLSG 748
            + L+ +S   L    +  
Sbjct: 278 FNCLTNVSSFSLVSVTIER 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  222 bits (567), Expect = 5e-66
 Identities = 85/328 (25%), Positives = 134/328 (40%), Gaps = 44/328 (13%)

Query: 456 PPLPSNSSFLNLSKNRFSGSISFLCSISG--SKLTYVDLSSNLLSG--KLPDCWWTFDSL 511
             L S     +     + G +   C       ++  +DLS   L     +P        L
Sbjct: 22  TTLSSWLPTTDCCNRTWLGVL---CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78

Query: 512 VILNLEN-NSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALY 570
             L +   N+  G IP ++  L  +  L + +  ++G +         L  LD   NAL 
Sbjct: 79  NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 571 GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFL-QVLDLSLNNISGKIPKCFNNF 629
           G +P  +  SL NL+ ++   N+  G IP      + L   + +S N ++GKIP  F N 
Sbjct: 139 GTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLV 689
                                             +  ++LS N L G             
Sbjct: 198 N---------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 690 ALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGK 749
            ++L+KN L   +  K+G  K+L+ LDL  N++ G +P  L+QL  L  +++S+NNL G+
Sbjct: 225 KIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 750 IPTVTQLQSFNDTVYAGNPELCGLPLPN 777
           IP    LQ F+ + YA N  LCG PLP 
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  186 bits (475), Expect = 3e-53
 Identities = 91/350 (26%), Positives = 136/350 (38%), Gaps = 56/350 (16%)

Query: 10  RCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCC--KWTGLRCSNKTNHVILLDLQP 67
            C  ++++ALL  K  L + +  LSSW       DCC   W G+ C   T       +  
Sbjct: 2   LCNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQ---TYRVNN 54

Query: 68  IDFDSFPLRGT--ISPALLKLHDLRHLNLS-FNDFSGSPIPEFIGSLSKLRYLDLFGTVF 124
           +D     L     I  +L  L  L  L +   N+  G PIP  I  L++L YL +  T  
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNV 113

Query: 125 AGPIPPQLGNLSRLQHLDLGSNYLFSTGNL-DWLSHLSYLRYLNLDESNLANSSDWFQVI 183
           +G IP  L  +  L  LD   N L  +G L   +S L  L  +  D + ++ +       
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNAL--SGTLPPSISSLPNLVGITFDGNRISGA------- 164

Query: 184 GKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFIS 243
                              IP S      S    ++ +S N LT  I P   N++     
Sbjct: 165 -------------------IPDSYGSF--SKLFTSMTISRNRLTGKIPPTFANLN--LAF 201

Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL 303
           +DL  N L+G     F      + + L+ N L   + K  G   +L  L+L NN++ G L
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260

Query: 304 SEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNP 352
            + +  L        L SL +  N+L G I +    N+        ANN 
Sbjct: 261 PQGLTQLK------FLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  155 bits (395), Expect = 2e-42
 Identities = 69/260 (26%), Positives = 113/260 (43%), Gaps = 31/260 (11%)

Query: 389 NQIELLDISNTGIS--DTIPDWFWNLSNKFSFLDLAS-NQIKG-------KLPNLSSRFG 438
            ++  LD+S   +     IP    NL    +FL +   N + G       KL  L     
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHY--- 105

Query: 439 TSNPGIDISSNHFEGLIPPLPSNSS---FLNLSKNRFSGSI-SFLCSISGSKLTYVDLSS 494
                + I+  +  G IP   S       L+ S N  SG++   + S+    L  +    
Sbjct: 106 -----LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP--NLVGITFDG 158

Query: 495 NLLSGKLPDCWWTFDSLV-ILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSF 553
           N +SG +PD + +F  L   + +  N  +G+IP +   L N+  + L  N L G+ S  F
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217

Query: 554 RNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDL 613
            +    + + L KN+L  ++         NL  L L++N+ +G +P  L QL FL  L++
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 614 SLNNISGKIPK--CFNNFTA 631
           S NN+ G+IP+      F  
Sbjct: 276 SFNNLCGEIPQGGNLQRFDV 295

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (390), Expect = 1e-41
 Identities = 77/349 (22%), Positives = 119/349 (34%), Gaps = 84/349 (24%)

Query: 270 LSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQ--LSEIIQNLSSGCLENSLKSLYL--E 325
                  G +         +  L+LS   L     +   + NL        L  LY+   
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY------LNFLYIGGI 86

Query: 326 NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWL 385
           N+L G I  +    I+ L +L                                       
Sbjct: 87  NNLVGPIPPA----IAKLTQL--------------------------------------- 103

Query: 386 QTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKG-------KLPNLSSRFG 438
                   L I++T +S  IPD+   +      LD + N + G        LPNL     
Sbjct: 104 ------HYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNLVG--- 153

Query: 439 TSNPGIDISSNHFEGLIPP----LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSS 494
                I    N   G IP          + + +S+NR +G I    + +   L +VDLS 
Sbjct: 154 -----ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP--TFANLNLAFVDLSR 206

Query: 495 NLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFR 554
           N+L G     + +  +   ++L  NS +  +   +G  +N+  L L NNR+ G L     
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 555 NCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLC 603
               L  L++  N L GEIP   G +L    V +  +NK     P   C
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (377), Expect = 7e-40
 Identities = 80/342 (23%), Positives = 123/342 (35%), Gaps = 72/342 (21%)

Query: 394 LDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFG--TSNPGIDISS-NH 450
            D  N      + D         + LDL+   +    P + S          + I   N+
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYR-VNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINN 88

Query: 451 FEGLIPPLPSNSS---FLNLSKNRFSGSI-SFLCSISGSKLTYVDLSSNLLSGKLPDCWW 506
             G IPP  +  +   +L ++    SG+I  FL  I    L  +D S N LSG LP    
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK--TLVTLDFSYNALSGTLPPSIS 146

Query: 507 TFDSLVILNLENNSFSGRIPDSMGFLQN-IQTLSLHNNRLTGELSSSFRNCSQLRLLDLG 565
           +  +LV +  + N  SG IPDS G       ++++  NRLTG++  +F N + L  +DL 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205

Query: 566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKC 625
           +N L G+     G S  N   + L  N     +  ++     L  LDL  N I G +P+ 
Sbjct: 206 RNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 626 FNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDL 685
                 +                                 SL +S NNL G +P+     
Sbjct: 264 LTQLKFLH--------------------------------SLNVSFNNLCGEIPQG---- 287

Query: 686 VGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIP 727
                                G L+  D    + N+ + G P
Sbjct: 288 ---------------------GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (376), Expect = 9e-40
 Identities = 73/356 (20%), Positives = 128/356 (35%), Gaps = 82/356 (23%)

Query: 204 PLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGS--IPESFQH 261
           P +L+    +T        +      +         +  ++DL    L     IP S  +
Sbjct: 21  PTTLSSWLPTTDC-----CNRTWLGVLCDTDTQTYRV-NNLDLSGLNLPKPYPIPSSLAN 74

Query: 262 MVYLEHLRLS-FNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK 320
           + YL  L +   N L G IP     +  L  L +++  +SG + + +  + +      L 
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT------LV 128

Query: 321 SLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGP 379
           +L    N+L+G +  S  S++ NL  +    N +                          
Sbjct: 129 TLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRI-------------------------- 161

Query: 380 HFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLP----NLSS 435
                                 S  IPD + + S  F+ + ++ N++ GK+P    NL+ 
Sbjct: 162 ----------------------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199

Query: 436 RFGTSNPGIDISSNHFEGLIPPLPSNSS---FLNLSKNRFSGSISFLCSISGSKLTYVDL 492
            F      +D+S N  EG    L  +      ++L+KN  +  +  +       L  +DL
Sbjct: 200 AF------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN--LNGLDL 251

Query: 493 SSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSL-HNNRLTG 547
            +N + G LP        L  LN+  N+  G IP   G LQ     +  +N  L G
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  124 bits (315), Expect = 1e-31
 Identities = 49/209 (23%), Positives = 75/209 (35%), Gaps = 41/209 (19%)

Query: 551 SSFRNCSQLR----LLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHG--KIPFQLCQ 604
               N + L       D       G +          +  L L          IP  L  
Sbjct: 16  KDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLAN 74

Query: 605 LAFLQVLDLS-LNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL 663
           L +L  L +  +NN+ G IP      T +                               
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLH------------------------------ 104

Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723
              L +++ N++GA+P+ +  +  LV L+ S N L+G + P I  L +L  +    N++ 
Sbjct: 105 --YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 724 GGIPSSLSQLSGLS-VMDLSYNNLSGKIP 751
           G IP S    S L   M +S N L+GKIP
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  224 bits (572), Expect = 5e-62
 Identities = 94/745 (12%), Positives = 210/745 (28%), Gaps = 185/745 (24%)

Query: 21  TFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCS--NKTNHVILLDLQPIDFDSFPLRGT 78
            + +  ++ +    +W   +  ++   W        +    V  L L       F  +G 
Sbjct: 287 RYYSGTINNTIHSLNW---NFNKELDMWGDQPGVDLDNNGRVTGLSLA-----GFGAKGR 338

Query: 79  ISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRL 138
           +  A+ +L +L+ L+   +  + S        L+     +    +        L    RL
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 139 QHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCY 198
              DL  + +     +  +   S +   +    NL N         ++            
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN---------RITF---------- 439

Query: 199 LPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPES 258
               I  ++  L   T L+ +  +++  T         I+  +   +  + +   +   S
Sbjct: 440 ----ISKAIQRL---TKLQIIYFANSPFTYDN------IAVDWEDANSDYAKQYENEELS 486

Query: 259 FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLS---SGCL 315
           + ++  L  + L        +P F  ++  L +LN++ N+                    
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546

Query: 316 ENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSS 374
              ++  Y+  N+L    + +    +  L  L   +N    K+ H         + +  +
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN----KVRH---------LEAFGT 593

Query: 375 CKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLS 434
                          ++  L +    I   IP+ F   +++   L  + N++K       
Sbjct: 594 NV-------------KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY------ 633

Query: 435 SRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSS 494
                                  +P+  +  ++                   +  VD S 
Sbjct: 634 -----------------------IPNIFNAKSV-----------------YVMGSVDFSY 653

Query: 495 NLLSGKLPDCWWTFD-----SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT--- 546
           N +  +  +   + D     +   + L  N       +       I T+ L NN +T   
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 547 ----GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQL 602
                    +++N   L  +DL  N L      +   +L  L  + +  N F    P Q 
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772

Query: 603 CQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLG 662
              + L+   +                                                 
Sbjct: 773 LNSSQLKAFGIRHQ---------------------------------------------- 786

Query: 663 LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL 722
                +   N +    P  I     L+ L +  N +   +  K+     L  LD++ N  
Sbjct: 787 ----RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPN 839

Query: 723 VGGIPSSLSQLSGLSVMDLSYNNLS 747
           +    +S+       +  L Y+   
Sbjct: 840 ISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  185 bits (471), Expect = 7e-49
 Identities = 79/622 (12%), Positives = 183/622 (29%), Gaps = 92/622 (14%)

Query: 165 YLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDN 224
           +  LD  N    S          +    +           + L++      +  L L+  
Sbjct: 278 WEALDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGR---VTGLSLAGF 333

Query: 225 NLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPK-FF 283
                +   +  ++ +   +  G +    S        +  +      + +     K F 
Sbjct: 334 GAKGRVPDAIGQLTEL-KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392

Query: 284 GNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNL 343
                L   +L  + ++           S       +   L N +T +        ++ L
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA--IQRLTKL 450

Query: 344 KELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISD 403
           + ++ AN+P                  +    K   +          +  +++ N     
Sbjct: 451 QIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 404 TIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGI---------DISSNHFEGL 454
            +PD+ ++L      L++A N+       L + +                 +  N+ E  
Sbjct: 506 QLPDFLYDLPE-LQSLNIACNRGIS-AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 455 IPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVIL 514
               P+++S   + K                 L  +D   N +     + + T   L  L
Sbjct: 564 ----PASASLQKMVK-----------------LGLLDCVHNKVRH--LEAFGTNVKLTDL 600

Query: 515 NLENNSFSGRIPDSMG-FLQNIQTLSLHNNRLTG-ELSSSFRNCSQLRLLDLGKNALYGE 572
            L+ N     IP+    F   ++ L   +N+L       + ++   +  +D   N +  E
Sbjct: 601 KLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 573 IPTWMGE----SLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNN 628
                         N   ++L  N+            + +  + LS N ++  IP+    
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE---- 714

Query: 629 FTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIM--DLV 686
                  +  D   K+  +LT                 ++L  N L   + ++     L 
Sbjct: 715 ----NSLKPKDGNYKNTYLLTT----------------IDLRFNKLTS-LSDDFRATTLP 753

Query: 687 GLVALNLSKNHLTGQISPKIGQLKSLDFLDLSR------NQLVGGIPSSLSQLSGLSVMD 740
            L  +++S N  +     +      L    +        N+++   P+ ++    L  + 
Sbjct: 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

Query: 741 LSYNNLSGKIP--TVTQLQSFN 760
           +  N++  K+      QL   +
Sbjct: 813 IGSNDIR-KVDEKLTPQLYILD 833

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 3e-23
 Identities = 43/301 (14%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 81  PALLKLHDLRHLNLSFNDFSGSPIPEFIGS-LSKLRYLDLFGTVFAG-PIPPQLGNLSRL 138
            A      L  L L +N      IPE   +   ++  L          P      ++  +
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646

Query: 139 QHLDLGSNYL----FSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSL 194
             +D   N +     +               + L  + +       ++      + T+ L
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT--ELFATGSPISTIIL 704

Query: 195 HSCYLPPVIPLSLNHLNSS----TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQ 250
            +  +  +   SL   + +      L T+ L  N LTS    +         ++D+ +N 
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 251 LQGSIPESFQHMVYLEHLRLSF------NELEGGIPKFFGNMCSLITLNLSNNKLSGQLS 304
              S P    +   L+   +        N +    P       SLI L + +N     + 
Sbjct: 765 FS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN----DIR 819

Query: 305 EIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNI-SNLKELHLANNPLVLKLSHDWV 362
           ++ + L+       L  L + +N    +   S    I + +  L       +       +
Sbjct: 820 KVDEKLTP-----QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874

Query: 363 P 363
            
Sbjct: 875 E 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 14/114 (12%), Positives = 37/114 (32%), Gaps = 1/114 (0%)

Query: 651 KGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLK 710
               ++Y++   + ++L+  N           +  +     N   +    Q    +    
Sbjct: 265 AEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNNG 323

Query: 711 SLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVY 764
            +  L L+     G +P ++ QL+ L V+    ++ +         +   D   
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  218 bits (558), Expect = 9e-62
 Identities = 117/632 (18%), Positives = 212/632 (33%), Gaps = 108/632 (17%)

Query: 128 IPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLH 187
           IP  L   +  + L+   N L +  N    S L  L +L+L    +    +        H
Sbjct: 27  IPGTL--PNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHE--DTFQSQH 81

Query: 188 SLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLG 247
            L TL L +  L  +   +L+      +L+ L      ++S  +  L N  ++  S+ LG
Sbjct: 82  RLDTLVLTANPLIFMAETALSGP---KALKHLFFIQTGISSIDFIPLHNQKTL-ESLYLG 137

Query: 248 FNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSL--ITLNLSNNKLSGQLSE 305
            N +             L+ L    N +     +   ++     ++LNL+ N ++G    
Sbjct: 138 SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG---- 193

Query: 306 IIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF 365
            I+  +         +     +L  +      S I +L      +               
Sbjct: 194 -IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE----------- 241

Query: 366 QLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQ 425
                      I P   + L  +  +E +++      +   + F   S     LDL +  
Sbjct: 242 ----------DISPAVFEGL-CEMSVESINLQKHYFFNISSNTFHCFSG-LQELDLTATH 289

Query: 426 IK------GKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFL 479
           +         L  L          + +S+N FE L        S  N             
Sbjct: 290 LSELPSGLVGLSTLKK--------LVLSANKFENLCQ-----ISASNFPS---------- 326

Query: 480 CSISGSKLTYVDLSSNLLSGKL-PDCWWTFDSLVILNLENN--SFSGRIPDSMGFLQNIQ 536
                  LT++ +  N    +L   C    ++L  L+L ++    S      +  L ++Q
Sbjct: 327 -------LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 537 TLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHG 596
           +L+L  N      + +F+ C QL LLDL    L  +      ++L  L VL+L  +    
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 597 KIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSERE 656
                   L  LQ L+L  N+      +  N+   + +                      
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR---------------------- 477

Query: 657 YRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLD 716
                  ++ L LS  +L+         L  +  ++LS N LT      +  LK + +L+
Sbjct: 478 -------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529

Query: 717 LSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG 748
           L+ N +   +PS L  LS    ++L  N L  
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (540), Expect = 3e-59
 Identities = 104/553 (18%), Positives = 186/553 (33%), Gaps = 68/553 (12%)

Query: 217 ETLVLSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNEL 275
           +T    +  L       +P  + +    ++  FN L      +F  ++ L  L L+  ++
Sbjct: 15  KTYNCENLGLNE-----IPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 276 EGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISE 334
                  F +   L TL L+ N L       +    +      LK L+  +  ++  I  
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA------LKHLFFIQTGISS-IDF 122

Query: 335 SFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELL 394
               N   L+ L+L +N +             + +      +             ++++L
Sbjct: 123 IPLHNQKTLESLYLGSNHIS-----------SIKLPKGFPTE-------------KLKVL 158

Query: 395 DISNTGISDTIPDWFWNLSN-KFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEG 453
           D  N  I     +   +L       L+L  N I G  P            ++        
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQNLL 216

Query: 454 LIPPLPSNSSFLNLSKNRFSG------SISFLCSISGSKLTYVDLSSNLLSGKLPDCWWT 507
           +I     NS+  +L    F        S +    +    +  ++L  +       + +  
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
           F  L  L+L     S  +P  +  L  ++ L L  N+       S  N   L  L +  N
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFH--GKIPFQLCQLAFLQVLDLSLNNISGKIPKC 625
               E+ T   E+L NL  L L  +          QL  L+ LQ L+LS N       + 
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 626 FNNFTAMTQERSSDPTIKDKLMLTW-KGSEREYRSTLGLVKSLE---LSNNNLNGAVPEE 681
           F     +             L L + +   ++ +S    +  L+   LS++ L+ +  + 
Sbjct: 396 FKECPQLE-----------LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 682 IMDLVGLVALNLSKNHLTGQISPKIG---QLKSLDFLDLSRNQLVGGIPSSLSQLSGLSV 738
              L  L  LNL  NH       K      L  L+ L LS   L      + + L  ++ 
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 739 MDLSYNNLSGKIP 751
           +DLS+N L+    
Sbjct: 505 VDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  209 bits (535), Expect = 1e-58
 Identities = 105/547 (19%), Positives = 184/547 (33%), Gaps = 29/547 (5%)

Query: 86  LHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGS 145
            +    L  SFN         F   L  L +LDL              +  RL  L L +
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF-SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 146 NYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPL 205
           N L        LS    L++L   ++ +++       +    +L++L L S ++  +   
Sbjct: 91  NPL-IFMAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLP 147

Query: 206 SLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI-FISIDLGFNQLQGSIPESFQHMVY 264
                     L+ L   +N +       + ++     +S++L  N +   I         
Sbjct: 148 KGFPT---EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAV 203

Query: 265 LEHLRLSFNELEGGIPK--FFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSL 322
            + L     +    I K      + SL      +        +I   +  G  E S++S+
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM----DDEDISPAVFEGLCEMSVESI 259

Query: 323 YLE-NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHF 381
            L+ +    + S + F   S L+EL L    L  +L    V    L  + LS+ K     
Sbjct: 260 NLQKHYFFNISSNT-FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 382 PKWLQTQNQIELLDIS-NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTS 440
                    +  L I  NT   +       NL N    LDL+ + I+            S
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLEN-LRELDLSHDDIETSDCCNLQLRNLS 376

Query: 441 N-PGIDISSNHFEGLIPPLPSNSS---FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNL 496
           +   +++S N    L             L+L+  R     +     +   L  ++LS +L
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 497 LSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQN---IQTLSLHNNRLTGELSSSF 553
           L       +    +L  LNL+ N F          LQ    ++ L L    L+     +F
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 554 RNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDL 613
            +   +  +DL  N L           L  +  L+L SN     +P  L  L+  + ++L
Sbjct: 497 TSLKMMNHVDLSHNRLTS-SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554

Query: 614 SLNNISG 620
             N +  
Sbjct: 555 RQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  199 bits (508), Expect = 6e-55
 Identities = 111/581 (19%), Positives = 198/581 (34%), Gaps = 71/581 (12%)

Query: 205 LSLNHLNS-----STSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESF 259
                LN        S E L  S N L +        + ++   +DL   Q+     ++F
Sbjct: 19  CENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINL-TFLDLTRCQIYWIHEDTF 77

Query: 260 QHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSL 319
           Q    L+ L L+ N L            +L  L      +S      + N  +      L
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT------L 131

Query: 320 KSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF---QLIIISLSSC 375
           +SLYL  N ++ +           LK L   NN +   LS + +        + ++L+  
Sbjct: 132 ESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGN 189

Query: 376 KIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLS-NKFSFLDLASNQIKGKLPNLS 434
            I              + L+   T     I     N +              +   P + 
Sbjct: 190 DIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 435 SRFGTSN-PGIDISSNHFEGLIPPLPSNSS---FLNLSKNRFSGSISFLCSISGSKLTYV 490
                 +   I++  ++F  +        S    L+L+    S   S L  +S   L  +
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLS--TLKKL 306

Query: 491 DLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSM-GFLQNIQTLSLHNNRLT--G 547
            LS+N            F SL  L+++ N+    +       L+N++ L L ++ +    
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366

Query: 548 ELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPF-QLCQLA 606
             +   RN S L+ L+L  N     + T   +    L +L L   +   K        L 
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 607 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKS 666
            L+VL+LS + +     + F+   A+                                + 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPAL--------------------------------QH 453

Query: 667 LELSNNNL---NGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723
           L L  N+    N      +  L  L  L LS   L+         LK ++ +DLS N+L 
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTV----TQLQSFN 760
                +LS L G+  ++L+ N++S  +P++    +Q ++ N
Sbjct: 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  195 bits (497), Expect = 2e-53
 Identities = 97/575 (16%), Positives = 178/575 (30%), Gaps = 91/575 (15%)

Query: 75  LRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGN 134
           +           H L  L L+ N          +     L++L    T  +      L N
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 135 LSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLAN-SSDWFQVIGKLH------ 187
              L+ L LGSN++ S+  L        L+ L+   + +   S +    + +        
Sbjct: 128 QKTLESLYLGSNHI-SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 188 ----------------SLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIY 231
                             ++L+        VI   L + ++  SL      D +      
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN-STIQSLWLGTFEDMDDEDISP 245

Query: 232 PWLPNISSIFI-SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLI 290
                +  + + SI+L  +        +F     L+ L L+   L   +P     + +L 
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304

Query: 291 TLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLA 349
            L LS NK          N        SL  L +  N+    +      N+ NL+EL L+
Sbjct: 305 KLVLSANKFENLCQISASNFP------SLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 350 NNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWF 409
           ++ +                      +        L+  + ++ L++S         + F
Sbjct: 359 HDDI----------------------ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 410 WNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSK 469
                    LDLA  ++K K                   + F+ L          LNLS 
Sbjct: 397 KECPQ-LELLDLAFTRLKVKDAQ----------------SPFQNL-----HLLKVLNLSH 434

Query: 470 NRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTF---DSLVILNLENNSFSGRIP 526
           +    S   L       L +++L  N           +      L IL L     S    
Sbjct: 435 SLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

Query: 527 DSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIV 586
            +   L+ +  + L +NRLT     +  +   +  L+L  N +   +P+ +   LS    
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP-ILSQQRT 551

Query: 587 LSLKSNKFHGKIPFQLCQLA-FLQVLDLSLNNISG 620
           ++L+ N          C    FL+    ++  +  
Sbjct: 552 INLRQNPLDC-----TCSNIYFLEWYKENMQKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  142 bits (360), Expect = 1e-35
 Identities = 88/430 (20%), Positives = 163/430 (37%), Gaps = 31/430 (7%)

Query: 62  LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG 121
              L+ +DF +  +       +  L    +L+L+ N    + I       +  + L+  G
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 122 TVFAGPIPPQLGN--LSRLQHLDLGSNYL--FSTGNLDWLSHLSYLRYLNLDESNLANSS 177
           T     I   L N  +  L             S    + L  +S +  +NL +    N S
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNIS 270

Query: 178 DWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNI 237
                      L+ L L + +L   +P  L  L   ++L+ LVLS N   +       N 
Sbjct: 271 S--NTFHCFSGLQELDLTATHL-SELPSGLVGL---STLKKLVLSANKFENLCQISASNF 324

Query: 238 SSIFISIDLGFNQLQGSI-PESFQHMVYLEHLRLSFNELE--GGIPKFFGNMCSLITLNL 294
            S+   + +  N  +  +     +++  L  L LS +++E          N+  L +LNL
Sbjct: 325 PSL-THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 295 SNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPL 353
           S N+     +E  +          L+ L L    L    ++S F N+  LK L+L+++ L
Sbjct: 384 SYNEPLSLKTEAFKECP------QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 354 VLKLSHDWVPPFQLIIISLSSCKI---GPHFPKWLQTQNQIELLDISNTGISDTIPDWFW 410
            +     +     L  ++L               LQT  ++E+L +S   +S      F 
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 411 NLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIP---PLPSNSSFLNL 467
           +L    + +DL+ N++        S        ++++SNH   ++P   P+ S    +NL
Sbjct: 498 SLKM-MNHVDLSHNRLTSSSIEALS--HLKGIYLNLASNHISIILPSLLPILSQQRTINL 554

Query: 468 SKNRFSGSIS 477
            +N    + S
Sbjct: 555 RQNPLDCTCS 564

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  137 bits (348), Expect = 4e-34
 Identities = 72/348 (20%), Positives = 119/348 (34%), Gaps = 25/348 (7%)

Query: 62  LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG 121
            + ++ I+          S        L+ L+L+    S   +P  +  LS L+ L L  
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSA 310

Query: 122 TVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQ 181
             F         N   L HL +  N          L +L  LR L+L   ++  S     
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 182 VIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIF 241
            +  L  L++L+L       +   +         LE L L+   L             + 
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKEC---PQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 242 ISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGI---PKFFGNMCSLITLNLSNNK 298
             ++L  + L  S  + F  +  L+HL L  N    G          +  L  L LS   
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 299 LSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKL 357
           LS        +L        +  + L  N LT   S    S++  +  L+LA+N + + L
Sbjct: 488 LSSIDQHAFTSLK------MMNHVDLSHNRLTS-SSIEALSHLKGI-YLNLASNHISIIL 539

Query: 358 SHDWVPPFQLIIISLS------SCKIGPHFPKWLQTQNQIELLDISNT 399
                   Q   I+L       +C     F +W + +N  +L D  +T
Sbjct: 540 PSLLPILSQQRTINLRQNPLDCTCSNIY-FLEWYK-ENMQKLEDTEDT 585

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.9 bits (208), Expect = 8e-17
 Identities = 39/257 (15%), Positives = 69/257 (26%), Gaps = 62/257 (24%)

Query: 513 ILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGE 572
             N EN   +  IP       + + L    N L    +++F     L  LDL        
Sbjct: 16  TYNCENLGLN-EIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT------- 65

Query: 573 IPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM 632
                               + +            L  L L+ N +        +   A+
Sbjct: 66  ------------------RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107

Query: 633 TQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALN 692
                                           K L      ++      + +   L +L 
Sbjct: 108 --------------------------------KHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 693 LSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVM--DLSYNNLSGKI 750
           L  NH++    PK    + L  LD   N +       +S L   + +  +L+ N+++G  
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 751 PTVTQLQSFNDTVYAGN 767
           P       F    + G 
Sbjct: 196 PGAFDSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.2 bits (188), Expect = 2e-14
 Identities = 32/202 (15%), Positives = 55/202 (27%), Gaps = 39/202 (19%)

Query: 550 SSSFRNCSQL---RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLA 606
           +SS + C +    +  +     L  EIP   G   ++   L    N           +L 
Sbjct: 2   TSSDQKCIEKEVNKTYNCENLGLN-EIP---GTLPNSTECLEFSFNVLPTIQNTTFSRLI 57

Query: 607 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKS 666
            L  LDL+   I       F +                                   + +
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQS--------------------------------QHRLDT 85

Query: 667 LELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGI 726
           L L+ N L       +     L  L   +  ++      +   K+L+ L L  N +    
Sbjct: 86  LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 727 PSSLSQLSGLSVMDLSYNNLSG 748
                    L V+D   N +  
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHY 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  205 bits (523), Expect = 5e-57
 Identities = 118/626 (18%), Positives = 204/626 (32%), Gaps = 99/626 (15%)

Query: 128 IPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLH 187
           +P  +   S  +++DL  N L    +    S+ S L++L+L    +    D  +    LH
Sbjct: 26  VPDDIP--SSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIED--KAWHGLH 80

Query: 188 SLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLG 247
            L  L L    +    P S + L   TSLE LV  +  L S     +  + ++   +++ 
Sbjct: 81  HLSNLILTGNPIQSFSPGSFSGL---TSLENLVAVETKLASLESFPIGQLITL-KKLNVA 136

Query: 248 FNQLQG-SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMC----SLITLNLSNNKLSGQ 302
            N +    +P  F ++  L H+ LS+N ++         +       ++L++S N +   
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196

Query: 303 LSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDW 361
             +  Q +        L  L L  N  +  I ++   N++ L    L             
Sbjct: 197 QDQAFQGIK-------LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF-------- 241

Query: 362 VPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDL 421
                   + +    I             I+   ++ T         F  L+N  S + L
Sbjct: 242 ---KDERNLEIFEPSIMEGLC-----DVTIDEFRLTYTNDFSDDIVKFHCLAN-VSAMSL 292

Query: 422 ASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCS 481
           A   IK  L ++          + I     +            L L+ N+ S S   +  
Sbjct: 293 AGVSIK-YLEDVP--KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL 349

Query: 482 ISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLH 541
                L+Y+DLS N LS                     S+S           +++ L L 
Sbjct: 350 ---PSLSYLDLSRNALS----------------FSGCCSYSD------LGTNSLRHLDLS 384

Query: 542 NNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ 601
            N     +S++F    +L+ LD   + L          SL  L+ L +            
Sbjct: 385 FNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 602 LCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTL 661
              L  L  L ++ N+           F   T                            
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNV--FANTTN--------------------------- 474

Query: 662 GLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQ 721
             +  L+LS   L          L  L  LN+S N+L    S    QL SL  LD S N+
Sbjct: 475 --LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532

Query: 722 LVGGIPSSLSQLSGLSVMDLSYNNLS 747
           +             L+  +L+ N+++
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  196 bits (501), Expect = 5e-54
 Identities = 109/570 (19%), Positives = 183/570 (32%), Gaps = 67/570 (11%)

Query: 211 NSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRL 270
           +  +S + + LS N L         N S +   +DL   +++    +++  + +L +L L
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSEL-QWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 271 SFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLT 329
           + N ++   P  F  + SL  L     KL+   S  I  L +      LK L +  N + 
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT------LKKLNVAHNFIH 141

Query: 330 GVISESFFSNISNLKELHLANNPLV----LKLSHDWVPPFQLIIISLSSCKIGPHFPKWL 385
                ++FSN++NL  + L+ N +       L      P   + + +S   I        
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQA 200

Query: 386 QTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKG-----KLPNLSSRFGTS 440
               ++  L +     S  I               L   + K                  
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 441 NPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSG-SISFLCSISG-SKLTYVDLSSNLLS 498
               +    +       +       N+S    +G SI +L  +    K   + +    L 
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK 320

Query: 499 GKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRN--C 556
              P        L  L L  N  S  I      L ++  L L  N L+     S+ +   
Sbjct: 321 Q-FPT--LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 557 SQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ-LCQLAFLQVLDLSL 615
           + LR LDL  N        +MG  L  L  L  + +       F     L  L  LD+S 
Sbjct: 376 NSLRHLDLSFNGAIIMSANFMG--LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 616 NNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN 675
            N        F   T++                                 +L+++ N+  
Sbjct: 434 TNTKIDFDGIFLGLTSL--------------------------------NTLKMAGNSFK 461

Query: 676 GAVPEEIM-DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLS 734
                 +  +   L  L+LSK  L          L  L  L++S N L+    S  +QL 
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 735 GLSVMDLSYNNLSGKIPTV----TQLQSFN 760
            LS +D S+N +      +      L  FN
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  196 bits (500), Expect = 7e-54
 Identities = 102/555 (18%), Positives = 192/555 (34%), Gaps = 50/555 (9%)

Query: 75  LRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGN 134
           L+   S +     +L+ L+LS  +       +    L  L  L L G       P     
Sbjct: 44  LKILKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102

Query: 135 LSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSL 194
           L+ L++L      L                      ++L +       IG+L +LK L++
Sbjct: 103 LTSLENLVAVETKL----------------------ASLESFP-----IGQLITLKKLNV 135

Query: 195 HSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYP---WLPNISSIFISIDLGFNQL 251
              ++      +    ++ T+L  + LS N + +       +L     + +S+D+  N +
Sbjct: 136 AHNFIHSCKLPAY--FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

Query: 252 QGSIPESFQHMVYLEHLRLSFNELEGGIPK-FFGNMCSLITLNLSNNKLSG--QLSEIIQ 308
                ++FQ +  L  L L  N     I K    N+  L    L   +      L     
Sbjct: 194 DFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 309 NLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLI 368
           ++  G  + ++    L  +         F  ++N+  + LA     +K   D    F+  
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS--IKYLEDVPKHFKWQ 310

Query: 369 IISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKG 428
            +S+  C++       L     ++ L ++    S  I      L +  S+LDL+ N +  
Sbjct: 311 SLSIIRCQLKQFPTLDL---PFLKSLTLTMNKGS--ISFKKVALPS-LSYLDLSRNALSF 364

Query: 429 KLPNLSSRFGTSN-PGIDISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISGS 485
                 S  GT++   +D+S N    +            L+   +       F   +S  
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSM-GFLQNIQTLSLHNNR 544
           KL Y+D+S           +    SL  L +  NSF      ++     N+  L L   +
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ 604
           L       F    +L+LL++  N L   + +     L +L  L    N+           
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 605 LAFLQVLDLSLNNIS 619
              L   +L+ N+++
Sbjct: 544 PKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  192 bits (491), Expect = 1e-52
 Identities = 115/666 (17%), Positives = 224/666 (33%), Gaps = 109/666 (16%)

Query: 88  DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNY 147
             ++++LSFN         F  + S+L++LDL               L  L +L L  N 
Sbjct: 33  STKNIDLSFNPLKILKSYSF-SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 148 LFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSL 207
           +  + +    S L+ L  L   E+ LA+       IG+L +LK L++   ++      + 
Sbjct: 92  I-QSFSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 208 NHLNSSTSLETLVLSDNNLTSSIYP---WLPNISSIFISIDLGFNQLQGSIPESFQHMVY 264
              ++ T+L  + LS N + +       +L     + +S+D+  N +     ++FQ +  
Sbjct: 149 --FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-K 205

Query: 265 LEHLRLSFNELEGGIPK-FFGNMCSLITLNLSNNKLSG--QLSEIIQNLSSGCLENSLKS 321
           L  L L  N     I K    N+  L    L   +      L     ++  G  + ++  
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 322 LYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHF 381
             L  +         F  ++N+  + LA   +  K   D    F+   +S+  C++    
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQL---- 319

Query: 382 PKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSN 441
                   Q   LD+                      L L  N+                
Sbjct: 320 -------KQFPTLDLPF-----------------LKSLTLTMNKGS-------------- 341

Query: 442 PGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISG-SKLTYVDLSSNLLSGK 500
                 S     L      + S+L+LS+N  S S     S  G + L ++DLS N     
Sbjct: 342 -----ISFKKVAL-----PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII- 390

Query: 501 LPDCWWTFDSLVILNLENNSFSGRIPDSM-GFLQNIQTLSLHNNRLTGELSSSFRNCSQL 559
           +   +   + L  L+ ++++       S    L+ +  L +       +    F   + L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS 619
             L +  N+      + +  + +NL  L L   +           L  LQ+L++S NN+ 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 620 GKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP 679
                 +N   +                                + +L+ S N +  +  
Sbjct: 511 FLDSSHYNQLYS--------------------------------LSTLDCSFNRIETSKG 538

Query: 680 EEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGG---IPSSLSQLSGL 736
                   L   NL+ N +      +  +   L ++   +  LV       ++  +++  
Sbjct: 539 ILQHFPKSLAFFNLTNNSVAC--ICEHQKF--LQWVKEQKQFLVNVEQMTCATPVEMNTS 594

Query: 737 SVMDLS 742
            V+D +
Sbjct: 595 LVLDFN 600

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  191 bits (488), Expect = 3e-52
 Identities = 104/571 (18%), Positives = 185/571 (32%), Gaps = 80/571 (14%)

Query: 204 PLSLNHLNSSTSLETLVLSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHM 262
           P SLN         T    D  L+      +P +I S   +IDL FN L+     SF + 
Sbjct: 1   PGSLNPCIEVVPNITYQCMDQKLSK-----VPDDIPSSTKNIDLSFNPLKILKSYSFSNF 55

Query: 263 VYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSL 322
             L+ L LS  E+E    K +  +  L  L L+ N +          L+      SL++L
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT------SLENL 109

Query: 323 YL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF-----QLIIISLSSCK 376
              E  L  + S      +  LK+L++A+N     +    +P +      L+ + LS   
Sbjct: 110 VAVETKLASLESFP-IGQLITLKKLNVAHN----FIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 377 I----GPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPN 432
           I            +       LD+S   I       F  +      L L  N     +  
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK--LHELTLRGNFNSSNIMK 222

Query: 433 LSSRFGTSNPGIDISSNHFEGL----IPPLPSNSSFLNLSKNRFSGSISFLCSISG---- 484
              +         +    F+      I          +++ + F  + +   S       
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 485 --SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHN 542
             + ++ + L+   +     +          L++               L  +++L+L  
Sbjct: 283 CLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTM 337

Query: 543 NRLTGELSSSFRNCSQLRLLDLGKNALYGEIP-TWMGESLSNLIVLSLKSNKFHGKIPFQ 601
           N+ +  +S        L  LDL +NAL      ++     ++L  L L  N     +   
Sbjct: 338 NKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN 394

Query: 602 LCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTL 661
              L  LQ LD   + +       F+ F ++ +                           
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTE--FSAFLSLEK--------------------------- 425

Query: 662 GLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRN 720
             +  L++S  N         + L  L  L ++ N         +     +L FLDLS+ 
Sbjct: 426 --LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 721 QLVGGIPSSLSQLSGLSVMDLSYNNLSGKIP 751
           QL          L  L ++++S+NNL     
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  117 bits (294), Expect = 2e-27
 Identities = 54/336 (16%), Positives = 107/336 (31%), Gaps = 29/336 (8%)

Query: 63  LDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGT 122
           + +                    L ++  ++L+                 K + L +   
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK---HFKWQSLSIIRC 317

Query: 123 VFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQV 182
                 P    +L  L+ L L  N    +        L  L YL+L  + L+ S      
Sbjct: 318 QLKQ-FPTL--DLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 183 IGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI 242
               +SL+ L L       ++  +   L     L+ L    + L               +
Sbjct: 372 DLGTNSLRHLDLSFNGA-IIMSANFMGL---EELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPK-FFGNMCSLITLNLSNNKLSG 301
            +D+ +   +      F  +  L  L+++ N  +       F N  +L  L+LS  +L  
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 302 QLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHD 360
               +   L        L+ L +  N+L   +  S ++ + +L  L  + N +       
Sbjct: 488 ISWGVFDTLH------RLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 361 WVPPFQLIIISLSS------CKIGPHFPKWLQTQNQ 390
              P  L   +L++      C+    F +W++ Q Q
Sbjct: 541 QHFPKSLAFFNLTNNSVACICEHQK-FLQWVKEQKQ 575

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 3/135 (2%)

Query: 62  LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG 121
           L  L  +D      +       L L  L  L ++ N F  + +     + + L +LDL  
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 122 TVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQ 181
                        L RLQ L++  N L    +    + L  L  L+   + +  S    Q
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 182 VIGKLHSLKTLSLHS 196
                 SL   +L +
Sbjct: 542 --HFPKSLAFFNLTN 554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  180 bits (457), Expect = 4e-47
 Identities = 145/744 (19%), Positives = 256/744 (34%), Gaps = 128/744 (17%)

Query: 87  HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSN 146
            D R     F + +   +P+    L+    L L               L +LQ L+LGS 
Sbjct: 4   FDGRIAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 147 YLFSTGNLDWLSHLSYLRYLNLDESNLAN-SSDWFQVIGKLHSLKTLSLHSCYLPPVIPL 205
           Y   T + +   +L  LR L+L  S +     D FQ    L  L  L L+ C L   + L
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ---GLFHLFELRLYFCGLSDAV-L 114

Query: 206 SLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYL 265
              +  +  +L  L LS N + S                          +  SF  +  L
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRS------------------------LYLHPSFGKLNSL 150

Query: 266 EHLRLSFNELEGGIPKFFGN--MCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLY 323
           + +  S N++              +L   +L+ N L  ++S       +      L+ L 
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 324 L-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFP 382
           +  N  T  I+ +F + IS  +   L                  ++        I     
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAH-------------HIMGAGFGFHNIKDPDQ 257

Query: 383 KWLQ--TQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTS 440
                  ++ +  LD+S+  +       F  L +    L+LA N+I              
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD-LKVLNLAYNKIN------------- 303

Query: 441 NPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGK 500
                I+   F GL      N   LNLS N     +         K+ Y+DL  N ++  
Sbjct: 304 ----KIADEAFYGL-----DNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 501 LPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLR 560
               +   + L  L+L +N+ +     ++ F+ +I  + L  N+L     +  +      
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV----TLPKINLTAN 404

Query: 561 LLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ-LAFLQVLDLSLNNIS 619
           L+ L +N L      +    + +L +L L  N+F      Q       L+ L L  N + 
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 620 GKIPKCF--NNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGA 677
                    + F  ++                              ++ L L++N LN  
Sbjct: 465 LAWETELCWDVFEGLSH-----------------------------LQVLYLNHNYLNSL 495

Query: 678 VPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLS 737
            P     L  L  L+L+ N LT           +L+ LD+SRNQL+   P        LS
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTV--LSHNDLPANLEILDISRNQLLAPNPDVFVS---LS 550

Query: 738 VMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITEGRDDA 797
           V+D+++N    +     +L +F + +   N  + G P    C   +S +G  +       
Sbjct: 551 VLDITHNKFICEC----ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFS--LST 604

Query: 798 DTSEDEDQFITLGFYVSLILGFIV 821
           +  ++E+   +L F + ++    +
Sbjct: 605 EGCDEEEVLKSLKFSLFIVCTVTL 628

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  176 bits (449), Expect = 3e-46
 Identities = 112/545 (20%), Positives = 188/545 (34%), Gaps = 34/545 (6%)

Query: 82  ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL 141
           +   L  L+ L L       +   E   +L  LR LDL  +      P     L  L  L
Sbjct: 43  SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102

Query: 142 DLGSNYLFSTG-NLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLP 200
            L    L        +  +L  L  L+L   N   S       GKL+SLK++   S  + 
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLS-KNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQ 260
            V    L  L    +L    L+ N+L S +        + F ++ L    + G+      
Sbjct: 162 LVCEHELEPL-QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN------ 214

Query: 261 HMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK 320
               ++      N +             ++      +     + +  QN  +G   +S++
Sbjct: 215 -GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH----NIKDPDQNTFAGLARSSVR 269

Query: 321 SLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPH 380
            L L +     ++   F  + +LK L+LA N +       +     L +++LS   +G  
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

Query: 381 FPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTS 440
           +        ++  +D+    I+      F  L      LDL  N +       +  F  S
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK-LQTLDLRDNALT------TIHFIPS 382

Query: 441 NPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGK 500
            P I +S N    L P +   ++ ++LS+NR          +    L  + L+ N  S  
Sbjct: 383 IPDIFLSGNKLVTL-PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

Query: 501 LPDC-WWTFDSLVILNLENNSFSGRI-----PDSMGFLQNIQTLSLHNNRLTGELSSSFR 554
             D       SL  L L  N            D    L ++Q L L++N L       F 
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501

Query: 555 NCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLS 614
           + + LR L L  N L   +        +NL +L +  N+              L VLD++
Sbjct: 502 HLTALRGLSLNSNRL-TVLSHND--LPANLEILDISRNQLLA---PNPDVFVSLSVLDIT 555

Query: 615 LNNIS 619
            N   
Sbjct: 556 HNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  154 bits (390), Expect = 9e-39
 Identities = 96/554 (17%), Positives = 189/554 (34%), Gaps = 63/554 (11%)

Query: 82  ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLS--RLQ 139
               L  L  L+LS N      +    G L+ L+ +D            +L  L    L 
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 140 HLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYL 199
              L +N L+S  ++DW   ++  R + L+  +++ +     + G   +  +        
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK------- 230

Query: 200 PPVIPLSLNHLNSSTSLETLVLSDNNLTS-SIYPWLPNISSIFISIDLGFNQLQGSIPES 258
                     L  +  +       +N+       +     S    +DL    +       
Sbjct: 231 -----SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285

Query: 259 FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENS 318
           F+ +  L+ L L++N++     + F  + +L  LNLS N L    S     L        
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP------K 339

Query: 319 LKSLYLENSLTGVISESFFSNISNLKELHLANNPLV---------------LKLSHDWVP 363
           +  + L+ +   +I +  F  +  L+ L L +N L                 KL      
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI 399

Query: 364 PFQLIIISLSSCKI-GPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLA 422
                +I LS  ++       +L     +++L ++    S    D   + +     L L 
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 423 SNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSI 482
            N ++                 ++  + FEGL     S+   L L+ N  + S+      
Sbjct: 460 ENMLQ------------LAWETELCWDVFEGL-----SHLQVLYLNHNYLN-SLPPGVFS 501

Query: 483 SGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHN 542
             + L  + L+SN L+  L        +L IL++  N      PD      ++  L + +
Sbjct: 502 HLTALRGLSLNSNRLT-VLSHNDL-PANLEILDISRNQLLAPNPD---VFVSLSVLDITH 556

Query: 543 NRLTGELS-SSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ 601
           N+   E   S+F N      + +       +I     +S S + + SL +     +   +
Sbjct: 557 NKFICECELSTFINWLNHTNVTIAGPP--ADIYCVYPDSFSGVSLFSLSTEGCDEEEVLK 614

Query: 602 LCQLAFLQVLDLSL 615
             + +   V  ++L
Sbjct: 615 SLKFSLFIVCTVTL 628

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  159 bits (404), Expect = 2e-41
 Identities = 99/545 (18%), Positives = 185/545 (33%), Gaps = 50/545 (9%)

Query: 213 STSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSF 272
             S + L LS N L         +   +   +DL   ++Q     ++Q + +L  L L+ 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPEL-QVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 273 NELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGV 331
           N ++      F  + SL  L      L+   +  I +L +      LK L +  N +   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT------LKELNVAHNLIQSF 139

Query: 332 ISESFFSNISNLKELHLANNPLVLKLSHDWVP----PFQLIIISLSSCKIGPHFPKWLQT 387
               +FSN++NL+ L L++N +      D       P   + + LS   +          
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

Query: 388 QNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDIS 447
           + ++  L + N   S  +         K     LA  ++      +   F          
Sbjct: 199 EIRLHKLTLRNNFDSLNVM--------KTCIQGLAGLEV---HRLVLGEFRNEGNLEKFD 247

Query: 448 SNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWT 507
            +  EGL            L+   +            + ++   L S  +       +  
Sbjct: 248 KSALEGLCN---LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 508 F-DSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGK 566
               L ++N +   F          L++++ L+  +N+     + S  +   L  LDL +
Sbjct: 305 GWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSR 356

Query: 567 NALYG-EIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKC 625
           N L      +      ++L  L L  N     +      L  L+ LD   +N+       
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 626 -FNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD 684
            F +   +     S    +      + G        L  ++ L+++ N+       +I  
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFT 467

Query: 685 -LVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS 742
            L  L  L+LS+  L  Q+SP     L SL  L+++ NQL         +L+ L  + L 
Sbjct: 468 ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

Query: 743 YNNLS 747
            N   
Sbjct: 527 TNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  158 bits (401), Expect = 4e-41
 Identities = 110/553 (19%), Positives = 196/553 (35%), Gaps = 73/553 (13%)

Query: 88  DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNY 147
             ++L+LSFN         F  S  +L+ LDL              +LS L  L L  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 148 LFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSL 207
           +  +  L   S LS L+ L   E+NLA+  +    IG L +LK L++    +        
Sbjct: 88  I-QSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 208 NHLNSSTSLETLVLSDNNLTS---SIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVY 264
              ++ T+LE L LS N + S   +    L  +  + +S+DL  N +    P +F+ +  
Sbjct: 145 --FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201

Query: 265 LEHLRLSFNELEGGIPK-FFGNMCSLITLNLSNNKL--SGQLSEIIQNLSSGCLENSLKS 321
           L  L L  N     + K     +  L    L   +    G L +  ++   G    +++ 
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 322 LYLE-NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPH 380
             L             F+ ++N+    L +                    ++   K   +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-------------------TIERVKDFSY 302

Query: 381 FPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTS 440
              W      +EL++                L +    L   SN+               
Sbjct: 303 NFGW----QHLELVNCKFGQFP------TLKLKS-LKRLTFTSNKGG------------- 338

Query: 441 NPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISG-SKLTYVDLSSNLLSG 499
                 ++     L      +  FL+LS+N  S       S  G + L Y+DLS N +  
Sbjct: 339 ------NAFSEVDL-----PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 386

Query: 500 KLPDCWWTFDSLVILNLENNSFSGRIPDSMGF--LQNIQTLSLHNNRLTGELSSSFRNCS 557
            +   +   + L  L+ ++++   ++ +   F  L+N+  L + +       +  F   S
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 558 QLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNN 617
            L +L +  N+        +   L NL  L L   +     P     L+ LQVL+++ N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 618 ISGKIPKCFNNFT 630
           +       F+  T
Sbjct: 506 LKSVPDGIFDRLT 518

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (360), Expect = 9e-36
 Identities = 103/545 (18%), Positives = 178/545 (32%), Gaps = 110/545 (20%)

Query: 221 LSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGI 279
             + N        +P N+     ++DL FN L+     SF     L+ L LS  E++   
Sbjct: 14  CMELNFYK-----IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 280 PKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSN 339
              + ++  L TL L+ N +          LSS      L+ L    +    +      +
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS------LQKLVAVETNLASLENFPIGH 122

Query: 340 ISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISN- 398
           +  LKEL++A+N                    + S K+  +F         +E LD+S+ 
Sbjct: 123 LKTLKELNVAHN-------------------LIQSFKLPEYFSNL----TNLEHLDLSSN 159

Query: 399 --TGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIP 456
               I  T       +      LDL+ N +                   I    F+ +  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-----------------IQPGAFKEI-- 200

Query: 457 PLPSNSSFLNLSKNRFSGSIS--FLCSISGSKLTYVDLSSNLLSGKLPD-CWWTFDSLVI 513
                   L L  N  S ++    +  ++G ++  + L      G L        + L  
Sbjct: 201 ----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 514 LNLENNS------FSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
           L +E         +   I D    L N+ + SL +  +      S+      + L+L   
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNC 314

Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
               + PT     L +L  L+  SNK           L  L+ LDLS N +S     C  
Sbjct: 315 KFG-QFPTL---KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLS-FKGCCSQ 367

Query: 628 NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVG 687
           +    T                              +K L+LS N +   +    + L  
Sbjct: 368 SDFGTTS-----------------------------LKYLDLSFNGVI-TMSSNFLGLEQ 397

Query: 688 LVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746
           L  L+   ++L       +   L++L +LD+S            + LS L V+ ++ N+ 
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 747 SGKIP 751
                
Sbjct: 458 QENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (359), Expect = 1e-35
 Identities = 96/548 (17%), Positives = 185/548 (33%), Gaps = 81/548 (14%)

Query: 62  LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG 121
             +LQ +D     ++     A   L  L  L L+ N             LS L+ L    
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVE 109

Query: 122 TVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLAN-SSDWF 180
           T  A      +G+L  L+ L++  N + S    ++ S+L+ L +L+L  + + +      
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 181 QVIGKLH-SLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPN--- 236
           +V+ ++     +L L    +  + P +   +     L  L L +N  + ++         
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR----LHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 237 ---ISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG---GIPKFFGNMCSLI 290
              +  + +        L+     + + +  L         L+     I   F  + ++ 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 291 TLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLAN 350
           + +L +          I+ +         + L L N   G           +LK L   +
Sbjct: 286 SFSLVSVT--------IERVKDFSYNFGWQHLELVNCKFGQFPTLKL---KSLKRLTFTS 334

Query: 351 NPLVLKLSHDWVPPFQLIIISLSSCKIG--PHFPKWLQTQNQIELLDISNTGISDTIPDW 408
           N      S   +P   L  + LS   +       +       ++ LD+S  G+  T+   
Sbjct: 335 NKGGNAFSEVDLP--SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 409 FWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLS 468
           F  L      LD   + +K                              +   S FL+L 
Sbjct: 392 FLGLEQL-EHLDFQHSNLKQ-----------------------------MSEFSVFLSL- 420

Query: 469 KNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRI-PD 527
                             L Y+D+S           +    SL +L +  NSF     PD
Sbjct: 421 ----------------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 528 SMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVL 587
               L+N+  L L   +L     ++F + S L++L++  N L   +P  + + L++L  +
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKI 523

Query: 588 SLKSNKFH 595
            L +N + 
Sbjct: 524 WLHTNPWD 531

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  157 bits (398), Expect = 1e-40
 Identities = 104/539 (19%), Positives = 192/539 (35%), Gaps = 42/539 (7%)

Query: 215 SLETLVLSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFN 273
           +         + TS     +P  +++   S+DL FN++        +    L+ L L  +
Sbjct: 6   ASGVCDGRSRSFTS-----IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 274 ELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVI 332
            +       F ++ SL  L+LS+N LS   S     LSS      LK L L  N    + 
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS------LKYLNLMGNPYQTLG 114

Query: 333 SESFFSNISNLKELHLANNPLVLKLSHDWVPPF-QLIIISLSSCKIGPHFPKWLQTQNQI 391
             S F N++NL+ L + N     ++          L  + + +  +  +  + L++   I
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 392 ELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHF 451
             L +  +  +  +  +   LS+   +L+L    +        S          +    F
Sbjct: 175 HHLTLHLSESAFLLEIFADILSS-VRYLELRDTNLAR---FQFSPLPVDEVSSPMKKLAF 230

Query: 452 EGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSL 511
            G +    S +  L L +     S       + + L   + S + +  +L        ++
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK--VETVTI 288

Query: 512 VILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYG 571
             L++        +      L+ ++ +++ N+++     S  ++   L  LDL +N +  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 572 EIPTWMG--ESLSNLIVLSLKSNKFH--GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
           E         +  +L  L L  N      K    L  L  L  LD+S N     +P    
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ 407

Query: 628 NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVG 687
               M             L L+  G           ++ L++SNNNL+ +     + L  
Sbjct: 408 WPEKMR-----------FLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFS---LFLPR 452

Query: 688 LVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746
           L  L +S+N L     P       L  + +SRNQL         +L+ L  + L  N  
Sbjct: 453 LQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (356), Expect = 2e-35
 Identities = 97/525 (18%), Positives = 195/525 (37%), Gaps = 45/525 (8%)

Query: 92  LNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFST 151
            +     F+  P     G  + ++ LDL            L   + LQ L L S+ + +T
Sbjct: 10  CDGRSRSFTSIPS----GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NT 64

Query: 152 GNLDWLSHLSYLRYLNLDESNLAN-SSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHL 210
              D    L  L +L+L +++L++ SS WF     L SLK L+L       +   SL   
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG---PLSSLKYLNLMGNPYQTLGVTSL--F 119

Query: 211 NSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRL 270
            + T+L+TL + +    S I        +    +++    L+    +S + +  + HL L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 271 SFNELEGGIPKFFGNMCSLITLNLSNNKLSG------------QLSEIIQNLSSGCLENS 318
             +E    +  F   + S+  L L +  L+                + +    S   + S
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 319 LKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIG 378
              L         +SE  F + +         +   +      V    +  + +    + 
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 379 PHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFG 438
                      +++ + + N+ +      +  +L +   FLDL+ N +  +    S+  G
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS-LEFLDLSENLMVEEYLKNSACKG 358

Query: 439 --TSNPGIDISSNHFEGLIPPLPSNSSF-----LNLSKNRFSGSISFLCSISG-SKLTYV 490
              S   + +S NH   +        +      L++S+N F        S     K+ ++
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH---PMPDSCQWPEKMRFL 415

Query: 491 DLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELS 550
           +LSS  +   +  C     +L +L++ NN+          FL  +Q L +  N+L   L 
Sbjct: 416 NLSSTGIR-VVKTC--IPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLP 467

Query: 551 SSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH 595
            +      L ++ + +N L   +P  + + L++L  + L +N + 
Sbjct: 468 DAS-LFPVLLVMKISRNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 99.8 bits (249), Expect = 6e-22
 Identities = 72/396 (18%), Positives = 136/396 (34%), Gaps = 40/396 (10%)

Query: 391 IELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-------GKLPNLSSRFGTSNPG 443
           ++ LD+S   I+          +N    L L S++I          L +L          
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACAN-LQVLILKSSRINTIEGDAFYSLGSLEH-------- 78

Query: 444 IDISSNHFEGLIPPLPSNSS---FLNLSKNRFSGSISFLCSISG-SKLTYVDLSSNLLSG 499
           +D+S NH   L        S   +LNL  N +  ++         + L  + + +     
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 500 KLPDCWWTFD---SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNC 556
           ++      F    SL  L ++  S       S+  +++I  L+LH +     L       
Sbjct: 138 EIRR--IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 557 SQLRLLDLGKNALYGEIPTW--MGESLSNLIVLSLKSNKFHG-------KIPFQLCQLAF 607
           S +R L+L    L     +   + E  S +  L+ + +           K+   + +L+ 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 608 LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL 667
           ++  D +LN +    P   +  + + +  +                     S L  VK +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 668 ELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPK---IGQLKSLDFLDLSRNQL-- 722
            + N+ +          L  L  L+LS+N +  +        G   SL  L LS+N L  
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 723 VGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQS 758
           +      L  L  L+ +D+S N       +    + 
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 96.7 bits (241), Expect = 5e-21
 Identities = 60/342 (17%), Positives = 122/342 (35%), Gaps = 44/342 (12%)

Query: 445 DISSNHFEGLIPPLPSNSSFLNLSKNRFS----GSISFLCSISGSKLTYVDLSSNLLSGK 500
           D  S  F  +   L +    L+LS N+ +    G +        + L  + L S+ ++  
Sbjct: 11  DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC-----ANLQVLILKSSRINTI 65

Query: 501 LPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTG-ELSSSFRNCSQL 559
             D +++  SL  L+L +N  S       G L +++ L+L  N      ++S F N + L
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS 619
           + L +G    + EI       L++L  L +K+          L  +  +  L L L+  +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 620 GKIPKCFNNFTAMT--------------------------------QERSSDPTIKDKLM 647
             +    +  +++                                     +D +  + L 
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 648 LTWKGSEREYRSTLGL-VKSLELSNNNLNGAVPEEI-MDLVGLVALNLSKNHLTGQISPK 705
           L     E          +  L   N + +  V E   ++ V +  L++ + +L   +S  
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305

Query: 706 IGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
              L+ +  + +  +++     S    L  L  +DLS N + 
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.9 bits (239), Expect = 8e-21
 Identities = 51/276 (18%), Positives = 101/276 (36%), Gaps = 26/276 (9%)

Query: 84  LKLHDLRHLNLSFNDFSGSPIPEFIGSLS--KLRYLDLFGTVFAGPIPPQLGNLSRLQHL 141
           ++  D     L   + S S +   +G +    +R L +        +      L +++ +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 142 DLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSS-DWFQVIGKLHSLKTLSLHSCYLP 200
            + ++ +F      +  HL  L +L+L E+ +           G   SL+TL L   +L 
Sbjct: 316 TVENSKVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTS--SIYPWLPNISSIFISIDLGFNQLQGSIPES 258
             +  +   L +  +L +L +S N          W   +      ++L    ++      
Sbjct: 375 -SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM----RFLNLSSTGIRVVKTCI 429

Query: 259 FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENS 318
            Q    LE L +S N L+     F   +  L  L +S NKL          L    L   
Sbjct: 430 PQT---LEVLDVSNNNLD----SFSLFLPRLQELYISRNKLK--------TLPDASLFPV 474

Query: 319 LKSLYLENSLTGVISESFFSNISNLKELHLANNPLV 354
           L  + +  +    + +  F  +++L+++ L  NP  
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.1 bits (216), Expect = 6e-18
 Identities = 79/429 (18%), Positives = 152/429 (35%), Gaps = 70/429 (16%)

Query: 62  LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG 121
           L  L  ++  +  LR   S +L  + D+ HL L  ++ +      F   LS +RYL+L  
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL-EIFADILSSVRYLELRD 205

Query: 122 TVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQ 181
           T           NL+R Q   L  + + S             R   L + +        +
Sbjct: 206 T-----------NLARFQFSPLPVDEVSSPMK------KLAFRGSVLTDESFNELLKLLR 248

Query: 182 VIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIF 241
            I +L  ++        L    P   + ++    +ET+ +   ++               
Sbjct: 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ------------- 295

Query: 242 ISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG 301
                    L   +   +  +  ++ + +  +++      F  ++ SL  L+LS N +  
Sbjct: 296 -------FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV- 347

Query: 302 QLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESF-FSNISNLKELHLANNPLVLKLSH 359
              E ++N +      SL++L L +N L  +         + NL  L ++ N     +  
Sbjct: 348 --EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404

Query: 360 DWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFL 419
               P ++  ++LSS  I        QT   +E+LD+SN  +  +   +   L      L
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIPQT---LEVLDVSNNNLD-SFSLFLPRLQE----L 456

Query: 420 DLASNQIK-----GKLPNLSSRFGTSNPGIDISSNHF----EGLIPPLPSNSSFLNLSKN 470
            ++ N++K        P L          + IS N      +G+   L S    + L  N
Sbjct: 457 YISRNKLKTLPDASLFPVLLV--------MKISRNQLKSVPDGIFDRLTSLQK-IWLHTN 507

Query: 471 RFSGSISFL 479
            +  S   +
Sbjct: 508 PWDCSCPRI 516

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.9 bits (213), Expect = 2e-17
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 22/278 (7%)

Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
           + +  +DLS N ++           +L +L L+++  +    D+   L +++ L L +N 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ-LC 603
           L+   SS F   S L+ L+L  N       T +  +L+NL  L + + +   +I      
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 604 QLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL 663
            L  L  L++   ++     +   +   +                        +   L  
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF--------LLEIFADILSS 197

Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTG----------QISPKIGQLKSLD 713
           V+ LEL + NL       +        +       +           ++   I +L  ++
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 714 FLDLSRNQLV---GGIPSSLSQLSGLSVMDLSYNNLSG 748
           F D + N L          +S+L  +  + +   ++  
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (346), Expect = 2e-34
 Identities = 98/459 (21%), Positives = 183/459 (39%), Gaps = 72/459 (15%)

Query: 81  PALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQH 140
             +  L++L  +N S N  +       + +L+KL  + +     A   P  L NL+ L  
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 141 LDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLP 200
           L L +N +    ++D L +L+ L  L L  + +++ S     +  L SL+ LS  +    
Sbjct: 117 LTLFNNQI---TDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQQLSFGNQ--- 166

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI--FISIDLGFNQLQGSIPES 258
                 L  L + T+LE L +S N ++      +  ++ +    S+    NQ+    P  
Sbjct: 167 ---VTDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITP-- 216

Query: 259 FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENS 318
              +  L+ L L+ N+L+        ++ +L  L+L+NN++S      +  L+       
Sbjct: 217 LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLT------K 266

Query: 319 LKSLYLE-NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF----QLIIISLS 373
           L  L L  N ++ +      + ++ L  L L  N L        + P      L  ++L 
Sbjct: 267 LTELKLGANQISNISP---LAGLTALTNLELNENQLED------ISPISNLKNLTYLTLY 317

Query: 374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----G 428
              I       + +  +++ L   N  +SD       NL+N  ++L    NQI       
Sbjct: 318 FNNI--SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTN-INWLSAGHNQISDLTPLA 372

Query: 429 KLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSIS-GSKL 487
            L  ++         + ++   +        +N S  N  KN  +G++    +IS G   
Sbjct: 373 NLTRITQ--------LGLNDQAWTNAPVNYKANVSIPNTVKNV-TGALIAPATISDGGSY 423

Query: 488 TYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIP 526
           T  D++ NL S    +  +TF   V +     +FSG + 
Sbjct: 424 TEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  124 bits (313), Expect = 2e-30
 Identities = 103/498 (20%), Positives = 183/498 (36%), Gaps = 78/498 (15%)

Query: 215 SLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNE 274
            L +  ++ +   + I+     ++   +   LG   +  ++ ++   +  +  L+     
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEK-MKTVLGKTNVTDTVSQT--DLDQVTTLQADRLG 57

Query: 275 LEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVIS 333
           ++         + +L  +N SNN+L+      ++NL+       L  + +  N +  +  
Sbjct: 58  IK--SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTK------LVDILMNNNQIADITP 107

Query: 334 ESFFSNISNLKELHLANNPLVLKLSHDWVPPF----QLIIISLSSCKIGPHFPKWLQTQN 389
               +N++NL  L L NN    +++   + P      L  + LSS  I       L    
Sbjct: 108 ---LANLTNLTGLTLFNN----QITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLT 156

Query: 390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----GKLPNLSSRFGTSNPGI 444
            ++ L   N  ++D  P    NL+     LD++SN++       KL NL S        +
Sbjct: 157 SLQQLSFGNQ-VTDLKP--LANLTT-LERLDISSNKVSDISVLAKLTNLES--------L 204

Query: 445 DISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLP 502
             ++N     I PL   ++   L+L+ N+    I  L S++   LT +DL++N +S   P
Sbjct: 205 IATNNQISD-ITPLGILTNLDELSLNGNQLK-DIGTLASLT--NLTDLDLANNQISNLAP 260

Query: 503 DCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562
               T   L  L L  N  S      +  L  +  L L+ N+L     S   N   L  L
Sbjct: 261 LSGLT--KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYL 314

Query: 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI 622
            L  N +    P     SL+ L  L   +NK        L  L  +  L    N IS   
Sbjct: 315 TLYFNNISDISPV---SSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLT 369

Query: 623 PKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAV-PEE 681
           P    N T +TQ   +D    +  +           +    V       N     + P  
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPV-----------NYKANVSIPNTVKNVTGALIAPAT 416

Query: 682 IMDLVGLVALNLSKNHLT 699
           I D       +++ N  +
Sbjct: 417 ISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  114 bits (288), Expect = 4e-27
 Identities = 92/516 (17%), Positives = 171/516 (33%), Gaps = 124/516 (24%)

Query: 257 ESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLE 316
            +   +       L    +   +     ++  + TL      +   +  + + L++    
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-IDGV-EYLNN---- 69

Query: 317 NSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSC 375
             L  +    N LT +   +   N++ L ++ + NN +               I  L++ 
Sbjct: 70  --LTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIA-------------DITPLANL 111

Query: 376 KIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSS 435
                          +  L + N  I+D  P    NL+N  + L+L+SN I         
Sbjct: 112 T-------------NLTGLTLFNNQITDIDP--LKNLTN-LNRLELSSNTISD------- 148

Query: 436 RFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISG-SKLTYVDLSS 494
                                 + + S   +L +  F   ++ L  ++  + L  +D+SS
Sbjct: 149 ----------------------ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186

Query: 495 NLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFR 554
           N +S           +L  L   NN  S   P  +G L N+  LSL+ N+L      +  
Sbjct: 187 NKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLA 240

Query: 555 NCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLS 614
           + + L  LDL  N +    P      L+ L  L L +N+     P  L  L  L  L+L+
Sbjct: 241 SLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295

Query: 615 LNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNL 674
            N +    P   +N   +T                                 L L  NN+
Sbjct: 296 ENQLEDISP--ISNLKNLT--------------------------------YLTLYFNNI 321

Query: 675 NGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLS 734
           +      +  L  L  L    N ++      +  L ++++L    NQ+    P  L+ L+
Sbjct: 322 SD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLT 375

Query: 735 GLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPEL 770
            ++ + L+    +          S  +TV      L
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (266), Expect = 3e-24
 Identities = 78/384 (20%), Positives = 147/384 (38%), Gaps = 52/384 (13%)

Query: 78  TISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSR 137
           T    L  L +L  L LS N  S       +  L+ L+ L   G       P  L NL+ 
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSF-GNQVTDLKP--LANLTT 178

Query: 138 LQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSC 197
           L+ LD+ SN +    ++  L+ L+ L  L    + +++ +     +G L +L  LSL+  
Sbjct: 179 LERLDISSNKV---SDISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGN 231

Query: 198 YLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPE 257
            L       +  L S T+L  L L++N +++     L  ++ +   + LG NQ+    P 
Sbjct: 232 QL-----KDIGTLASLTNLTDLDLANNQISNL--APLSGLTKL-TELKLGANQISNISP- 282

Query: 258 SFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN 317
               +  L +L L+ N+LE        N+ +L  L L  N +S      + +L+      
Sbjct: 283 -LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLT------ 331

Query: 318 SLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF----QLIIISL 372
            L+ L+   N ++ V S    +N++N+  L   +N +        + P     ++  + L
Sbjct: 332 KLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQI------SDLTPLANLTRITQLGL 382

Query: 373 SSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPN 432
           +          +    +    +      +    P    +  + ++  D+  N        
Sbjct: 383 NDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGS-YTEPDITWNLPS-YTNE 438

Query: 433 LSSRFGTSNPGIDISSNHFEGLIP 456
           +S  F      I   +  F G + 
Sbjct: 439 VSYTFSQPVT-IGKGTTTFSGTVT 461

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  129 bits (325), Expect = 6e-32
 Identities = 77/411 (18%), Positives = 141/411 (34%), Gaps = 41/411 (9%)

Query: 214 TSLETLVLSDNNLTS---SIYPWLPNISSIFISIDLGFNQLQGSIPE-SFQHMVYLEHLR 269
             +  + LS N++     + +  L ++      + +        I   +F+ +  L  L+
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDL----QFLKVEQQTPGLVIRNNTFRGLSSLIILK 85

Query: 270 LSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYL-EN 326
           L +N+        F  + +L  L L+   L G +      LS    +   SL+ L L +N
Sbjct: 86  LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV------LSGNFFKPLTSLEMLVLRDN 139

Query: 327 SLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQ 386
           ++  +   SFF N+     L L  N +      D +         L              
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS----------- 188

Query: 387 TQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDI 446
               I L D++   +        +  ++  + LDL+ N  K  +               +
Sbjct: 189 ---SITLQDMNEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

Query: 447 SSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWW 506
             ++   +       + F +     F G       +  S +   DLS + +   L   + 
Sbjct: 245 ILSNSYNMGSSFGHTN-FKDPDNFTFKG-------LEASGVKTCDLSKSKIFALLKSVFS 296

Query: 507 TFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGK 566
            F  L  L L  N  +    ++   L ++  L+L  N L    S  F N  +L +LDL  
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356

Query: 567 NALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNN 617
           N +   +       L NL  L+L +N+          +L  LQ + L  N 
Sbjct: 357 NHI-RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (255), Expect = 5e-23
 Identities = 85/486 (17%), Positives = 141/486 (29%), Gaps = 113/486 (23%)

Query: 114 LRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNL 173
           + Y+DL     A         L  LQ L +           +    LS L  L LD +  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 174 ANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPW 233
                                          L     N   +LE L L+  NL  ++   
Sbjct: 92  LQ-----------------------------LETGAFNGLANLEVLTLTQCNLDGAVLS- 121

Query: 234 LPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPK-FFGNMCSLITL 292
                                    F+ +  LE L L  N ++   P  FF NM     L
Sbjct: 122 ----------------------GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159

Query: 293 NLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNP 352
           +L+ NK+     E + N                                +   L L++  
Sbjct: 160 DLTFNKVKSICEEDLLNFQG----------------------------KHFTLLRLSSIT 191

Query: 353 LVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNL 412
           L                  ++   +G            I  LD+S  G  +++   F++ 
Sbjct: 192 L----------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235

Query: 413 SNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRF 472
                   L  +       +            D  +  F+GL     S     +LSK++ 
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFG-----HTNFKDPDNFTFKGLE---ASGVKTCDLSKSKI 287

Query: 473 SGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLV---ILNLENNSFSGRIPDSM 529
             ++        + L  + L+ N ++ K+ D    F  L     LNL  N          
Sbjct: 288 F-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDN--AFWGLTHLLKLNLSQNFLGSIDSRMF 343

Query: 530 GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSL 589
             L  ++ L L  N +      SF     L+ L L  N L   +P  + + L++L  + L
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 402

Query: 590 KSNKFH 595
            +N + 
Sbjct: 403 HTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 67/343 (19%), Positives = 126/343 (36%), Gaps = 57/343 (16%)

Query: 455 IPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLV-- 512
           +P LP++ ++++LS N  +  ++         L ++ +        + +   TF  L   
Sbjct: 25  VPELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRN--NTFRGLSSL 81

Query: 513 -ILNLENNSF-------------------------SGRIPDSMGF--LQNIQTLSLHNNR 544
            IL L+ N F                            +  +  F  L +++ L L +N 
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF-FKPLTSLEMLVLRDNN 140

Query: 545 LTG-ELSSSFRNCSQLRLLDLGKNALYGEIP--TWMGESLSNLIVLSLKSNKFHGKIPFQ 601
           +   + +S F N  +  +LDL  N +   I     +     +  +L L S        + 
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 602 LCQ--------LAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGS 653
           L             +  LDLS N     + K F +  A T+ +S   +    +  ++  +
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259

Query: 654 EREYRSTLGL-------VKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQISPK 705
             +              VK+ +LS + +  A+ + +      L  L L++N +  +I   
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDN 317

Query: 706 I-GQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
               L  L  L+LS+N L          L  L V+DLSYN++ 
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 63/322 (19%), Positives = 117/322 (36%), Gaps = 62/322 (19%)

Query: 82  ALLKLHDLRHLNLSFNDFSGSPIPEFI-GSLSKLRYLDLFGTVFAGPIPPQ--LGNLSRL 138
           A   L +L  L L+  +  G+ +       L+ L  L L        I P     N+ R 
Sbjct: 98  AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRF 156

Query: 139 QHLDLGSNYLFSTGNLDWLS----HLSYLRYLNLDESNLANSSDWFQVIG---KLHSLKT 191
             LDL  N + S    D L+    H + LR  ++   ++      ++  G   K  S+ T
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216

Query: 192 LSLHSCYLPPVIP--------------LSLNHLN----------------------SSTS 215
           L L        +               L L++                         ++ 
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 216 LETLVLSDNNLTS---SIYPWLPNISSIFISIDLGFNQLQGSIPE-SFQHMVYLEHLRLS 271
           ++T  LS + + +   S++    ++  +     L  N++   I + +F  + +L  L LS
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQL----TLAQNEIN-KIDDNAFWGLTHLLKLNLS 331

Query: 272 FNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGV 331
            N L     + F N+  L  L+LS N +     +    L       +LK L L+ +    
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP------NLKELALDTNQLKS 385

Query: 332 ISESFFSNISNLKELHLANNPL 353
           + +  F  +++L+++ L  NP 
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.2 bits (198), Expect = 7e-16
 Identities = 74/387 (19%), Positives = 136/387 (35%), Gaps = 55/387 (14%)

Query: 82  ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQ-LGNLSRLQH 140
           +  +L DL+ L +                LS L  L L    F   +       L+ L+ 
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEV 107

Query: 141 LDLGSNYLFSTG-NLDWLSHLSYLRYLNLDESNLA--NSSDWFQVIGKLHSLKTLSLHSC 197
           L L    L     + ++   L+ L  L L ++N+     + +F     +     L L   
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL---NMRRFHVLDLTFN 164

Query: 198 YLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPE 257
            +  +    L +         L LS   L                  D+    L      
Sbjct: 165 KVKSICEEDLLNF-QGKHFTLLRLSSITLQ-----------------DMNEYWLGWEKCG 206

Query: 258 SFQHMVYLEHLRLSFNELEGGIPKFFGNMCS---LITLNLSNNKLSG------QLSEIIQ 308
           +      +  L LS N  +  + K F +  +   + +L LSN+   G         +   
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 309 NLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPP---- 364
               G   + +K+  L  S    + +S FS+ ++L++L LA N    +++   +      
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN----EINK--IDDNAFW 320

Query: 365 --FQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLA 422
               L+ ++LS   +G    +  +  +++E+LD+S   I       F  L N    L L 
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN-LKELALD 379

Query: 423 SNQIK-------GKLPNLSSRFGTSNP 442
           +NQ+K        +L +L   +  +NP
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 7e-11
 Identities = 41/230 (17%), Positives = 77/230 (33%), Gaps = 43/230 (18%)

Query: 534 NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNK 593
           ++  + L  N +     +SF     L+ L + +      I       LS+LI+L L  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 594 FHGKIPFQLCQLAFLQVLDLSLNNI-SGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKG 652
           F          LA L+VL L+  N+    +    N F  +T                   
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTS------------------ 130

Query: 653 SEREYRSTLGLVKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLT----------GQ 701
                      ++ L L +NN+    P      +     L+L+ N +             
Sbjct: 131 -----------LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179

Query: 702 ISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIP 751
               + +L S+   D++   L      +  + + ++ +DLS N     + 
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  126 bits (319), Expect = 4e-31
 Identities = 93/552 (16%), Positives = 186/552 (33%), Gaps = 112/552 (20%)

Query: 79  ISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRL 138
           I+P  +    L+      ++ +   +P    ++          + +    PP  G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 139 QHLDLGSNYLFSTGNLDWLSH---------LSYLRYLNLDESNLANSSDWFQVIGKLHSL 189
               L          L+ L++           +L  L    ++L   ++  ++   L SL
Sbjct: 61  AVSRLRDCLDRQAHELE-LNNLGLSSLPELPPHLESLVASCNSL---TELPELPQSLKSL 116

Query: 190 KTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIF--ISIDLG 247
              + +   L  + P           LE L +S+N L       LP + +      ID+ 
Sbjct: 117 LVDNNNLKALSDLPP----------LLEYLGVSNNQLEK-----LPELQNSSFLKIIDVD 161

Query: 248 FNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEII 307
            N L+  +P+       LE +    N+LE        N+  L  +   NN     L ++ 
Sbjct: 162 NNSLK-KLPDLPPS---LEFIAAGNNQLE--ELPELQNLPFLTAIYADNN----SLKKLP 211

Query: 308 QNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQL 367
                     SL+S+   N++   + E    N+  L  ++  NN L              
Sbjct: 212 DLPL------SLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLK------------- 250

Query: 368 IIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK 427
                         P        +E L++ +  ++  +P+   +L+      +   + + 
Sbjct: 251 ------------TLPDLPP---SLEALNVRDNYLT-DLPELPQSLT-FLDVSENIFSGLS 293

Query: 428 GKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKL 487
              PNL          ++ SSN    L   LP +   LN+S N+    +  L      +L
Sbjct: 294 ELPPNLYY--------LNASSNEIRSL-CDLPPSLEELNVSNNKLI-ELPALP----PRL 339

Query: 488 TYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTG 547
             +  S N L+ ++P+      +L  L++E N      PD    +++   L ++++    
Sbjct: 340 ERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDIPESVED---LRMNSH---- 387

Query: 548 ELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAF 607
            L+        L+ L +  N L  E P    +   ++  L + S +      F       
Sbjct: 388 -LAEVPELPQNLKQLHVETNPLR-EFP----DIPESVEDLRMNSERVVDPYEFAHETTDK 441

Query: 608 LQVLDLSLNNIS 619
           L+      ++  
Sbjct: 442 LEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (261), Expect = 1e-23
 Identities = 100/630 (15%), Positives = 184/630 (29%), Gaps = 189/630 (30%)

Query: 128 IPPQLGNLSRLQHLDLGSNYLFSTGNLDWL----SHLSYLRYLNLDESNLANSSDWFQVI 183
           I P+  + + LQ     S+      NL  +     ++          S    ++      
Sbjct: 3   INPRNVSNTFLQEPLRHSS------NLTEMPVEAENVKSKTEYYNAWSEWERNAP--PGN 54

Query: 184 GKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFIS 243
           G+   +    L  C                     L L++  L+S     LP +     S
Sbjct: 55  GEQREMAVSRLRDCLD--------------RQAHELELNNLGLSS-----LPELPPHLES 95

Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL 303
           +    N L   +PE  Q +  L     +   L    P        L  L +SNN+L  +L
Sbjct: 96  LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KL 146

Query: 304 SEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWV 362
            E+            LK + +  NSL             +L+ +   NN L         
Sbjct: 147 PEL------QNSSF-LKIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQLE-------- 186

Query: 363 PPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLA 422
                 +  L +                +  +   N  +   +PD   +L +    +   
Sbjct: 187 -----ELPELQNLP-------------FLTAIYADNNSLK-KLPDLPLSLES----IVAG 223

Query: 423 SNQIK-----GKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSIS 477
           +N ++       LP L++        I   +N  + L P LP +   LN+  N  +    
Sbjct: 224 NNILEELPELQNLPFLTT--------IYADNNLLKTL-PDLPPSLEALNVRDNYLTDLPE 274

Query: 478 FLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQT 537
              S     LT++D+S N+ S  L +      +L  LN  +N     + D      +++ 
Sbjct: 275 LPQS-----LTFLDVSENIFS-GLSEL---PPNLYYLNASSNEIR-SLCDL---PPSLEE 321

Query: 538 LSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGK 597
           L++ NN+L                          E+P         L  L    N    +
Sbjct: 322 LNVSNNKLI-------------------------ELP----ALPPRLERLIASFNHLA-E 351

Query: 598 IPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREY 657
           +P     L   + L +  N +  + P    +                             
Sbjct: 352 VPELPQNL---KQLHVEYNPLR-EFPDIPESVE--------------------------- 380

Query: 658 RSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDL 717
                     +L  N+    VPE       L  L++  N L  +       ++ L    +
Sbjct: 381 ----------DLRMNSHLAEVPELPQ---NLKQLHVETNPLR-EFPDIPESVEDLR---M 423

Query: 718 SRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
           +  ++V     +      L      +++  
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.5 bits (233), Expect = 3e-20
 Identities = 83/458 (18%), Positives = 149/458 (32%), Gaps = 104/458 (22%)

Query: 309 NLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLI 368
           N  +       + L   ++LT +  E    N+ +  E + A +              ++ 
Sbjct: 4   NPRNVSNTFLQEPLRHSSNLTEMPVE--AENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 369 IISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK- 427
           +  L  C              Q   L+++N G+S ++P+   +L +    L  + N +  
Sbjct: 62  VSRLRDCLD-----------RQAHELELNNLGLS-SLPELPPHLES----LVASCNSLTE 105

Query: 428 -----GKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSI 482
                  L +L           + +       +  LP    +L +S N+         S 
Sbjct: 106 LPELPQSLKSLLV--------DNNNLKA----LSDLPPLLEYLGVSNNQLEKLPELQNS- 152

Query: 483 SGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHN 542
             S L  +D+ +N L  KLPD      SL  +   NN     +P+ +  L  +  +   N
Sbjct: 153 --SFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADN 204

Query: 543 NRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQL 602
           N L             L  +  G N L  E+P    ++L  L  +   +N     +P   
Sbjct: 205 NSLK----KLPDLPLSLESIVAGNNIL-EELPEL--QNLPFLTTIYADNNLLK-TLPDLP 256

Query: 603 CQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLG 662
             L  L V D  L ++                                            
Sbjct: 257 PSLEALNVRDNYLTDLPELPQSL------------------------------------- 279

Query: 663 LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL 722
               L++S N  +G + E       L  LN S N +            SL+ L++S N+L
Sbjct: 280 --TFLDVSENIFSG-LSELP---PNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKL 329

Query: 723 VGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFN 760
           +  +P+   +L  L     S+N+L+        L+  +
Sbjct: 330 IE-LPALPPRLERL---IASFNHLAEVPELPQNLKQLH 363

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.7 bits (223), Expect = 6e-19
 Identities = 79/448 (17%), Positives = 145/448 (32%), Gaps = 102/448 (22%)

Query: 78  TISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSR 137
            +      L  L   N +    S  P          L YL +          P+L N S 
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLP--------PLLEYLGVSNNQLEK--LPELQNSSF 154

Query: 138 LQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSC 197
           L+ +D+ +N L    +L        L ++    + L    +    +  L  L  +   + 
Sbjct: 155 LKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEELPE----LQNLPFLTAIYADNN 205

Query: 198 YLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIF--ISIDLGFNQLQGSI 255
            L   +P          SLE++V  +N L       LP + ++    +I    N L+ ++
Sbjct: 206 SL-KKLPDLP------LSLESIVAGNNILEE-----LPELQNLPFLTTIYADNNLLK-TL 252

Query: 256 PESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCL 315
           P+       LE L +  N L   +P+   ++  L       + LS               
Sbjct: 253 PDLPPS---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP----------- 297

Query: 316 ENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSS 374
             +L  L    N +      S      +L+EL+++NN L+                    
Sbjct: 298 --NLYYLNASSNEIR-----SLCDLPPSLEELNVSNNKLI-------------------- 330

Query: 375 CKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLS 434
                  P       ++E L  S   ++  +P+   NL      L +  N ++ + P++ 
Sbjct: 331 -----ELPALPP---RLERLIASFNHLA-EVPELPQNLKQ----LHVEYNPLR-EFPDIP 376

Query: 435 SRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSS 494
                     D+  N     +P LP N   L++  N     +     I  S +  + ++S
Sbjct: 377 ESVE------DLRMNSHLAEVPELPQNLKQLHVETNP----LREFPDIPES-VEDLRMNS 425

Query: 495 NLLSGKLPDCWWTFDSLVILNLENNSFS 522
             +         T D L     E++   
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  125 bits (316), Expect = 1e-30
 Identities = 71/501 (14%), Positives = 145/501 (28%), Gaps = 79/501 (15%)

Query: 254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSG 313
           +I E  Q+    +  +++ + L+  +     +  ++  L+LS N LS   +  +   +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-- 58

Query: 314 CLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISL 372
                L+ L L  N L   +      ++S L+ L L NN +                   
Sbjct: 59  ----KLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE----------------- 94

Query: 373 SSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPN 432
                       L     IE L  +N  IS           N    + LA+N+I      
Sbjct: 95  ------------LLVGPSIETLHAANNNISRVSCSRGQGKKN----IYLANNKIT----- 133

Query: 433 LSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISG-SKLTYVD 491
                        +             S   +L+L  N    +++F    +    L +++
Sbjct: 134 ------------MLRDLDEGCR-----SRVQYLDLKLNEID-TVNFAELAASSDTLEHLN 175

Query: 492 LSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSS 551
           L  N +   +      F  L  L+L +N  +  +         +  +SL NN+L   +  
Sbjct: 176 LQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 552 SFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVL 611
           + R    L   DL  N  +             +  ++ ++ K       + C +    + 
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLG 289

Query: 612 DLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN 671
                          +   A+ ++  +          +        R      + ++   
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHAL----LSGQGSETERLECERENQARQREIDALK 345

Query: 672 NNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG--GIPSS 729
                 + +  +     + L   K  L  Q+S        LD         +        
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 730 LSQLSGLSVMDLSYNNLSGKI 750
            S L  L  +   Y  +  + 
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  122 bits (308), Expect = 1e-29
 Identities = 82/519 (15%), Positives = 162/519 (31%), Gaps = 78/519 (15%)

Query: 104 IPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYL 163
           I E   + ++ +   +  +     +     +   ++ LDL  N L S  +   L+  + L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKL 60

Query: 164 RYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSD 223
             LNL  + L  + D    +  L +L+TL L++          +  L    S+ETL  ++
Sbjct: 61  ELLNLSSNVLYETLD----LESLSTLRTLDLNNN--------YVQELLVGPSIETLHAAN 108

Query: 224 NNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG-GIPKF 282
           NN++               +I L  N++             +++L L  NE++     + 
Sbjct: 109 NNISRVSCSRGQGKK----NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 283 FGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNIS 341
             +  +L  LNL  N +         ++    +   LK+L L  N L  +  E  F + +
Sbjct: 165 AASSDTLEHLNLQYNFIY--------DVKGQVVFAKLKTLDLSSNKLAFMGPE--FQSAA 214

Query: 342 NLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGI 401
            +  + L NN LV                            K L+    +E  D+   G 
Sbjct: 215 GVTWISLRNNKLV-------------------------LIEKALRFSQNLEHFDLRGNGF 249

Query: 402 S-DTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPS 460
              T+ D+F           +A   +K  L   +    T        +   E L  P   
Sbjct: 250 HCGTLRDFFSKNQR---VQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

Query: 461 NSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNS 520
               L   ++                   +    +    +L            ++     
Sbjct: 306 RLIALKRKEHAL-----------------LSGQGSETE-RLECERENQARQREIDALKEQ 347

Query: 521 FSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGES 580
           +   I       Q   TL      L  ++S+  R  ++L            E+     E 
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEEQ 406

Query: 581 LSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS 619
               ++ ++        +  Q  Q   ++  D+  +  +
Sbjct: 407 SPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  111 bits (279), Expect = 7e-26
 Identities = 64/411 (15%), Positives = 138/411 (33%), Gaps = 30/411 (7%)

Query: 75  LRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGN 134
           L+  ++       +++ L+LS N  S       +   +KL  L+L   V        L +
Sbjct: 22  LKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYE--TLDLES 78

Query: 135 LSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSL 194
           LS L+ LDL +NY+        L     +  L+   +N++  S       +    K + L
Sbjct: 79  LSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRVS-----CSRGQGKKNIYL 127

Query: 195 HSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGS 254
            +  +  +  L        + ++ L L  N + +  +  L   S     ++L +N +   
Sbjct: 128 ANNKITMLRDLDEGCR---SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 255 IPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGC 314
           +         L+ L LS N+L   +   F +   +  ++L NNKL   + + ++      
Sbjct: 184 VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ--- 237

Query: 315 LENSLKSLYLE-NSLTGVISESFFSNISNLKELHL-ANNPLVLKLSHDWVPPFQLIIISL 372
              +L+   L  N         FFS    ++ +       L  +   +   P      + 
Sbjct: 238 ---NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 373 SSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPN 432
               +   F   L    + E   +S  G      +       +   +D    Q +  + +
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVID 353

Query: 433 LSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSIS 483
             +    +   ++      +  +       + L+ +  +  G I    +  
Sbjct: 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.6 bits (230), Expect = 8e-20
 Identities = 47/250 (18%), Positives = 82/250 (32%), Gaps = 46/250 (18%)

Query: 510 SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNAL 569
              I  + ++S    +        N++ L L  N L+   ++     ++L LL+L  N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 570 YGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNF 629
           Y E      ESLS L  L L +N        +L     ++ L  + NNIS          
Sbjct: 71  Y-ETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQG- 121

Query: 630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLV 689
                                              K++ L+NN +      +      + 
Sbjct: 122 ----------------------------------KKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 690 ALNLSKNHLTG-QISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG 748
            L+L  N +     +       +L+ L+L  N +   +   +   + L  +DLS N L+ 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF 205

Query: 749 KIPTVTQLQS 758
             P       
Sbjct: 206 MGPEFQSAAG 215

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.0 bits (192), Expect = 4e-15
 Identities = 38/334 (11%), Positives = 95/334 (28%), Gaps = 24/334 (7%)

Query: 75  LRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGN 134
           +             +++L+L  N+       E   S   L +L+L        +  Q+  
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-V 189

Query: 135 LSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSL 194
            ++L+ LDL SN L   G        + + +++L  + L         +    +L+   L
Sbjct: 190 FAKLKTLDLSSNKLAFMG--PEFQSAAGVTWISLRNNKLVLIEK---ALRFSQNLEHFDL 244

Query: 195 HSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGS 254
                           N         ++   +           +   +    G    +  
Sbjct: 245 RGNGFHCGTLRDFFSKN----QRVQTVAKQTVKKLTGQNEEECTVPTL-GHYGAYCCEDL 299

Query: 255 IPESFQHMVYLEHLRLSFNELEG----GIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNL 310
                  ++ L+    +    +G     +     N      ++    +    + ++    
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 311 SSGCLENSLKSLYLE-NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLII 369
                  +  +L  +  +L   +S    ++      L  A   + L+ + +   P QL+ 
Sbjct: 360 ------QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLR 413

Query: 370 ISLSSCKIGPHFPKWLQTQNQIELLDISNTGISD 403
             +   +      +     N I   D+     + 
Sbjct: 414 AIVKRYEEMYV-EQQSVQNNAIRDWDMYQHKETQ 446

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 655 REYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDF 714
            E +      K  ++++++L  A+         +  L+LS N L+   +  +     L+ 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 715 LDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFN 760
           L+LS N L       L  LS L  +DL+ N +  ++     +++ +
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLH 105

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 677 AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGL 736
           A+ E   +        ++ + L   ++       ++  LDLS N L     + L+  + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 737 SVMDLSYNNLSGKIPTVTQLQS 758
            +++LS N L      +  L +
Sbjct: 61  ELLNLSSNVLYE-TLDLESLST 81

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  120 bits (303), Expect = 7e-29
 Identities = 94/532 (17%), Positives = 165/532 (31%), Gaps = 64/532 (12%)

Query: 221 LSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGI 279
            S N L       +P ++S     +++  N +          +  L  L +S N ++   
Sbjct: 7   RSKNGLIH-----VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 280 PKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLE-NSLTGVISESFFS 338
              F     L  L+LS+NKL          +S     N LK L L  N+   +     F 
Sbjct: 62  ISVFKFNQELEYLDLSHNKL--------VKISCHPTVN-LKHLDLSFNAFDALPICKEFG 112

Query: 339 NISNLKELHLANNPL-VLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIEL-LDI 396
           N+S LK L L+   L    +          +++ L         P+ LQ  N   L +  
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 397 SNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIP 456
                   I D            ++       K     S          +S+     +  
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 457 PLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNL 516
              S    L L  +          ++    ++ V L   L          +  +L I  +
Sbjct: 233 TWNSFIRILQLVWH---------TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283

Query: 517 ENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTW 576
            ++ F            N+   +   +             S    LD   N L  +    
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFE 342

Query: 577 MGESLSNLIVLSLKSNKFH--GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQ 634
               L+ L  L L+ N+     KI     Q+  LQ LD+S N++S    K   + +    
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK--GDCSWTKS 400

Query: 635 ERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLS 694
                                        + SL +S+N L   +   +     +  L+L 
Sbjct: 401 -----------------------------LLSLNMSSNILTDTIFRCL--PPRIKVLDLH 429

Query: 695 KNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746
            N +   I  ++ +L++L  L+++ NQL         +L+ L  + L  N  
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (266), Expect = 3e-24
 Identities = 96/494 (19%), Positives = 172/494 (34%), Gaps = 63/494 (12%)

Query: 82  ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL 141
            +L L  LR L +S N      I  F     +L YLDL        I         L+HL
Sbjct: 40  DILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVK-ISCH--PTVNLKHL 95

Query: 142 DLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLK-TLSLHSCYLP 200
           DL  N   +        ++S L++L L  ++L  SS     I  L+  K  L L   Y  
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGETYGE 153

Query: 201 PVIPLSL-------NHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQG 253
              P  L        H+   T+ E   + D ++ +     L NI  +       +     
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSG 313
           +  ++   +  L    +                 ++   ++SN KL GQL     + S  
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 314 CLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS 373
            L+ +L    + + + G      +   SN+   +   +    ++ H   P          
Sbjct: 274 SLK-ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG--TRMVHMLCP---------- 320

Query: 374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNL 433
                          +    LD SN  ++DT+ +   +L+     L L  NQ+K +L  +
Sbjct: 321 ------------SKISPFLHLDFSNNLLTDTVFENCGHLTEL-ETLILQMNQLK-ELSKI 366

Query: 434 SSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLS 493
           +                          +   L++S+N  S             L  +++S
Sbjct: 367 AEMTTQ-------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 494 SNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSF 553
           SN+L+  +  C      + +L+L +N     IP  +  L+ +Q L++ +N+L       F
Sbjct: 408 SNILTDTIFRCLPP--RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF 464

Query: 554 RNCSQLRLLDLGKN 567
              + L+ + L  N
Sbjct: 465 DRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (257), Expect = 4e-23
 Identities = 80/499 (16%), Positives = 169/499 (33%), Gaps = 53/499 (10%)

Query: 112 SKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDES 171
            K   L++     +      + +LS+L+ L +  N +    ++        L YL+L  +
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHN 79

Query: 172 NLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIY 231
            L   S          +LK L L        +P+      + + L+ L LS  +L  S  
Sbjct: 80  KLVKIS-----CHPTVNLKHLDLSFNAFD-ALPIC-KEFGNMSQLKFLGLSTTHLEKSSV 132

Query: 232 PWLPNISSIFISIDLGFNQLQGSIPESFQ--HMVYLEHLRLSFNELEGGIPKFFGNMCSL 289
             + +++   + + LG    +   PE  Q  +   L  +  +  E    +      + +L
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 290 ITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLEN---SLTGVISESFFSNISNLKEL 346
              N+       + S  +  L+       L +L L N   +    I        + +   
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 347 HLANNPL-------VLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNT 399
            ++N  L           S   +    +  +          +   + +   I+   +S  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG- 311

Query: 400 GISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLP 459
             +  +     +  + F  LD ++N +                  D    +   L     
Sbjct: 312 --TRMVHMLCPSKISPFLHLDFSNNLLT-----------------DTVFENCGHL----- 347

Query: 460 SNSSFLNLSKNRFSGSISFLCSI--SGSKLTYVDLSSNLLSGKLPDCWWTF-DSLVILNL 516
           +    L L  N+    +S +  +      L  +D+S N +S        ++  SL+ LN+
Sbjct: 348 TELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 517 ENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTW 576
            +N  +  I         I+ L LH+N++   +         L+ L++  N L   +P  
Sbjct: 407 SSNILTDTIFRC--LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVPDG 462

Query: 577 MGESLSNLIVLSLKSNKFH 595
           + + L++L  + L +N + 
Sbjct: 463 IFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.0 bits (174), Expect = 7e-13
 Identities = 63/370 (17%), Positives = 106/370 (28%), Gaps = 75/370 (20%)

Query: 419 LDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFS----G 474
           L+++ N I                  ++ ++    L     S    L +S NR       
Sbjct: 26  LNISQNYIS-----------------ELWTSDILSL-----SKLRILIISHNRIQYLDIS 63

Query: 475 SISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGF--L 532
              F       +L Y+DLS N L  K+        +L  L+L  N+F   +P    F  +
Sbjct: 64  VFKFN-----QELEYLDLSHNKLV-KISCHPTV--NLKHLDLSFNAFD-ALPICKEFGNM 114

Query: 533 QNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN 592
             ++ L L    L     SS    + L +  +              E L +    SL   
Sbjct: 115 SQLKFLGLSTTHLE---KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 593 KFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLML---- 648
               K    +  ++   V +L L+NI   +     ++      +         L L    
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231

Query: 649 -TWKGSEREYRSTLGL-VKSLELSNNNLNGAVPEEIMD---------------------- 684
            TW    R  +      V    +SN  L G +     D                      
Sbjct: 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

Query: 685 -------LVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLS 737
                     +   N + +           ++     LD S N L   +  +   L+ L 
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 738 VMDLSYNNLS 747
            + L  N L 
Sbjct: 352 TLILQMNQLK 361

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (296), Expect = 7e-29
 Identities = 76/357 (21%), Positives = 155/357 (43%), Gaps = 52/357 (14%)

Query: 78  TISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSR 137
           T      +L  +  L ++    +     + I  L+ L YL+L G       P  L NL +
Sbjct: 35  TDVVTQEELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQITDISP--LSNLVK 89

Query: 138 LQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSC 197
           L +L +G+N +    ++  L +L+ LR L L+E N+++ S     +  L  + +L+L + 
Sbjct: 90  LTNLYIGTNKIT---DISALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGAN 142

Query: 198 YLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI--FISIDLGFNQLQGSI 255
           +    +   L+++   T L  L ++++ +       +  I+++    S+ L +NQ++   
Sbjct: 143 HNLSDLS-PLSNM---TGLNYLTVTESKVKD-----VTPIANLTDLYSLSLNYNQIEDIS 193

Query: 256 PESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCL 315
           P     +  L +     N++    P    NM  L +L + NNK++      + NLS    
Sbjct: 194 P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLS---- 243

Query: 316 ENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF----QLIII 370
              L  L +  N ++ +   +   +++ LK L++ +N    ++S   +       QL  +
Sbjct: 244 --QLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSN----QISD--ISVLNNLSQLNSL 292

Query: 371 SLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK 427
            L++ ++G    + +     +  L +S   I+D  P    +LS      D A+  IK
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK-MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  116 bits (293), Expect = 2e-28
 Identities = 71/419 (16%), Positives = 142/419 (33%), Gaps = 94/419 (22%)

Query: 132 LGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKT 191
             +L+      L    +    ++     L  +  L +    +A+       I  L +L+ 
Sbjct: 18  DADLAEGIRAVLQKASV---TDVVTQEELESITKLVVAGEKVASIQG----IEYLTNLEY 70

Query: 192 LSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQL 251
           L+L+   +  + PLS     +   L  L +  N +T      L N++++   + L  + +
Sbjct: 71  LNLNGNQITDISPLS-----NLVKLTNLYIGTNKITD--ISALQNLTNL-RELYLNEDNI 122

Query: 252 QGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLS 311
               P    ++  +  L L  N           NM  L  L ++ +K+       I NL+
Sbjct: 123 SDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD--VTPIANLT 177

Query: 312 SGCLENSLKSLYLE-NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIII 370
                  L SL L  N +  +      +++++L       N +               I 
Sbjct: 178 ------DLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQIT-------------DIT 215

Query: 371 SLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKL 430
            +++               ++  L I N  I+D  P    NLS   ++L++ +NQI    
Sbjct: 216 PVANMT-------------RLNSLKIGNNKITDLSP--LANLSQ-LTWLEIGTNQISD-- 257

Query: 431 PNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISG-SKL 487
                                   I  +   +    LN+  N+    IS +  ++  S+L
Sbjct: 258 ------------------------INAVKDLTKLKMLNVGSNQ----ISDISVLNNLSQL 289

Query: 488 TYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT 546
             + L++N L  +  +      +L  L L  N  +   P  +  L  + +    N  + 
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  112 bits (283), Expect = 4e-27
 Identities = 74/390 (18%), Positives = 152/390 (38%), Gaps = 59/390 (15%)

Query: 216 LETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNEL 275
             TL      + + I+P   +++   I   L    +   +    + +  +  L ++  ++
Sbjct: 2   AATLATLPAPI-NQIFP-DADLAEG-IRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 276 EGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISE 334
                +    + +L  LNL+ N+++      + NL        L +LY+  N +T +   
Sbjct: 57  AS--IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVK------LTNLYIGTNKITDI--- 103

Query: 335 SFFSNISNLKELHLANNPLVLKLSHDWVPPF----QLIIISLSSCKIGPHFPKWLQTQNQ 390
           S   N++NL+EL+L  +     +S   + P     ++  ++L +          L     
Sbjct: 104 SALQNLTNLRELYLNED----NISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTG 156

Query: 391 IELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----GKLPNLSSRFGTSNPGID 445
           +  L ++ + + D  P    NL++    L L  NQI+       L +L            
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTD-LYSLSLNYNQIEDISPLASLTSLHY--------FT 205

Query: 446 ISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPD 503
              N     I P+ + +    L +  N+ +  +S L ++S  +LT++++ +N +S    +
Sbjct: 206 AYVNQITD-ITPVANMTRLNSLKIGNNKIT-DLSPLANLS--QLTWLEIGTNQISD--IN 259

Query: 504 CWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD 563
                  L +LN+ +N  S      +  L  + +L L+NN+L  E        + L  L 
Sbjct: 260 AVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 564 LGKNALYGEIPTWMGESLSNLIVLSLKSNK 593
           L +N +    P     SLS +      +  
Sbjct: 318 LSQNHITDIRPL---ASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (280), Expect = 1e-26
 Identities = 65/380 (17%), Positives = 137/380 (36%), Gaps = 72/380 (18%)

Query: 390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----GKLPNLSSRFGTSNPGI 444
           +     +    ++D +      L +  + L +A  ++        L NL          +
Sbjct: 23  EGIRAVLQKASVTDVVT--QEELES-ITKLVVAGEKVASIQGIEYLTNLEY--------L 71

Query: 445 DISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLP 502
           +++ N     I PL +      L +  N+ +  IS L +++   L  + L+ + +S    
Sbjct: 72  NLNGNQITD-ISPLSNLVKLTNLYIGTNKIT-DISALQNLT--NLRELYLNEDNISD--I 125

Query: 503 DCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562
                   +  LNL  N         +  +  +  L++  +++     +   N + L  L
Sbjct: 126 SPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSL 182

Query: 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI 622
            L  N +    P     SL++L   +   N+     P  +  +  L  L +  N I+   
Sbjct: 183 SLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-- 235

Query: 623 PKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEI 682
               +    ++Q                             +  LE+  N ++      +
Sbjct: 236 ---LSPLANLSQ-----------------------------LTWLEIGTNQISD--INAV 261

Query: 683 MDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS 742
            DL  L  LN+  N ++  IS  +  L  L+ L L+ NQL       +  L+ L+ + LS
Sbjct: 262 KDLTKLKMLNVGSNQISD-ISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 743 YNNLSGKIP--TVTQLQSFN 760
            N+++   P  +++++ S +
Sbjct: 320 QNHITDIRPLASLSKMDSAD 339

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  109 bits (274), Expect = 5e-26
 Identities = 73/436 (16%), Positives = 155/436 (35%), Gaps = 98/436 (22%)

Query: 319 LKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIG 378
             +L    +    I     ++++      L    +   ++ + +    +  + ++  K+ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEELE--SITKLVVAGEKV- 56

Query: 379 PHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----GKLPNL 433
               + ++    +E L+++   I+D  P    NL    + L + +N+I        L NL
Sbjct: 57  -ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVK-LTNLYIGTNKITDISALQNLTNL 112

Query: 434 SSRFGTSNPGIDISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISGSKLTYVD 491
                     + ++ ++    I PL + +    LNL  N     +S L +++   L Y+ 
Sbjct: 113 RE--------LYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDLSPLSNMT--GLNYLT 161

Query: 492 LSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSS 551
           ++ + +               +  + N             L ++ +LSL+ N++     S
Sbjct: 162 VTESKVKD-------------VTPIAN-------------LTDLYSLSLNYNQIED--IS 193

Query: 552 SFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVL 611
              + + L       N +    P     +++ L  L + +NK     P  L  L+ L  L
Sbjct: 194 PLASLTSLHYFTAYVNQITDITPV---ANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248

Query: 612 DLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN 671
           ++  N IS       N    +T+                             +K L + +
Sbjct: 249 EIGTNQISD-----INAVKDLTK-----------------------------LKMLNVGS 274

Query: 672 NNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLS 731
           N ++      + +L  L +L L+ N L  +    IG L +L  L LS+N +       L+
Sbjct: 275 NQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLA 330

Query: 732 QLSGLSVMDLSYNNLS 747
            LS +   D +   + 
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.5 bits (241), Expect = 1e-21
 Identities = 71/444 (15%), Positives = 149/444 (33%), Gaps = 108/444 (24%)

Query: 265 LEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL 324
              L      +    P    ++   I   L    ++  ++   + L S      +  L +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELES------ITKLVV 51

Query: 325 -ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPK 383
               +  +        ++NL+ L+L  N +               I  LS+         
Sbjct: 52  AGEKVASI---QGIEYLTNLEYLNLNGNQIT-------------DISPLSNLV------- 88

Query: 384 WLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----GKLPNLSSRFG 438
                 ++  L I    I+D       NL+N    L L  + I        L  + S   
Sbjct: 89  ------KLTNLYIGTNKITD--ISALQNLTN-LRELYLNEDNISDISPLANLTKMYS--- 136

Query: 439 TSNPGIDISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISG-SKLTYVDLSSN 495
                +++ +NH    + PL + +   +L +++++    +  +  I+  + L  + L+ N
Sbjct: 137 -----LNLGANHNLSDLSPLSNMTGLNYLTVTESK----VKDVTPIANLTDLYSLSLNYN 187

Query: 496 LLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRN 555
            +    P    +  SL       N  +   P  +  +  + +L + NN++T    S   N
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLAN 241

Query: 556 CSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSL 615
            SQL  L++G N +  +I     + L+ L +L++ SN+           L+ L  L L+ 
Sbjct: 242 LSQLTWLEIGTNQI-SDINAV--KDLTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNN 296

Query: 616 NNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN 675
           N +  +  +     T +T                                +L LS N++ 
Sbjct: 297 NQLGNEDMEVIGGLTNLT--------------------------------TLFLSQNHIT 324

Query: 676 GAVPEEIMDLVGLVALNLSKNHLT 699
                 +  L  + + + +   + 
Sbjct: 325 DI--RPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 95.7 bits (239), Expect = 2e-21
 Identities = 54/346 (15%), Positives = 120/346 (34%), Gaps = 68/346 (19%)

Query: 419 LDLASNQIK-----GKLPNLSSRFGTSNPGIDISSNHFEGLIPP-LPSNSSFLNLSKNRF 472
           L      I        L               +       ++      + + L ++  + 
Sbjct: 5   LATLPAPINQIFPDADLAEGIR--------AVLQKASVTDVVTQEELESITKLVVAGEKV 56

Query: 473 SGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFL 532
           + SI  +  ++   L Y++L+ N ++   P        L  L +  N  +     ++  L
Sbjct: 57  A-SIQGIEYLT--NLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKIT--DISALQNL 109

Query: 533 QNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN 592
            N++ L L+ + ++    S   N +++  L+LG N    ++      +++ L  L++  +
Sbjct: 110 TNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPL--SNMTGLNYLTVTES 165

Query: 593 KFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKG 652
           K     P     L  L  L L+ N I    P    + T++                    
Sbjct: 166 KVKDVTPIA--NLTDLYSLSLNYNQIEDISP--LASLTSLH------------------- 202

Query: 653 SEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSL 712
                              N +       + ++  L +L +  N +T  +SP +  L  L
Sbjct: 203 -------------YFTAYVNQITD--ITPVANMTRLNSLKIGNNKITD-LSP-LANLSQL 245

Query: 713 DFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQS 758
            +L++  NQ+     +++  L+ L ++++  N +S  I  +  L  
Sbjct: 246 TWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DISVLNNLSQ 288

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.3 bits (173), Expect = 5e-13
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 47/223 (21%)

Query: 536 QTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH 595
            TL+     +         + ++     L K ++   +     E L ++  L +   K  
Sbjct: 3   ATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVTQ---EELESITKLVVAGEKVA 57

Query: 596 GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSER 655
             I   +  L  L+ L+L+ N I+   P   +N                           
Sbjct: 58  -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVK------------------------ 89

Query: 656 EYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFL 715
                   + +L +  N +       + +L  L  L L++++++      +  L  +  L
Sbjct: 90  --------LTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSL 137

Query: 716 DLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQS 758
           +L  N  +    S LS ++GL+ + ++ + +   +  +  L  
Sbjct: 138 NLGANHNLS-DLSPLSNMTGLNYLTVTESKVK-DVTPIANLTD 178

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (296), Expect = 4e-28
 Identities = 64/277 (23%), Positives = 109/277 (39%), Gaps = 22/277 (7%)

Query: 82  ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL 141
           A   L +LR L L  N     P+  F G LS L  LD+        +     +L  L+ L
Sbjct: 75  AFNNLFNLRTLGLRSNRLKLIPLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

Query: 142 DLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLAN-SSDWFQVIGKLHSLKTLSLHSCYLP 200
           ++G N L    +    S L+ L  L L++ NL +  ++       LH L  L L    + 
Sbjct: 134 EVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNIN 189

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPE-SF 259
            +   S   L     L+ L +S      ++ P      ++  S+ +    L  ++P  + 
Sbjct: 190 AIRDYSFKRL---YRLKVLEISHWPYLDTMTPNCLYGLNL-TSLSITHCNLT-AVPYLAV 244

Query: 260 QHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN-- 317
           +H+VYL  L LS+N +          +  L  + L   +        +  +         
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ--------LAVVEPYAFRGLN 296

Query: 318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLV 354
            L+ L +  +    + ES F ++ NL+ L L +NPL 
Sbjct: 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  114 bits (287), Expect = 6e-27
 Identities = 74/367 (20%), Positives = 136/367 (37%), Gaps = 54/367 (14%)

Query: 213 STSLETLVLSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLS 271
           S     ++       +     +P  I +    +DLG N+++    + F    +LE L L+
Sbjct: 10  SAQDRAVLCHRKRFVA-----VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELN 64

Query: 272 FNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTG 330
            N +    P  F N+ +L TL L +N+L      +   LS+      L  L + EN +  
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN------LTKLDISENKIV- 117

Query: 331 VISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQ 390
           ++ +  F ++ NLK L + +N LV                 +S         +     N 
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLV----------------YIS--------HRAFSGLNS 153

Query: 391 IELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-------GKLPNLSSRFGTSNPG 443
           +E L +    ++    +   +L      L L    I         +L  L     +  P 
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 444 ID-ISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLP 502
           +D ++ N   GL      N + L+++    + ++ +L       L +++LS N +S    
Sbjct: 213 LDTMTPNCLYGL------NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEG 265

Query: 503 DCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562
                   L  + L     +   P +   L  ++ L++  N+LT    S F +   L  L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 563 DLGKNAL 569
            L  N L
Sbjct: 326 ILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (280), Expect = 4e-26
 Identities = 75/307 (24%), Positives = 129/307 (42%), Gaps = 16/307 (5%)

Query: 444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPD 503
           +      F  +   +P+ +  L+L KNR   +++     S   L  ++L+ N++S   P 
Sbjct: 16  VLCHRKRFVAVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPG 74

Query: 504 CWWTFDSLVILNLENNSFSGRIPDSM-GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562
            +    +L  L L +N     IP  +   L N+  L +  N++   L   F++   L+ L
Sbjct: 75  AFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

Query: 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ-LCQLAFLQVLDLSLNNISGK 621
           ++G N L   I       L++L  L+L+       IP + L  L  L VL L   NI+  
Sbjct: 134 EVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-A 190

Query: 622 IPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEE 681
           I     +F  + + +  + +    L              L L  SL +++ NL       
Sbjct: 191 IRDY--SFKRLYRLKVLEISHWPYLDTMTPNCLY----GLNL-TSLSITHCNLTAVPYLA 243

Query: 682 IMDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMD 740
           +  LV L  LNLS N ++  I   +  +L  L  + L   QL    P +   L+ L V++
Sbjct: 244 VRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302

Query: 741 LSYNNLS 747
           +S N L+
Sbjct: 303 VSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (272), Expect = 5e-25
 Identities = 61/270 (22%), Positives = 105/270 (38%), Gaps = 22/270 (8%)

Query: 88  DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQ-LGNLSRLQHLDLGSN 146
           + R L+L  N        EF      L  L+L   + +  + P    NL  L+ L L SN
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSN 90

Query: 147 YLFSTGNLDWLSHLSYLRYLNLDESNLAN-SSDWFQVIGKLHSLKTLSLHSCYLPPVIPL 205
            L     L   + LS L  L++ E+ +       FQ    L++LK+L +    L  +   
Sbjct: 91  RL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDNDLVYISHR 146

Query: 206 SLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYL 265
           + + L    SLE L L   NLTS     L ++  + I + L    +      SF+ +  L
Sbjct: 147 AFSGL---NSLEQLTLEKCNLTSIPTEALSHLHGL-IVLRLRHLNINAIRDYSFKRLYRL 202

Query: 266 EHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLY 323
           + L +S       +        +L +L++++  L+         +    + +   L+ L 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT--------AVPYLAVRHLVYLRFLN 254

Query: 324 LENSLTGVISESFFSNISNLKELHLANNPL 353
           L  +    I  S    +  L+E+ L    L
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.8 bits (223), Expect = 7e-19
 Identities = 59/413 (14%), Positives = 118/413 (28%), Gaps = 92/413 (22%)

Query: 287 CSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKEL 346
                +         +   + + + +       + L L  +    +++  F++  +L+EL
Sbjct: 11  AQDRAVLCHRK----RFVAVPEGIPT-----ETRLLDLGKNRIKTLNQDEFASFPHLEEL 61

Query: 347 HLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIP 406
            L  N               +  +           P        +  L + +  +     
Sbjct: 62  ELNEN--------------IVSAVE----------PGAFNNLFNLRTLGLRSNRLKLIPL 97

Query: 407 DWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLN 466
             F  LSN  + LD++ N+I                   +    F+ L      N   L 
Sbjct: 98  GVFTGLSN-LTKLDISENKIV-----------------ILLDYMFQDL-----YNLKSLE 134

Query: 467 LSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIP 526
           +  N     IS       + L  + L    L+    +       L++L L + + +    
Sbjct: 135 VGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 527 DSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIV 586
            S   L  ++ L + +      ++ +      L  L +    L   +P      L  L  
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRF 252

Query: 587 LSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKL 646
           L+L  N         L +L  LQ + L    ++  +      F  +              
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEP--YAFRGLNY------------ 297

Query: 647 MLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHL 698
                            ++ L +S N L   + E +   +  L  L L  N L
Sbjct: 298 -----------------LRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.1 bits (198), Expect = 7e-16
 Identities = 52/246 (21%), Positives = 83/246 (33%), Gaps = 40/246 (16%)

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
                 +      F   +P+  G     + L L  NR+       F +   L  L+L +N
Sbjct: 10  SAQDRAVLCHRKRFV-AVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ-LAFLQVLDLSLNNISGKIPKCF 626
            +   +      +L NL  L L+SN+    IP  +   L+ L  LD+S N I   +   F
Sbjct: 67  IV-SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 627 NNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLV 686
            +                                   +KSLE+ +N+L          L 
Sbjct: 125 QDLYN--------------------------------LKSLEVGDNDLVYISHRAFSGLN 152

Query: 687 GLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNN 745
            L  L L K +LT  I  +    L  L  L L    +      S  +L  L V+++S+  
Sbjct: 153 SLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 746 LSGKIP 751
               + 
Sbjct: 212 YLDTMT 217

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  109 bits (274), Expect = 4e-26
 Identities = 69/388 (17%), Positives = 125/388 (32%), Gaps = 98/388 (25%)

Query: 215 SLETLVLSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFN 273
            L  +  SD  L       +P ++      +DL  N++       F+++  L  L L  N
Sbjct: 32  HLRVVQCSDLGLEK-----VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86

Query: 274 ELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVI 332
           ++    P  F  +  L  L LS N+L          L     +  L+ L + EN +T  +
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLK--------ELPEKMPKT-LQELRVHENEIT-KV 136

Query: 333 SESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIE 392
            +S F+ ++ +  + L  N     L    +                       Q   ++ 
Sbjct: 137 RKSVFNGLNQMIVVELGTN----PLKSSGIE------------------NGAFQGMKKLS 174

Query: 393 LLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFE 452
            + I++T I+        +L+     L L  N+I                   + +   +
Sbjct: 175 YIRIADTNITTIPQGLPPSLTE----LHLDGNKIT-----------------KVDAASLK 213

Query: 453 GLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLV 512
           GL                              + L  + LS N +S            L 
Sbjct: 214 GL------------------------------NNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 513 ILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFR------NCSQLRLLDLGK 566
            L+L NN    ++P  +   + IQ + LHNN ++   S+ F         +    + L  
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 567 NAL-YGEIPTWMGESLSNLIVLSLKSNK 593
           N + Y EI       +     + L + K
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.6 bits (241), Expect = 8e-22
 Identities = 57/281 (20%), Positives = 95/281 (33%), Gaps = 33/281 (11%)

Query: 82  ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL 141
               L +L  L L  N  S      F   L KL  L L        +P ++     LQ L
Sbjct: 71  DFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSKNQLKE-LPEKM--PKTLQEL 126

Query: 142 DLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANS---SDWFQVIGKLHSLKTLSLHSC- 197
            +  N +         + L+ +  + L  + L +S   +  FQ    +  L  + +    
Sbjct: 127 RVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQ---GMKKLSYIRIADTN 182

Query: 198 --YLPPVIPLSLNHLNSSTSLETLVLSDNNLTS---SIYPWLPNISSIFISIDLGFNQLQ 252
              +P  +P          SL  L L  N +T    +    L N++     + L FN + 
Sbjct: 183 ITTIPQGLP---------PSLTELHLDGNKITKVDAASLKGLNNLA----KLGLSFNSIS 229

Query: 253 GSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSS 312
                S  +  +L  L L+ N+L   +P    +   +  + L NN +S   S        
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 313 GCLENSLKSLYLE-NSLTGV-ISESFFSNISNLKELHLANN 351
              + S   + L  N +    I  S F  +     + L N 
Sbjct: 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 57/312 (18%), Positives = 106/312 (33%), Gaps = 49/312 (15%)

Query: 444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPD 503
           +  S    E +   LP +++ L+L  N+ +  I      +   L  + L +N +S   P 
Sbjct: 36  VQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPG 94

Query: 504 CWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD 563
            +     L  L L  N     +P+     + +Q L +H N +T    S F   +Q+ +++
Sbjct: 95  AFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151

Query: 564 LGKNALY-GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI 622
           LG N L    I     + +  L  + +        IP  L     L  L L  N I+ K+
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KV 207

Query: 623 PK-CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEE 681
                     +                                  L LS N+++      
Sbjct: 208 DAASLKGLNNL--------------------------------AKLGLSFNSISAVDNGS 235

Query: 682 IMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL------VGGIPSSLSQLSG 735
           + +   L  L+L+ N L  ++   +   K +  + L  N +          P   ++ + 
Sbjct: 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 736 LSVMDLSYNNLS 747
            S + L  N + 
Sbjct: 295 YSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 71/368 (19%), Positives = 116/368 (31%), Gaps = 79/368 (21%)

Query: 388 QNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDIS 447
           Q  + ++  S+ G+   +P    +L    + LDL +N+I                  +I 
Sbjct: 30  QCHLRVVQCSDLGLE-KVPK---DLPPDTALLDLQNNKIT-----------------EIK 68

Query: 448 SNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWT 507
              F+ L      N   L L  N+ S  IS        KL  + LS N L  +LP+    
Sbjct: 69  DGDFKNL-----KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEK--M 119

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGEL--SSSFRNCSQLRLLDLG 565
             +L  L +  N  +         L  +  + L  N L      + +F+   +L  + + 
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ-LCQLAFLQVLDLSLNNISGKIPK 624
              +   IP        +L  L L  NK   K+    L  L  L  L LS N+IS     
Sbjct: 180 DTNI-TTIPQ---GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 625 CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD 684
              N   +                                  L L+NN L   VP  + D
Sbjct: 235 SLANTPHLR--------------------------------ELHLNNNKLV-KVPGGLAD 261

Query: 685 LVGLVALNLSKNHLTG------QISPKIGQLKSLDFLDLSRNQL-VGGIPSSL-SQLSGL 736
              +  + L  N+++              +  S   + L  N +    I  S    +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 737 SVMDLSYN 744
           + + L   
Sbjct: 322 AAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 8e-18
 Identities = 71/386 (18%), Positives = 125/386 (32%), Gaps = 89/386 (23%)

Query: 88  DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNY 147
            LR +  S        +P+ +        LDL              NL  L  L L +N 
Sbjct: 32  HLRVVQCSDLGLEK--VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 148 LFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSL 207
           + S  +    + L  L  L L ++ L    +         +L+ L +H   +  V     
Sbjct: 88  I-SKISPGAFAPLVKLERLYLSKNQLKELPE-----KMPKTLQELRVHENEITKVRKSVF 141

Query: 208 NHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEH 267
           N L     +  + L  N L SS                            +FQ M  L +
Sbjct: 142 NGL---NQMIVVELGTNPLKSSGIE-----------------------NGAFQGMKKLSY 175

Query: 268 LRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYLE 325
           +R++   +   IP+  G   SL  L+L  NK        I  + +  L+   +L  L L 
Sbjct: 176 IRIADTNIT-TIPQ--GLPPSLTELHLDGNK--------ITKVDAASLKGLNNLAKLGLS 224

Query: 326 NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWL 385
            +    +     +N  +L+ELHL NN LV K+         + ++ L +           
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN----------- 272

Query: 386 QTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGID 445
              N I  +  +        P +    ++ +S + L SN ++                 +
Sbjct: 273 ---NNISAIGSN----DFCPPGYNTKKAS-YSGVSLFSNPVQ---------------YWE 309

Query: 446 ISSNHFEGLIPPLPSNSSFLNLSKNR 471
           I  + F  +        + + L   +
Sbjct: 310 IQPSTFRCV-----YVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.0 bits (203), Expect = 6e-17
 Identities = 69/365 (18%), Positives = 119/365 (32%), Gaps = 102/365 (27%)

Query: 263 VYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLK 320
           V    L L   ++   +P           L+L NNK        I  +  G  +N  +L 
Sbjct: 36  VQCSDLGLE--KVPKDLPP------DTALLDLQNNK--------ITEIKDGDFKNLKNLH 79

Query: 321 SLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPH 380
           +L L N+    IS   F+ +  L+ L+L+ N L                      ++   
Sbjct: 80  TLILINNKISKISPGAFAPLVKLERLYLSKNQLK---------------------ELPEK 118

Query: 381 FPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTS 440
            PK LQ       L +    I+      F  L+     ++L +N +K             
Sbjct: 119 MPKTLQE------LRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKS------------ 159

Query: 441 NPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGK 500
                I +  F+G+                               KL+Y+ ++   ++  
Sbjct: 160 ---SGIENGAFQGM------------------------------KKLSYIRIADTNIT-T 185

Query: 501 LPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLR 560
           +P       SL  L+L+ N  +     S+  L N+  L L  N ++   + S  N   LR
Sbjct: 186 IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 561 LLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHG------KIPFQLCQLAFLQVLDLS 614
            L L  N L  ++P  +      + V+ L +N            P    + A    + L 
Sbjct: 244 ELHLNNNKLV-KVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 615 LNNIS 619
            N + 
Sbjct: 302 SNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 34/247 (13%)

Query: 510 SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNAL 569
            L ++   +     ++P       +   L L NN++T      F+N   L  L L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 570 YGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNF 629
             +I       L  L  L L  N+   ++P ++     LQ L +  N I+ K+ K  + F
Sbjct: 89  -SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRK--SVF 141

Query: 630 TAMTQERS--------SDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEE 681
             + Q               I++                +  +  + +++ N+   +P+ 
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAF-----------QGMKKLSYIRIADTNIT-TIPQG 189

Query: 682 IMDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMD 740
           +     L  L+L  N +T ++       L +L  L LS N +      SL+    L  + 
Sbjct: 190 L--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 741 LSYNNLS 747
           L+ N L 
Sbjct: 247 LNNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 40/174 (22%)

Query: 582 SNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPT 641
            +  +L L++NK           L  L  L L  N IS   P  F               
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP------------- 98

Query: 642 IKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQ 701
                              L  ++ L LS N L   +PE++     L  L + +N +T +
Sbjct: 99  -------------------LVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-K 135

Query: 702 ISPKI-GQLKSLDFLDLSRNQL-VGGIPS-SLSQLSGLSVMDLSYNNLSGKIPT 752
           +   +   L  +  ++L  N L   GI + +   +  LS + ++  N++  IP 
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (276), Expect = 6e-26
 Identities = 62/370 (16%), Positives = 126/370 (34%), Gaps = 33/370 (8%)

Query: 254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSG 313
            I  + Q+      + +     +         + +   +   N+ +    + ++ +    
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ- 70

Query: 314 CLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS 373
                ++ L L +     I    F+    +++L++  N +     H +     L ++ L 
Sbjct: 71  -----VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK----GK 429
              +            ++  L +SN  +     D F   ++    L L+SN++       
Sbjct: 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHVDLSL 184

Query: 430 LPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTY 489
           +P+L           ++S N    L   +P     L+ S N     I+ +      +LT 
Sbjct: 185 IPSLFH--------ANVSYNLLSTL--AIPIAVEELDASHNS----INVVRGPVNVELTI 230

Query: 490 VDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGEL 549
           + L  N L+         +  LV ++L  N     +      +Q ++ L + NNRL   L
Sbjct: 231 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 287

Query: 550 SSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQ 609
           +   +    L++LDL  N L   +          L  L L  N     +         L+
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIV-TLKLST--HHTLK 342

Query: 610 VLDLSLNNIS 619
            L LS N+  
Sbjct: 343 NLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (271), Expect = 2e-25
 Identities = 72/423 (17%), Positives = 140/423 (33%), Gaps = 65/423 (15%)

Query: 186 LHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISID 245
            +      +H       +      +    + + +   ++ +   +   L +       ++
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITL-NNQKIVTFKNSTMRK-LPAALLDSFRQVELLN 75

Query: 246 LGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSE 305
           L   Q++     +F +   ++ L + FN +    P  F N+  L  L L  N LS     
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

Query: 306 IIQNLSSGCLENSLKSLYLE-NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPP 364
           I  N         L +L +  N+L   I +  F   ++L+ L L++N L   +    +P 
Sbjct: 136 IFHNTP------KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP- 186

Query: 365 FQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASN 424
             L   ++S   +       L     +E LD S+  I+         L    + L L  N
Sbjct: 187 -SLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVEL----TILKLQHN 236

Query: 425 QIK-----GKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFL 479
            +         P L          +D+S N  E +         F+ +            
Sbjct: 237 NLTDTAWLLNYPGLVE--------VDLSYNELEKI-----MYHPFVKM------------ 271

Query: 480 CSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLS 539
                 +L  + +S+N L   L        +L +L+L +N     +  +      ++ L 
Sbjct: 272 -----QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 540 LHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP 599
           L +N +    +        L+ L L  N         +     N+   ++     H KI 
Sbjct: 325 LDHNSIV---TLKLSTHHTLKNLTLSHNDW---DCNSLRALFRNVARPAVDDADQHCKID 378

Query: 600 FQL 602
           +QL
Sbjct: 379 YQL 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (265), Expect = 1e-24
 Identities = 66/373 (17%), Positives = 126/373 (33%), Gaps = 33/373 (8%)

Query: 54  SNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSK 113
              +N         +  D            + L++ + +    +     P    + S  +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQ 70

Query: 114 LRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNL 173
           +  L+L                  +Q L +G N +          ++  L  L L+ ++L
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDL 129

Query: 174 ANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPW 233
           ++      +      L TLS+ +  L  +   +       TSL+ L LS N LT      
Sbjct: 130 SSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHVDLSL 184

Query: 234 LPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN 293
           +P++       ++ +N L      +    + +E L  S N +             L  L 
Sbjct: 185 IPSLF----HANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE---LTILK 232

Query: 294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
           L +N L+   +  + N         L  + L  +    I    F  +  L+ L+++NN L
Sbjct: 233 LQHNNLTD--TAWLLNYP------GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 354 VLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLS 413
           V  L+    P   L ++ LS   +  H  +     +++E L + +  I          L 
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK 342

Query: 414 NKFSFLDLASNQI 426
           N    L L+ N  
Sbjct: 343 N----LTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (260), Expect = 7e-24
 Identities = 74/434 (17%), Positives = 143/434 (32%), Gaps = 76/434 (17%)

Query: 343 LKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGIS 402
             ++H+      +    + +      I++  +  +       L +  Q+ELL++++  I 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 403 DTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNS 462
           +     F         L +  N I+                  +  + F+ +        
Sbjct: 83  EIDTYAFAYAHT-IQKLYMGFNAIR-----------------YLPPHVFQNV-----PLL 119

Query: 463 SFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFS 522
           + L L +N  S S+      +  KLT + +S+N L     D +    SL  L L +N  +
Sbjct: 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

Query: 523 GRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLS 582
             +  S+  + ++   ++  N L+     +      +  LD   N++   +    G    
Sbjct: 179 -HVDLSL--IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI-NVVR---GPVNV 226

Query: 583 NLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 642
            L +L L+ N       + L     L  +DLS N +   +   F     + +        
Sbjct: 227 ELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER-------- 276

Query: 643 KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQI 702
                                   L +SNN L  A+      +  L  L+LS NHL   +
Sbjct: 277 ------------------------LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 310

Query: 703 SPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDT 762
                Q   L+ L L  N +V  +   LS    L  + LS+N+           ++    
Sbjct: 311 ERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC-NSLRALFRNVARP 366

Query: 763 VYAGNPELCGLPLP 776
                 + C +   
Sbjct: 367 AVDDADQHCKIDYQ 380

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  101 bits (254), Expect = 3e-23
 Identities = 57/364 (15%), Positives = 117/364 (32%), Gaps = 54/364 (14%)

Query: 388 QNQIELLDISNTGISDTIPDWFWNLS-NKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDI 446
           Q      D+     +  +   F +++ N    +   ++ ++                  +
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-----------------KL 60

Query: 447 SSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWW 506
            +   +            LNL+  +    I          +  + +  N +    P  + 
Sbjct: 61  PAALLDSF-----RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114

Query: 507 TFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGK 566
               L +L LE N  S            + TLS+ NN L      +F+  + L+ L L  
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 567 NALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCF 626
           N L   +       + +L   ++  N         L     ++ LD S N+I+       
Sbjct: 175 NRL-THVDL---SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN 225

Query: 627 NNFTAMTQER---SSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIM 683
              T +  +    +    + +                   +  ++LS N L   +    +
Sbjct: 226 VELTILKLQHNNLTDTAWLLN----------------YPGLVEVDLSYNELEKIMYHPFV 269

Query: 684 DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY 743
            +  L  L +S N L   ++     + +L  LDLS N L+  +  +  Q   L  + L +
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327

Query: 744 NNLS 747
           N++ 
Sbjct: 328 NSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.7 bits (249), Expect = 2e-22
 Identities = 55/291 (18%), Positives = 106/291 (36%), Gaps = 23/291 (7%)

Query: 458 LPSNSSFLNLSKNRFSGSISF-LCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNL 516
           L  +  F ++  +  +  + F    I+ +    V   ++ +         +F  + +LNL
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 517 ENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTW 576
            +         +  +   IQ L +  N +       F+N   L +L L +N L   +P  
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRG 135

Query: 577 MGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQER 636
           +  +   L  LS+ +N               LQ L LS N ++  +    +   ++    
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHAN 192

Query: 637 SSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKN 696
            S   +                +    V+ L+ S+N++N  V   +   V L  L L  N
Sbjct: 193 VSYNLLSTL-------------AIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHN 236

Query: 697 HLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
           +LT   +  +     L  +DLS N+L   +     ++  L  + +S N L 
Sbjct: 237 NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 39/237 (16%), Positives = 78/237 (32%), Gaps = 39/237 (16%)

Query: 525 IPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNL 584
           I  ++ +      + +                +  +++    + +  ++P  + +S   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQV 71

Query: 585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644
            +L+L   +      +       +Q L +  N I    P  F N   +T           
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT----------- 120

Query: 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISP 704
                                 L L  N+L+        +   L  L++S N+L  +I  
Sbjct: 121 ---------------------VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIED 158

Query: 705 KIGQ-LKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFN 760
              Q   SL  L LS N+L   +   LS +  L   ++SYN LS  +     ++  +
Sbjct: 159 DTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-TLAIPIAVEELD 211

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 43/264 (16%), Positives = 70/264 (26%), Gaps = 78/264 (29%)

Query: 86  LHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGS 145
           +  L H N+S+N  S       +     +  LD         +   +     L  L L  
Sbjct: 185 IPSLFHANVSYNLLS------TLAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQH 235

Query: 146 NYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPL 205
           N L       WL +   L  ++L  + L                               +
Sbjct: 236 NNLTD---TAWLLNYPGLVEVDLSYNELEK-----------------------------I 263

Query: 206 SLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYL 265
             +       LE L +S+N L                           ++    Q +  L
Sbjct: 264 MYHPFVKMQRLERLYISNNRLV--------------------------ALNLYGQPIPTL 297

Query: 266 EHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL- 324
           + L LS N L   + +       L  L L +N +          L        LK+L L 
Sbjct: 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV--------TLKLSTHHT-LKNLTLS 347

Query: 325 ENSLTGVISESFFSNISNLKELHL 348
            N        + F N++       
Sbjct: 348 HNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 5/94 (5%)

Query: 78  TISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSR 137
            ++     +  L+ L+LS N      +        +L  L L        +         
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIV-TLKL--STHHT 340

Query: 138 LQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDES 171
           L++L L  N            +++     + D+ 
Sbjct: 341 LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (269), Expect = 1e-25
 Identities = 55/307 (17%), Positives = 110/307 (35%), Gaps = 28/307 (9%)

Query: 75  LRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGN 134
           L+  ++       +++ L+LS N  S       +   +KL  L+L   V        L +
Sbjct: 22  LKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYE--TLDLES 78

Query: 135 LSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSL 194
           LS L+ LDL +NY+        L     +  L+   +N++  S       +    K + L
Sbjct: 79  LSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRVS-----CSRGQGKKNIYL 127

Query: 195 HSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGS 254
            +  +  +  L        + ++ L L  N + +  +  L   S     ++L +N +   
Sbjct: 128 ANNKITMLRDLDEGCR---SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 255 IPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGC 314
           +         L+ L LS N+L   +   F +   +  ++L NNKL   + + ++      
Sbjct: 184 VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ--- 237

Query: 315 LENSLKSLYLE-NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS 373
              +L+   L  N         FFS    ++ +       +   + +      L      
Sbjct: 238 ---NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 374 SCKIGPH 380
            C+  P 
Sbjct: 295 CCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (267), Expect = 3e-25
 Identities = 59/358 (16%), Positives = 115/358 (32%), Gaps = 71/358 (19%)

Query: 254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSG 313
           +I E  Q+    +  +++ + L+  +     +  ++  L+LS N LS   +  +   +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-- 58

Query: 314 CLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISL 372
                L+ L L  N L   +      ++S L+ L L NN +                   
Sbjct: 59  ----KLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV------------------- 92

Query: 373 SSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPN 432
                     + L     IE L  +N  IS           N    + LA+N+I      
Sbjct: 93  ----------QELLVGPSIETLHAANNNISRVSCSRGQGKKN----IYLANNKIT----- 133

Query: 433 LSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISG-SKLTYVD 491
                        +             S   +L+L  N    +++F    +    L +++
Sbjct: 134 ------------MLRDLDEGCR-----SRVQYLDLKLNEID-TVNFAELAASSDTLEHLN 175

Query: 492 LSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSS 551
           L  N +   +      F  L  L+L +N  +  +         +  +SL NN+L   +  
Sbjct: 176 LQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 552 SFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQ 609
           + R    L   DL  N  +             +  ++ ++ K       + C +  L 
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (262), Expect = 1e-24
 Identities = 65/372 (17%), Positives = 126/372 (33%), Gaps = 59/372 (15%)

Query: 104 IPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYL 163
           I E   + ++ +   +  +     +     +   ++ LDL  N L S  +   L+  + L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKL 60

Query: 164 RYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSD 223
             LNL  + L  + D    +  L +L+TL L++          +  L    S+ETL  ++
Sbjct: 61  ELLNLSSNVLYETLD----LESLSTLRTLDLNNN--------YVQELLVGPSIETLHAAN 108

Query: 224 NNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG-GIPKF 282
           NN++               +I L  N++             +++L L  NE++     + 
Sbjct: 109 NNISRVSCSRGQGKK----NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 283 FGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNIS 341
             +  +L  LNL  N +         ++    +   LK+L L  N L  +  E  F + +
Sbjct: 165 AASSDTLEHLNLQYNFIY--------DVKGQVVFAKLKTLDLSSNKLAFMGPE--FQSAA 214

Query: 342 NLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGI 401
            +  + L NN LV                            K L+    +E  D+   G 
Sbjct: 215 GVTWISLRNNKLV-------------------------LIEKALRFSQNLEHFDLRGNGF 249

Query: 402 SDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSN 461
                  F++ + +   +   + +   KL   +    T        +   E    P P  
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCED--LPAPFA 304

Query: 462 SSFLNLSKNRFS 473
              + L  +   
Sbjct: 305 DRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (260), Expect = 2e-24
 Identities = 47/267 (17%), Positives = 93/267 (34%), Gaps = 30/267 (11%)

Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
           ++     ++ + L   L     +  ++  L+L  N  S      +     ++ L+L +N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ 604
           L    +    + S LR LDL  N +  E+         ++  L   +N    ++      
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNIS-RVSCSR-- 118

Query: 605 LAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTW----KGSEREYRST 660
               + + L+ N I+          + +             L L        +  E  ++
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQY-----------LDLKLNEIDTVNFAELAAS 167

Query: 661 LGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRN 720
              ++ L L  N +   V  +++    L  L+LS N L   + P+      + ++ L  N
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 721 QLVGGIPSSLSQLSGLSVMDLSYNNLS 747
           +LV  I  +L     L   DL  N   
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.5 bits (233), Expect = 6e-21
 Identities = 46/251 (18%), Positives = 84/251 (33%), Gaps = 46/251 (18%)

Query: 509 DSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNA 568
           +   I  + ++S    +        N++ L L  N L+   ++     ++L LL+L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 569 LYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNN 628
           LY E        LS L  L L +N        +L     ++ L  + NNIS ++      
Sbjct: 70  LY-ETLDLES--LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC---- 116

Query: 629 FTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGL 688
                                         S     K++ L+NN +      +      +
Sbjct: 117 ------------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 689 VALNLSKNHLTG-QISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
             L+L  N +     +       +L+ L+L  N +   +   +   + L  +DLS N L+
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204

Query: 748 GKIPTVTQLQS 758
              P       
Sbjct: 205 FMGPEFQSAAG 215

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 29/199 (14%), Positives = 72/199 (36%), Gaps = 43/199 (21%)

Query: 549 LSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFL 608
           +    +N ++ ++  +  ++L  +    + +S  N+  L L  N         L     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 609 QVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLE 668
           ++L+LS N +         + + +                                ++L+
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTL--------------------------------RTLD 86

Query: 669 LSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPS 728
           L+NN +     +E++    +  L+ + N+++ ++S   GQ      + L+ N++      
Sbjct: 87  LNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRGQ--GKKNIYLANNKITMLRDL 138

Query: 729 SLSQLSGLSVMDLSYNNLS 747
                S +  +DL  N + 
Sbjct: 139 DEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 655 REYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDF 714
            E +      K  ++++++L  A+         +  L+LS N L+   +  +     L+ 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 715 LDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFN 760
           L+LS N L       L  LS L  +DL+ N +  ++     +++ +
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLH 105

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 677 AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGL 736
           A+ E   +        ++ + L   ++       ++  LDLS N L     + L+  + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 737 SVMDLSYNNLSGKIPTVTQLQS 758
            +++LS N L  +   +  L +
Sbjct: 61  ELLNLSSNVLY-ETLDLESLST 81

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  110 bits (277), Expect = 2e-25
 Identities = 96/562 (17%), Positives = 182/562 (32%), Gaps = 80/562 (14%)

Query: 197 CYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSI 255
                 + +      S+     +  S+ NLT      +P ++     ++ L  N +    
Sbjct: 14  FVCALALIVGSMTPFSNELESMVDYSNRNLTH-----VPKDLPPRTKALSLSQNSISELR 68

Query: 256 PESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCL 315
                 +  L  LRLS N +       F     L  L++S+N+L        QN+S   +
Sbjct: 69  MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL--------QNISCCPM 120

Query: 316 ENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSS 374
            + L+ L L  N    +     F N++ L  L L+      +L    V    L  I L  
Sbjct: 121 AS-LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQLDLLPVAHLHLSCILLDL 178

Query: 375 CKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLS 434
                          + E L I NT +          L   F    L S Q+   +  L 
Sbjct: 179 VSYHIK-------GGETESLQIPNTTV----------LHLVFHPNSLFSVQVNMSVNALG 221

Query: 435 SRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGS----ISFLCSISGSKLTYV 490
               ++    D +       +  L    + LN++      +    +          + Y+
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 491 DLSSNLLSGKLPDCWWTF-----DSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRL 545
           ++ +  ++ ++    +T+      SL+I +++N  F             +    L  +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 546 TGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH--GKIPFQLC 603
                    + S    L+  +N    +       +L  L  L L+ N      K+     
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 604 QLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL 663
            ++ L+ LD+SLN+++         +                                  
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILV---------------------------- 432

Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723
              L LS+N L G+V   +     +  L+L  N +   I   +  L++L  L+++ NQL 
Sbjct: 433 ---LNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

Query: 724 GGIPSSLSQLSGLSVMDLSYNN 745
                   +L+ L  + L  N 
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (254), Expect = 1e-22
 Identities = 93/491 (18%), Positives = 163/491 (33%), Gaps = 65/491 (13%)

Query: 85  KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLG 144
            L +LR L LS N         F+     L YLD+        I      ++ L+HLDL 
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQN-ISC--CPMASLRHLDLS 129

Query: 145 SNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLH-SLKTLSLHSCYLPPVI 203
            N            +L+ L +L L  +           +  LH S   L L S ++    
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLPVAHLHLSCILLDLVSYHIKGGE 187

Query: 204 PLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI--FISIDLGFNQLQGSIPESFQH 261
             SL   N  T++  LV   N+L S       N        +I L     Q  +    + 
Sbjct: 188 TESLQIPN--TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 262 MVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG-QLSEIIQNLSSGCLENSLK 320
                 L ++   +E                 +    +    ++E I        E +LK
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305

Query: 321 SLYLENSLTGVIS---ESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKI 377
           SL +E+    V     E+ +S  + +    L+ +                      +  I
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS---------------------DTPFI 344

Query: 378 GPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRF 437
               P      +    L+ +    +D++      L      L L  N +K     ++   
Sbjct: 345 HMVCPPSP---SSFTFLNFTQNVFTDSVFQGCSTLKRL-QTLILQRNGLK-NFFKVALMT 399

Query: 438 GTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRF-SGSISFLCSISGSKLTYVDLSSNL 496
              +                   +   L++S N   S +    C+ +   +  ++LSSN+
Sbjct: 400 KNMS-------------------SLETLDVSLNSLNSHAYDRTCAWA-ESILVLNLSSNM 439

Query: 497 LSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNC 556
           L+G +  C      + +L+L NN     IP  +  LQ +Q L++ +N+L       F   
Sbjct: 440 LTGSVFRC--LPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496

Query: 557 SQLRLLDLGKN 567
           + L+ + L  N
Sbjct: 497 TSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.1 bits (174), Expect = 8e-13
 Identities = 59/323 (18%), Positives = 94/323 (29%), Gaps = 51/323 (15%)

Query: 464 FLNLSKNRFS----GSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENN 519
            L LS NR          F        L Y+D+S N L   +  C     SL  L+L  N
Sbjct: 80  VLRLSHNRIRSLDFHVFLFN-----QDLEYLDVSHNRLQ-NISCCP--MASLRHLDLSFN 131

Query: 520 SFSGRIPDSMGF--LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWM 577
            F   +P    F  L  +  L L   +            + L L  +  + +   I    
Sbjct: 132 DFD-VLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYHIKGGE 187

Query: 578 GESLS--NLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 635
            ESL   N  VL L  +            +  L  L LS   ++ +  +    F +    
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247

Query: 636 RSSDPTIK-DKLMLTWKGSEREYRST-LGLVKSLELSNNNLNGAVPEEIMD--------- 684
             +   +    +  TWK S + ++      V+ L + N  +   +  E            
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307

Query: 685 --------------------LVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724
                                  +    LS +              S  FL+ ++N    
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367

Query: 725 GIPSSLSQLSGLSVMDLSYNNLS 747
            +    S L  L  + L  N L 
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.1 bits (169), Expect = 3e-12
 Identities = 49/331 (14%), Positives = 98/331 (29%), Gaps = 38/331 (11%)

Query: 49  TGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFI 108
             L  S     ++   ++  + +S  +  T    L+   +           +     +  
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 109 GSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNL 168
                        T  +            LQH++             W   + YL   NL
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 169 DESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIP-------------LSLNHL----- 210
             +   +  ++      L SL    + +                     LS++       
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 211 ---NSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEH 267
               S +S   L  + N  T S++     +  +  ++ L  N L+ +  +       +  
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL-QTLILQRNGLK-NFFKVALMTKNMSS 404

Query: 268 LRLSFNEL----EGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLY 323
           L      L         +      S++ LNLS+N L              CL   +K L 
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML--------TGSVFRCLPPKVKVLD 456

Query: 324 L-ENSLTGVISESFFSNISNLKELHLANNPL 353
           L  N +  +      +++  L+EL++A+N L
Sbjct: 457 LHNNRIMSI--PKDVTHLQALQELNVASNQL 485

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (272), Expect = 1e-24
 Identities = 78/522 (14%), Positives = 161/522 (30%), Gaps = 68/522 (13%)

Query: 186 LHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISID 245
            +      +H       +      +    + + +   ++ +   +   L +       ++
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITL-NNQKIVTFKNSTMRK-LPAALLDSFRQVELLN 81

Query: 246 LGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSE 305
           L   Q++     +F +   ++ L + FN +    P  F N+  L  L L  N        
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND------- 134

Query: 306 IIQNLSSGCLEN--SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVP 363
            + +L  G   N   L +L + N+    I +  F   ++L+ L L++N L   +    +P
Sbjct: 135 -LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP 192

Query: 364 PFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLAS 423
              L   ++S   +       L     +E LD S+  I+         L    + L L  
Sbjct: 193 --SLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVEL----TILKLQH 241

Query: 424 NQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSIS 483
           N +                     +                ++LS N     I +   + 
Sbjct: 242 NNL-------------------TDTAWLLNY-----PGLVEVDLSYNELE-KIMYHPFVK 276

Query: 484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNN 543
             +L  + +S+N L   L        +L +L+L +N     +  +      ++ L L +N
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334

Query: 544 RLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLC 603
            +    +        L+ L L  N         +     N+   ++     H KI +QL 
Sbjct: 335 SIV---TLKLSTHHTLKNLTLSHNDW---DCNSLRALFRNVARPAVDDADQHCKIDYQLE 388

Query: 604 Q----------LAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGS 653
                           +  ++L ++  K+ +     +A     S                
Sbjct: 389 HGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPL 448

Query: 654 EREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSK 695
           +   +     V  L      L     ++   L GL A   + 
Sbjct: 449 QGNEQLEA-EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTN 489

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (265), Expect = 6e-24
 Identities = 62/370 (16%), Positives = 126/370 (34%), Gaps = 33/370 (8%)

Query: 254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSG 313
            I  + Q+      + +     +         + +   +   N+ +    + ++ +    
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR-- 75

Query: 314 CLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS 373
                ++ L L +     I    F+    +++L++  N +     H +     L ++ L 
Sbjct: 76  ----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

Query: 374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK----GK 429
              +            ++  L +SN  +     D F   ++    L L+SN++       
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHVDLSL 190

Query: 430 LPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTY 489
           +P+L           ++S N    L   +P     L+ S N     I+ +      +LT 
Sbjct: 191 IPSLFH--------ANVSYNLLSTL--AIPIAVEELDASHNS----INVVRGPVNVELTI 236

Query: 490 VDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGEL 549
           + L  N L+         +  LV ++L  N     +      +Q ++ L + NNRL   L
Sbjct: 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 293

Query: 550 SSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQ 609
           +   +    L++LDL  N L   +          L  L L  N     +         L+
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIV-TLKLS--THHTLK 348

Query: 610 VLDLSLNNIS 619
            L LS N+  
Sbjct: 349 NLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (259), Expect = 3e-23
 Identities = 68/374 (18%), Positives = 128/374 (34%), Gaps = 36/374 (9%)

Query: 53  CSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLS 112
            SN     +  D+     D            + L++ + +    +     P    + S  
Sbjct: 20  DSNLQYDCVFYDVHI---DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP-AALLDSFR 75

Query: 113 KLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESN 172
           ++  L+L                  +Q L +G N +          ++  L  L L+ ++
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERND 134

Query: 173 LANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYP 232
           L++      +      L TLS+ +  L  +   +       TSL+ L LS N LT     
Sbjct: 135 LSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHVDLS 189

Query: 233 WLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITL 292
            +P++       ++ +N L      +    + +E L  S N +             L  L
Sbjct: 190 LIPSLF----HANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE---LTIL 237

Query: 293 NLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNP 352
            L +N L+   +  + N         L  + L  +    I    F  +  L+ L+++NN 
Sbjct: 238 KLQHNNLTD--TAWLLNYP------GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 353 LVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNL 412
           LV  L+    P   L ++ LS   +  H  +     +++E L + +  I          L
Sbjct: 290 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL 347

Query: 413 SNKFSFLDLASNQI 426
            N    L L+ N  
Sbjct: 348 KN----LTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 4e-10
 Identities = 45/277 (16%), Positives = 86/277 (31%), Gaps = 49/277 (17%)

Query: 86  LHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGS 145
           +  L H N+S+N  S       +     +  LD         +         L  L L  
Sbjct: 191 IPSLFHANVSYNLLS------TLAIPIAVEELDASHNSINV-VRG--PVNVELTILKLQH 241

Query: 146 NYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPL 205
           N L       WL +   L  ++L  + L                               +
Sbjct: 242 NNLTD---TAWLLNYPGLVEVDLSYNELEK-----------------------------I 269

Query: 206 SLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYL 265
             +       LE L +S+N L  ++  +   I ++ + +DL  N L   +  +      L
Sbjct: 270 MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV-LDLSHNHLL-HVERNQPQFDRL 326

Query: 266 EHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG-QLSEIIQNLSSGCL-ENSLKSLY 323
           E+L L  N +   +        +L  L LS+N      L  + +N++   + +       
Sbjct: 327 ENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383

Query: 324 LENSLTGVISESFFSNISNLKELHLANNPLVLKLSHD 360
                 G+  +       +    ++A   +V K+   
Sbjct: 384 DYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRA 420

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 29/288 (10%), Positives = 78/288 (27%), Gaps = 17/288 (5%)

Query: 78  TISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSR 137
            ++     +  L+ L+LS N      +        +L  L L        +         
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIV-TLKL--STHHT 346

Query: 138 LQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDES--NLANSSDWFQVIGKLHSLKTLSLH 195
           L++L L  N            +++     + D+                         L 
Sbjct: 347 LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQ 406

Query: 196 SCYLPPVI---PLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQ 252
              L  V+     +    +++ ++ ++    + +T      L     +   ++    ++Q
Sbjct: 407 YIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466

Query: 253 GSIPESFQHMVYLEHLRLSFNE-------LEGGIPKFFGNMCSLITLNLSNNKLSGQLSE 305
               E  Q    L+ L    +         + G+ +   N+  + T          + ++
Sbjct: 467 QLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQ 526

Query: 306 IIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
             +  +    + +        +L   +           +E  L    +
Sbjct: 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (259), Expect = 4e-24
 Identities = 73/388 (18%), Positives = 124/388 (31%), Gaps = 99/388 (25%)

Query: 215 SLETLVLSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFN 273
            L  +  SD  L +     +P  IS     +DL  N +     + F+ + +L  L L  N
Sbjct: 34  HLRVVQCSDLGLKA-----VPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88

Query: 274 ELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVI 332
           ++     K F  +  L  L +S N     L EI  NL S     SL  L + +N +   +
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKN----HLVEIPPNLPS-----SLVELRIHDNRIR-KV 138

Query: 333 SESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIE 392
            +  FS + N+  + +  N     L +    P     + L                    
Sbjct: 139 PKGVFSGLRNMNCIEMGGN----PLENSGFEPGAFDGLKL-------------------N 175

Query: 393 LLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFE 452
            L IS   ++    D    L+     L L  N+I+                  I      
Sbjct: 176 YLRISEAKLTGIPKDLPETLNE----LHLDHNKIQ-----------------AIELEDLL 214

Query: 453 GLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLV 512
                                           SKL  + L  N +            +L 
Sbjct: 215 RY------------------------------SKLYRLGLGHNQIRMIENGSLSFLPTLR 244

Query: 513 ILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFR------NCSQLRLLDLGK 566
            L+L+NN  S R+P  +  L+ +Q + LH N +T    + F         +    + L  
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 567 NAL-YGEIPTWMGESLSNLIVLSLKSNK 593
           N + Y E+       +++ + +   + K
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 46/274 (16%), Positives = 81/274 (29%), Gaps = 44/274 (16%)

Query: 82  ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQ-LGNLSRLQH 140
           A   L  L+ L +S N      IP      S L  L +        +P      L  +  
Sbjct: 97  AFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNC 151

Query: 141 LDLGSNYLFSTG-NLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYL 199
           +++G N L ++G        L  L YL + E+ L              +L  L L    +
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPK-----DLPETLNELHLDHNKI 205

Query: 200 PPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESF 259
             +    L      + L  L L  N +       +                       S 
Sbjct: 206 QAIELEDLLRY---SKLYRLGLGHNQIRM-----IE--------------------NGSL 237

Query: 260 QHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSL 319
             +  L  L L  N+L   +P    ++  L  + L  N ++         +  G      
Sbjct: 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

Query: 320 KSLYLE-NSLTGV-ISESFFSNISNLKELHLANN 351
             + L  N +    +  + F  +++   +   N 
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.4 bits (204), Expect = 5e-17
 Identities = 54/311 (17%), Positives = 101/311 (32%), Gaps = 28/311 (9%)

Query: 444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPD 503
           +  S    + +   +  +++ L+L  N  S  +          L  + L +N +S     
Sbjct: 38  VQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEK 96

Query: 504 CWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD 563
            +     L  L +  N     IP       ++  L +H+NR+       F     +  ++
Sbjct: 97  AFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153

Query: 564 LGKNALY-GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI 622
           +G N L          + L  L  L +   K    IP  L     L  L L  N I   I
Sbjct: 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AI 208

Query: 623 PK-CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEE 681
                  ++ + +       I+     +           L  ++ L L NN L+  VP  
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--------LPTLRELHLDNNKLS-RVPAG 259

Query: 682 IMDLVGLVALNLSKNHLT----GQISP--KIGQLKSLDFLDLSRNQLVGGI--PSSLSQL 733
           + DL  L  + L  N++T        P     +    + + L  N +      P++   +
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 734 SGLSVMDLSYN 744
           +    +     
Sbjct: 320 TDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.0 bits (203), Expect = 6e-17
 Identities = 61/341 (17%), Positives = 114/341 (33%), Gaps = 74/341 (21%)

Query: 287 CSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKE 345
           C L  +  S+      L  + + +S          L L  N ++  + +  F  + +L  
Sbjct: 33  CHLRVVQCSDL----GLKAVPKEISP-----DTTLLDLQNNDIS-ELRKDDFKGLQHLYA 82

Query: 346 LHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTI 405
           L L NN              ++  I            K      +++ L IS   + +  
Sbjct: 83  LVLVNN--------------KISKIH----------EKAFSPLRKLQKLYISKNHLVEIP 118

Query: 406 PDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFL 465
           P+   +L      L +  N+I+                  +    F GL      N + +
Sbjct: 119 PNLPSSLVE----LRIHDNRIR-----------------KVPKGVFSGL-----RNMNCI 152

Query: 466 NLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRI 525
            +  N    S     +  G KL Y+ +S   L+  +P      ++L  L+L++N      
Sbjct: 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKD--LPETLNELHLDHNKIQAIE 209

Query: 526 PDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLI 585
            + +     +  L L +N++    + S      LR L L  N L   +P  +   L  L 
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQ 267

Query: 586 VLSLKSNKFHGKIP-------FQLCQLAFLQVLDLSLNNIS 619
           V+ L +N    K+            + A+   + L  N + 
Sbjct: 268 VVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 46/321 (14%), Positives = 106/321 (33%), Gaps = 53/321 (16%)

Query: 161 SYLRYLNLDESNLAN-SSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETL 219
                L+L  ++++    D F+    L  L  L L +  +  +   + + L     L+ L
Sbjct: 54  PDTTLLDLQNNDISELRKDDFK---GLQHLYALVLVNNKISKIHEKAFSPL---RKLQKL 107

Query: 220 VLSDNNLTSSIYPWLPNISSIFISI---DLGFNQLQGSIPESFQHMVYLEHLRLSFNEL- 275
            +S N+L       +P   ++  S+    +  N+++      F  +  +  + +  N L 
Sbjct: 108 YISKNHLVE-----IP--PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 276 EGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISES 335
             G      +   L  L +S  KL+         +     E  L  L+L+++    I   
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLT--------GIPKDLPET-LNELHLDHNKIQAIELE 211

Query: 336 FFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLD 395
                S L  L L +N + +  +        L  + L + K+    P  L     ++++ 
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270

Query: 396 ISNTGISDTIPDWFWNLSNKF-----SFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNH 450
           +    I+    + F  +         + + L +N +                  ++    
Sbjct: 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP---------------YWEVQPAT 315

Query: 451 FEGLIPPLPSNSSFLNLSKNR 471
           F  +     ++   +     +
Sbjct: 316 FRCV-----TDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 56/352 (15%), Positives = 112/352 (31%), Gaps = 68/352 (19%)

Query: 88  DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNY 147
            LR +  S        +P+ I        LDL     +         L  L  L L +N 
Sbjct: 34  HLRVVQCSDLGLKA--VPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 148 LFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSL 207
           +         S L  L+ L + +++L              SL  L +H   +  V     
Sbjct: 90  ISKIHE-KAFSPLRKLQKLYISKNHLVEIPP-----NLPSSLVELRIHDNRIRKVPKGVF 143

Query: 208 NHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIF-----ISIDLGFNQLQGSIPESFQHM 262
           + L    ++  + +  N L +S +         F       + +   +L G   +  +  
Sbjct: 144 SGL---RNMNCIEMGGNPLENSGFE-----PGAFDGLKLNYLRISEAKLTGIPKDLPET- 194

Query: 263 VYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLK 320
             L  L L  N+++    +       L  L L +N++          + +G L    +L+
Sbjct: 195 --LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR--------MIENGSLSFLPTLR 244

Query: 321 SLYLE-NSLTGVISESFFSNISNLKELHLANNPL------VLKLSHDWVPPFQLIIISLS 373
            L+L+ N L+ V   +   ++  L+ ++L  N +              V       ISL 
Sbjct: 245 ELHLDNNKLSRV--PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302

Query: 374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQ 425
           +              N +   ++         P  F  +++    +   + +
Sbjct: 303 N--------------NPVPYWEVQ--------PATFRCVTD-RLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 53/263 (20%), Positives = 91/263 (34%), Gaps = 43/263 (16%)

Query: 487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT 546
            T +DL +N +S    D +     L  L L NN  S     +   L+ +Q L +  N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 547 GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKF-HGKIPFQLCQL 605
               +   +   L  L +  N +  ++P  +   L N+  + +  N   +          
Sbjct: 116 EIPPNLPSS---LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 606 AFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVK 665
             L  L +S   ++  IPK  +    + +                               
Sbjct: 172 LKLNYLRISEAKLT-GIPK--DLPETLNE------------------------------- 197

Query: 666 SLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVG 724
            L L +N +     E+++    L  L L  N +   I       L +L  L L  N+L  
Sbjct: 198 -LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSR 255

Query: 725 GIPSSLSQLSGLSVMDLSYNNLS 747
            +P+ L  L  L V+ L  NN++
Sbjct: 256 -VPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 47/239 (19%), Positives = 80/239 (33%), Gaps = 43/239 (17%)

Query: 510 SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNAL 569
            L ++   +      +P       +   L L NN ++      F+    L  L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPK--EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 570 YGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNF 629
             +I       L  L  L +  N    +IP  L   + L  L +  N I  K+PK    F
Sbjct: 91  -SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPK--GVF 143

Query: 630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNL-NGAVPEEIMDLVGL 688
           + +                               +  +E+  N L N        D + L
Sbjct: 144 SGLRN-----------------------------MNCIEMGGNPLENSGFEPGAFDGLKL 174

Query: 689 VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
             L +S+  LT  I   +   ++L+ L L  N++       L + S L  + L +N + 
Sbjct: 175 NYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 43/220 (19%), Positives = 66/220 (30%), Gaps = 33/220 (15%)

Query: 82  ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL 141
               L ++  + +  N    S          KL YL +      G IP  L     L  L
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNEL 198

Query: 142 DLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLAN-SSDWFQVIGKLHSLKTLSLHSCYLP 200
            L  N + +    D L   S L  L L  + +    +        L +L+ L L +  L 
Sbjct: 199 HLDHNKIQAIELED-LLRYSKLYRLGLGHNQIRMIENGSLS---FLPTLRELHLDNNKL- 253

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQ 260
             +P  L  L     L+ + L  NN+T                  +G N           
Sbjct: 254 SRVPAGLPDL---KLLQVVYLHTNNITK-----------------VGVNDFCP--VGFGV 291

Query: 261 HMVYLEHLRLSFNELEGGI--PKFFGNMCSLITLNLSNNK 298
              Y   + L  N +      P  F  +   + +   N K
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (251), Expect = 3e-23
 Identities = 58/308 (18%), Positives = 98/308 (31%), Gaps = 49/308 (15%)

Query: 455 IPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWW--TFDSLV 512
           + P     S      N            + S    ++  +        D     T    V
Sbjct: 25  LRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRV 84

Query: 513 ILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGE 572
            L L +     + PD    L ++Q +++    L  EL  + +  + L  L L +N L   
Sbjct: 85  ALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RA 141

Query: 573 IPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAF---------LQVLDLSLNNISGKIP 623
           +P  +  SL+ L  LS+++     ++P  L              LQ L L    I   +P
Sbjct: 142 LPASIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 624 KCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIM 683
               N   +                                KSL++ N+ L+ A+   I 
Sbjct: 200 ASIANLQNL--------------------------------KSLKIRNSPLS-ALGPAIH 226

Query: 684 DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY 743
            L  L  L+L          P  G    L  L L     +  +P  + +L+ L  +DL  
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 744 NNLSGKIP 751
                ++P
Sbjct: 287 CVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.7 bits (244), Expect = 3e-22
 Identities = 37/243 (15%), Positives = 81/243 (33%), Gaps = 19/243 (7%)

Query: 78  TISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSR 137
                  +L  L+H+ +         +P+ +   + L  L L        +P  + +L+R
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRA-LPASIASLNR 151

Query: 138 LQHLDLGSNYLFST--------GNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSL 189
           L+ L + +    +                 L  L+ L L+ + + +       I  L +L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS---IANLQNL 208

Query: 190 KTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFN 249
           K+L + +  L   +  +++HL     LE L L       +  P     + +   I    +
Sbjct: 209 KSLKIRNSPLS-ALGPAIHHL---PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 250 QLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQN 309
            L  ++P     +  LE L L        +P     + +   + +  +  +         
Sbjct: 265 NLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

Query: 310 LSS 312
             +
Sbjct: 324 RPA 326

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.6 bits (241), Expect = 7e-22
 Identities = 46/281 (16%), Positives = 91/281 (32%), Gaps = 55/281 (19%)

Query: 83  LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLD 142
               ++ +    +      +       +      L+L         P Q   LS LQH+ 
Sbjct: 52  QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMT 110

Query: 143 LGSNYLFSTGNL-DWLSHLSYLRYLNLDESNLAN--SSDWFQVIGKLHSLKTLSLHSC-- 197
           + +  L     L D +   + L  L L  + L    +S     I  L+ L+ LS+ +C  
Sbjct: 111 IDAAGLME---LPDTMQQFAGLETLTLARNPLRALPAS-----IASLNRLRELSIRACPE 162

Query: 198 --YLPPVI--PLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQG 253
              LP  +    +        +L++L L    +                           
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-------------------------- 196

Query: 254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSG 313
           S+P S  ++  L+ L++  + L   +     ++  L  L+L           I    +  
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-- 253

Query: 314 CLENSLKSLYLE--NSLTGVISESFFSNISNLKELHLANNP 352
                LK L L+  ++L  +  +     ++ L++L L    
Sbjct: 254 ----PLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 3e-19
 Identities = 38/271 (14%), Positives = 69/271 (25%), Gaps = 58/271 (21%)

Query: 493 SSNLLSGKLPDCWWTFDSLVILNLENNSFSG--RIPDSMGFLQ--NIQTLSLHNNRLTGE 548
                        W   +     +E  +        D +          L L +  L  +
Sbjct: 37  RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-Q 95

Query: 549 LSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFL 608
                   S L+ + +    L  E+P  M    + L  L+L  N     +P  +  L  L
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGL-MELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRL 152

Query: 609 QVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLE 668
           + L +       ++P+   +  A                                     
Sbjct: 153 RELSIRACPELTELPEPLASTDA------------------------------------- 175

Query: 669 LSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPS 728
                       E   LV L +L L    +   +   I  L++L  L +  + L   +  
Sbjct: 176 ----------SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGP 223

Query: 729 SLSQLSGLSVMDLSYNNLSGKIP-TVTQLQS 758
           ++  L  L  +DL         P        
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 44/327 (13%), Positives = 102/327 (31%), Gaps = 39/327 (11%)

Query: 318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKI 377
             ++LY + S        +   +S  +  + A+                   I   + + 
Sbjct: 13  GRENLYFQGSTA---LRPYHDVLSQWQRHYNADRNRWHSAWR--QANSNNPQIETRTGRA 67

Query: 378 GPHFPKWLQTQNQIEL--LDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK------GK 429
                  L+   Q     L++ +  +    PD  + LS+    + + +  +        +
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAGLMELPDTMQQ 125

Query: 430 LPNLSSRFGTSNPGIDISSNHFEGL---IPPLPSNSSFLNLSK-NRFS------GSISFL 479
              L +        + ++ N    L   I  L +    L++      +       S    
Sbjct: 126 FAGLET--------LTLARNPLRALPASIASL-NRLRELSIRACPELTELPEPLASTDAS 176

Query: 480 CSISG-SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTL 538
               G   L  + L    +   LP       +L  L + N+  S  +  ++  L  ++ L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234

Query: 539 SLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKI 598
            L            F   + L+ L L   +    +P  +   L+ L  L L+      ++
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRL 293

Query: 599 PFQLCQLAFLQVLDLSLNNISGKIPKC 625
           P  + QL    ++ +   ++  ++ + 
Sbjct: 294 PSLIAQLPANCIILVP-PHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.6 bits (210), Expect = 8e-18
 Identities = 62/360 (17%), Positives = 116/360 (32%), Gaps = 46/360 (12%)

Query: 105 PEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLR 164
                  S    L   G+    P    L    R  + D    +          ++ +  +
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-----QANSNNPQ 59

Query: 165 YLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDN 224
                   L  ++D  +          L L S  L P  P     L   + L+ + +   
Sbjct: 60  IETRTGRALKATADLLE-DATQPGRVALELRSVPL-PQFPDQAFRL---SHLQHMTIDAA 114

Query: 225 NLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFG 284
            L                            +P++ Q    LE L L+ N L   +P    
Sbjct: 115 GLM--------------------------ELPDTMQQFAGLETLTLARNPLR-ALPASIA 147

Query: 285 NMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN---SLKSLYL-ENSLTGVISESFFSNI 340
           ++  L  L++       +L E + +  +        +L+SL L    +  + +    +N+
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS--IANL 205

Query: 341 SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTG 400
            NLK L + N+PL   L        +L  + L  C    ++P     +  ++ L + +  
Sbjct: 206 QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 401 ISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPS 460
              T+P     L+     LDL       +LP+L ++   +N  I +  +    L    P 
Sbjct: 265 NLLTLPLDIHRLTQ-LEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 4e-17
 Identities = 53/364 (14%), Positives = 103/364 (28%), Gaps = 52/364 (14%)

Query: 253 GSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSS 312
           GS      H    E+L    +                   + +    + + +        
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS------ 55

Query: 313 GCLENSLKSLYLE-NSLTGVISESFFSNISNLKELHLANNPL------VLKLSHDWVPPF 365
               N+ +       +L         +       L L + PL        +LSH      
Sbjct: 56  ----NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH------ 105

Query: 366 QLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQ 425
            L  +++ +  +    P  +Q    +E L ++   +   +P    +L+     L + +  
Sbjct: 106 -LQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR-LRELSIRACP 161

Query: 426 IKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSG---SISFLCSI 482
              +LP              ++S    G    L  N   L L          SI+ L   
Sbjct: 162 ELTELPE------------PLASTDASGEHQGL-VNLQSLRLEWTGIRSLPASIANL--- 205

Query: 483 SGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSL-H 541
               L  + + ++ LS  L         L  L+L   +     P   G    ++ L L  
Sbjct: 206 --QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 542 NNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ 601
            + L   L       +QL  LDL        +P+ +   L    ++ +  +        +
Sbjct: 263 CSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQAQLDQHR 320

Query: 602 LCQL 605
               
Sbjct: 321 PVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.9 bits (203), Expect = 6e-17
 Identities = 52/328 (15%), Positives = 93/328 (28%), Gaps = 40/328 (12%)

Query: 392 ELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHF 451
           E L    +       D            D        +  N ++    +  G  + +   
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRH-YNADRNRWHSAWRQANSNNPQIETRTGRALKA--T 71

Query: 452 EGLIPPLPS-NSSFLNLSKNRFS---GSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWT 507
             L+          L L              L     S L ++ + +  L  +LPD    
Sbjct: 72  ADLLEDATQPGRVALELRSVPLPQFPDQAFRL-----SHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSL-HNNRLT--------GELSSSFRNCSQ 558
           F  L  L L  N     +P S+  L  ++ LS+     LT         + S   +    
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 559 LRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNI 618
           L+ L L    +   +P  +   L NL  L ++++     +   +  L  L+ LDL     
Sbjct: 185 LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 619 SGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLE---LSNNNLN 675
               P  F     +            +L+L    +       +  +  LE   L      
Sbjct: 242 LRNYPPIFGGRAPLK-----------RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 676 GAVPEEIMDLVGLVALNLSKNHLTGQIS 703
             +P  I  L     + +  +       
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.7 bits (174), Expect = 3e-13
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 14/171 (8%)

Query: 581 LSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDP 640
            S    L  + +         L Q       D +  + + +     NN    T+   +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIETRTGRALK 69

Query: 641 TIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTG 700
              D L            +T     +LEL +  L    P++   L  L  + +    L  
Sbjct: 70  ATADLL----------EDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM- 117

Query: 701 QISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIP 751
           ++   + Q   L+ L L+RN L   +P+S++ L+ L  + +       ++P
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 9e-11
 Identities = 23/232 (9%), Positives = 52/232 (22%), Gaps = 50/232 (21%)

Query: 526 PDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLI 585
                     + L    +              +    D  +             + +N  
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQ 59

Query: 586 VLSLKSNKFHGKIP-FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644
           + +             +         L+L    +  + P      + +            
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH---------- 108

Query: 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISP 704
                                 + +    L   +P+ +    GL  L L++N L   +  
Sbjct: 109 ----------------------MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA 144

Query: 705 KIGQLKSLDFLDLSRNQLVGGIPSSLSQ---------LSGLSVMDLSYNNLS 747
            I  L  L  L +     +  +P  L+          L  L  + L +  + 
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (256), Expect = 9e-23
 Identities = 72/412 (17%), Positives = 133/412 (32%), Gaps = 97/412 (23%)

Query: 214 TSLETLVLSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSF 272
                L + ++ LT+     LP  + +   ++ +  N L  S+P        L  L +S 
Sbjct: 40  NGNAVLNVGESGLTT-----LPDCLPAHITTLVIPDNNLT-SLPALPPE---LRTLEVSG 90

Query: 273 NELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGV 331
           N+L   +P     +  L   +     L    S              L  L++  N LT  
Sbjct: 91  NQLTS-LPVLPPGLLELSIFSNPLTHLPALPS-------------GLCKLWIFGNQLT-- 134

Query: 332 ISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQI 391
              S       L+EL +++N L                            P       ++
Sbjct: 135 ---SLPVLPPGLQELSVSDNQLA-------------------------SLPALPS---EL 163

Query: 392 ELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK------GKLPNLSSRFGTSNPGID 445
             L   N  ++ ++P     L      L ++ NQ+        +L  L            
Sbjct: 164 CKLWAYNNQLT-SLPMLPSGLQE----LSVSDNQLASLPTLPSELYKL-----------W 207

Query: 446 ISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCW 505
             +N    L P LPS    L +S NR +           S+L  + +S N L+  LP   
Sbjct: 208 AYNNRLTSL-PALPSGLKELIVSGNRLTSLPVLP-----SELKELMVSGNRLT-SLPM-- 258

Query: 506 WTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG 565
                L+ L++  N  + R+P+S+  L +  T++L  N L+     + +   ++      
Sbjct: 259 -LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGY 313

Query: 566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNN 617
              +   I   M  + +     +L        +P +  + A      +    
Sbjct: 314 SGPI---IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (252), Expect = 3e-22
 Identities = 62/297 (20%), Positives = 104/297 (35%), Gaps = 44/297 (14%)

Query: 458 LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLE 517
           L + ++ LN+ ++     ++ L     + +T + +  N L+  LP        L  L + 
Sbjct: 38  LNNGNAVLNVGESG----LTTLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVS 89

Query: 518 NNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWM 577
            N  +  +P     L  +   S     L    S        L  L +  N L   +P   
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQL-TSLP--- 137

Query: 578 GESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK------CFNNFTA 631
                 L  LS+  N+    +P    +L  L   +  L ++              N   +
Sbjct: 138 -VLPPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195

Query: 632 MTQERSSDPTIK-DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVA 690
           +    S    +      LT         +    +K L +S N L  ++P    +L     
Sbjct: 196 LPTLPSELYKLWAYNNRLT------SLPALPSGLKELIVSGNRLT-SLPVLPSELK---E 245

Query: 691 LNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
           L +S N LT  +      L SL    + RNQL   +P SL  LS  + ++L  N LS
Sbjct: 246 LMVSGNRLT-SLPMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.3 bits (237), Expect = 2e-20
 Identities = 49/276 (17%), Positives = 89/276 (32%), Gaps = 68/276 (24%)

Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
           +    +++  + L+  LPDC      +  L + +N+ +  +P        ++TL +  N+
Sbjct: 40  NGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQ 92

Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ 604
           LT  L        +L +       L            S L  L +  N+    +P     
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHL--------PALPSGLCKLWIFGNQLT-SLPVLPPG 142

Query: 605 LAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLV 664
           L   Q L +S N ++  +P   +                                    +
Sbjct: 143 L---QELSVSDNQLA-SLPALPSE-----------------------------------L 163

Query: 665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724
             L   NN L  ++P       GL  L++S N L   +     +L  L   +     L  
Sbjct: 164 CKLWAYNNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL-- 216

Query: 725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFN 760
             P+  S L  L    +S N L+      ++L+   
Sbjct: 217 --PALPSGLKEL---IVSGNRLTSLPVLPSELKELM 247

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.9 bits (228), Expect = 2e-19
 Identities = 62/323 (19%), Positives = 108/323 (33%), Gaps = 79/323 (24%)

Query: 314 CLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISL 372
           CL N    L + E+ LT  + +   ++   +  L + +N L                   
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLT------------------ 74

Query: 373 SSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPN 432
                    P       ++  L++S   ++ ++P     L    S        +      
Sbjct: 75  -------SLPALP---PELRTLEVSGNQLT-SLPVLPPGLLE-LSIFSNPLTHLPALPSG 122

Query: 433 LSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDL 492
           L          + I  N    L P LP     L++S N+ +   S     S  +L  +  
Sbjct: 123 LCK--------LWIFGNQLTSL-PVLPPGLQELSVSDNQLA---SLPALPS--ELCKLWA 168

Query: 493 SSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSS 552
            +N L+  LP        L  L++ +N  +  +P     L     L  +NNRLT  L + 
Sbjct: 169 YNNQLT-SLPM---LPSGLQELSVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPAL 219

Query: 553 FRNCSQLRLLDLGKNALYGEIPTWMG----------------ESLSNLIVLSLKSNKFHG 596
               S L+ L +  N L   +P                       S L+ LS+  N+   
Sbjct: 220 ---PSGLKELIVSGNRL-TSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT- 274

Query: 597 KIPFQLCQLAFLQVLDLSLNNIS 619
           ++P  L  L+    ++L  N +S
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.0 bits (218), Expect = 4e-18
 Identities = 69/384 (17%), Positives = 120/384 (31%), Gaps = 77/384 (20%)

Query: 389 NQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK---GKLPNLSSRFGTSNPGID 445
           N   +L++  +G++ T+PD    L    + L +  N +       P L +        ++
Sbjct: 40  NGNAVLNVGESGLT-TLPD---CLPAHITTLVIPDNNLTSLPALPPELRT--------LE 87

Query: 446 ISSNHFEGLIPPLPSNSS---FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLP 502
           +S N    L P LP         +          S         L  + +  N L+  LP
Sbjct: 88  VSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLT-SLP 137

Query: 503 DCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562
                   L  L++ +N  +  +P     L     L  +NN+LT  L       S L+ L
Sbjct: 138 V---LPPGLQELSVSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPMLP---SGLQEL 186

Query: 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI 622
            +  N L   +P       S L  L   +N+    +P     L  L V    L ++    
Sbjct: 187 SVSDNQL-ASLP----TLPSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLP 240

Query: 623 PK-----CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGA 677
            +        N                   LT              + SL +  N L   
Sbjct: 241 SELKELMVSGNR------------------LT------SLPMLPSGLLSLSVYRNQLT-R 275

Query: 678 VPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPS--SLSQLSG 735
           +PE ++ L     +NL  N L+ +    + ++ S         +      S    ++   
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335

Query: 736 LSVMDLSYNNLSGKIPTVTQLQSF 759
           L+  D       G+     +   F
Sbjct: 336 LAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 87.3 bits (216), Expect = 7e-18
 Identities = 58/277 (20%), Positives = 95/277 (34%), Gaps = 55/277 (19%)

Query: 89  LRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYL 148
           +  L +  N+ +   +P       +LR L++ G      +P     L  L        +L
Sbjct: 63  ITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHL 116

Query: 149 FSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLN 208
            +          S L  L +  + L +          L  L         LP +    L 
Sbjct: 117 PAL--------PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPS-ELC 164

Query: 209 HLNSS-----------TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPE 257
            L +            + L+ L +SDN L S     LP + S    +    N+L  S+P 
Sbjct: 165 KLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRLT-SLPA 218

Query: 258 SFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN 317
                  L+ L +S N L   +P        L  L +S N+L+  L  +           
Sbjct: 219 LPSG---LKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPSG-------- 262

Query: 318 SLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPL 353
            L SL +  N LT +       ++S+   ++L  NPL
Sbjct: 263 -LLSLSVYRNQLTRLPES--LIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 63/257 (24%)

Query: 500 KLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQL 559
           K+  C        +LN+  +  +  +PD      +I TL + +N LT  L +      +L
Sbjct: 33  KMRACLNN--GNAVLNVGESGLT-TLPDC--LPAHITTLVIPDNNLT-SLPALP---PEL 83

Query: 560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS 619
           R L++  N L   +P      L  L + S         +P     L     L +  N ++
Sbjct: 84  RTLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTH----LPALPSGL---CKLWIFGNQLT 134

Query: 620 GKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP 679
             +P                                        ++ L +S+N L  ++P
Sbjct: 135 -SLPVLPPG-----------------------------------LQELSVSDNQLA-SLP 157

Query: 680 EEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVM 739
               +L     L    N LT  +      L+ L    +S NQL   +P+  S+L  L   
Sbjct: 158 ALPSELC---KLWAYNNQLT-SLPMLPSGLQELS---VSDNQLAS-LPTLPSELYKLWAY 209

Query: 740 DLSYNNLSGKIPTVTQL 756
           +    +L      + +L
Sbjct: 210 NNRLTSLPALPSGLKEL 226

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 55/274 (20%), Positives = 87/274 (31%), Gaps = 62/274 (22%)

Query: 82  ALLKLHDLRHLNLSFNDFSGSPIPEFIGS-LSKLRYLDLFGTVFAGPIPPQLGNLSRLQH 140
              KL  L  L+LS N  S            + L+YLDL        +      L +L+H
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 105

Query: 141 LDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLP 200
           LD   + L           L  L YL++  ++                            
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------------------------- 140

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQ 260
                     N  +SLE L ++ N+   +                         +P+ F 
Sbjct: 141 ----AFNGIFNGLSSLEVLKMAGNSFQENF------------------------LPDIFT 172

Query: 261 HMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK 320
            +  L  L LS  +LE   P  F ++ SL  LN+S+N      +   + L+      SL+
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN------SLQ 226

Query: 321 SLYLE-NSLTGVISESFFSNISNLKELHLANNPL 353
            L    N +     +      S+L  L+L  N  
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 64/273 (23%), Positives = 99/273 (36%), Gaps = 46/273 (16%)

Query: 480 CSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLS 539
           CS SG   T +  +S  L+  +P       S   L LE+N            L  +  LS
Sbjct: 5   CSCSG---TEIRCNSKGLT-SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58

Query: 540 LHNNRLT--GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGK 597
           L +N L+  G  S S    + L+ LDL  N +      ++G  L  L  L  + +     
Sbjct: 59  LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQM 116

Query: 598 IPFQLCQ-LAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSERE 656
             F +   L  L  LD+S  +        FN                             
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---------------------------- 148

Query: 657 YRSTLGLVKSLELSNNNLNGAVPEEI-MDLVGLVALNLSKNHLTGQISPKI-GQLKSLDF 714
               L  ++ L+++ N+       +I  +L  L  L+LS+  L  Q+SP     L SL  
Sbjct: 149 ----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQV 203

Query: 715 LDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
           L++S N            L+ L V+D S N++ 
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 56/316 (17%), Positives = 105/316 (33%), Gaps = 68/316 (21%)

Query: 287 CSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKEL 346
           CS   +  ++      L+ +   + S     S   L LE++    +    F  ++ L +L
Sbjct: 7   CSGTEIRCNSK----GLTSVPTGIPS-----SATRLELESNKLQSLPHGVFDKLTQLTKL 57

Query: 347 HLANNPLVLKLSHDWVPPF------QLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTG 400
            L++N     LS              L  + LS   +            Q+E LD  ++ 
Sbjct: 58  SLSSN----GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 112

Query: 401 ISDTIP-DWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLP 459
           +        F +L N   +LD++    +                    +  F GL     
Sbjct: 113 LKQMSEFSVFLSLRN-LIYLDISHTHTR-----------------VAFNGIFNGL----- 149

Query: 460 SNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENN 519
           S+   L ++ N F  +           LT++DLS   L                  L   
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE----------------QLSPT 193

Query: 520 SFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGE 579
           +F+         L ++Q L++ +N      +  ++  + L++LD   N +       +  
Sbjct: 194 AFNS--------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 580 SLSNLIVLSLKSNKFH 595
             S+L  L+L  N F 
Sbjct: 246 FPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 27/204 (13%)

Query: 419 LDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFS-GSIS 477
           L+L SN+++                  +    F+ L     +  + L+LS N  S     
Sbjct: 33  LELESNKLQ-----------------SLPHGVFDKL-----TQLTKLSLSSNGLSFKGCC 70

Query: 478 FLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGF--LQNI 535
                  + L Y+DLS N +   +   +   + L  L+ ++++   ++ +   F  L+N+
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNL 128

Query: 536 QTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH 595
             L + +       +  F   S L +L +  N+        +   L NL  L L   +  
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 596 GKIPFQLCQLAFLQVLDLSLNNIS 619
              P     L+ LQVL++S NN  
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 36/172 (20%), Positives = 59/172 (34%), Gaps = 34/172 (19%)

Query: 582 SNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPT 641
           S+   L L+SNK          +L  L  L LS N +S     C  +    T        
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTS------- 79

Query: 642 IKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQ 701
                                 +K L+LS N +   +    + L  L  L+   ++L  Q
Sbjct: 80  ----------------------LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-Q 115

Query: 702 ISPK--IGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIP 751
           +S       L++L +LD+S            + LS L V+ ++ N+      
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.5 bits (243), Expect = 1e-21
 Identities = 69/305 (22%), Positives = 116/305 (38%), Gaps = 54/305 (17%)

Query: 52  RCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSL 111
            CSN+ + VI +          P    IS       + R LNL  N      +  F   L
Sbjct: 40  SCSNQFSKVICVRKN---LREVPDG--IST------NTRLLNLHENQIQIIKVNSFKH-L 87

Query: 112 SKLRYLDLFGTVFAGPIPPQ-LGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDE 170
             L  L L        I       L+ L  L+L  N L +  N     +LS L+ L L  
Sbjct: 88  RHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRLTTIPN-GAFVYLSKLKELWLRN 145

Query: 171 SNLAN-SSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSS 229
           + + +  S  F    ++ SL+ L L       +  +S       ++L  L L+  NL   
Sbjct: 146 NPIESIPSYAFN---RIPSLRRLDLGEL--KRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199

Query: 230 IYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSL 289
             P L  +  +   +DL  N L    P SFQ +++L+ L +  ++++      F N+ SL
Sbjct: 200 -IPNLTPLIKL-DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 290 ITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLA 349
           + +NL++N L+                              ++    F+ + +L+ +HL 
Sbjct: 258 VEINLAHNNLT------------------------------LLPHDLFTPLHHLERIHLH 287

Query: 350 NNPLV 354
           +NP  
Sbjct: 288 HNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 4e-19
 Identities = 62/271 (22%), Positives = 98/271 (36%), Gaps = 38/271 (14%)

Query: 455 IPP-LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVI 513
           +P  + +N+  LNL +N+    I          L  + LS N +       +    +L  
Sbjct: 58  VPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116

Query: 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEI 573
           L L +N  +     +  +L  ++ L L NN +    S +F     LR LDLG+      I
Sbjct: 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 574 PTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMT 633
                E LSNL  L+L       +IP  L  L  L  LDLS N++S   P  F     + 
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 634 QERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNL 693
           +                                L +  + +         +L  LV +NL
Sbjct: 235 K--------------------------------LWMIQSQIQVIERNAFDNLQSLVEINL 262

Query: 694 SKNHLTGQISPKI-GQLKSLDFLDLSRNQLV 723
           + N+LT  +   +   L  L+ + L  N   
Sbjct: 263 AHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 39/264 (14%)

Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
           ++ + V      L  ++PD      +  +LNL  N       +S   L++++ L L  N 
Sbjct: 43  NQFSKVICVRKNLR-EVPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ 604
           +      +F   + L  L+L  N L   IP      LS L  L L++N       +   +
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 605 LAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL 663
           +  L+ LDL        I +  F                                  L  
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEG--------------------------------LSN 186

Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723
           ++ L L+  NL   +P  +  L+ L  L+LS NHL+         L  L  L + ++Q+ 
Sbjct: 187 LRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 724 GGIPSSLSQLSGLSVMDLSYNNLS 747
               ++   L  L  ++L++NNL+
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 73/363 (20%), Positives = 118/363 (32%), Gaps = 117/363 (32%)

Query: 238 SSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNN 297
           S+ F  +      L+  +P+          L L  N+++      F ++  L  L LS N
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 298 KLSGQLSEIIQNLSSGCLEN--SLKSLYLE-NSLTGVISESFFSNISNLKELHLANNPLV 354
                    I+ +  G      +L +L L  N LT  I    F  +S LKEL L NNP+ 
Sbjct: 99  H--------IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPI- 148

Query: 355 LKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSN 414
                                                         I       F  + +
Sbjct: 149 --------------------------------------------ESIP---SYAFNRIPS 161

Query: 415 KFSFLDLAS-NQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFS 473
               LDL    ++                   IS   FEGL     SN  +LNL+     
Sbjct: 162 -LRRLDLGELKRLS-----------------YISEGAFEGL-----SNLRYLNLAMCN-- 196

Query: 474 GSISFLCSISG-SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFL 532
             +  + +++   KL  +DLS N LS                 +   SF G        L
Sbjct: 197 --LREIPNLTPLIKLDELDLSGNHLS----------------AIRPGSFQG--------L 230

Query: 533 QNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN 592
            ++Q L +  +++     ++F N   L  ++L  N L   +P  +   L +L  + L  N
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLHHN 289

Query: 593 KFH 595
            ++
Sbjct: 290 PWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 5e-15
 Identities = 54/242 (22%), Positives = 83/242 (34%), Gaps = 41/242 (16%)

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
            +    +     +    +PD  G   N + L+LH N++     +SF++   L +L L +N
Sbjct: 42  SNQFSKVICVRKNLR-EVPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ-LCQLAFLQVLDLSLNNISGKIPKCF 626
            +   I       L+NL  L L  N+    IP      L+ L+ L L  N I       F
Sbjct: 99  HI-RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAF 156

Query: 627 NNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEI-MDL 685
           N   ++                                  L+L        + E     L
Sbjct: 157 NRIPSLR--------------------------------RLDLGELKRLSYISEGAFEGL 184

Query: 686 VGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNN 745
             L  LNL+  +L     P +  L  LD LDLS N L    P S   L  L  + +  + 
Sbjct: 185 SNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 746 LS 747
           + 
Sbjct: 243 IQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.6 bits (181), Expect = 8e-14
 Identities = 51/247 (20%), Positives = 86/247 (34%), Gaps = 30/247 (12%)

Query: 390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSN 449
              LL++    I     + F +L +    L L+ N I+                  I   
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRH-LEILQLSRNHIR-----------------TIEIG 106

Query: 450 HFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFD 509
            F GL     +N + L L  NR + +I     +  SKL  + L +N +       +    
Sbjct: 107 AFNGL-----ANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160

Query: 510 SLVILNLENNSFSGRIPDSMGF--LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
           SL  L+L        I +   F  L N++ L+L    L      +     +L  LDL  N
Sbjct: 161 SLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGN 217

Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
            L   I     + L +L  L +  ++           L  L  ++L+ NN++      F 
Sbjct: 218 HL-SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 628 NFTAMTQ 634
               + +
Sbjct: 277 PLHHLER 283

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 40/179 (22%), Positives = 61/179 (34%), Gaps = 36/179 (20%)

Query: 582 SNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPT 641
           +N  +L+L  N+           L  L++L LS N+I       FN    +         
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL--------- 114

Query: 642 IKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQ 701
                                   +LEL +N L        + L  L  L L  N +   
Sbjct: 115 -----------------------NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-S 150

Query: 702 ISPKI-GQLKSLDFLDLSR-NQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQS 758
           I      ++ SL  LDL    +L      +   LS L  ++L+  NL  +IP +T L  
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIK 208

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 65/305 (21%), Positives = 105/305 (34%), Gaps = 54/305 (17%)

Query: 52  RCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSL 111
            CSN+ + V+            P    I        + R+LNL  N+        F   L
Sbjct: 51  SCSNQFSKVVCTRRG---LSEVPQG--IPS------NTRYLNLMENNIQMIQADTFRH-L 98

Query: 112 SKLRYLDLFGTVFAGPIPPQ-LGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDE 170
             L  L L        I       L+ L  L+L  N+L +        +LS LR L L  
Sbjct: 99  HHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRN 156

Query: 171 SNLAN-SSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSS 229
           + + +  S  F    ++ SL  L L       +  +S        +L+ L L   N+   
Sbjct: 157 NPIESIPSYAFN---RVPSLMRLDLGEL--KKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211

Query: 230 IYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSL 289
             P L  +  +   +++  N      P SF  +  L+ L +  +++       F  + SL
Sbjct: 212 --PNLTPLVGL-EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 290 ITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLA 349
           + LNL++N LS                               +    F+ +  L ELHL 
Sbjct: 269 VELNLAHNNLS------------------------------SLPHDLFTPLRYLVELHLH 298

Query: 350 NNPLV 354
           +NP  
Sbjct: 299 HNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 60/271 (22%), Positives = 98/271 (36%), Gaps = 38/271 (14%)

Query: 455 IPP-LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVI 513
           +P  +PSN+ +LNL +N     I          L  + L  N +       +    SL  
Sbjct: 69  VPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127

Query: 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEI 573
           L L +N  +     +  +L  ++ L L NN +    S +F     L  LDLG+      I
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 574 PTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMT 633
                E L NL  L+L        +P  L  L  L+ L++S N+     P  F+  +++ 
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 634 QERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNL 693
           +                                L + N+ ++         L  LV LNL
Sbjct: 246 K--------------------------------LWVMNSQVSLIERNAFDGLASLVELNL 273

Query: 694 SKNHLTGQISPKI-GQLKSLDFLDLSRNQLV 723
           + N+L+  +   +   L+ L  L L  N   
Sbjct: 274 AHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.0 bits (213), Expect = 1e-17
 Identities = 62/265 (23%), Positives = 101/265 (38%), Gaps = 41/265 (15%)

Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
           ++ + V  +   LS ++P       +   LNL  N+      D+   L +++ L L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ 604
           +      +F   + L  L+L  N L   IP+   E LS L  L L++N       +   +
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169

Query: 605 LAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL 663
           +  L  LDL        I +  F                                  L  
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEG--------------------------------LFN 197

Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPK-IGQLKSLDFLDLSRNQL 722
           +K L L   N+   +P  +  LVGL  L +S NH   +I P     L SL  L +  +Q+
Sbjct: 198 LKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQV 254

Query: 723 VGGIPSSLSQLSGLSVMDLSYNNLS 747
                ++   L+ L  ++L++NNLS
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.3 bits (206), Expect = 6e-17
 Identities = 69/363 (19%), Positives = 115/363 (31%), Gaps = 117/363 (32%)

Query: 238 SSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNN 297
           S+ F  +      L   +P+         +L L  N ++      F ++  L  L L  N
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 298 KLSGQLSEIIQNLSSGCLEN--SLKSLYLE-NSLTGVISESFFSNISNLKELHLANNPLV 354
                    I+ +  G      SL +L L  N LT VI    F  +S L+EL L NNP+ 
Sbjct: 110 S--------IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPI- 159

Query: 355 LKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSN 414
                                                         I       F  + +
Sbjct: 160 --------------------------------------------ESIP---SYAFNRVPS 172

Query: 415 KFSFLDLAS-NQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFS 473
               LDL    +++                  IS   FEGL      N  +LNL      
Sbjct: 173 -LMRLDLGELKKLE-----------------YISEGAFEGL-----FNLKYLNLGMCN-- 207

Query: 474 GSISFLCSISG-SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFL 532
             I  + +++    L  +++S N                    +   SF G        L
Sbjct: 208 --IKDMPNLTPLVGLEELEMSGNHFP----------------EIRPGSFHG--------L 241

Query: 533 QNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN 592
            +++ L + N++++    ++F   + L  L+L  N L   +P  +   L  L+ L L  N
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHN 300

Query: 593 KFH 595
            ++
Sbjct: 301 PWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 48/241 (19%), Positives = 80/241 (33%), Gaps = 39/241 (16%)

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
            +    +       S  +P   G   N + L+L  N +    + +FR+   L +L LG+N
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
           ++  +I       L++L  L L  N            L+ L+ L L  N I       FN
Sbjct: 110 SI-RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 628 NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEI-MDLV 686
              ++                                  L+L        + E     L 
Sbjct: 169 RVPSL--------------------------------MRLDLGELKKLEYISEGAFEGLF 196

Query: 687 GLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746
            L  LNL   ++     P +  L  L+ L++S N      P S   LS L  + +  + +
Sbjct: 197 NLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

Query: 747 S 747
           S
Sbjct: 255 S 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.6 bits (181), Expect = 9e-14
 Identities = 50/250 (20%), Positives = 85/250 (34%), Gaps = 36/250 (14%)

Query: 390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSN 449
               L++    I     D F +L +    L L  N I+                  I   
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHH-LEVLQLGRNSIR-----------------QIEVG 117

Query: 450 HFEGLIPPLPSNSSFLNLSKNRFS----GSISFLCSISGSKLTYVDLSSNLLSGKLPDCW 505
            F GL     ++ + L L  N  +    G+  +L     SKL  + L +N +       +
Sbjct: 118 AFNGL-----ASLNTLELFDNWLTVIPSGAFEYL-----SKLRELWLRNNPIESIPSYAF 167

Query: 506 WTFDSLVILNLENNSFSGRIPDSM-GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564
               SL+ L+L        I +     L N++ L+L    +      +      L  L++
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEM 225

Query: 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK 624
             N    EI       LS+L  L + +++           LA L  L+L+ NN+S     
Sbjct: 226 SGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 625 CFNNFTAMTQ 634
            F     + +
Sbjct: 285 LFTPLRYLVE 294

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 91.2 bits (226), Expect = 3e-19
 Identities = 61/330 (18%), Positives = 103/330 (31%), Gaps = 71/330 (21%)

Query: 457 PLPSNSSFLNLSKNRFSGSIS------FLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDS 510
            LP N++  +LS+N F  +IS      F       K      + N     L +C      
Sbjct: 4   MLPINNN-FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--Q 60

Query: 511 LVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALY 570
              L L   + S  +PD++     I  L +  N L   L       + L  LD   N L 
Sbjct: 61  FSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELP---ASLEYLDACDNRL- 112

Query: 571 GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFT 630
             +P    E  ++L  L + +N+    +P     L   + ++   N ++  +P       
Sbjct: 113 STLP----ELPASLKHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLP------- 156

Query: 631 AMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVA 690
                                            ++ L + NN L   +PE       L A
Sbjct: 157 ----------------------------ELPTSLEVLSVRNNQLT-FLPEL---PESLEA 184

Query: 691 LNLSKNHLTGQISPKIGQLKSL----DFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746
           L++S N L   +     +         F     N++   IP ++  L     + L  N L
Sbjct: 185 LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPL 242

Query: 747 SGKIPTVTQLQSFNDTVYAGNPELCGLPLP 776
           S +I      Q+     +            
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.7 bits (217), Expect = 4e-18
 Identities = 57/319 (17%), Positives = 106/319 (33%), Gaps = 69/319 (21%)

Query: 440 SNPGIDISSNHFEGLIPPLPSNS-------SFLNLSKNRFSGSISFLCSISGSKLTYVDL 492
            N    +S N F   I    ++            L     + ++S L     ++ + + L
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 493 SSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSS 552
           +   LS  LPD       + +L +  N+    +P+      +++ L   +NRL+  L   
Sbjct: 67  NRLNLS-SLPDN--LPPQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPEL 118

Query: 553 FRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLD 612
             +   L+ LD+  N L     T + E  + L  ++  +N+    +P     L   +VL 
Sbjct: 119 PAS---LKHLDVDNNQL-----TMLPELPALLEYINADNNQLT-MLPELPTSL---EVLS 166

Query: 613 LSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNN 672
           +  N ++  +P+   +                   L                  L++S N
Sbjct: 167 VRNNQLT-FLPELPES-------------------LEA----------------LDVSTN 190

Query: 673 NLNGAVPEEIMDLVGL----VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPS 728
            L  ++P   +         +     +N +T  I   I  L     + L  N L   I  
Sbjct: 191 LLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 729 SLSQLSGLSVMDLSYNNLS 747
           SLSQ +            S
Sbjct: 249 SLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.3 bits (208), Expect = 5e-17
 Identities = 56/308 (18%), Positives = 105/308 (34%), Gaps = 60/308 (19%)

Query: 419 LDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLP----SNSSFLNLSKNRFSG 474
            +   N I G   +  S +        +   +    +  L     +  S L L++     
Sbjct: 15  QNSFYNTISGTYADYFSAW-DKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN--- 70

Query: 475 SISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQN 534
            +S L      ++T ++++ N L   LP+      SL  L+  +N  S  +P+    L++
Sbjct: 71  -LSSLPDNLPPQITVLEITQNALI-SLPE---LPASLEYLDACDNRLS-TLPELPASLKH 124

Query: 535 IQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKF 594
              L + NN+LT  L       + L  ++   N L   +P    E  ++L VLS+++N+ 
Sbjct: 125 ---LDVDNNQLT-MLPELP---ALLEYINADNNQL-TMLP----ELPTSLEVLSVRNNQL 172

Query: 595 HGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSE 654
              +P     L   + LD+S N +   +P          +                    
Sbjct: 173 -TFLPELPESL---EALDVSTNLLES-LPAVPVRNHHSEE-------------------- 207

Query: 655 REYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDF 714
                            N +   +PE I+ L     + L  N L+ +I   + Q  +   
Sbjct: 208 --------TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 715 LDLSRNQL 722
               R   
Sbjct: 259 YHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 8e-17
 Identities = 56/294 (19%), Positives = 105/294 (35%), Gaps = 38/294 (12%)

Query: 290 ITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLA 349
           ++ N   N +SG  ++          E         N    ++ E   +      EL L 
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDK--WEKQALPGENRNEAVSLLKECLINQ---FSELQLN 67

Query: 350 NNPLVLKLSH--DWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPD 407
                  LS   D +PP Q+ ++ ++   +    P+       +E LD  +  +S T+P+
Sbjct: 68  RL----NLSSLPDNLPP-QITVLEITQNALI-SLPELP---ASLEYLDACDNRLS-TLPE 117

Query: 408 WFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNL 467
              +L +    LD+ +NQ+   LP L +        I+  +N    L P LP++   L++
Sbjct: 118 LPASLKH----LDVDNNQLT-MLPELPALLEY----INADNNQLTML-PELPTSLEVLSV 167

Query: 468 SKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSL----VILNLENNSFSG 523
             N+ +             L  +D+S+NLL   LP             +      N  + 
Sbjct: 168 RNNQLTFLPELP-----ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT- 220

Query: 524 RIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWM 577
            IP+++  L    T+ L +N L+  +  S    +        +           
Sbjct: 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 44/242 (18%), Positives = 94/242 (38%), Gaps = 37/242 (15%)

Query: 81  PALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQH 140
                ++    L L+  + S   +P+ +    ++  L++        +P    +L   ++
Sbjct: 53  LKECLINQFSELQLNRLNLSS--LPDNLPP--QITVLEITQNAL-ISLPELPASL---EY 104

Query: 141 LDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLP 200
           LD   N L +          + L++L++D + L    +          L+ ++  +  L 
Sbjct: 105 LDACDNRLST-----LPELPASLKHLDVDNNQLTMLPELPA------LLEYINADNNQLT 153

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQ 260
            ++P         TSLE L + +N LT      LP +     ++D+  N L+ S+P    
Sbjct: 154 -MLPELP------TSLEVLSVRNNQLTF-----LPELPESLEALDVSTNLLE-SLPAVPV 200

Query: 261 HMVYLE----HLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLE 316
              + E      R   N +   IP+   ++    T+ L +N LS ++ E +   ++    
Sbjct: 201 RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

Query: 317 NS 318
           + 
Sbjct: 260 HG 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.5 bits (167), Expect = 4e-12
 Identities = 46/305 (15%), Positives = 82/305 (26%), Gaps = 88/305 (28%)

Query: 476 ISFLCSISGSKLTYVDLSSNLLSG---KLPDCWWTFDSLVILNLENNSFSGRIPDSMGFL 532
           +S +  I+ +     +   N +SG        W  ++   +     N     + +    +
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC--LI 58

Query: 533 QNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN 592
                L L+   L+  L  +     Q+ +L++ +NAL                       
Sbjct: 59  NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNAL----------------------- 92

Query: 593 KFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKG 652
                +P     L +L   D  L+ +                                  
Sbjct: 93  ---ISLPELPASLEYLDACDNRLSTLPELPASL--------------------------- 122

Query: 653 SEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSL 712
                       K L++ NN L   +PE       L  +N   N LT  +      L+ L
Sbjct: 123 ------------KHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTSLEVL 165

Query: 713 DFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG---KIPTVTQLQSFNDTVYAGNPE 769
               +  NQL   +P     L  L   D+S N L             +            
Sbjct: 166 S---VRNNQL-TFLPELPESLEAL---DVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218

Query: 770 LCGLP 774
           +  +P
Sbjct: 219 ITHIP 223

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.7 bits (165), Expect = 9e-12
 Identities = 58/439 (13%), Positives = 126/439 (28%), Gaps = 78/439 (17%)

Query: 234 LPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLS---FNELEGGIPKFFGNMCSLI 290
           LP  ++  +S +  +N + G+  + F      E   L     NE    + +   N     
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFS 62

Query: 291 TLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLA 349
            L L+   LS  L + +           +  L + +N+L      S     ++L+ L   
Sbjct: 63  ELQLNRLNLS-SLPDNLPP--------QITVLEITQNALI-----SLPELPASLEYLDAC 108

Query: 350 NNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWF 409
           +N L                            P+       ++ LD+ N  ++  +P+  
Sbjct: 109 DNRLS-------------------------TLPELPA---SLKHLDVDNNQLT-MLPELP 139

Query: 410 WNLSNKFSFLDLASNQIKG---KLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLN 466
             L      ++  +NQ+        +L          + + +N    L P LP +   L+
Sbjct: 140 ALLEY----INADNNQLTMLPELPTSLEV--------LSVRNNQLTFL-PELPESLEALD 186

Query: 467 LSKNRFSG---SISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSG 523
           +S N                     +     N ++  +P+   + D    + LE+N  S 
Sbjct: 187 VSTNLLESLPAVPVRNHHSE-ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244

Query: 524 RIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSN 583
           RI +S+                +            L               + + +    
Sbjct: 245 RIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT--AWFPENKQSDVSQIWHA 302

Query: 584 LIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNN----FTAMTQERSSD 639
                  +         +L      +        ++  + K   +      +      + 
Sbjct: 303 FEHEEHANTFSA--FLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADAT 360

Query: 640 PTIKDKLMLTWKGSEREYR 658
            + +D++ LTW    +   
Sbjct: 361 ESCEDRVALTWNNLRKTLL 379

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.0 bits (221), Expect = 3e-19
 Identities = 47/280 (16%), Positives = 93/280 (33%), Gaps = 45/280 (16%)

Query: 82  ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQL-GNLSRLQH 140
            L +  +L+ L L+ N  +      F   L  L +LDL     +  +       LS L  
Sbjct: 71  DLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEHLDLSYNYLSN-LSSSWFKPLSSLTF 128

Query: 141 LDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLP 200
           L+L  N   + G     SHL+ L+ L +  +    +    +    L  L+ L + +  L 
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVG-NMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTS---SIYPWLPNISSIFIS----IDLGFNQLQG 253
              P SL  +    ++  L+L                 ++  + +         F++L  
Sbjct: 188 SYEPKSLKSI---QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSG 313
               S        +++++   L   + K    +  L+ L  S N+L              
Sbjct: 245 GETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS------------ 291

Query: 314 CLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
                             + +  F  +++L+++ L  NP 
Sbjct: 292 ------------------VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.2 bits (211), Expect = 6e-18
 Identities = 64/307 (20%), Positives = 115/307 (37%), Gaps = 37/307 (12%)

Query: 221 LSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGI 279
            S  +L S     +P  ++    S+DL  N++        Q  V L+ L L+ N +    
Sbjct: 38  GSSGSLNS-----IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92

Query: 280 PKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFS 338
              F ++ SL  L+LS N LS   S   + LS      SL  L L  N    +   S FS
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS------SLTFLNLLGNPYKTLGETSLFS 146

Query: 339 NISNLKELHLANNPLVLKLSHDWVPPF-QLIIISLSSCKIGPHFPKWLQTQNQIELLDIS 397
           +++ L+ L + N     K+          L  + + +  +  + PK L++   +  L + 
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 398 NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPP 457
                  + + F ++++    L+L    +             +    ++S+     LI  
Sbjct: 207 MKQHI-LLLEIFVDVTSSVECLELRDTDL------------DTFHFSELSTGETNSLIKK 253

Query: 458 LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFD---SLVIL 514
                  + ++       +  L  I  S L  ++ S N L   +PD    FD   SL  +
Sbjct: 254 F--TFRNVKITDESLFQVMKLLNQI--SGLLELEFSRNQLKS-VPD--GIFDRLTSLQKI 306

Query: 515 NLENNSF 521
            L  N +
Sbjct: 307 WLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 65/316 (20%), Positives = 112/316 (35%), Gaps = 43/316 (13%)

Query: 440 SNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSG 499
            N     SS     +   L      L+LS NR +  IS         L  + L+SN ++ 
Sbjct: 32  RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN- 89

Query: 500 KLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQL 559
                           +E +SFS         L +++ L L  N L+   SS F+  S L
Sbjct: 90  ---------------TIEEDSFSS--------LGSLEHLDLSYNYLSNLSSSWFKPLSSL 126

Query: 560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ-LCQLAFLQVLDLSLNNI 618
             L+L  N       T +   L+ L +L + +     KI  +    L FL+ L++  +++
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 619 SGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAV 678
               PK   +   ++            L +               V+ LEL + +L+   
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV--------TSSVECLELRDTDLDTFH 238

Query: 679 PEEI--------MDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSL 730
             E+        +       + ++   L  Q+   + Q+  L  L+ SRNQL        
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIF 297

Query: 731 SQLSGLSVMDLSYNNL 746
            +L+ L  + L  N  
Sbjct: 298 DRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 49/334 (14%), Positives = 103/334 (30%), Gaps = 76/334 (22%)

Query: 265 LEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSL 322
           ++ L LS N +            +L  L L++N         I  +      +  SL+ L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG--------INTIEEDSFSSLGSLEHL 105

Query: 323 YL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHF 381
            L  N L+  +S S+F  +S+L  L+L  NP                  +L         
Sbjct: 106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNP----------------YKTLGE----TSL 144

Query: 382 PKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSN 441
              L     + + +      +      F  L+     L++ ++ ++              
Sbjct: 145 FSHLTKLQILRVGN--MDTFTKIQRKDFAGLTFL-EELEIDASDLQ-------------- 187

Query: 442 PGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKL 501
                     + +      N S L L   +    +  +     S +  ++L    L    
Sbjct: 188 ---SYEPKSLKSI-----QNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD--- 235

Query: 502 PDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRL 561
                            +  S    +S+      + + + +  L  ++       S L  
Sbjct: 236 -------------TFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLE 281

Query: 562 LDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH 595
           L+  +N L   +P  + + L++L  + L +N + 
Sbjct: 282 LEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 60/344 (17%), Positives = 110/344 (31%), Gaps = 75/344 (21%)

Query: 163 LRYLNLDESNLAN-SSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVL 221
           ++ L+L  + +   S+   Q   +  +L+ L L S  +  +   S + L    SLE L L
Sbjct: 54  VKSLDLSNNRITYISNSDLQ---RCVNLQALVLTSNGINTIEEDSFSSL---GSLEHLDL 107

Query: 222 SDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPK 281
           S N L++     L                        F+ +  L  L L  N  +     
Sbjct: 108 SYNYLSN-----LS--------------------SSWFKPLSSLTFLNLLGNPYKTLGET 142

Query: 282 -FFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYLENSLTGVISESFFS 338
             F ++  L  L + N             +          L+ L ++ S           
Sbjct: 143 SLFSHLTKLQILRVGNMDT-------FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 339 NISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSS--------CKIGPHFPKWLQTQNQ 390
           +I N+  L L     +L L         +  + L           ++       L  +  
Sbjct: 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255

Query: 391 IELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKG-------KLPNLSSRFGTSNPG 443
              + I++  +   +      +S     L+ + NQ+K        +L +L          
Sbjct: 256 FRNVKITDESLF-QVMKLLNQISG-LLELEFSRNQLKSVPDGIFDRLTSLQK-------- 305

Query: 444 IDISSNHFE---GLIPPLPSNSSFLNLSKNRFSGSISFLCSISG 484
           I + +N ++     I  L   S +LN +  +  GS    CS SG
Sbjct: 306 IWLHTNPWDCSCPRIDYL---SRWLNKNSQKEQGSA--KCSGSG 344

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 24/166 (14%)

Query: 62  LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG 121
           L  L+ ++ D+  L+     +L  + ++ HL L            F+   S +  L+L  
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL-EIFVDVTSSVECLELRD 231

Query: 122 TVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQ 181
           T           +L      +L      STG  + L      R + + + +L        
Sbjct: 232 T-----------DLDTFHFSEL------STGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

Query: 182 VIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLT 227
              ++  L  L      L  V     + L   TSL+ + L  N   
Sbjct: 275 ---QISGLLELEFSRNQLKSVPDGIFDRL---TSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 31/170 (18%), Positives = 52/170 (30%), Gaps = 38/170 (22%)

Query: 582 SNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPT 641
             +  L L +N+        L +   LQ L L+ N I+      F++             
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS------------- 98

Query: 642 IKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTG 700
                              LG ++ L+LS N L   +       L  L  LNL  N    
Sbjct: 99  -------------------LGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYK- 137

Query: 701 QISPKI--GQLKSLDFLDLSRNQLVGGIPS-SLSQLSGLSVMDLSYNNLS 747
            +        L  L  L +        I     + L+ L  +++  ++L 
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.0 bits (216), Expect = 6e-19
 Identities = 55/246 (22%), Positives = 89/246 (36%), Gaps = 46/246 (18%)

Query: 114 LRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNL 173
            + + L G   +            L  L L SN L +  +    + L+ L  L+L ++  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 174 ANS--SDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIY 231
             S     F     L  L TL L  C L  + P     L    +L+ L L DN L +   
Sbjct: 93  LRSVDPATFH---GLGRLHTLHLDRCGLQELGPGLFRGL---AALQYLYLQDNALQA--- 143

Query: 232 PWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLIT 291
             LP                     ++F+ +  L HL L  N +     + F  + SL  
Sbjct: 144 --LP--------------------DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 292 LNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYLE-NSLTGVISESFFSNISNLKELHL 348
           L L  N+        + ++      +   L +LYL  N+L+  +     + +  L+ L L
Sbjct: 182 LLLHQNR--------VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRL 232

Query: 349 ANNPLV 354
            +NP V
Sbjct: 233 NDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 59/245 (24%), Positives = 88/245 (35%), Gaps = 38/245 (15%)

Query: 455 IPP-LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVI 513
           +P  +P+ S  + L  NR S  +      +   LT + L SN+L+      +     L  
Sbjct: 26  VPVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 514 LNLENNSFSGRIPDSM-GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGE 572
           L+L +N+    +  +    L  + TL L    L       FR  + L+ L L  NAL   
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QA 143

Query: 573 IPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM 632
           +P      L NL  L L  N+           L  L  L L  N ++   P  F +    
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD---- 199

Query: 633 TQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD-LVGLVAL 691
                                       LG + +L L  NNL+ A+P E +  L  L  L
Sbjct: 200 ----------------------------LGRLMTLYLFANNLS-ALPTEALAPLRALQYL 230

Query: 692 NLSKN 696
            L+ N
Sbjct: 231 RLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.9 bits (177), Expect = 6e-14
 Identities = 55/269 (20%), Positives = 81/269 (30%), Gaps = 39/269 (14%)

Query: 480 CSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLS 539
           C                L   +P       +   + L  N  S     S    +N+  L 
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 540 LHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP 599
           LH+N L    +++F   + L  LDL  NA    +       L  L  L L       ++ 
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELG 121

Query: 600 FQ-LCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYR 658
                 LA LQ L L  N +   +P   + F  +               LT         
Sbjct: 122 PGLFRGLAALQYLYLQDNALQ-ALPD--DTFRDLGN-------------LTH-------- 157

Query: 659 STLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDL 717
                   L L  N ++         L  L  L L +N +   + P     L  L  L L
Sbjct: 158 --------LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208

Query: 718 SRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746
             N L      +L+ L  L  + L+ N  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.9 bits (177), Expect = 8e-14
 Identities = 51/240 (21%), Positives = 83/240 (34%), Gaps = 38/240 (15%)

Query: 487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSL-HNNRL 545
              + L  N +S      +    +L IL L +N  +     +   L  ++ L L  N +L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 546 TGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ- 604
                ++F    +L  L L +  L  E+   +   L+ L  L L+ N     +P    + 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRD 151

Query: 605 LAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLV 664
           L  L  L L  N IS    + F                                  L  +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRG--------------------------------LHSL 179

Query: 665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLV 723
             L L  N +    P    DL  L+ L L  N+L+  +  +    L++L +L L+ N  V
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 52/228 (22%), Positives = 81/228 (35%), Gaps = 28/228 (12%)

Query: 391 IELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNH 450
            + + +    IS      F    N  + L L SN +                   I +  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRN-LTILWLHSNVLA-----------------RIDAAA 75

Query: 451 FEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDS 510
           F GL     +    L+LS N    S+         +L  + L    L    P  +    +
Sbjct: 76  FTGL-----ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 511 LVILNLENNSFSGRIPDSM-GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNAL 569
           L  L L++N+    +PD     L N+  L LH NR++     +FR    L  L L +N +
Sbjct: 131 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 570 YGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ-LAFLQVLDLSLN 616
              +       L  L+ L L +N     +P +    L  LQ L L+ N
Sbjct: 190 -AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 44/226 (19%), Positives = 70/226 (30%), Gaps = 27/226 (11%)

Query: 411 NLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKN 470
            +      + L  N+I                   + +  F         N + L L  N
Sbjct: 29  GIPAASQRIFLHGNRIS-----------------HVPAASFRAC-----RNLTILWLHSN 66

Query: 471 RFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTF-DSLVILNLENNSFSGRIPDSM 529
             +  I        + L  +DLS N     +    +     L  L+L+       +   +
Sbjct: 67  VLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124

Query: 530 -GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLS 588
              L  +Q L L +N L      +FR+   L  L L  N +   +P      L +L  L 
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLL 183

Query: 589 LKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQ 634
           L  N+     P     L  L  L L  NN+S    +      A+  
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 51/233 (21%), Positives = 78/233 (33%), Gaps = 26/233 (11%)

Query: 364 PFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLAS 423
           P     I L   +I        +    + +L + +  ++      F  L+     LDL+ 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL-LEQLDLSD 89

Query: 424 NQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSIS 483
           N        L S          +    F GL          L+L +      +       
Sbjct: 90  N------AQLRS----------VDPATFHGL-----GRLHTLHLDRCGLQ-ELGPGLFRG 127

Query: 484 GSKLTYVDLSSNLLSGKLPDCWWTF-DSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHN 542
            + L Y+ L  N L   LPD  +    +L  L L  N  S     +   L ++  L LH 
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 543 NRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH 595
           NR+      +FR+  +L  L L  N L   +PT     L  L  L L  N + 
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 45/227 (19%), Positives = 69/227 (30%), Gaps = 64/227 (28%)

Query: 524 RIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSN 583
            +P   G     Q + LH NR++   ++SFR C  L +L L  N L              
Sbjct: 25  AVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA------------- 69

Query: 584 LIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTI 642
                + +  F G        LA L+ LDLS N     +    F+    +          
Sbjct: 70  ----RIDAAAFTG--------LALLEQLDLSDNAQLRSVDPATFHGLGRLH--------- 108

Query: 643 KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEI-MDLVGLVALNLSKNHLTGQ 701
                                  +L L    L   +   +   L  L  L L  N L   
Sbjct: 109 -----------------------TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-A 143

Query: 702 ISPKI-GQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
           +       L +L  L L  N++      +   L  L  + L  N ++
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.9 bits (210), Expect = 5e-18
 Identities = 52/282 (18%), Positives = 75/282 (26%), Gaps = 46/282 (16%)

Query: 83  LLKLHDLRHLNLSFNDFSGSPIPEF--IGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQH 140
           ++K   L+ L +         +     +  +S L+ L L      G  PP L   +    
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 141 LDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLP 200
             L    +       WL+ L                            LK LS+   +  
Sbjct: 124 NILNLRNVSWATRDAWLAELQQW---------------------LKPGLKVLSIAQAHSL 162

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISI------DLGFNQLQGS 254
                 +       +L TL LSDN                F ++      + G     G 
Sbjct: 163 NFSCEQVRVF---PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 255 IPESFQHMVYLEHLRLSFNELEGGIPK-FFGNMCSLITLNLSNNKLSGQLSEIIQNLSSG 313
                   V L+ L LS N L              L +LNLS   L              
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV---------PK 270

Query: 314 CLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLV 354
            L   L  L L  N L           +  +  L L  NP +
Sbjct: 271 GLPAKLSVLDLSYNRLDRN---PSPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 5e-15
 Identities = 58/276 (21%), Positives = 82/276 (29%), Gaps = 50/276 (18%)

Query: 463 SFLNLSKNRFSGSI--SFLCSISGSKLTYVDLSSNLLSGKLPDCW--WTFDSLVILNLEN 518
             L +   R    I    L  +  S L  + L +  ++G  P      T   L ILNL N
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 519 NSFSGRIPDSMGF----LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIP 574
            S++ R              ++ LS+             R    L  LDL  N   GE  
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 575 ---TWMGESLSNLIVLSLKSNKFH---GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNN 628
                       L VL+L++       G           LQ LDLS N++          
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG----- 245

Query: 629 FTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGL 688
                                              + SL LS   L   VP+ +     L
Sbjct: 246 --------------------------APSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKL 276

Query: 689 VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724
             L+LS N L    +P   +L  +  L L  N  + 
Sbjct: 277 SVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 2e-14
 Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 417 SFLDLASNQIKGKLPNLSSRF--GTSNPGIDISSNHFEGLIPPLPSNSSF-----LNLSK 469
             L + + +I  ++   + R    +    + + +    G  PP    ++      LNL  
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 470 NRFSGSISFLCSISG---SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIP 526
             ++   ++L  +       L  + ++         +    F +L  L+L +N   G   
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 527 ----DSMGFLQNIQTLSLHNNRLT---GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGE 579
                       +Q L+L N  +    G  S+      QL+ LDL  N+L         +
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 580 SLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG 620
             S L  L+L       ++P  L     L VLDLS N +  
Sbjct: 251 WPSQLNSLNLSFTGLK-QVPKGLPAK--LSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 40/239 (16%), Positives = 69/239 (28%), Gaps = 28/239 (11%)

Query: 63  LDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGT 122
           L L+ ++         +      L+ L   N+S+                 L+ L +   
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 123 VFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQV 182
                   Q+     L  LDL  N       L                            
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-----------------------C 196

Query: 183 IGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI 242
             K  +L+ L+L +  +     +      +   L+ L LS N+L  +      +  S   
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG 301
           S++L F  L+            L  L LS+N L+   P     +  +  L+L  N    
Sbjct: 257 SLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 4e-13
 Identities = 49/298 (16%), Positives = 87/298 (29%), Gaps = 47/298 (15%)

Query: 204 PLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMV 263
                 +  S SL+ L +    + S I      +                        + 
Sbjct: 58  LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG----------------------IS 95

Query: 264 YLEHLRLSFNELEGGIPKFFGNMC--SLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKS 321
            L+ L L   E+ G  P          L  LNL N   + + + +        L+  LK 
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL--AELQQWLKPGLKV 153

Query: 322 LYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHF 381
           L +  + +   S         L  L L++NP       +      L  +   +       
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNP----ELGERGLISALCPLKFPT------- 202

Query: 382 PKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSN 441
              LQ      L +      S                LDL+ N ++      S  + +  
Sbjct: 203 ---LQVLA---LRNAGMETPSGVCSALAAARVQ-LQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 442 PGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSG 499
             +++S    + +   LP+  S L+LS NR   + S        ++  + L  N    
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDEL---PQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 43/231 (18%), Positives = 73/231 (31%), Gaps = 18/231 (7%)

Query: 530 GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGE--SLSNLIVL 587
           G       L   +        +       L+ L +    +   I         +S L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 588 SLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLM 647
           +L++ +  G  P  L +     +  L+L N+S      +        ++   P +K  L 
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA----ELQQWLKPGLK-VLS 155

Query: 648 LTWKGSEREYRSTLGLVKSLE---LSNNNLNG-------AVPEEIMDLVGLVALNLSKNH 697
           +    S       + +  +L    LS+N   G         P +   L  L   N     
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 698 LTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQ-LSGLSVMDLSYNNLS 747
            +G  S        L  LDLS N L     +      S L+ ++LS+  L 
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 33/175 (18%), Positives = 46/175 (26%), Gaps = 16/175 (9%)

Query: 61  ILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSG------SPIPEFIGSLSKL 114
           +   L+ +              +     L  L+LS N   G      +  P    +L  L
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 115 RYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLA 174
              +      +G          +LQ LDL  N L            S L  LNL  + L 
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 175 NSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSS 229
                    G    L  L L    L           +    +  L L  N    S
Sbjct: 267 QVPK-----GLPAKLSVLDLSYNRL-----DRNPSPDELPQVGNLSLKGNPFLDS 311

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 83.9 bits (208), Expect = 5e-17
 Identities = 88/467 (18%), Positives = 150/467 (32%), Gaps = 86/467 (18%)

Query: 88  DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDL----FGTVFAGPIPPQLGNLSRLQHLDL 143
           D++ L++   + S +   E +  L + + + L            I   L     L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 144 GSNYLFSTGNLDWLSHLSY----LRYLNLDESNLANSS--DWFQVIGKLHSLKTLSLHSC 197
            SN L   G    L  L      ++ L+L    L  +        +  L +L+ L L   
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 198 YL--PPVIPLSLNHLNSSTSLETLVLSDNNLTS----SIYPWLPNISSIFISIDLGFNQL 251
            L    +  L    L+    LE L L   +L++     +   L         + +  N +
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF-KELTVSNNDI 182

Query: 252 QGS----IPESFQH-MVYLEHLRLSFNELE----GGIPKFFGNMCSLITLNLSNNKLSGQ 302
             +    + +  +     LE L+L    +       +     +  SL  L L +NKL   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG-- 240

Query: 303 LSEIIQNLSSGCLE--NSLKSLYLE-NSLTGV----ISESFFSNISNLKELHLANNPL-- 353
               +  L  G L   + L++L++    +T      +     +   +LKEL LA N L  
Sbjct: 241 -DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGD 298

Query: 354 --------VLKLSHDWVPPFQLIIISLSSCKIGP----HFPKWLQTQNQIELLDISNTGI 401
                    L          QL  + + SC        HF   L     +  L ISN  +
Sbjct: 299 EGARLLCETLLEPG-----CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

Query: 402 SDT----IPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPP 457
            D     +        +    L LA   +            + +    +++         
Sbjct: 354 EDAGVRELCQGLGQPGSVLRVLWLADCDV------------SDSSCSSLAAT-------- 393

Query: 458 LPSNSSF--LNLSKNRFSGS-ISFLC---SISGSKLTYVDLSSNLLS 498
           L +N S   L+LS N    + I  L       G  L  + L     S
Sbjct: 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 82.3 bits (204), Expect = 1e-16
 Identities = 89/501 (17%), Positives = 164/501 (32%), Gaps = 109/501 (21%)

Query: 163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPP--VIPLSLNHLNSSTSLETLV 220
           ++ L++    L + + W +++  L   + + L  C L       +S + L  + +L  L 
Sbjct: 5   IQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELN 62

Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNEL--EGG 278
           L  N L                  D+G + +   +         ++ L L    L   G 
Sbjct: 63  LRSNELG-----------------DVGVHCVLQGLQTPSCK---IQKLSLQNCCLTGAGC 102

Query: 279 --IPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYLE-NSLTGVIS 333
             +      + +L  L+LS+N L       +Q L  G L+    L+ L LE  SL+    
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLG---DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159

Query: 334 ESFFS---NISNLKELHLANNPL----VLKLSHD-WVPPFQLIIISLSSCKIGP----HF 381
           E   S      + KEL ++NN +    V  L       P QL  + L SC +        
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 382 PKWLQTQNQIELLDISNTGISDT----IPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRF 437
              + ++  +  L + +  + D     +     + S++   L +    I           
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI----------- 268

Query: 438 GTSNPGIDISSNHFEGLIPPLPSNSS--FLNLSKNRFSGS----ISFLCSISGSKLTYVD 491
                    ++     L   L +  S   L+L+ N         +       G +L  + 
Sbjct: 269 ---------TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 492 LSSNLLSGK----LPDCWWTFDSLVILNLENNSF--SGRIPDSMGFLQN---IQTLSLHN 542
           + S   +                L+ L + NN    +G      G  Q    ++ L L +
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 543 NRLTGE----LSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKI 598
             ++      L+++      LR LDL  N L        G++    +V S++        
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCL--------GDAGILQLVESVRQPGCL--- 428

Query: 599 PFQLCQLAFLQVLDLSLNNIS 619
                    L+ L L     S
Sbjct: 429 ---------LEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 58/303 (19%), Positives = 101/303 (33%), Gaps = 53/303 (17%)

Query: 79  ISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRL 138
           +S  L  L  L+ L+LS N    + +      L                         RL
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD--------------------PQCRL 144

Query: 139 QHLDLGSNYLFSTGNLD---WLSHLSYLRYLNLDESNLANSSDWFQVIGKL-----HSLK 190
           + L L    L +         L      + L +  +++  +    +V+ +        L+
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG--VRVLCQGLKDSPCQLE 202

Query: 191 TLSLHSCYLPPVIPLSL-NHLNSSTSLETLVLSDNNLTSS----IYPWLPNISSIFISID 245
            L L SC +       L   + S  SL  L L  N L       + P L + SS   ++ 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 246 LGFNQLQ----GSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNM-----CSLITLNLSN 296
           +    +     G +    +    L+ L L+ NEL     +          C L +L + +
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 297 NKLSGQLSEIIQNLSSGCLEN-SLKSLYL-ENSLT--GV--ISESFFSNISNLKELHLAN 350
              +   +    + SS   +N  L  L +  N L   GV  + +      S L+ L LA+
Sbjct: 323 CSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 351 NPL 353
             +
Sbjct: 380 CDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.1 bits (175), Expect = 5e-13
 Identities = 92/515 (17%), Positives = 169/515 (32%), Gaps = 133/515 (25%)

Query: 288 SLITLNLSNNKLSGQ-LSEIIQNLSSGCLENSLKSLYLE-NSLT----GVISESFFSNIS 341
            + +L++   +LS    +E++  L         + + L+   LT      IS +   N  
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQ------CQVVRLDDCGLTEARCKDISSALRVN-P 56

Query: 342 NLKELHLANNPL----VLKLSHD-WVPPFQLIIISLSSCKIGP----HFPKWLQTQNQIE 392
            L EL+L +N L    V  +      P  ++  +SL +C +           L+T   ++
Sbjct: 57  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 393 LLDISNTGISDT----IPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISS 448
            L +S+  + D     + +   +   +   L L    +                    S+
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL--------------------SA 156

Query: 449 NHFEGLIPPLPSNSS--FLNLSKNRFSGS-ISFLCSI---SGSKLTYVDLSSNLLSGKLP 502
              E L   L +      L +S N  + + +  LC     S  +L  + L S  ++    
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT---S 213

Query: 503 DCWWTFD-------SLVILNLENNSF--SGRIPDSMGFLQ---NIQTLSLHNNRLTGE-- 548
           D             SL  L L +N     G      G L     ++TL +    +T +  
Sbjct: 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC 273

Query: 549 --LSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLA 606
             L    R    L+ L L  N L        G+  + L+  +L                 
Sbjct: 274 GDLCRVLRAKESLKELSLAGNEL--------GDEGARLLCETLLEPGCQ----------- 314

Query: 607 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKS 666
            L+ L +   + +     C ++F+++  +                            +  
Sbjct: 315 -LESLWVKSCSFT---AACCSHFSSVLAQNRF-------------------------LLE 345

Query: 667 LELSNNNLNGAVPEEIMDLVG-----LVALNLSKNHLTGQ----ISPKIGQLKSLDFLDL 717
           L++SNN L  A   E+   +G     L  L L+   ++      ++  +    SL  LDL
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 718 SRNQL----VGGIPSSLSQL-SGLSVMDLSYNNLS 747
           S N L    +  +  S+ Q    L  + L     S
Sbjct: 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.1 bits (162), Expect = 2e-11
 Identities = 67/302 (22%), Positives = 106/302 (35%), Gaps = 51/302 (16%)

Query: 79  ISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLS----KLRYLDL----FGTVFAGPIPP 130
           ++  L    D + L +S ND + + +      L     +L  L L      +     +  
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 131 QLGNLSRLQHLDLGSNYLFSTGNLD----WLSHLSYLRYLNLDESNLANS--SDWFQVIG 184
            + + + L+ L LGSN L   G  +     L   S LR L + E  +      D  +V+ 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 185 KLHSLKTLSLHSCYLPP--VIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI 242
              SLK LSL    L       L    L     LE+L +   + T+              
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA--------ACCSHF 333

Query: 243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFG-----NMCSLITLNLSNN 297
           S  L  N+              L  L++S N LE    +            L  L L++ 
Sbjct: 334 SSVLAQNRF-------------LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 298 KLSGQLSEIIQNLSSGCLEN-SLKSLYL-ENSLT--GV--ISESFFSNISNLKELHLANN 351
            +S        +L++  L N SL+ L L  N L   G+  + ES       L++L L + 
Sbjct: 381 DVS---DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437

Query: 352 PL 353
             
Sbjct: 438 YW 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.0 bits (190), Expect = 7e-15
 Identities = 77/514 (14%), Positives = 148/514 (28%), Gaps = 108/514 (21%)

Query: 132 LGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKT 191
              L+ L  LD  ++ +    ++  +  L+ L  L    +N+         + +  +L  
Sbjct: 38  EEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSNNITTLD-----LSQNTNLTY 89

Query: 192 LSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQL 251
           L+  S  L   + ++       T L  L    N LT       P ++     ++   N L
Sbjct: 90  LACDSNKL-TNLDVTPL-----TKLTYLNCDTNKLTKLDVSQNPLLT----YLNCARNTL 139

Query: 252 QGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLS 311
              I     H   L  L    N+    +         L TL+ S NK++      +    
Sbjct: 140 T-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT---ELDVSQNK 191

Query: 312 SGCLENSLKSLYLE-NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIII 370
                  L  L  + N++T +      +    L  L  ++N              +L  I
Sbjct: 192 ------LLNRLNCDTNNITKLD----LNQNIQLTFLDCSSN--------------KLTEI 227

Query: 371 SLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKL 430
            ++                Q+   D S   +++        L+     L      +    
Sbjct: 228 DVTPLT-------------QLTYFDCSVNPLTELDVSTLSKLTT----LHCIQTDLL--- 267

Query: 431 PNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYV 490
                        ID++ N          +   +      R    +    +   ++L  +
Sbjct: 268 ------------EIDLTHN----------TQLIYFQAEGCRKIKELDVTHN---TQLYLL 302

Query: 491 DLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELS 550
           D  +  ++ +L         LV L L N   +  +  S      +++LS  N  +     
Sbjct: 303 DCQAAGIT-ELDLSQNP--KLVYLYLNNTELT-ELDVSH--NTKLKSLSCVNAHIQD--F 354

Query: 551 SSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHG---KIPFQLCQLAF 607
           SS      L      +      +P     + S  I +S       G    I      +  
Sbjct: 355 SSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYD 413

Query: 608 LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPT 641
                ++  N+S   P     FT+         T
Sbjct: 414 QATNTITWENLSTDNPAVTYTFTSENGAIVGTVT 447

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.0 bits (190), Expect = 7e-15
 Identities = 69/432 (15%), Positives = 137/432 (31%), Gaps = 79/432 (18%)

Query: 81  PALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQH 140
             + KL  L  L  + N+ +   +       + L YL              +  L++L +
Sbjct: 58  TGIEKLTGLTKLICTSNNITTLDL----SQNTNLTYLACDSNKLTNL---DVTPLTKLTY 110

Query: 141 LDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLP 200
           L+  +N L     LD +S    L YLN   + L         +     L  L  H     
Sbjct: 111 LNCDTNKL---TKLD-VSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNKK- 160

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQ 260
               ++   +   T L TL  S N +T         ++ +    +   N +   +     
Sbjct: 161 ----ITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRL----NCDTNNIT-KLD--LN 209

Query: 261 HMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSS-GCLENSL 319
             + L  L  S N+L   I      +  L   + S N L+      +  L++  C++  L
Sbjct: 210 QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL 266

Query: 320 KSL---------YLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIII 370
             +         Y +      I E   ++ + L  L                    +  +
Sbjct: 267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA--------------GITEL 312

Query: 371 SLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK--- 427
            LS                ++  L ++NT +++        L +    L   +  I+   
Sbjct: 313 DLSQNP-------------KLVYLYLNNTELTELDVSHNTKLKS----LSCVNAHIQDFS 355

Query: 428 --GKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFS--GSISFLCSIS 483
             GK+P L++ F      I +           +  +   L+   N  +       +   +
Sbjct: 356 SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQA 415

Query: 484 GSKLTYVDLSSN 495
            + +T+ +LS++
Sbjct: 416 TNTITWENLSTD 427

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.1 bits (185), Expect = 3e-14
 Identities = 60/412 (14%), Positives = 127/412 (30%), Gaps = 57/412 (13%)

Query: 360 DWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFL 419
           DW P         ++ ++        +    +  LD  N+ I+D        L+   + L
Sbjct: 13  DWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTG-LTKL 69

Query: 420 DLASNQIK----GKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGS 475
              SN I      +  NL+         +   SN    L     +  ++LN   N+ +  
Sbjct: 70  ICTSNNITTLDLSQNTNLTY--------LACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL 121

Query: 476 ISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNI 535
                      LTY++ + N L+ ++         L  L+   N    ++  +      +
Sbjct: 122 DVSQN----PLLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKITKLDVTP--QTQL 172

Query: 536 QTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH 595
            TL    N++T            L  L+   N +  ++          L  L   SNK  
Sbjct: 173 TTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT-KLDL---NQNIQLTFLDCSSNKLT 225

Query: 596 GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSER 655
                 +  L  L   D S+N ++ ++    +  + +T        + +           
Sbjct: 226 E---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEI---------- 269

Query: 656 EYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFL 715
                    + +             ++     L  L+     +T      + Q   L +L
Sbjct: 270 ---DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYL 323

Query: 716 DLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGN 767
            L+  +L   +   +S  + L  +     ++     +V ++ + N+   A  
Sbjct: 324 YLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 62/408 (15%), Positives = 127/408 (31%), Gaps = 79/408 (19%)

Query: 216 LETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNEL 275
             + V +   + ++       ++++  S+D   + +   +    + +  L  L  + N +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATL-TSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNI 76

Query: 276 EGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISES 335
              +        +L  L   +NKL+   +  +  L+       L  L  + +    +++ 
Sbjct: 77  TT-LD--LSQNTNLTYLACDSNKLT---NLDVTPLTK------LTYLNCDTNK---LTKL 121

Query: 336 FFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLD 395
             S    L  L+ A N               L  I +S                Q+  LD
Sbjct: 122 DVSQNPLLTYLNCARN--------------TLTEIDVSHNT-------------QLTELD 154

Query: 396 ISNTGISDTIPDWFWNLSNKFSFLDLASNQIK----GKLPNLSSRFGTSNPGIDISSNHF 451
                    +       +   + LD + N+I      +   L+         ++  +N+ 
Sbjct: 155 CHLNKKITKLD--VTPQTQ-LTTLDCSFNKITELDVSQNKLLNR--------LNCDTNNI 203

Query: 452 EGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSL 511
             L        +FL+ S N+ +  I        ++LTY D S N L+ +L     T   L
Sbjct: 204 TKLDLNQNIQLTFLDCSSNKLT-EIDVT---PLTQLTYFDCSVNPLT-ELDV--STLSKL 256

Query: 512 VILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYG 571
             L+             +    N Q +                + +QL LLD     +  
Sbjct: 257 TTLHCIQTDLL-----EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI-T 310

Query: 572 EIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS 619
           E+          L+ L L + +   ++         L+ L     +I 
Sbjct: 311 ELDL---SQNPKLVYLYLNNTELT-ELDVSHNTK--LKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 73.6 bits (181), Expect = 7e-14
 Identities = 62/458 (13%), Positives = 132/458 (28%), Gaps = 84/458 (18%)

Query: 167 NLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNL 226
           +   +     +       +L +L +L  H+  +       +  +   T L  L+ + NN+
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSI-----TDMTGIEKLTGLTKLICTSNNI 76

Query: 227 TSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNM 286
           T+       N+      +    N+L  ++      +  L +L    N+L           
Sbjct: 77  TTLDLSQNTNL----TYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQN 126

Query: 287 CSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKEL 346
             L  LN + N L+         +        L  L         I++   +  + L  L
Sbjct: 127 PLLTYLNCARNTLT--------EIDVSHNTQ-LTELDCHL--NKKITKLDVTPQTQLTTL 175

Query: 347 HLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIP 406
             + N              ++  + +S  K              +  L+     I+  + 
Sbjct: 176 DCSFN--------------KITELDVSQNK-------------LLNRLNCDTNNITK-LD 207

Query: 407 DWFWNLSNKFSFLDLASNQIK----GKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNS 462
                     +FLD +SN++       L  L+          D S N    L     S  
Sbjct: 208 --LNQNIQ-LTFLDCSSNKLTEIDVTPLTQLTY--------FDCSVNPLTELDVSTLSKL 256

Query: 463 SFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFS 522
           + L+  +      +  +     ++L Y          +L     T   L +L+ +    +
Sbjct: 257 TTLHCIQTD----LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT--QLYLLDCQAAGIT 310

Query: 523 GRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLS 582
                 +     +  L L+N  LT        + ++L+ L      +  +  +     + 
Sbjct: 311 ---ELDLSQNPKLVYLYLNNTELT---ELDVSHNTKLKSLSCVNAHI-QDFSSV--GKIP 361

Query: 583 NLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG 620
            L        +        L   +    +   L +  G
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 77/423 (18%), Positives = 134/423 (31%), Gaps = 75/423 (17%)

Query: 85  KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLG 144
           +L  L  L+   +  +       I  L+ L  L              L   + L +L   
Sbjct: 40  QLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACD 93

Query: 145 SNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIP 204
           SN L    NLD ++ L+ L YLN D + L         + +   L  L+     L   I 
Sbjct: 94  SNKL---TNLD-VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTL-TEID 143

Query: 205 LSLNHLNSSTSLETLVLSDNNLTSSIY-PWLPNISSIFISIDLGFNQLQGSIPESFQHMV 263
           +S N     T L  L    N   + +       ++    ++D  FN++            
Sbjct: 144 VSHN-----TQLTELDCHLNKKITKLDVTPQTQLT----TLDCSFNKITEL---DVSQNK 191

Query: 264 YLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLY 323
            L  L    N +   +         L  L+ S+NKL+         +    L   L    
Sbjct: 192 LLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT--------EIDVTPLTQ-LTYFD 239

Query: 324 LE-NSLTGVISESFFSNISNLKELHLANNPLV-LKLSHDWVPPFQLIIISLSSCKIGPHF 381
              N LT +      S +S L  LH     L+ + L+H      QLI      C+     
Sbjct: 240 CSVNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTH----NTQLIYFQAEGCRKIKEL 291

Query: 382 PKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK----GKLPNLSSRF 437
              +    Q+ LLD    GI++ +            +L L + ++          L S  
Sbjct: 292 D--VTHNTQLYLLDCQAAGITE-LD--LSQNPK-LVYLYLNNTELTELDVSHNTKLKS-- 343

Query: 438 GTSNPGIDISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISGSKLTYVDLSSN 495
                 +   + H +     +    +      ++ +    I+       +    + +S +
Sbjct: 344 ------LSCVNAHIQDF-SSVGKIPALNNNFEAEGQT---ITMPKETLTNNSLTIAVSPD 393

Query: 496 LLS 498
           LL 
Sbjct: 394 LLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 68/512 (13%), Positives = 145/512 (28%), Gaps = 138/512 (26%)

Query: 249 NQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQ 308
            ++Q +   S + +  L  L    + +          +  L  L  ++N ++        
Sbjct: 28  FEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-------- 77

Query: 309 NLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLI 368
            L      N L  L  +++    ++    + ++ L  L+   N L      D      L 
Sbjct: 78  TLDLSQNTN-LTYLACDSNK---LTNLDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLT 130

Query: 369 IISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK- 427
            ++ +               N +  +D+S+              + + + LD   N+   
Sbjct: 131 YLNCAR--------------NTLTEIDVSH--------------NTQLTELDCHLNKKIT 162

Query: 428 ----GKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSIS 483
                    L++        +D S N    L        + LN   N             
Sbjct: 163 KLDVTPQTQLTT--------LDCSFNKITELDVSQNKLLNRLNCDTN------------- 201

Query: 484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNN 543
              +T +DL+ N+              L  L+  +N  +  I  +   L  +       N
Sbjct: 202 --NITKLDLNQNI-------------QLTFLDCSSNKLT-EIDVTP--LTQLTYFDCSVN 243

Query: 544 RLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLC 603
            LT          S+L  L   +  L  EI        + LI    +  +   ++   + 
Sbjct: 244 PLT---ELDVSTLSKLTTLHCIQTDLL-EIDL---THNTQLIYFQAEGCRKIKELD--VT 294

Query: 604 QLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL 663
               L +LD     I+ ++    +    +                               
Sbjct: 295 HNTQLYLLDCQAAGIT-ELD--LSQNPKLV------------------------------ 321

Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723
              L L+N  L   +   +     L +L+    H+       +G++ +L+    +  Q +
Sbjct: 322 --YLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTI 374

Query: 724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQ 755
                +L+  S    +     +  G    +  
Sbjct: 375 TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 9e-10
 Identities = 45/300 (15%), Positives = 91/300 (30%), Gaps = 41/300 (13%)

Query: 78  TISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSR 137
                +     L  L+ SFN  +       +     L  L+         +   L    +
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITK-LD--LNQNIQ 213

Query: 138 LQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSC 197
           L  LD  SN L     +D ++ L+ L Y +   + L         +  L  L TL     
Sbjct: 214 LTFLDCSSNKLTE---ID-VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCIQT 264

Query: 198 YLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPE 257
                  L    L  +T L             +   + + + +   +D     +   +  
Sbjct: 265 ------DLLEIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQL-YLLDCQAAGIT-ELD- 313

Query: 258 SFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN 317
                  L +L L+  EL   +     +   L +L+  N  +         + SS     
Sbjct: 314 -LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ--------DFSSVGKIP 361

Query: 318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKI 377
           +L + +     T  + +   +N  N   + ++ + L    +   + P    +   ++  I
Sbjct: 362 ALNNNFEAEGQTITMPKETLTN--NSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTI 419

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 1e-14
 Identities = 39/244 (15%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 110 SLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLD 169
           + ++    +L        +      L+ +  +   ++ +    ++  + +L  +  L L+
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 73

Query: 170 ESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSS 229
            + L +     + +  L +L  L L    +       L+ L     L++L L  N ++  
Sbjct: 74  GNKLTD----IKPLTNLKNLGWLFLDENKI-----KDLSSLKDLKKLKSLSLEHNGISD- 123

Query: 230 IYPWLPNISSI--FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMC 287
               +  +  +    S+ LG N++  +       +  L+ L L  N++   I      + 
Sbjct: 124 ----INGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLT 175

Query: 288 SLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELH 347
            L  L LS N +S      ++ L+   L+N L  L L +        +  SN+     + 
Sbjct: 176 KLQNLYLSKNHIS-----DLRALAG--LKN-LDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 348 LANN 351
             + 
Sbjct: 228 NTDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 2e-13
 Identities = 51/286 (17%), Positives = 102/286 (35%), Gaps = 29/286 (10%)

Query: 81  PALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQH 140
               +L+ +  +  + +D       + I  L  +  L L G      I P L NL  L  
Sbjct: 37  VTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGW 91

Query: 141 LDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLP 200
           L L  N +    +L  L  L  L+ L+L+ + +++       +  L  L++L L +  + 
Sbjct: 92  LFLDENKI---KDLSSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKI- 143

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTS-SIYPWLPNISSIFISIDLGFNQLQGSIPESF 259
                 +  L+  T L+TL L DN ++       L  + ++++S     N +  S   + 
Sbjct: 144 ----TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS----KNHI--SDLRAL 193

Query: 260 QHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSL 319
             +  L+ L L   E          N+    T+  ++  L        + +S        
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL-----VTPEIISDDGDYEKP 248

Query: 320 KSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF 365
              +     T  +S  F+  ++  K     +  +   L   +   +
Sbjct: 249 NVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.8 bits (170), Expect = 2e-12
 Identities = 48/269 (17%), Positives = 95/269 (35%), Gaps = 33/269 (12%)

Query: 390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----GKLPNLSSRFGTSNPGI 444
           +    ++    ++D +      L++    +   ++ IK       LPN++         +
Sbjct: 22  ETIKDNLKKKSVTDAVT--QNELNS-IDQIIANNSDIKSVQGIQYLPNVTK--------L 70

Query: 445 DISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLP 502
            ++ N     I PL +  +  +L L +N+    +S L  +   KL  + L  N +S  + 
Sbjct: 71  FLNGNKLTD-IKPLTNLKNLGWLFLDENKIK-DLSSLKDLK--KLKSLSLEHNGIS-DIN 125

Query: 503 DCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562
                   L  L L NN  +      +  L  + TLSL +N+++          ++L+ L
Sbjct: 126 GLV-HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNL 180

Query: 563 DLGKNALYGEIPTWMG-ESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK 621
            L KN     I        L NL VL L S +   K       L     +  +  ++   
Sbjct: 181 YLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

Query: 622 IPKCFNNFTAMTQERSSDPTIKDKLMLTW 650
                +        +   P   +++   +
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVSFIF 265

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 46/235 (19%), Positives = 79/235 (33%), Gaps = 51/235 (21%)

Query: 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEI 573
               +       PD           +L    +T     +    + +  +    +    +I
Sbjct: 4   TITVSTPIKQIFPDDA--FAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNS----DI 55

Query: 574 PTWMG-ESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM 632
            +  G + L N+  L L  NK    I   L  L  L  L L  N I        ++   +
Sbjct: 56  KSVQGIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK-----DLSSLKDL 108

Query: 633 TQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALN 692
            +                             +KSL L +N ++      ++ L  L +L 
Sbjct: 109 KK-----------------------------LKSLSLEHNGIS--DINGLVHLPQLESLY 137

Query: 693 LSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
           L  N +T  I+  + +L  LD L L  NQ+       L+ L+ L  + LS N++S
Sbjct: 138 LGNNKIT-DITV-LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.5 bits (146), Expect = 2e-09
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 24/163 (14%)

Query: 79  ISPALLKLHDLRHLNLSFN---DFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNL 135
           I P L  L +L  L L  N   D S       +  L KL+ L L     +  I   L +L
Sbjct: 80  IKP-LTNLKNLGWLFLDENKIKDLSS------LKDLKKLKSLSLEHNGISD-ING-LVHL 130

Query: 136 SRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLH 195
            +L+ L LG+N +    ++  LS L+ L  L+L+++ +++       +  L  L+ L L 
Sbjct: 131 PQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLS 183

Query: 196 SCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNIS 238
             ++       L  L    +L+ L L      +       N+ 
Sbjct: 184 KNHIS-----DLRALAGLKNLDVLELFSQECLNKPINHQSNLV 221

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.1 bits (106), Expect = 1e-04
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723
                L   ++  AV +   +L  +  +  + + +   +   I  L ++  L L+ N+L 
Sbjct: 23  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT 78

Query: 724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQS 758
             I   L+ L  L  + L  N +   + ++  L+ 
Sbjct: 79  -DI-KPLTNLKNLGWLFLDENKIK-DLSSLKDLKK 110

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.2 bits (184), Expect = 4e-14
 Identities = 41/268 (15%), Positives = 77/268 (28%), Gaps = 29/268 (10%)

Query: 105 PEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLR 164
           P+     S +   DL        +P     +            L       W    +   
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE 349

Query: 165 YLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDN 224
            L   E ++  S+     +     L+ L   + +    I L +  L+     +  +   +
Sbjct: 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 225 NLTSSIYPWLPNISSIFIS-----------------IDLGFNQLQGSIPESFQHMVYLEH 267
            L +        +  +                    + L    L  ++    + ++ + H
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTH 467

Query: 268 LRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLE-N 326
           L LS N L   +P     +  L  L  S+N L   +  +        L   L+ L L  N
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDGV------ANLPR-LQELLLCNN 518

Query: 327 SLTGVISESFFSNISNLKELHLANNPLV 354
            L    +     +   L  L+L  N L 
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 2e-11
 Identities = 55/316 (17%), Positives = 92/316 (29%), Gaps = 23/316 (7%)

Query: 449 NHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTF 508
              E        + S      +        + S  G+ L  VD +   +  + PD     
Sbjct: 237 GRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296

Query: 509 DSLVILNLENNSFSGRIPDSMGF----LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564
             + + +L   S + ++P           + Q   +                 QL   +L
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCEL 356

Query: 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK 624
                   +     ES   L  L  ++      I   +  L  L     +L   S     
Sbjct: 357 SVEKS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414

Query: 625 CFNNFTAMTQERSSDPTIKDKLMLTWKGSER-----------EYRSTLGLVKSLELSNNN 673
                  +   RS        L + +                 +   L LV  L+LS+N 
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR 474

Query: 674 LNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPS--SLS 731
           L  A+P  +  L  L  L  S N L   +   +  L  L  L L  N+L     +   L 
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRL-QQSAAIQPLV 530

Query: 732 QLSGLSVMDLSYNNLS 747
               L +++L  N+L 
Sbjct: 531 SCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 8e-09
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 87  HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSN 146
            D+R L+L+  D +   +   +  L  + +LDL        +PP L  L  L+ L    N
Sbjct: 441 ADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDN 496

Query: 147 YLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHS---CYLPPVI 203
            L +   +D +++L  L+ L L  + L  S+   Q +     L  L+L     C    + 
Sbjct: 497 ALEN---VDGVANLPRLQELLLCNNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

Query: 204 PLSLNHLNSSTSLET 218
                 L S +S+ T
Sbjct: 553 ERLAEMLPSVSSILT 567

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 7e-08
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 81  PALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG---TVFAGPIPPQLGNLSR 137
             L +L  + HL+LS N      +P  + +L  L  L           G     + NL R
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDG-----VANLPR 509

Query: 138 LQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSD-WFQVIGKLHSLKTL 192
           LQ L L +N L  +  +  L     L  LNL  ++L        ++   L S+ ++
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 5e-07
 Identities = 48/315 (15%), Positives = 97/315 (30%), Gaps = 48/315 (15%)

Query: 285 NMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLK 344
            M +L+ +           +   +N  S      L +  L + L        ++   + K
Sbjct: 270 RMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQK 329

Query: 345 ELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDT 404
           E  L  +        D     QL    LS  +        L++  +++ L+  N     T
Sbjct: 330 ECVLLKDRPEC-WCRDSATDEQLFRCELS-VEKSTVLQSELESCKELQELEPENKWCLLT 387

Query: 405 IPDWFWNLSNKFSFLDLASNQIKG--KLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNS 462
           I      L      L      ++    L  +          +         ++    ++ 
Sbjct: 388 I----ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443

Query: 463 SFLNLSKNRFSGSISFLCSISG-SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSF 521
             L+L+       ++ LC +     +T++DLS N L                        
Sbjct: 444 RVLHLAHKD----LTVLCHLEQLLLVTHLDLSHNRLR----------------------- 476

Query: 522 SGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMG--- 578
              +P ++  L+ ++ L   +N L   +     N  +L+ L L  N     +        
Sbjct: 477 --ALPPALAALRCLEVLQASDNALE-NV-DGVANLPRLQELLLCNN----RLQQSAAIQP 528

Query: 579 -ESLSNLIVLSLKSN 592
             S   L++L+L+ N
Sbjct: 529 LVSCPRLVLLNLQGN 543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 42/244 (17%), Positives = 94/244 (38%), Gaps = 31/244 (12%)

Query: 110 SLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLD 169
           +L+    +    +     +     +L  +  L      +     ++ + +L+ L  L L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELK 71

Query: 170 ESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSS 229
           ++ + +       +  L  +  L L    L      +++ +    S++TL L+   +T  
Sbjct: 72  DNQITD----LAPLKNLTKITELELSGNPL-----KNVSAIAGLQSIKTLDLTSTQITD- 121

Query: 230 IYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSL 289
               L  +S++   + L  NQ+  +       +  L++L +   ++    P    N+  L
Sbjct: 122 -VTPLAGLSNL-QVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKL 175

Query: 290 ITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLA 349
            TL   +NK+S  +S +           +L  ++L+N    +   S  +N SNL  + L 
Sbjct: 176 TTLKADDNKIS-DISPLASL-------PNLIEVHLKN--NQISDVSPLANTSNLFIVTLT 225

Query: 350 NNPL 353
           N  +
Sbjct: 226 NQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 45/272 (16%), Positives = 99/272 (36%), Gaps = 34/272 (12%)

Query: 81  PALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQH 140
                L  +  L+      +     E +  L+ L  L+L        + P L NL+++  
Sbjct: 35  VTQADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKDNQITD-LAP-LKNLTKITE 89

Query: 141 LDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLP 200
           L+L  N L    N+  ++ L  ++ L+L  + + +       +  L +L+ L L    + 
Sbjct: 90  LELSGNPL---KNVSAIAGLQSIKTLDLTSTQITD----VTPLAGLSNLQVLYLDLNQIT 142

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTS-SIYPWLPNISSIFISIDLGFNQLQGSIPESF 259
                +++ L   T+L+ L + +  ++  +    L  ++    ++    N++   I    
Sbjct: 143 -----NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT----TLKADDNKIS-DIS-PL 191

Query: 260 QHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSL 319
             +  L  + L  N++    P    N  +L  + L+N          I N       N +
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT--------ITNQPVFYNNNLV 241

Query: 320 KSLYLENSLTGVISESFFSNISNLKELHLANN 351
               ++      I+ +  S+       +L  N
Sbjct: 242 VPNVVKGPSGAPIAPATISDNGTYASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 60/321 (18%), Positives = 120/321 (37%), Gaps = 46/321 (14%)

Query: 214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFN 273
            +   +    +N+T ++     ++  I  ++      +  +I E  Q++  L  L L  N
Sbjct: 19  ANAIKIAAGKSNVTDTVT--QADLDGI-TTLSAFGTGVT-TI-EGVQYLNNLIGLELKDN 73

Query: 274 ELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVIS 333
           ++    P    N+  +  L LS N L       +  ++   L++ +K+L L +  T +  
Sbjct: 74  QITDLAP--LKNLTKITELELSGNPLK-----NVSAIAG--LQS-IKTLDLTS--TQITD 121

Query: 334 ESFFSNISNLKELHLANNPLVLKLSHDWVPPF----QLIIISLSSCKIGPHFPKWLQTQN 389
            +  + +SNL+ L+L  N +        + P      L  +S+ + ++    P  L   +
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITN------ISPLAGLTNLQYLSIGNAQVSDLTP--LANLS 173

Query: 390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----GKLPNLSSRFGTSNPGI 444
           ++  L   +  ISD  P    +L N    + L +NQI          NL          +
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNL-IEVHLKNNQISDVSPLANTSNLFI--------V 222

Query: 445 DISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDC 504
            +++           +N    N+ K      I+             +L+ NL S  + + 
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSF-INNV 281

Query: 505 WWTFDSLVILNLENNSFSGRI 525
            +TF+  V        FSG +
Sbjct: 282 SYTFNQSVTFKNTTVPFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 27/257 (10%)

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
             + + +    ++ +  +  +   L  I TLS     +T       +  + L  L+L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQAD--LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73

Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
            +    P    ++L+ +  L L  N    K    +  L  ++ LDL+   I+   P    
Sbjct: 74  QITDLAPL---KNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 628 NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVG 687
             + +         I +   L          + L  ++ L + N  ++      + +L  
Sbjct: 127 GLSNLQVLYLDLNQITNISPL----------AGLTNLQYLSIGNAQVSDL--TPLANLSK 174

Query: 688 LVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
           L  L    N ++  ISP +  L +L  + L  NQ+     S L+  S L ++ L+   ++
Sbjct: 175 LTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTIT 230

Query: 748 GKIPTVTQLQSFNDTVY 764
            +           + V 
Sbjct: 231 NQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 50/260 (19%), Positives = 97/260 (37%), Gaps = 33/260 (12%)

Query: 390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----GKLPNLSSRFGTSNPGI 444
               +    + ++DT+     +L    + L      +        L NL          +
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDG-ITTLSAFGTGVTTIEGVQYLNNLIG--------L 68

Query: 445 DISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLP 502
           ++  N     + PL + +    L LS N    ++S +  +    +  +DL+S  ++   P
Sbjct: 69  ELKDNQITD-LAPLKNLTKITELELSGNPLK-NVSAIAGLQ--SIKTLDLTSTQITDVTP 124

Query: 503 DCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562
                  +L +L L+ N  +   P  +  L N+Q LS+ N +++    +   N S+L  L
Sbjct: 125 LA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTL 178

Query: 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI 622
               N +  +I      SL NLI + LK+N+     P      + L ++ L+   I+ + 
Sbjct: 179 KADDNKI-SDISPL--ASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQP 233

Query: 623 PKCFNNFTAMTQERSSDPTI 642
               NN       +      
Sbjct: 234 VFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 50/243 (20%)

Query: 516 LENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT 575
            +  + +   PD    L N   ++   + +T     +  +   +  L      +   I  
Sbjct: 4   TQPTAINVIFPDPA--LANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGV-TTIEG 58

Query: 576 WMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 635
              + L+NLI L LK N+    +   L  L  +  L+LS N +        +    +   
Sbjct: 59  V--QYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-----VSAIAGLQS- 108

Query: 636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSK 695
                                       +K+L+L++  +       +  L  L  L L  
Sbjct: 109 ----------------------------IKTLDLTSTQITD--VTPLAGLSNLQVLYLDL 138

Query: 696 NHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQ 755
           N +T  ISP +  L +L +L +   Q+     + L+ LS L+ +    N +S  I  +  
Sbjct: 139 NQIT-NISP-LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKIS-DISPLAS 193

Query: 756 LQS 758
           L +
Sbjct: 194 LPN 196

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 45/261 (17%), Positives = 97/261 (37%), Gaps = 27/261 (10%)

Query: 486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRL 545
               +    + ++  +       D +  L+      +    + + +L N+  L L +N++
Sbjct: 20  NAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75

Query: 546 TGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQL 605
           T    +  +N +++  L+L  N L   +       L ++  L L S +     P  L  L
Sbjct: 76  TD--LAPLKNLTKITELELSGNPL-KNVSAI--AGLQSIKTLDLTSTQITDVTP--LAGL 128

Query: 606 AFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVK 665
           + LQVL L LN I+   P      T +      +  + D   L          + L  + 
Sbjct: 129 SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPL----------ANLSKLT 176

Query: 666 SLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGG 725
           +L+  +N ++      +  L  L+ ++L  N ++  +SP +    +L  + L+   +   
Sbjct: 177 TLKADDNKISDI--SPLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQ 232

Query: 726 IPSSLSQLSGLSVMDLSYNNL 746
                + L   +V+       
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 59/313 (18%), Positives = 106/313 (33%), Gaps = 88/313 (28%)

Query: 265 LEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL 324
              +    + +   +     ++  + TL+     ++    E +Q L++      L  L L
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNN------LIGLEL 70

Query: 325 -ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPK 383
            +N +T +   +   N++ + EL L+ NPL               + +++  +       
Sbjct: 71  KDNQITDL---APLKNLTKITELELSGNPLK-------------NVSAIAGLQ------- 107

Query: 384 WLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----GKLPNLSSRFG 438
                  I+ LD+++T I+D  P     LSN    L L  NQI        L NL     
Sbjct: 108 ------SIKTLDLTSTQITDVTP--LAGLSN-LQVLYLDLNQITNISPLAGLTNLQY--- 155

Query: 439 TSNPGIDISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNL 496
                + I +      + PL + S    L    N+ S  IS L S+    L  V L +N 
Sbjct: 156 -----LSIGNAQVSD-LTPLANLSKLTTLKADDNKIS-DISPLASLP--NLIEVHLKNNQ 206

Query: 497 LSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNC 556
           +S              +  L N               N+  ++L N  +T +      N 
Sbjct: 207 IS-------------DVSPLAN-------------TSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 557 SQLRLLDLGKNAL 569
               ++     A 
Sbjct: 241 VVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 49/290 (16%), Positives = 101/290 (34%), Gaps = 71/290 (24%)

Query: 318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKI 377
           +   +      + V      +++  +  L                      + ++     
Sbjct: 20  NAIKIAAGK--SNVTDTVTQADLDGITTLSAFGTG----------------VTTIEG--- 58

Query: 378 GPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----GKLPN 432
                  +Q  N +  L++ +  I+D  P    NL+   + L+L+ N +K       L +
Sbjct: 59  -------VQYLNNLIGLELKDNQITDLAP--LKNLTK-ITELELSGNPLKNVSAIAGLQS 108

Query: 433 LSSRFGTSNPGIDISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISGSKLTYV 490
           + +        +D++S      + PL   S+   L L  N+ + +IS L  +  + L Y+
Sbjct: 109 IKT--------LDLTSTQITD-VTPLAGLSNLQVLYLDLNQIT-NISPLAGL--TNLQYL 156

Query: 491 DLSSNLLS-----GKLPDCWWTFDSLVILNLENNSFSGRIPDSMGF--LQNIQTLSLHNN 543
            + +  +S       L         L  L  ++N    +I D      L N+  + L NN
Sbjct: 157 SIGNAQVSDLTPLANLS-------KLTTLKADDN----KISDISPLASLPNLIEVHLKNN 205

Query: 544 RLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNK 593
           +++    S   N S L ++ L    +    P +   +L    V+   S  
Sbjct: 206 QISDV--SPLANTSNLFIVTLTNQTIT-NQPVFYNNNLVVPNVVKGPSGA 252

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 55/270 (20%), Positives = 84/270 (31%), Gaps = 61/270 (22%)

Query: 455 IPP-LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVI 513
           IP  LP ++  L+LS N     +      S  +L  +DLS   +                
Sbjct: 22  IPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ--------------- 65

Query: 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEI 573
             +E+ ++          L ++ TL L  N +      +F   S L+ L   +  L   +
Sbjct: 66  -TIEDGAYQS--------LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SL 115

Query: 574 PTWMGESLSNLIVLSLKSNKFHGKIPFQ--LCQLAFLQVLDLSLNNISGKIPKCFNNFTA 631
             +    L  L  L++  N              L  L+ LDLS N I             
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 632 MTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVAL 691
           M                              L  SL+LS N +N  +       + L  L
Sbjct: 175 MPL----------------------------LNLSLDLSLNPMN-FIQPGAFKEIRLKEL 205

Query: 692 NLSKNHLTGQISPKI-GQLKSLDFLDLSRN 720
            L  N L   +   I  +L SL  + L  N
Sbjct: 206 ALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 22/148 (14%)

Query: 214 TSLETLVLSDNNLTSSIYPWLPNISSIFISI------DLGFNQLQGSIPES-FQHMVYLE 266
            S + L LS N L       L   S  F S       DL   ++Q +I +  +Q + +L 
Sbjct: 28  FSTKNLDLSFNPLRH-----LG--SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 79

Query: 267 HLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-E 325
            L L+ N ++      F  + SL  L      L+   +  I +L +      LK L +  
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT------LKELNVAH 133

Query: 326 NSLTGVISESFFSNISNLKELHLANNPL 353
           N +       +FSN++NL+ L L++N +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 15/216 (6%)

Query: 534 NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNK 593
           + + L L  N L    S SF +  +L++LDL +  +   I     +SLS+L  L L  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNP 87

Query: 594 FHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGS 653
                      L+ LQ L     N++        +   + +   +   I+          
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-------SFK 140

Query: 654 EREYRSTLGLVKSLELSNNNLNGAVPEEIMD-LVGL----VALNLSKNHLTGQISPKIGQ 708
             EY S L  ++ L+LS+N +  ++    +  L  +    ++L+LS N +   I P   +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

Query: 709 LKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN 744
              L  L L  NQL         +L+ L  + L  N
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 44/197 (22%), Positives = 72/197 (36%), Gaps = 44/197 (22%)

Query: 85  KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQL-GNLSRLQHLDL 143
            L  L  L L+ N      +  F G LS L+ L    T  A  +     G+L  L+ L++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLAS-LENFPIGHLKTLKELNV 131

Query: 144 GSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVI 203
             N + S    ++ S+L+ L +L+L  + + +       +  LH +  L+L        +
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLS-------L 182

Query: 204 PLSLNHLNS-------STSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIP 256
            LSLN +N           L+ L L  N L S     +P                     
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-----VP--------------------D 217

Query: 257 ESFQHMVYLEHLRLSFN 273
             F  +  L+ + L  N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 43/201 (21%)

Query: 582 SNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPT 641
            +   L L  N       +       LQVLDLS   I       + + + ++        
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST------- 80

Query: 642 IKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTG 700
                                    L L+ N +  ++       L  L  L   + +L  
Sbjct: 81  -------------------------LILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA- 113

Query: 701 QISPKI-GQLKSLDFLDLSRNQL-VGGIPSSLSQLSGLSVMDLSYNNLSGKIPT-----V 753
            +     G LK+L  L+++ N +    +P   S L+ L  +DLS N +   I       +
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVL 172

Query: 754 TQLQSFNDTVYAGNPELCGLP 774
            Q+   N ++      +  + 
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQ 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 24/173 (13%), Positives = 65/173 (37%), Gaps = 21/173 (12%)

Query: 183 IGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIF- 241
             +++SL  ++L +  +       L  +  + +++ L +++ + T+        IS +  
Sbjct: 40  EAQMNSLTYITLANINVT-----DLTGIEYAHNIKDLTINNIHATN-----YNPISGLSN 89

Query: 242 -ISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLS 300
              + +    +      +   +  L  L +S +  +  I      +  + +++LS N   
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 301 GQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
             +   ++ L        LKSL ++    GV       +   L +L+  +  +
Sbjct: 150 TDIMP-LKTLP------ELKSLNIQF--DGVHDYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 12/144 (8%)

Query: 85  KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLG 144
             H+++ L ++    +       I  LS L  L + G        P L  L+ L  LD+ 
Sbjct: 64  YAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 145 SNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIP 204
            +       L  ++ L  +  ++L  +           +  L  LK+L++    +     
Sbjct: 121 HSAH-DDSILTKINTLPKVNSIDLSYNGAITD---IMPLKTLPELKSLNIQFDGV----- 171

Query: 205 LSLNHLNSSTSLETLVLSDNNLTS 228
                +     L  L      +  
Sbjct: 172 HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 30/169 (17%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 133 GNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTL 192
             ++ L ++ L +  +    +L  + +   ++ L ++  +  N +     I  L +L+ L
Sbjct: 41  AQMNSLTYITLANINV---TDLTGIEYAHNIKDLTINNIHATNYN----PISGLSNLERL 93

Query: 193 SLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQ 252
            +    +      +L+ L   TSL  L +S +    SI   +  +  +  SIDL +N   
Sbjct: 94  RIMGKDVTSDKIPNLSGL---TSLTLLDISHSAHDDSILTKINTLPKV-NSIDLSYNGAI 149

Query: 253 GSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG 301
             I    + +  L+ L + F+ +         +   L  L   +  + G
Sbjct: 150 TDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 23/170 (13%), Positives = 58/170 (34%), Gaps = 37/170 (21%)

Query: 579 ESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS 638
           E   N+  L++ +       P  +  L+ L+ L +   +++       +  T++T     
Sbjct: 63  EYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT----- 115

Query: 639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHL 698
                                       L++S++  + ++  +I  L  + +++LS N  
Sbjct: 116 ---------------------------LLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 699 TGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG 748
              I P +  L  L  L++  + +       +     L+ +      + G
Sbjct: 149 ITDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 18/161 (11%), Positives = 53/161 (32%), Gaps = 19/161 (11%)

Query: 465 LNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLS-----GKLPDCWWTFDSLVILNLENN 519
           + L+    +  ++ +       +  + +++   +       L        +L  L +   
Sbjct: 49  ITLANINVT-DLTGIEYAH--NIKDLTINNIHATNYNPISGLS-------NLERLRIMGK 98

Query: 520 SFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGE 579
             +     ++  L ++  L + ++     + +      ++  +DL  N    +I     +
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--K 156

Query: 580 SLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG 620
           +L  L  L+++ +  H     +      L  L      I G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724
           K L ++N +        I  L  L  L +    +T    P +  L SL  LD+S +    
Sbjct: 69  KDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQS 758
            I + ++ L  ++ +DLSYN     I  +  L  
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 20/184 (10%), Positives = 53/184 (28%), Gaps = 38/184 (20%)

Query: 243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQ 302
            I L    +   +    ++   ++ L ++              + +L  L +    ++  
Sbjct: 48  YITLANINVT-DL-TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSD 103

Query: 303 LSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWV 362
               +  L+S      L  L + +S       +  + +  +  + L+ N  +  +     
Sbjct: 104 KIPNLSGLTS------LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---- 153

Query: 363 PPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLA 422
                    L +               +++ L+I   G+ D       +     + L   
Sbjct: 154 --------PLKTLP-------------ELKSLNIQFDGVHDYRG--IEDFPK-LNQLYAF 189

Query: 423 SNQI 426
           S  I
Sbjct: 190 SQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 32/215 (14%), Positives = 62/215 (28%), Gaps = 43/215 (20%)

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
           F + +   L  +S +     +   + ++  ++L N  +T    +       ++ L +   
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI 76

Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
                 P      LSNL  L +            L  L  L +LD+S +     I    N
Sbjct: 77  HATNYNPI---SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 628 NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVG 687
               +                                 S++LS N     +   +  L  
Sbjct: 134 TLPKVN--------------------------------SIDLSYNGAITDI-MPLKTLPE 160

Query: 688 LVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL 722
           L +LN+  + +       I     L+ L      +
Sbjct: 161 LKSLNIQFDGVHD-YRG-IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 62  LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG 121
           L +L+ +      +     P L  L  L  L++S +    S +   I +L K+  +DL  
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSY 145

Query: 122 TVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDE 170
                 I P L  L  L+ L++  + +    +   +     L  L    
Sbjct: 146 NGAITDIMP-LKTLPELKSLNIQFDGV---HDYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 389 NQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----GKLPNLSSRFGTSNPG 443
           N +  + ++N  ++D          N    L + +           L NL          
Sbjct: 44  NSLTYITLANINVTDLTG--IEYAHN-IKDLTINNIHATNYNPISGLSNLERLRIMGKDV 100

Query: 444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISG-SKLTYVDLSSNLLSGKLP 502
                 +  GL     ++ + L++S +    SI  L  I+   K+  +DLS N     + 
Sbjct: 101 TSDKIPNLSGL-----TSLTLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGAITDIM 153

Query: 503 DCWWTFDSLVILNLENNSFSGRIPDSMGF--LQNIQTLSLHNNRLTGE 548
               T   L  LN++ +     + D  G      +  L   +  + G+
Sbjct: 154 PLK-TLPELKSLNIQFD----GVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 43/244 (17%), Positives = 80/244 (32%), Gaps = 25/244 (10%)

Query: 114 LRYLDLFGTVFAGPIPPQ-LGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESN 172
              L    T     I          L+ +++  N +      D  S+L  L  + ++++N
Sbjct: 32  AIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 173 LANS--SDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSI 230
                  + FQ    L +L+ L + +  +  +  +   H         L + DN    +I
Sbjct: 91  NLLYINPEAFQ---NLPNLQYLLISNTGIKHLPDVHKIHS---LQKVLLDIQDNINIHTI 144

Query: 231 YP-WLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSL 289
                  +S   + + L  N +Q     +F      E      N LE      F      
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204

Query: 290 ITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYLENSLTGVISESFFSNISNLKELH 347
           + L++S  +        I +L S  LEN   L++     +L  + +      +  L E  
Sbjct: 205 VILDISRTR--------IHSLPSYGLENLKKLRARST-YNLKKLPT---LEKLVALMEAS 252

Query: 348 LANN 351
           L   
Sbjct: 253 LTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 40/281 (14%), Positives = 91/281 (32%), Gaps = 41/281 (14%)

Query: 215 SLETLVLSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFN 273
           S    +  ++ +T      +P ++    I +     +L+     +F     LE + +S N
Sbjct: 10  SNRVFLCQESKVTE-----IPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 64

Query: 274 ELEGGIPKF-FGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYLENSLTG 330
           ++   I    F N+  L  + +            +  ++    +N  +L+ L + N+   
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKANN-------LLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 331 VISESFFSNISNLKELHLANNPLVLKLSHDWVP--PFQLIIISLSSCKIGPHFPKWLQTQ 388
            + +    +      L + +N  +  +  +      F+ +I+ L+   I           
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177

Query: 389 NQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISS 448
              EL    N  + +   D F   S     LD++  +I                   + S
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASG-PVILDISRTRIH-----------------SLPS 219

Query: 449 NHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTY 489
              E L           +    +   ++  L ++  + LTY
Sbjct: 220 YGLENL-----KKLRARSTYNLKKLPTLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 35/243 (14%), Positives = 71/243 (29%), Gaps = 21/243 (8%)

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSS-FRNCSQLRLLDLGK 566
             + + L             +     +++ + +  N +   + +  F N  +L  + + K
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 567 NALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP-KC 625
                 I     ++L NL  L + +                  +LD+  N     I    
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 626 FNNFTAMTQERSSDPTIKDKLMLTW---KGSEREYRSTLGLVKSLELSNNNLNGAVPEEI 682
           F   +  +            L L     +       +   L +     NNNL     +  
Sbjct: 149 FVGLSFESVI----------LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 683 MDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDL 741
               G V L++S+  +   +       LK L        + +     +L +L  L    L
Sbjct: 199 HGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLP----TLEKLVALMEASL 253

Query: 742 SYN 744
           +Y 
Sbjct: 254 TYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 41/238 (17%), Positives = 75/238 (31%), Gaps = 40/238 (16%)

Query: 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEI 573
              + +  +  IP      +N   L     +L      +F     L  +++ +N +   I
Sbjct: 14  FLCQESKVT-EIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 574 PTWMGESLSNLIVLSL-KSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM 632
              +  +L  L  + + K+N      P     L  LQ L +S   I   +P    +    
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD--VHKIHS 127

Query: 633 TQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD--LVGLVA 690
            Q                                L++ +N     +            V 
Sbjct: 128 LQ-----------------------------KVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 691 LNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPS-SLSQLSGLSVMDLSYNNLS 747
           L L+KN +  +I         LD L+LS N  +  +P+      SG  ++D+S   + 
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 47/309 (15%), Positives = 95/309 (30%), Gaps = 51/309 (16%)

Query: 79  ISPALLKLHDLRHLNLSFNDFS---GSPIPEFIGSLSKLRYLDL----------FGTVFA 125
           +   LL+   ++ + LS N         + E I S   L   +                 
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 126 GPIPPQLGNLSRLQHLDLGSNYLFSTGNL---DWLSHLSYLRYLNLDESNLANSSDWFQV 182
             +   L    +L  + L  N    T      D+LS  + L +L L  + L         
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL--GPQAGAK 141

Query: 183 IGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLT----SSIYPWLPNIS 238
           I +       +L    +            ++  L +++   N L             +  
Sbjct: 142 IAR-------ALQELAV-------NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187

Query: 239 SIFISIDLGFNQL-----QGSIPESFQHMVYLEHLRLSFNEL--EGG--IPKFFGNMCSL 289
            +  ++ +  N +     +  + E   +   L+ L L  N     G   +     +  +L
Sbjct: 188 LL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246

Query: 290 ITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLE-NSLTG----VISESFFSNISNLK 344
             L L++  LS + +  + +  S      L++L L+ N +       +       + +L 
Sbjct: 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306

Query: 345 ELHLANNPL 353
            L L  N  
Sbjct: 307 FLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 63/347 (18%), Positives = 106/347 (30%), Gaps = 79/347 (22%)

Query: 265 LEHLRLSFNEL--EG--GIPKFFGNMCSLITLNLSNNKLSGQ----LSEIIQNLSSGCLE 316
           +E   L  + +  E    +        S+  + LS N +  +    LSE I +       
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD---- 61

Query: 317 NSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCK 376
             L+     +  TG + +     +  L +  L   P             +L  + LS   
Sbjct: 62  --LEIAEFSDIFTGRVKDEIPEALRLLLQA-LLKCP-------------KLHTVRLSDNA 105

Query: 377 IGP----HFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPN 432
            GP        +L     +E L + N G+          ++   +  +LA N+     P 
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP---QAGAKIAR--ALQELAVNKKAKNAPP 160

Query: 433 LSSRFGTSNPGIDISSNHFE-----GLIPPLPSNSSF--LNLSKNRFS--GSISFLCSI- 482
           L S        I    N  E            S+     + + +N     G    L    
Sbjct: 161 LRS--------IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 483 -SGSKLTYVDLSSNLLSGK--------LPDCWWTFDSLVILNLENNSFSGR----IPDSM 529
               +L  +DL  N  +          L        +L  L L +   S R    + D+ 
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSW----PNLRELGLNDCLLSARGAAAVVDAF 268

Query: 530 GFLQN--IQTLSLHNNRLTGE----LSSSFR-NCSQLRLLDLGKNAL 569
             L+N  +QTL L  N +  +    L +        L  L+L  N  
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 41/274 (14%), Positives = 84/274 (30%), Gaps = 53/274 (19%)

Query: 510 SLVILNLENNSFSGR----IPDSMGFLQNIQTLSLHNNRLTGE----LSSSFRNCSQLRL 561
           S+   +L+ ++ +      +   +    +++ + L  N +  E    LS +  +   L +
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 562 LDLGKN---ALYGEIPTWM---GESL---SNLIVLSLKSNKFHGKIPFQLCQL----AFL 608
            +        +  EIP  +    ++L     L  + L  N F       L         L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 609 QVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLE 668
           + L L  N +    P+         QE + +   K+   L                  + 
Sbjct: 125 EHLYLHNNGLG---PQAGAKIARALQELAVNKKAKNAPPLRS----------------II 165

Query: 669 LSNNNL--NGAVP--EEIMDLVGLVALNLSKNHLTGQ-ISPKIGQL----KSLDFLDLSR 719
              N L         +       L  + + +N +  + I   + +     + L  LDL  
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225

Query: 720 NQL----VGGIPSSLSQLSGLSVMDLSYNNLSGK 749
           N         +  +L     L  + L+   LS +
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 58/400 (14%), Positives = 115/400 (28%), Gaps = 92/400 (23%)

Query: 212 SSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLS 271
           +  S+E   L  + +T                       +   +         ++ + LS
Sbjct: 2   ARFSIEGKSLKLDAIT-----------------TEDEKSVFAVL----LEDDSVKEIVLS 40

Query: 272 FNEL--EGG--IPKFFGNMCSLITLNLSNNKLSGQLSEI---IQNLSSGCLEN-SLKSLY 323
            N +  E    + +   +   L     S+        EI   ++ L    L+   L ++ 
Sbjct: 41  GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100

Query: 324 L-ENSLT--GVIS-ESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGP 379
           L +N+           F S  + L+ L+L NN     L          I  +L       
Sbjct: 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN----GLGPQAG---AKIARALQEL---- 149

Query: 380 HFPKWLQTQNQIELLDISNTGISDT-IPDWFWNLSN--KFSFLDLASNQIKGKLPNLSSR 436
              K  +    +  +      + +  + +W     +      + +  N I          
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI---------- 199

Query: 437 FGTSNPGIDISSNHFEGLIPPLPSNSS--FLNLSKNRFS--GSISFLCSISGSK-LTYVD 491
                 GI+        L+  L        L+L  N F+  GS +   ++     L  + 
Sbjct: 200 ---RPEGIE------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250

Query: 492 LSSNLLSGK--------LPDCWWTFDSLVILNLENNSFSGR----IPDSMG-FLQNIQTL 538
           L+  LLS +                  L  L L+ N         +   +   + ++  L
Sbjct: 251 LNDCLLSARGAAAVVDAFSKL--ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308

Query: 539 SLHNNRLT------GELSSSFRNCSQLRLLDLGKNALYGE 572
            L+ NR +       E+   F    +  L +L       +
Sbjct: 309 ELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 53/335 (15%), Positives = 103/335 (30%), Gaps = 67/335 (20%)

Query: 460 SNSSF--LNLSKNRFSGS-ISFLCSI--SGSKLTYVDLSSN--------LLSGKLPDCWW 506
           +  S    +L  +  +      + ++      +  + LS N         LS  +     
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-- 59

Query: 507 TFDSLVILNLENNSFSGR----IPDSMGFL-------QNIQTLSLHNNRLTGE----LSS 551
               L I    +  F+GR    IP+++  L         + T+ L +N         L  
Sbjct: 60  --KDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116

Query: 552 SFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVL 611
                + L  L L  N L  +    +  +L  L V     N               L+ +
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP------------LRSI 164

Query: 612 DLSLNNISGK----IPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL 667
               N +         K F +   +   +     I+ + +         Y   L   K L
Sbjct: 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL---KVL 221

Query: 668 ELSNNNL--NGAVP--EEIMDLVGLVALNLSKNHLTGQ------ISPKIGQLKSLDFLDL 717
           +L +N     G+      +     L  L L+   L+ +       +    +   L  L L
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281

Query: 718 SRNQL----VGGIPSSLSQ-LSGLSVMDLSYNNLS 747
             N++    V  + + + + +  L  ++L+ N  S
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 41/247 (16%), Positives = 92/247 (37%), Gaps = 33/247 (13%)

Query: 110 SLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLD 169
           + ++    +L        +      L+ +  +   ++ +    ++  + +L  +  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 76

Query: 170 ESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSS 229
            + L +     + +  L +L  L L    +       L+ L     L++L L  N ++  
Sbjct: 77  GNKLTD----IKPLANLKNLGWLFLDENKVK-----DLSSLKDLKKLKSLSLEHNGISD- 126

Query: 230 IYPWLPNISSI--FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMC 287
               +  +  +    S+ LG N++  +       +  L+ L L  N++   +P     + 
Sbjct: 127 ----INGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLT 178

Query: 288 SLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELH 347
            L  L LS N +S      ++ L+   L+N L  L L +        +  SN+     + 
Sbjct: 179 KLQNLYLSKNHISD-----LRALAG--LKN-LDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 348 LANNPLV 354
             +  LV
Sbjct: 231 NTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 46/272 (16%), Positives = 97/272 (35%), Gaps = 56/272 (20%)

Query: 81  PALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQH 140
               +L+ +  +  + +D                    + G          +  L  +  
Sbjct: 40  VTQNELNSIDQIIANNSDIK-----------------SVQG----------IQYLPNVTK 72

Query: 141 LDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLP 200
           L L  N L        L++L  L +L LDE+ + +       +  L  LK+LSL    + 
Sbjct: 73  LFLNGNKLTDIKP---LANLKNLGWLFLDENKVKD----LSSLKDLKKLKSLSLEHNGI- 124

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTS-SIYPWLPNISSIFISIDLGFNQLQGSIPESF 259
                 +N L     LE+L L +N +T  ++   L  +     ++ L  NQ+   I    
Sbjct: 125 ----SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLD----TLSLEDNQIS-DI-VPL 174

Query: 260 QHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSL 319
             +  L++L LS N +     +    + +L  L L + +          N       N +
Sbjct: 175 AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQE--------CLNKPINHQSNLV 224

Query: 320 KSLYLENSLTGVISESFFSNISNLKELHLANN 351
               ++N+   +++    S+  + ++ ++  +
Sbjct: 225 VPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 30/229 (13%)

Query: 83  LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG---TVFAGPIPPQLGNLSRLQ 139
           +  L ++  L L+ N  +     + + +L  L +L L        +      L +L +L+
Sbjct: 64  IQYLPNVTKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKDLSS-----LKDLKKLK 115

Query: 140 HLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYL 199
            L L  N +    +++ L HL  L  L L  + + +      V+ +L  L TLSL    +
Sbjct: 116 SLSLEHNGI---SDINGLVHLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQI 168

Query: 200 PPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYP--WLPNISSIFISIDLGFNQLQGSIPE 257
                  +  L   T L+ L LS N+++  +     L N+      ++L   +       
Sbjct: 169 -----SDIVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLD----VLELFSQECLNKPIN 218

Query: 258 SFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEI 306
              ++V    ++ +   L                +     + + ++S I
Sbjct: 219 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 267

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 52/263 (19%), Positives = 97/263 (36%), Gaps = 51/263 (19%)

Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
           ++    +L    ++  +       +S+  +   N+     +   + +L N+  L L+ N+
Sbjct: 24  AETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNK 79

Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMG-ESLSNLIVLSLKSNKFHGKIPFQLC 603
           LT        N   L  L L +N    ++      + L  L  LSL+ N     I   L 
Sbjct: 80  LTDI--KPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DING-LV 131

Query: 604 QLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL 663
            L  L+ L L  N I+          + +T+                             
Sbjct: 132 HLPQLESLYLGNNKIT-----DITVLSRLTK----------------------------- 157

Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723
           + +L L +N ++  VP  +  L  L  L LSKNH++  +   +  LK+LD L+L   + +
Sbjct: 158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECL 213

Query: 724 GGIPSSLSQLSGLSVMDLSYNNL 746
               +  S L   + +  +  +L
Sbjct: 214 NKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 31/169 (18%), Positives = 66/169 (39%), Gaps = 20/169 (11%)

Query: 579 ESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS 638
           ++ +  I  +LK       +     +L  +  +  + ++I   + +       +T+   +
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLN 76

Query: 639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHL 698
              + D   L          + L  +  L L  N +       + DL  L +L+L  N +
Sbjct: 77  GNKLTDIKPL----------ANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGI 124

Query: 699 TGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
           +  I+  +  L  L+ L L  N++     + LS+L+ L  + L  N +S
Sbjct: 125 S-DING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 51/293 (17%), Positives = 98/293 (33%), Gaps = 65/293 (22%)

Query: 390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-----GKLPNLSSRFGTSNPGI 444
           +    ++    ++D +      L++    +   ++ IK       LPN++         +
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNS-IDQIIANNSDIKSVQGIQYLPNVTK--------L 73

Query: 445 DISSNHFEGLIPPLPSNSS--FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLP 502
            ++ N     I PL +  +  +L L +N+    +S L  +   KL  + L  N +S    
Sbjct: 74  FLNGNKLTD-IKPLANLKNLGWLFLDENKVK-DLSSLKDLK--KLKSLSLEHNGIS---- 125

Query: 503 DCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562
                     I  L +             L  +++L L NN++T    +     ++L  L
Sbjct: 126 ---------DINGLVH-------------LPQLESLYLGNNKITD--ITVLSRLTKLDTL 161

Query: 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI 622
            L  N +  +I       L+ L  L L  N         L  L  L VL+L       K 
Sbjct: 162 SLEDNQIS-DIVPL--AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 216

Query: 623 PKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN 675
               +N       +++D ++             E  S  G  +   +  +   
Sbjct: 217 INHQSNLVVPNTVKNTDGSL----------VTPEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 48/291 (16%), Positives = 89/291 (30%), Gaps = 79/291 (27%)

Query: 335 SFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELL 394
                 +   + +L    +                ++ +                 I+ +
Sbjct: 18  FSDDAFAETIKDNLKKKSVTD-------------AVTQNELN-------------SIDQI 51

Query: 395 DISNTGISDTIP-DWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEG 453
             +N+ I       +  N++     L L  N++   +  L++                  
Sbjct: 52  IANNSDIKSVQGIQYLPNVTK----LFLNGNKLT-DIKPLAN------------------ 88

Query: 454 LIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLS-----GKLPDCWWTF 508
                  N  +L L +N+    +S L  +   KL  + L  N +S       LP      
Sbjct: 89  -----LKNLGWLFLDENKVK-DLSSLKDL--KKLKSLSLEHNGISDINGLVHLP------ 134

Query: 509 DSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNA 568
             L  L L NN  +      +  L  + TLSL +N+++          ++L+ L L KN 
Sbjct: 135 -QLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKN- 188

Query: 569 LYGEIPTWMG-ESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNI 618
               I        L NL VL L S +   K       L     +  +  ++
Sbjct: 189 ---HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 50/313 (15%), Positives = 91/313 (29%), Gaps = 94/313 (30%)

Query: 257 ESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLE 316
            S           L    +   +      + S+  +  +N+ +       +Q +    L 
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-----SVQGIQY--LP 68

Query: 317 NSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCK 376
           N +  L+L      +      +N+ NL  L L  N +               + SL   K
Sbjct: 69  N-VTKLFLNG--NKLTDIKPLANLKNLGWLFLDENKVK-------------DLSSLKDLK 112

Query: 377 IGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSR 436
                        +++ L + + GISD       +L      L L +N+I          
Sbjct: 113 -------------KLKSLSLEHNGISDING--LVHLPQ-LESLYLGNNKIT--------- 147

Query: 437 FGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNL 496
                   DI+      L     +    L+L  N+ S  I  L  ++  KL  + LS N 
Sbjct: 148 --------DITV--LSRL-----TKLDTLSLEDNQIS-DIVPLAGLT--KLQNLYLSKNH 189

Query: 497 LSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNC 556
           +S              +  L               L+N+  L L +     +  +   N 
Sbjct: 190 IS-------------DLRALAG-------------LKNLDVLELFSQECLNKPINHQSNL 223

Query: 557 SQLRLLDLGKNAL 569
                +     +L
Sbjct: 224 VVPNTVKNTDGSL 236

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 30/161 (18%)

Query: 200 PPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFIS------IDLGFNQLQG 253
           P  +P          ++  + L  N +       +P     F        IDL  NQ+  
Sbjct: 27  PTNLP---------ETITEIRLEQNTIKV-----IP--PGAFSPYKKLRRIDLSNNQIS- 69

Query: 254 SIPE-SFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSS 312
            +   +FQ +  L  L L  N++       F  + SL  L L+ NK++    +  Q+L +
Sbjct: 70  ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129

Query: 313 GCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
                 L  L L ++    I++  FS +  ++ +HLA NP 
Sbjct: 130 ------LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 13/147 (8%)

Query: 455 IPP-LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLV- 512
           IP  LP   + + L +N     I         KL  +DLS+N +S +L      F  L  
Sbjct: 26  IPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRS 81

Query: 513 --ILNLENNSFSGRIPDSMGF--LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNA 568
              L L  N  +  +P S+ F  L ++Q L L+ N++      +F++   L LL L  N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSL-FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139

Query: 569 LYGEIPTWMGESLSNLIVLSLKSNKFH 595
           L   I       L  +  + L  N F 
Sbjct: 140 L-QTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 18/120 (15%)

Query: 185 KLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIF--- 241
               L+ + L +  +  + P +   L    SL +LVL  N +T      LP   S+F   
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQGL---RSLNSLVLYGNKITE-----LP--KSLFEGL 103

Query: 242 ---ISIDLGFNQLQGSIPE-SFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNN 297
                + L  N++   +   +FQ +  L  L L  N+L+      F  + ++ T++L+ N
Sbjct: 104 FSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEI 573
           + LE N+     P +    + ++ + L NN+++     +F+    L  L L  N +  E+
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TEL 95

Query: 574 PTWMGESLSNLIVLSLKSNKFHGKIP---FQLCQLAFLQVLDLSLNNISGKIPKCFNNFT 630
           P  + E L +L +L L +NK +  +    FQ   L  L +L L  N +       F+   
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQ--DLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 631 AMTQ 634
           A+  
Sbjct: 153 AIQT 156

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 534 NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNK 593
            I  + L  N +      +F    +LR +DL  N +  E+     + L +L  L L  NK
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNK 91

Query: 594 FHGKIPFQLCQLAFLQVLDLSLNNISGKIPK 624
                      L  LQ+L L+ N I+  +  
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKIN-CLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQL 722
           +  + L  N +    P        L  ++LS N ++ +++P     L+SL+ L L  N++
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 723 VGGIPSSLSQLSGLSVMDLSYNNLS 747
                S    L  L ++ L+ N ++
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKIN 117

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 34/199 (17%)

Query: 163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLS 222
              L+L E+ L   S     +     L  L+L    L       L    +   L TL LS
Sbjct: 33  TTILHLSENLLYTFSL--ATLMPYTRLTQLNLDRAELT-----KLQVDGTLPVLGTLDLS 85

Query: 223 DNNLTSSIYPWLPNISSIFISI------DLGFNQLQGSIPES-FQHMVYLEHLRLSFNEL 275
            N L S        +  +  ++      D+ FN+L  S+P    + +  L+ L L  NEL
Sbjct: 86  HNQLQS--------LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 276 EGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYLENSLTGVIS 333
           +   P        L  L+L+NN L          L +G L    +L +L L+ +    I 
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNL--------TELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 334 ESFFSNISNLKELHLANNP 352
           + FF +   L    L  NP
Sbjct: 189 KGFFGS-HLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 47/237 (19%), Positives = 81/237 (34%), Gaps = 44/237 (18%)

Query: 510 SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNAL 569
           S + +N +  + +  +P      ++   L L  N L     ++    ++L  L+L +  L
Sbjct: 11  SHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 570 YGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNF 629
             ++       L  L  L L  N+    +P     L  L VLD+S N ++          
Sbjct: 68  -TKLQVDGT--LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD-LVGL 688
             + +                                L L  N L   +P  ++     L
Sbjct: 124 GELQE--------------------------------LYLKGNELK-TLPPGLLTPTPKL 150

Query: 689 VALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN 744
             L+L+ N+LT ++   +   L++LD L L  N L   IP        L    L  N
Sbjct: 151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 28/172 (16%)

Query: 188 SLKTLSLHSCYL---PPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISI 244
           S   ++     L   PP +P              L LS+N L +          +    +
Sbjct: 11  SHLEVNCDKRNLTALPPDLP---------KDTTILHLSENLLYT-FSLATLMPYTRLTQL 60

Query: 245 DLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLS 304
           +L   +L   +      +  L  L LS N+L+  +P     + +L  L++S N+      
Sbjct: 61  NLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR------ 111

Query: 305 EIIQNLSSGCLEN--SLKSLYLE-NSLTGVISESFFSNISNLKELHLANNPL 353
             + +L  G L     L+ LYL+ N L   +     +    L++L LANN L
Sbjct: 112 --LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 43/191 (22%), Positives = 61/191 (31%), Gaps = 25/191 (13%)

Query: 114 LRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNL 173
              L L   +        L   +RL  L+L    L     L     L  L  L+L  + L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHNQL 89

Query: 174 ANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPW 233
            +     Q    L +L  L +    L  +   +L  L     L+ L L  N L +     
Sbjct: 90  QSLPLLGQ---TLPALTVLDVSFNRLTSLPLGALRGL---GELQELYLKGNELKT----- 138

Query: 234 LPNISSIFIS------IDLGFNQLQGSIPES-FQHMVYLEHLRLSFNELEGGIPKFFGNM 286
           LP    +         + L  N L   +P      +  L+ L L  N L      FFG+ 
Sbjct: 139 LP--PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH 195

Query: 287 CSLITLNLSNN 297
             L    L  N
Sbjct: 196 -LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 52/248 (20%), Positives = 76/248 (30%), Gaps = 51/248 (20%)

Query: 477 SFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQ 536
                 S      V+     L+  LP          IL+L  N        ++     + 
Sbjct: 5   EVSKVASH---LEVNCDKRNLT-ALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 537 TLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHG 596
            L+L    LT            L  LDL  N L   +P  +G++L  L VL +  N+   
Sbjct: 59  QLNLDRAELTK--LQVDGTLPVLGTLDLSHNQL-QSLPL-LGQTLPALTVLDVSFNRLT- 113

Query: 597 KIP---FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGS 653
            +P    +   L  LQ L L  N +    P        + +                   
Sbjct: 114 SLPLGALR--GLGELQELYLKGNELKTLPPGLLTPTPKLEK------------------- 152

Query: 654 EREYRSTLGLVKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQISPKIGQLKSL 712
                        L L+NNNL   +P  +++ L  L  L L +N L   I         L
Sbjct: 153 -------------LSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLL 197

Query: 713 DFLDLSRN 720
            F  L  N
Sbjct: 198 PFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 46/270 (17%), Positives = 81/270 (30%), Gaps = 79/270 (29%)

Query: 283 FGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISN 342
              + S + +N         L+ +  +L           L+L  +L    S +     + 
Sbjct: 6   VSKVASHLEVNCDKR----NLTALPPDLPK-----DTTILHLSENLLYTFSLATLMPYTR 56

Query: 343 LKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGIS 402
           L +L+L    L        +     +                      +  LD+S+  + 
Sbjct: 57  LTQLNLDRAELTK------LQVDGTLP--------------------VLGTLDLSHNQLQ 90

Query: 403 DTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNS 462
            ++P     L    + LD++ N++   LP           G         GL        
Sbjct: 91  -SLPLLGQTLPA-LTVLDVSFNRLT-SLP----------LGA------LRGL-----GEL 126

Query: 463 SFLNLSKNRFSGSISFLCSISG------SKLTYVDLSSNLLSGKLPDCWWTFDSLV---I 513
             L L  N        L ++         KL  + L++N L+ +LP      + L     
Sbjct: 127 QELYLKGNE-------LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG--LLNGLENLDT 176

Query: 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNN 543
           L L+ NS    IP        +    LH N
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 13/141 (9%)

Query: 608 LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL 667
             +L LS N +          +T +TQ       +          ++ +   TL ++ +L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL----------TKLQVDGTLPVLGTL 82

Query: 668 ELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGI 726
           +LS+N L  ++P     L  L  L++S N LT  +       L  L  L L  N+L    
Sbjct: 83  DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLP 140

Query: 727 PSSLSQLSGLSVMDLSYNNLS 747
           P  L+    L  + L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 52/285 (18%), Positives = 87/285 (30%), Gaps = 65/285 (22%)

Query: 136 SRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLH 195
           S    LDL  N L         + L+ L  L L  ++L                      
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--------------------- 77

Query: 196 SCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSI 255
             ++      +   +    +L  L LS N+L +     L                     
Sbjct: 78  --FIS---SEAFVPV---PNLRYLDLSSNHLHT-----LD-------------------- 104

Query: 256 PESFQHMVYLEHLRLSFNELEGGIPKF-FGNMCSLITLNLSNNKLSGQLSEIIQNLSSGC 314
              F  +  LE L L  N +   + +  F +M  L  L LS N++S    E+I++ +   
Sbjct: 105 EFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK-- 161

Query: 315 LENSLKSLYLENSLTGVISESFFSNISNLKE--LHLANNPLV----LKLSHDWVPPFQLI 368
           L   L  L L ++    +  +    +    +  L+L NNPL     L          QL 
Sbjct: 162 LP-KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLS 220

Query: 369 IISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLS 413
            +      +     K L     ++  + S    S         L+
Sbjct: 221 SVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLT 265

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 7e-11
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 17/173 (9%)

Query: 455 IPP-LPSNSSFLNLSKNRFSGSISFLCSISG-SKLTYVDLSSNLLSGKLPDCWWTFD--- 509
           +P  LPS ++ L+LS N  S  +    + +  + L  + LS N L+  +      F    
Sbjct: 33  VPQSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISS--EAFVPVP 88

Query: 510 SLVILNLENNSFSGRIPDSMGF--LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
           +L  L+L +N     + + + F  LQ ++ L L+NN +     ++F + +QL+ L L +N
Sbjct: 89  NLRYLDLSSNHLH-TLDEFL-FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 568 ALYGEIPTWM---GESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNN 617
            +    P  +   G  L  L++L L SNK        L +L       L L+N
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 14/165 (8%)

Query: 88  DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQ-LGNLSRLQHLDLGSN 146
               L+LS N+ S          L+ L  L L        I  +    +  L++LDL SN
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSN 98

Query: 147 YLFSTGNLDW--LSHLSYLRYLNLDESNLAN-SSDWFQVIGKLHSLKTLSLHSCYLPPVI 203
           +L +   LD    S L  L  L L  +++     + F+    +  L+ L L    +    
Sbjct: 99  HLHT---LDEFLFSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQISRFP 152

Query: 204 PLSLNHLNSSTSLETLVLSDNNLTS---SIYPWLPNISSIFISID 245
              +   N    L  L LS N L     +    LP      + + 
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 510 SLVILNLENNSFSGRIPDSMGF--LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
              +L+L +N+ S R+        L N+ +L L +N L    S +F     LR LDL  N
Sbjct: 40  YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
            L   +  ++   L  L VL L +N            +A LQ L LS N IS    +   
Sbjct: 99  HL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 628 NFTAMTQ 634
           +   + +
Sbjct: 158 DGNKLPK 164

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 46/197 (23%), Positives = 71/197 (36%), Gaps = 45/197 (22%)

Query: 557 SQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP---FQLCQLAFLQVLDL 613
           S   LLDL  N L      W    L+NL  L L  N  +  I    F    +  L+ LDL
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFV--PVPNLRYLDL 95

Query: 614 SLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNN 673
           S N++   + +    F+ +               L                  L L NN+
Sbjct: 96  SSNHLH-TLDE--FLFSDLQA-------------LEV----------------LLLYNNH 123

Query: 674 LNGAVPEEIMD-LVGLVALNLSKNHLTGQISPKI----GQLKSLDFLDLSRNQLVGGIPS 728
           +   V     + +  L  L LS+N ++ +   ++     +L  L  LDLS N+L     +
Sbjct: 124 IV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 729 SLSQLSGLSVMDLSYNN 745
            L +L       L  +N
Sbjct: 182 DLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 664 VKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQ 721
              L+LS+NNL+    E     L  L +L LS NHL   IS +    + +L +LDLS N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 722 LVGGIPSSLSQLSGLSVMDLSYNNLS 747
           L        S L  L V+ L  N++ 
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 78  TISP-ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPP-QLGNL 135
            IS  A + + +LR+L+LS N         F   L  L  L L+       +      ++
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLYNNHIVV-VDRNAFEDM 135

Query: 136 SRLQHLDLGSNYL--FSTGNLDWLSHLSYLRYLNLDESNLAN-SSDWFQVIGKLHSLKTL 192
           ++LQ L L  N +  F    +   + L  L  L+L  + L        Q +        L
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW-VKNGL 194

Query: 193 SLHS 196
            LH+
Sbjct: 195 YLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 16/148 (10%)

Query: 606 AFLQVLDLSLNNISGKIPKC-FNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLV 664
           ++  +LDLS NN+S    +      T +     S   +       +          +  +
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP--------VPNL 90

Query: 665 KSLELSNNNLNGAVPEEI-MDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQL 722
           + L+LS+N+L+  + E +  DL  L  L L  NH+   +       +  L  L LS+NQ+
Sbjct: 91  RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI 148

Query: 723 V---GGIPSSLSQLSGLSVMDLSYNNLS 747
                 +    ++L  L ++DLS N L 
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLK 176

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 2e-11
 Identities = 87/605 (14%), Positives = 176/605 (29%), Gaps = 136/605 (22%)

Query: 61  ILLDLQP---IDFDSFP----LRGTISPA----LLKLHD----LRHLNLSFNDFSGSPIP 105
           IL   +     +FD        +  +S      ++   D       L  +        + 
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 106 EFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLD--LGSNYLFSTGNLDWLSHLSYL 163
           +F+  + ++ Y  L   +      P +     ++  D     N +F+  N+  L     L
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 164 RYLNLDESNLANSSDWFQV-----IGK----LHSLKTLSLHSCYLPPVIPLSLNHLNSST 214
           R   L E      +    +      GK    L    +  +       +  L+L + NS  
Sbjct: 141 R-QALLE---LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 215 S-LETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVY------LEH 267
           + LE L      L   I P   + S    +I L  + +Q  +    +   Y      L +
Sbjct: 197 TVLEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 268 LRLSFNELEGGIPKFFGNMCS--LITLNLSN-NKLSGQLSEIIQNLSSGCLENSLKSLYL 324
           ++             F   C   L T      + LS   +  I       L++   +L  
Sbjct: 253 VQ------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDHHSMTLTP 300

Query: 325 ENSLTGVISESFFSNISNLKELHLANNPLVLKL----SHDWVPPFQ----------LIII 370
           +     ++ +       +L    L  NP  L +      D +  +             II
Sbjct: 301 DEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 371 SLSSCKIGPH-----------FPK--WLQTQNQIELLDISNTGISDTIPDWFWNLSNKFS 417
             S   + P            FP    + T     LL +    +  +      N  +K+S
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI----LLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 418 FLDLASNQIKGKLPNLSSRFGTSNPG--------ID----ISSNHFEGLIPPLPSN--SS 463
            ++    +    +P++                  +D      +   + LIPP       S
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 464 FL--NLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKL---PDCWWTFDSL--VILNL 516
            +  +L        ++    +      ++D     L  K+      W    S+   +  L
Sbjct: 476 HIGHHLKNIEHPERMTLFRMV------FLDF--RFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 517 EN---------NSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
           +            +   +   + FL  I+   +          S + +  ++ L+     
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLIC---------SKYTDLLRIALMA-EDE 577

Query: 568 ALYGE 572
           A++ E
Sbjct: 578 AIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 8e-06
 Identities = 72/494 (14%), Positives = 131/494 (26%), Gaps = 186/494 (37%)

Query: 2   RVADSNIIR--CIDEEREALLTF---------------KASLVDESGVLSSWGPEDEKRD 44
             A  N+ R     + R+ALL                 K  +  +  V  S+  + +   
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD--VCLSYKVQCKMDF 182

Query: 45  CCKWTGLRCSNKTNHVI--LLDL---------QPIDFDSFP----------LRGTISP-- 81
              W  L+  N    V+  L  L            D  S            LR  +    
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 82  ---ALLKLHDLRHLNL--SFN---------------DFSGS------PIPEFIGSLSKLR 115
               LL L ++++     +FN               DF  +       +     +L+   
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 116 YLDLFGTVFAGPI---PPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESN 172
              L            P ++   +    L +      +    D L+     +++N D+  
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPR-RLSI-----IAESIRDGLATWDNWKHVNCDKLT 356

Query: 173 LANSSD---------------------------------WFQ--------VIGKLH--SL 189
               S                                  WF         V+ KLH  SL
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 190 -------KTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI 242
                   T+S+ S YL          L +  +L   ++   N+  +             
Sbjct: 417 VEKQPKESTISIPSIYL-----ELKVKLENEYALHRSIVDHYNIPKTFDSD--------- 462

Query: 243 SIDLGFNQLQGSIPESFQHMVYLEHLR-LSFNELEGGIPKFFGNMCSLITLNLS--NNKL 299
             DL    L       + H+ +  HL+ +   E        F        L+      K+
Sbjct: 463 --DLIPPYLDQYF---YSHIGH--HLKNIEHPERMTLFRMVF--------LDFRFLEQKI 507

Query: 300 ---------SGQLSEIIQNL---------SSGCLENSLKSL--YLENSLTGVISESFFSN 339
                    SG +   +Q L         +    E  + ++  +L      +I  S +++
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI-CSKYTD 566

Query: 340 ISNLKELHLA-NNP 352
           +     L +A    
Sbjct: 567 L-----LRIALMAE 575

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 41/225 (18%)

Query: 530 GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSL 589
               + QTL L    L    S +F N   +  + +  +    ++ +    +LS +  + +
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 590 KSNKFHGKIP---FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKL 646
           ++ +    I     +  +L  L+ L +    +       F + T +              
Sbjct: 88  RNTRNLTYIDPDALK--ELPLLKFLGIFNTGLK-----MFPDLTKV-------------- 126

Query: 647 MLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVG--LVALNLSKNHLTGQISP 704
                        +  +   LE+++N    ++P      +    + L L  N  T  +  
Sbjct: 127 ------------YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173

Query: 705 KIGQLKSLDFLDLSRNQLVGGIPS-SLSQL-SGLSVMDLSYNNLS 747
                  LD + L++N+ +  I   +   + SG S++D+S  +++
Sbjct: 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 96/314 (30%)

Query: 214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFN 273
              E   ++  ++       +P++     ++ L    L+     +F ++  +  + +S +
Sbjct: 11  HQEEDFRVTCKDIQR-----IPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 274 ELEGGIPKF-FGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVI 332
                +    F N+  +  + + N           +NL+                    I
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNT----------RNLTY-------------------I 96

Query: 333 SESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIE 392
                  +  LK L + N  L                      K+ P   K   T     
Sbjct: 97  DPDALKELPLLKFLGIFNTGL----------------------KMFPDLTKVYSTDIFFI 134

Query: 393 LLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFE 452
           L    N  ++    + F  L N+   L L +N                     +    F 
Sbjct: 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-----------------SVQGYAFN 177

Query: 453 GLIPPLPSNSSFLNLSKNRFSGSISFLCSIS-------GSKLTYVDLSSNLLSGKLPDCW 505
           G           + L+KN+      +L  I         S  + +D+S   ++  LP   
Sbjct: 178 GT------KLDAVYLNKNK------YLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS-- 222

Query: 506 WTFDSLVILNLENN 519
              + L  L   N 
Sbjct: 223 KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 44/243 (18%), Positives = 82/243 (33%), Gaps = 43/243 (17%)

Query: 88  DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQL-GNLSRLQHLDLGSN 146
             + L L        P   F   L  +  + +   V    +      NLS++ H+++ + 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 147 YLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLS 206
              +  + D L  L  L++L +  + L                            + P  
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK---------------------------MFP-D 122

Query: 207 LNHLNSSTSLETLVLSDNNLTSSIYPW-LPNISSIFISIDLGFNQLQGSIPESFQHMVYL 265
           L  + S+     L ++DN   +SI       + +  +++ L  N    S+     +   L
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181

Query: 266 EHLRLSFNELEGGIPK--FFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLY 323
           + + L+ N+    I K  F G       L++S           +  L S  LE+ LK L 
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS--------VTALPSKGLEH-LKELI 232

Query: 324 LEN 326
             N
Sbjct: 233 ARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 25/220 (11%)

Query: 389 NQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK-------GKLPNLSSRFGTSN 441
           +Q E   ++   I   IP    +L      L L    ++         LPN+S  + + +
Sbjct: 11  HQEEDFRVTCKDIQ-RIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 442 PGI-DISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGK 500
             +  + S+ F  L     S  + + +   R    I          L ++ + +  L   
Sbjct: 66  VTLQQLESHSFYNL-----SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-M 119

Query: 501 LPDCWWTF--DSLVILNLENNSFSGRIPDSM--GFLQNIQTLSLHNNRLTGELSSSFRNC 556
            PD    +  D   IL + +N +   IP +   G      TL L+NN  T  +     N 
Sbjct: 120 FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178

Query: 557 SQLRLLDLGKNALYGEIPTWMGESL-SNLIVLSLKSNKFH 595
           ++L  + L KN     I       + S   +L +      
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.0 bits (158), Expect = 6e-11
 Identities = 67/502 (13%), Positives = 153/502 (30%), Gaps = 61/502 (12%)

Query: 85  KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVF--AGPIPPQLGNLSRLQHLD 142
           +      +  ++  +    + E   +L +L+ +     +                L+ L 
Sbjct: 85  RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144

Query: 143 LGSNYLFSTGNLDWL-SHLSYLRYLNLDESNLANSSD-WFQVIGK-LHSLKTLSLHSCYL 199
           L     F+T  L  + +H   ++ L ++ES+ +     W   + +   SL+ L+ +    
Sbjct: 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF 204

Query: 200 PPVIPLSLNHL-NSSTSLETLVLSDNNLTS--SIYPWLPNISSIFISIDLGFNQLQGSIP 256
             + P  L  +  +  SL ++ + D  +      +    N+           N+  G   
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG---GSLNEDIGMPE 261

Query: 257 ESFQHMVYLEHLRLSFNEL-EGGIPKFFGNMCSLITLNLSN-NKLSGQLSEIIQNLSSGC 314
           +    +   +  RL  + +    +P  F     +  L+L      +     +IQ      
Sbjct: 262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP--- 318

Query: 315 LENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS- 373
              +L+ L   N +     E        LK L +        +  +     Q  +I+L+ 
Sbjct: 319 ---NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375

Query: 374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNL 433
            C+             ++E + +  + I++             S   + +         L
Sbjct: 376 GCQ-------------ELEYMAVYVSDITNE------------SLESIGTYLKNLCDFRL 410

Query: 434 SSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRF--SGSISFLCSISGSKLTYVD 491
                          N    L+        F    +        +S++       + ++ 
Sbjct: 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ-YSPNVRWML 469

Query: 492 LSSNLLSGK-----LPDCWWTFDSLVILNLENNSFSGR-IPDSMGFLQNIQTLSLHNNRL 545
           L     S +        C     +L  L +    FS R I  ++  L +++ L +   R 
Sbjct: 470 LGYVGESDEGLMEFSRGC----PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

Query: 546 T---GELSSSFRNCSQLRLLDL 564
           +    +L    R    + L+  
Sbjct: 526 SMTGQDLMQMARPYWNIELIPS 547

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 41/291 (14%), Positives = 82/291 (28%), Gaps = 51/291 (17%)

Query: 86  LHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGS 145
              +R L+L +           I     L  L+    +    +        +L+ L +  
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351

Query: 146 NYLFSTGNLDWL-----------SHLSYLRYLNLDESNLANSSDWFQVIGK----LHSLK 190
                    +                  L Y+ +  S++ N S   + IG     L   +
Sbjct: 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES--LESIGTYLKNLCDFR 409

Query: 191 TLSLHSCYLPPVIPLS---LNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLG 247
            + L        +PL     + L     L                         ++ DLG
Sbjct: 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR--------------QGGLT-DLG 454

Query: 248 FNQLQGSIPESFQHMVYLEHLRLSFNEL-EGGIPKFFGNMCSLITLNLSNNKLSGQLSEI 306
            + +        Q+   +  + L +    + G+ +F     +L  L +     S      
Sbjct: 455 LSYIG-------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS---ERA 504

Query: 307 IQNLSSGCLENSLKSLYLEN---SLTGVISESFFSNISNLKELHLANNPLV 354
           I    +     SL+ L+++    S+TG           N++ +     P V
Sbjct: 505 IAAAVTKL--PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 48/387 (12%), Positives = 108/387 (27%), Gaps = 51/387 (13%)

Query: 52  RCSNKTNHVILL---DLQPIDFDSFPLRGTISPALLKLHDLRHLN-LSFNDFSGSPIPEF 107
                          +L+     S      +    + L   R L  L  +    + +P  
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288

Query: 108 IGSLSKLRYLDL-FGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYL 166
               +++R LDL +  +        +     L+ L+   N +   G      +   L+ L
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET-RNVIGDRGLEVLAQYCKQLKRL 347

Query: 167 NLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNL 226
            ++        +  + +     L  L+   C                  LE + +  +++
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALA-QGC----------------QELEYMAVYVSDI 390

Query: 227 T----SSIYPWLPNISSIFISI-----DLGFNQLQGSIPESFQHMVYLEHLRLSFN--EL 275
           T     SI  +L N+    + +      +    L   +         L           L
Sbjct: 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450

Query: 276 EGGIPKFFGNMC-SLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLEN-SLTGVIS 333
                 + G    ++  + L     S    E +   S GC   +L+ L +     +    
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVGES---DEGLMEFSRGC--PNLQKLEMRGCCFSERAI 505

Query: 334 ESFFSNISNLKELHLANNPL------VLKLSHDWVPPFQLIIISLSSC-KIGPHFPKWLQ 386
            +  + + +L+ L +           +++++    P + + +I      ++         
Sbjct: 506 AAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR---PYWNIELIPSRRVPEVNQQGEIREM 562

Query: 387 TQNQIELLDISNTGISDTIPDWFWNLS 413
                 L   S  G     P     L 
Sbjct: 563 EHPAHILAYYSLAGQRTDCPTTVRVLK 589

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 28/198 (14%)

Query: 163 LRYLNLDESNLAN-SSDWFQVIGKLHSLKTLSLHSCYL---PPVIPLSLNHLNSSTSLET 218
            + L+L  + L++  S  F    +L  L+ L L+   L   P  I   L       +LET
Sbjct: 39  TKKLDLQSNKLSSLPSKAFH---RLTKLRLLYLNDNKLQTLPAGIFKEL------KNLET 89

Query: 219 LVLSDNNLTS---SIYPWLPNISSIFISIDLGFNQLQGSIPES-FQHMVYLEHLRLSFNE 274
           L ++DN L +    ++  L N++ +     L  NQL+ S+P   F  +  L +L L +NE
Sbjct: 90  LWVTDNKLQALPIGVFDQLVNLAEL----RLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144

Query: 275 LEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISE 334
           L+      F  + SL  L L NN+L          L+       LK+L L+N+    + E
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE------LKTLKLDNNQLKRVPE 198

Query: 335 SFFSNISNLKELHLANNP 352
             F ++  LK L L  NP
Sbjct: 199 GAFDSLEKLKMLQLQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 25/149 (16%)

Query: 214 TSLETLVLSDNNLTSSIYPWLPNISSIFIS------IDLGFNQLQGSIPES-FQHMVYLE 266
           T L  L L+DN L +     LP  + IF        + +  N+LQ ++P   F  +V L 
Sbjct: 61  TKLRLLYLNDNKLQT-----LP--AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLA 112

Query: 267 HLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYL 324
            LRL  N+L+   P+ F ++  L  L+L  N+L        Q+L  G  +   SLK L L
Sbjct: 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL--------QSLPKGVFDKLTSLKELRL 164

Query: 325 ENSLTGVISESFFSNISNLKELHLANNPL 353
            N+    + E  F  ++ LK L L NN L
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 55/215 (25%), Positives = 81/215 (37%), Gaps = 41/215 (19%)

Query: 534 NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNK 593
           + + L L +N+L+   S +F   ++LRLL L  N L   +P  + + L NL  L +  NK
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNK 96

Query: 594 FHGKIP---FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTW 650
               +P   F   QL  L  L L  N +    P+ F++ T +T                 
Sbjct: 97  LQ-ALPIGVFD--QLVNLAELRLDRNQLKSLPPRVFDSLTKLTY---------------- 137

Query: 651 KGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQISPKIGQL 709
                           L L  N L  ++P+ + D L  L  L L  N L         +L
Sbjct: 138 ----------------LSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180

Query: 710 KSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN 744
             L  L L  NQL      +   L  L ++ L  N
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 48/176 (27%), Positives = 68/176 (38%), Gaps = 31/176 (17%)

Query: 134 NLSRLQHLDLGSNYL--FSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKT 191
            L++L+ L L  N L     G       L  L  L + ++ L        V  +L +L  
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFK---ELKNLETLWVTDNKLQALPI--GVFDQLVNLAE 113

Query: 192 LSLHSC---YLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFIS----- 243
           L L       LPP +  SL      T L  L L  N L S     LP    +F       
Sbjct: 114 LRLDRNQLKSLPPRVFDSL------TKLTYLSLGYNELQS-----LPK--GVFDKLTSLK 160

Query: 244 -IDLGFNQLQGSIPES-FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNN 297
            + L  NQL+  +PE  F  +  L+ L+L  N+L+      F ++  L  L L  N
Sbjct: 161 ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 24/186 (12%)

Query: 419 LDLASNQIKG-------KLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNR 471
           LDL SN++         +L  L   +   N    + +  F+ L      N   L ++ N+
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL-----KNLETLWVTDNK 96

Query: 472 FSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLV---ILNLENNSFSGRIPDS 528
              ++          L  + L  N L   LP     FDSL     L+L  N     +P  
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPP--RVFDSLTKLTYLSLGYNELQ-SLPKG 151

Query: 529 MGF--LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIV 586
           + F  L +++ L L+NN+L      +F   ++L+ L L  N L   +P    +SL  L +
Sbjct: 152 V-FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKM 209

Query: 587 LSLKSN 592
           L L+ N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 36/145 (24%), Positives = 52/145 (35%), Gaps = 42/145 (28%)

Query: 608 LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL 667
            + LDL  N +S    K F+  T +                                  L
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRL--------------------------------L 66

Query: 668 ELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLV-- 723
            L++N L   +P  I   L  L  L ++ N L   +   +  QL +L  L L RNQL   
Sbjct: 67  YLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL 124

Query: 724 -GGIPSSLSQLSGLSVMDLSYNNLS 747
              +  SL++L+ L    L YN L 
Sbjct: 125 PPRVFDSLTKLTYL---SLGYNELQ 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPE-SFQHMVYLEHLRLSF 272
                L L++N  T      +         I+   N++   I E +F+    +  + L+ 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 273 NELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVI 332
           N LE    K F  + SL TL L +N+++   ++    LS      S++ L L ++    +
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS------SVRLLSLYDNQITTV 144

Query: 333 SESFFSNISNLKELHLANNPL 353
           +   F  + +L  L+L  NP 
Sbjct: 145 APGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 26/142 (18%)

Query: 455 IPP-LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVI 513
           IP  +P  ++ L L+ N F+   +        +L  ++ S+N ++               
Sbjct: 26  IPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--------------- 70

Query: 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEI 573
            ++E  +F G           +  + L +NRL       F+    L+ L L  N +   +
Sbjct: 71  -DIEEGAFEG--------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI-TCV 120

Query: 574 PTWMGESLSNLIVLSLKSNKFH 595
                  LS++ +LSL  N+  
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 35/157 (22%)

Query: 88  DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG--------TVFAGPIPPQLGNLSRLQ 139
               L L+ N+F+          L +LR ++             F G         S + 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG--------ASGVN 84

Query: 140 HLDLGSNYLFSTGNLDW--LSHLSYLRYLNLDESNLAN-SSDWFQVIGKLHSLKTLSLHS 196
            + L SN L +   +       L  L+ L L  + +    +D F     L S++ LSL+ 
Sbjct: 85  EILLTSNRLEN---VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYD 138

Query: 197 CYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPW 233
             +  V P + + L    SL TL L  N       P+
Sbjct: 139 NQITTVAPGAFDTL---HSLSTLNLLAN-------PF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 664 VKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQ 721
              L L+NN         I   L  L  +N S N +T  I          ++ + L+ N+
Sbjct: 34  TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR 92

Query: 722 LVGGIPSSLSQLSGLSVMDLSYNNLS 747
           L          L  L  + L  N ++
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 533 QNIQTLSLHNNRLTG-ELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS 591
           Q    L L+NN  T  E +  F+   QLR ++   N +  +I     E  S +  + L S
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTS 90

Query: 592 NKFHGKIP---FQLCQLAFLQVLDLSLNNIS 619
           N+    +    F+   L  L+ L L  N I+
Sbjct: 91  NRLEN-VQHKMFK--GLESLKTLMLRSNRIT 118

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 54/226 (23%)

Query: 132 LGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKT 191
              L+     +LG   +    +      LS ++  N D SN+ +       +    +LK 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQ---KELSGVQNFNGDNSNIQS----LAGMQFFTNLKE 67

Query: 192 LSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI-SIDLGFNQ 250
           L L    +       L+ L   T LE L ++ N L +     L  I S  +  + L  N+
Sbjct: 68  LHLSHNQIS-----DLSPLKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNE 117

Query: 251 LQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNL 310
           L     +S  H+  LE L +  N+L+       G +  L  L+L  N+++          
Sbjct: 118 L--RDTDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEIT---------- 163

Query: 311 SSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLK 356
                                 +    + +  +  + L     V +
Sbjct: 164 ----------------------NTGGLTRLKKVNWIDLTGQKCVNE 187

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 37/248 (14%), Positives = 84/248 (33%), Gaps = 34/248 (13%)

Query: 106 EFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRY 165
                L+     +L        +      LS +Q+ +  ++ +    +L  +   + L+ 
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI---QSLAGMQFFTNLKE 67

Query: 166 LNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNN 225
           L+L  + +++ S     +  L  L+ LS++   L  +  +          L  L L +N 
Sbjct: 68  LHLSHNQISDLSP----LKDLTKLEELSVNRNRLKNLNGIPS------ACLSRLFLDNNE 117

Query: 226 LTSSIYPWLPNISSIF--ISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFF 283
           L         ++  +     + +  N+L+ SI      +  LE L L  NE+        
Sbjct: 118 LRD-----TDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITN--TGGL 168

Query: 284 GNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNL 343
             +  +  ++L+  K          N           +  +++     IS  + SN  + 
Sbjct: 169 TRLKKVNWIDLTGQK--------CVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSY 220

Query: 344 KELHLANN 351
            +  +   
Sbjct: 221 VDGCVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 36/222 (16%), Positives = 76/222 (34%), Gaps = 31/222 (13%)

Query: 83  LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG---TVFAGPIPPQLGNLSRLQ 139
             +L  +++ N   ++         +   + L+ L L     +  +      L +L++L+
Sbjct: 37  QKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELHLSHNQISDLSP-----LKDLTKLE 88

Query: 140 HLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYL 199
            L +  N L +   +        L  L LD + L ++      +  L +L+ LS+ +  L
Sbjct: 89  ELSVNRNRLKNLNGIPSAC----LSRLFLDNNELRDTDS----LIHLKNLEILSIRNNKL 140

Query: 200 PPVIPLSLNHLNSSTSLETLVLSDNNLTS-SIYPWLPNISSIFISIDLGFNQLQGSIPES 258
                 S+  L   + LE L L  N +T+      L  ++     IDL   +      + 
Sbjct: 141 -----KSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVN----WIDLTGQKCVNEPVKY 191

Query: 259 FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLS 300
              +     ++          P +  N  S +   +      
Sbjct: 192 QPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 37/208 (17%), Positives = 76/208 (36%), Gaps = 26/208 (12%)

Query: 516 LENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT 575
                 +   PD    L N    +L    +T     S +  S ++  +   + +   +  
Sbjct: 4   QRPTPINQVFPDPG--LANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNI-QSLAG 58

Query: 576 WMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 635
              +  +NL  L L  N+    +   L  L  L+ L ++ N +   +         +++ 
Sbjct: 59  M--QFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NLN--GIPSACLSRL 111

Query: 636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSK 695
              +  ++D   L            L  ++ L + NN L   V   +  L  L  L+L  
Sbjct: 112 FLDNNELRDTDSL----------IHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHG 159

Query: 696 NHLTGQISPKIGQLKSLDFLDLSRNQLV 723
           N +T      + +LK ++++DL+  + V
Sbjct: 160 NEIT-NTGG-LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 29/182 (15%)

Query: 419 LDLASNQIK-----GKLPNLSSRFGTSNPGIDISSNHFEGLIPPL--PSNSSFLNLSKNR 471
            +L    +       +L  + +         +  +++ +  +  +   +N   L+LS N+
Sbjct: 24  QNLGKQSVTDLVSQKELSGVQN--------FNGDNSNIQS-LAGMQFFTNLKELHLSHNQ 74

Query: 472 FSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGF 531
            S  +S L  ++  KL  + ++ N L   L         L  L L+NN       DS+  
Sbjct: 75  IS-DLSPLKDLT--KLEELSVNRNRLK-NLNGI--PSACLSRLFLDNNELRD--TDSLIH 126

Query: 532 LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS 591
           L+N++ LS+ NN+L   +       S+L +LDL  N +           L  +  + L  
Sbjct: 127 LKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNTGGL---TRLKKVNWIDLTG 181

Query: 592 NK 593
            K
Sbjct: 182 QK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 579 ESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS 638
             L+N +  +L        +     +L+ +Q  +   +NI   +      FT + +   S
Sbjct: 16  PGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLS 71

Query: 639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHL 698
              I D   L            L  ++ L ++ N L             L  L L  N L
Sbjct: 72  HNQISDLSPL----------KDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNEL 118

Query: 699 TGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
                  +  LK+L+ L +  N+L       L  LS L V+DL  N ++
Sbjct: 119 R-DTDS-LIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEIT 163

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 55/313 (17%), Positives = 114/313 (36%), Gaps = 38/313 (12%)

Query: 79  ISPALLKLHD-LRHLNLSFNDFSGSPIPEFIGSL----SKLRYLDL----FGTVFAGPIP 129
           +  A       +  LNLS N        E +  L    + +  L+L         +  + 
Sbjct: 42  LIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101

Query: 130 PQL-GNLSRLQHLDLGSNYLFSTGNLDWLSHL----SYLRYLNLDESNLANSSDWF--QV 182
             L      +  LDLG N   S  + ++        + +  LNL  ++L   S     Q+
Sbjct: 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161

Query: 183 IGKLH-SLKTLSLHSCYLPP--VIPLSLNHLNSSTSLETLVLSDNNLT----SSIYPWLP 235
           +  +  ++ +L+L    L       L+    +   S+ +L LS N L     + +     
Sbjct: 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221

Query: 236 NISSIFISIDLGFNQLQGS----IPESFQHMVYLEHLRLSFNELEG-------GIPKFFG 284
           +I +  +S++L  N L G     +      + +L+ + L ++ ++         +   F 
Sbjct: 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281

Query: 285 NMCSLITLNLSNNKLSG----QLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI 340
           N+  +I ++ +  ++       +S +I+ LS      SL +  L  +     +    +  
Sbjct: 282 NIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341

Query: 341 SNLKELHLANNPL 353
             L+E      PL
Sbjct: 342 DELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 59/361 (16%), Positives = 107/361 (29%), Gaps = 66/361 (18%)

Query: 267 HLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYL 324
           + +L+ +     + +F      + +L+LS N L    S     L         S+ SL L
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNL 58

Query: 325 -ENSLT----GVISESFFSNISNLKELHLANNPL----------VLKLSHDWVPPFQLII 369
             NSL       + +   +  +N+  L+L+ N L           L        PF + +
Sbjct: 59  SGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA-----AIPFTITV 113

Query: 370 ISLSSCKIGP----HFPKWLQTQNQ-IELLDISNTGISDT----IPDWFWNLSNKFSFLD 420
           + L            F +        I  L++    +       +      +    + L+
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173

Query: 421 LASNQIKGK-LPNLSSRFGTSNPGI---DISSNHF-----EGLIPPLPSNSSF---LNLS 468
           L  N +  K    L+    +    +   D+S+N         L     S  +    LNL 
Sbjct: 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 469 KNRFSGS-ISFLCSI--SGSKLTYVDLSSNLLSGKLPDCWWTF-------DSLVILNLEN 518
            N   G  +  L  +  S   L  V L  +++     +              +++++   
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 519 NSF--SGRIPDSMGFLQ---NIQTLSLHNNRLT-----GELSSSFRNCSQLRLLDLGKNA 568
                S  IP S    +        SL N  L                 +LR        
Sbjct: 294 KEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

Query: 569 L 569
           L
Sbjct: 354 L 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 47/288 (16%), Positives = 100/288 (34%), Gaps = 47/288 (16%)

Query: 132 LGNLSRLQHLDLGSNYLFSTGNLDWLSHL----SYLRYLNLDESNLANSSDWFQVIGKL- 186
                 +  LDL  N L+S   ++ +       + +  LNL  ++L   +     + ++ 
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN--SDELVQIL 75

Query: 187 ----HSLKTLSLHSCYLPP--VIPLSLNHLNSSTSLETLVLSDNNLTSS----IYPWLPN 236
                ++ +L+L   +L       L         ++  L L  N+ +S           N
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 237 ISSIFISIDLGFNQLQG----SIPESFQHM-VYLEHLRLSFNEL--EGGIPKFFGNM--- 286
           + +   S++L  N L       + +    +   +  L L  N L  +             
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC--AELAKFLAS 193

Query: 287 --CSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYL-ENSLTGVISESF---FS 338
              S+ +L+LS N L     +    L+         + SL L  N L G   E+      
Sbjct: 194 IPASVTSLDLSANLLG---LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD 250

Query: 339 NISNLKELHLANNPL-------VLKLSHDWVPPFQLIIISLSSCKIGP 379
           ++ +L+ ++L  + +          L   +    ++I++  +  +I P
Sbjct: 251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 55/309 (17%), Positives = 104/309 (33%), Gaps = 79/309 (25%)

Query: 485 SKLTYVDLSSNLLSGK--------LPDCWWTFDSLVILNLENNSFSGRIPDSMGFL---- 532
             +T +DLS N L             +      S+  LNL  NS       +   L    
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANT---PASVTSLNLSGNSLG---FKNSDELVQIL 75

Query: 533 ----QNIQTLSLHNNRLTGE----LSSSFRNC-SQLRLLDLGKNALYGEIPTWMGESL-- 581
                N+ +L+L  N L+ +    L  +       + +LDLG N    +  +   ++   
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 582 --SNLIVLSLKSNKFHGKIPFQLCQL-----AFLQVLDLSLNNISGKIPKCFNNFTAMTQ 634
             +++  L+L+ N    K   +L Q+     A +  L+L  NN++    K          
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA---SKNCAELAKFLA 192

Query: 635 ERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLV-----GLV 689
              +                     ++    SL+LS N L      E+  +       +V
Sbjct: 193 SIPA---------------------SV---TSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 690 ALNLSKNHLTGQ----ISPKIGQLKSLDFLDLSRNQL-------VGGIPSSLSQLSGLSV 738
           +LNL  N L G     +      LK L  + L  + +          + ++   +  + +
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288

Query: 739 MDLSYNNLS 747
           +D +   + 
Sbjct: 289 VDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 52/345 (15%), Positives = 111/345 (32%), Gaps = 66/345 (19%)

Query: 445 DISSNHFEGLIPPLPSNSS---FLNLSKNRFSG-SISFLCSI---SGSKLTYVDLSSN-- 495
           ++ S     LI    +  +    LNLS N     +   L  I     + +T ++LS N  
Sbjct: 33  NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92

Query: 496 ------LLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFL--------QNIQTLSLH 541
                  L   L        ++ +L+L  N FS     S             +I +L+L 
Sbjct: 93  SYKSSDELVKTLAAI---PFTITVLDLGWNDFS---SKSSSEFKQAFSNLPASITSLNLR 146

Query: 542 NNRLTGE----LSSSFRNC-SQLRLLDLGKNALYGEIPTWMGESL----SNLIVLSLKSN 592
            N L  +    L        + +  L+L  N L  +    + + L    +++  L L +N
Sbjct: 147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206

Query: 593 KFHGKIPFQLCQL-----AFLQVLDLSLNNISGK----IPKCFNNFTAMTQERSSDPTIK 643
               K   +L  +       +  L+L LN + G     +    ++   +         +K
Sbjct: 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266

Query: 644 DKLMLTWKGSE--REYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQ 701
           +   ++ +  +        +  +  ++ +   ++ +    I +L+  ++       L  Q
Sbjct: 267 N---MSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

Query: 702 ISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746
                 + ++              IP  L +         +   L
Sbjct: 324 CLIFAQKHQTNIEDL--------NIPDELRES------IQTCKPL 354

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 48/299 (16%), Positives = 90/299 (30%), Gaps = 36/299 (12%)

Query: 59  HVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLD 118
           H    +L P  +  +     I         L  + L     +   +     S    + L 
Sbjct: 78  HFADFNLVPDGWGGYVYPW-IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136

Query: 119 LFG--TVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLS----YLRYLNLDE-S 171
           L          +         L+ LDL  + +       WLSH       L  LN+   +
Sbjct: 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG-HWLSHFPDTYTSLVSLNISCLA 195

Query: 172 NLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIY 231
           +  + S   +++ +  +LK+L L+       +      L  +  LE L            
Sbjct: 196 SEVSFSALERLVTRCPNLKSLKLNRA---VPLEKLATLLQRAPQLEELGTGGYTAEVR-- 250

Query: 232 PWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLIT 291
                              +   +  +      L  L   ++ +   +P  +     L T
Sbjct: 251 -----------------PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 292 LNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLAN 350
           LNLS   +    S  +  L   C    L+ L++ + +     E   S   +L+EL +  
Sbjct: 294 LNLSYATVQ---SYDLVKLLCQCP--KLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 34/224 (15%), Positives = 70/224 (31%), Gaps = 29/224 (12%)

Query: 134 NLSRLQHLDLGSNYLFSTGNLDWLS-HLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTL 192
           + + L+ + L    + +   L+ ++      + L L      ++     +     +LK L
Sbjct: 103 SYTWLEEIRL-KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKEL 161

Query: 193 SLHSCYLPPVIPLSLNHL-NSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQL 251
            L    +  V    L+H  ++ TSL +L +S              +S           +L
Sbjct: 162 DLRESDVDDVSGHWLSHFPDTYTSLVSLNISC---------LASEVS------FSALERL 206

Query: 252 QGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLS--NNKLSGQLSEIIQN 309
                        L+ L+L+       +         L  L       ++   +   +  
Sbjct: 207 -------VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259

Query: 310 LSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
             SGC    L+ L            + +S  S L  L+L+   +
Sbjct: 260 ALSGCK--ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 46/294 (15%), Positives = 92/294 (31%), Gaps = 31/294 (10%)

Query: 79  ISPALLKLHDLRHLNLSF-----NDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLG 133
           ++  L +   L  L              S +   +    +LR L  F       +P    
Sbjct: 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286

Query: 134 NLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLS 193
             SRL  L+L    + S   +  L     L+ L +   +    +    +      L+ L 
Sbjct: 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELR 344

Query: 194 LHSCYLPPVIP------LSLNHLNSS-TSLETLVLSDNNLT----SSIYPWLPNISSIFI 242
           +       + P        L  ++     LE+++     +T     +I    PN++   +
Sbjct: 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404

Query: 243 SI-------DLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLS 295
            I        L    L        +H   L  L LS    +            +  L+++
Sbjct: 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVA 464

Query: 296 NNKLSGQLSEIIQNLSSGCLENSLKSLYLEN-SLTGVISESFFSNISNLKELHL 348
               S      + ++ SGC  +SL+ L + +         +  S +  ++ L +
Sbjct: 465 FAGDS---DLGMHHVLSGC--DSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 63/507 (12%), Positives = 139/507 (27%), Gaps = 79/507 (15%)

Query: 134 NLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLS 193
            + R     +     ++      +     +R + L         +        +    + 
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98

Query: 194 LHSCYLPPVIPLSLNHLN-SSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQ 252
             S     +  + L  +  +   LE +  S  N    +       S        G   + 
Sbjct: 99  AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS------TDGLAAI- 151

Query: 253 GSIPESFQHMVYLEHLRLSFNELEG----GIPKFFGNMCSLITLNLSNNKLSGQLS-EII 307
                       L+ L L  ++++      +  F     SL++LN+S   L+ ++S   +
Sbjct: 152 ------AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSAL 203

Query: 308 QNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHD----WVP 363
           + L + C   +LKSL L  ++      +       L+EL        ++           
Sbjct: 204 ERLVTRC--PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261

Query: 364 PFQLIIISLSSCKIGP--HFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDL 421
                +  LS        + P      +++  L++S   +             K   L +
Sbjct: 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321

Query: 422 ASN-------QIKGKLPNL------SSRFGTSNPGIDISSNHFEGLIPPLP--------- 459
                      +     +L       S      P + ++      +    P         
Sbjct: 322 LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381

Query: 460 ---SNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVIL-- 514
              +N++ + +++NR               +T   L                D       
Sbjct: 382 RQMTNAALITIARNR-------------PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428

Query: 515 ----NLENNSFSGRIPDS-----MGFLQNIQTLSLHNNRLTGE-LSSSFRNCSQLRLLDL 564
               +L   S SG + D        + + ++ LS+     +   +      C  LR L++
Sbjct: 429 EHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488

Query: 565 GKNALYGEIPTWMGESLSNLIVLSLKS 591
                  +        L  +  L + S
Sbjct: 489 RDCPFGDKALLANASKLETMRSLWMSS 515

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)

Query: 245 DLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLS 304
            L  NQ    +P+   +  +L  + LS N +     + F NM  L+TL LS N+L     
Sbjct: 37  YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL----- 90

Query: 305 EIIQNLSSGCLE--NSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL-----VLKL 357
              + +     +   SL+ L L  +   V+ E  F+++S L  L +  NPL     +  L
Sbjct: 91  ---RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWL 147

Query: 358 SHDWV 362
           S DWV
Sbjct: 148 S-DWV 151

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 13/122 (10%)

Query: 455 IPP-LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLV- 512
           +P  +P + + L L  N+F+     L +     LT +DLS+N +S  L +   +F ++  
Sbjct: 25  LPKGIPRDVTELYLDGNQFTLVPKELSNYK--HLTLIDLSNNRIS-TLSN--QSFSNMTQ 79

Query: 513 --ILNLENNSFSGRIPDSMGF--LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNA 568
              L L  N     IP    F  L++++ LSLH N ++     +F + S L  L +G N 
Sbjct: 80  LLTLILSYNRLR-CIPPRT-FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137

Query: 569 LY 570
           LY
Sbjct: 138 LY 139

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 37/181 (20%), Positives = 59/181 (32%), Gaps = 39/181 (21%)

Query: 185 KLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISI 244
                + + LH     P I      L++  + + L LS NN           I  I    
Sbjct: 21  VATEAEKVELHGMI--PPIEKMDATLSTLKACKHLALSTNN-----------IEKI---- 63

Query: 245 DLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLS 304
                        S   M  L  L L  N ++  I        +L  L +S N++     
Sbjct: 64  ------------SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQI----- 105

Query: 305 EIIQNLSSGCLENSLKSLYLE-NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVP 363
             +  +    L N L+ LY+  N +T        + +  L++L LA NPL      +   
Sbjct: 106 ASLSGIE--KLVN-LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162

Query: 364 P 364
            
Sbjct: 163 S 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 18/121 (14%)

Query: 83  LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG---TVFAGPIPPQLGNLSRLQ 139
           L  + +LR L+L  N      I         L  L +        +G     +  L  L+
Sbjct: 66  LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLSG-----IEKLVNLR 118

Query: 140 HLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQ--------VIGKLHSLKT 191
            L + +N + + G +D L+ L  L  L L  + L N              V+ +L +LK 
Sbjct: 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178

Query: 192 L 192
           L
Sbjct: 179 L 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 11/101 (10%)

Query: 128 IPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLH 187
           +   L  L   +HL L +N +    +L     +  LR L+L  + +    +   V     
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISSLS---GMENLRILSLGRNLIKKIENLDAV---AD 93

Query: 188 SLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTS 228
           +L+ L +    +      SL+ +    +L  L +S+N +T+
Sbjct: 94  TLEELWISYNQIA-----SLSGIEKLVNLRVLYMSNNKITN 129

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 35/154 (22%)

Query: 79  ISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRL 138
           +   L  L   +HL LS N+            + K+  L                 +  L
Sbjct: 40  MDATLSTLKACKHLALSTNN------------IEKISSLS---------------GMENL 72

Query: 139 QHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCY 198
           + L LG N +    NLD ++    L  L +  + +A+ S     I KL +L+ L + +  
Sbjct: 73  RILSLGRNLIKKIENLDAVADT--LEELWISYNQIASLSG----IEKLVNLRVLYMSNNK 126

Query: 199 LPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYP 232
           +       ++ L +   LE L+L+ N L +    
Sbjct: 127 ITNW--GEIDKLAALDKLEDLLLAGNPLYNDYKE 158

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 86  LHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGS 145
           L     ++ S N+     + +    L +L+ L +               L  L  L L +
Sbjct: 41  LDQFDAIDFSDNEIR--KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 146 NYLFSTGNLDWLSHLSYLRYLNLDESNLANSSD-WFQVIGKLHSLKTL 192
           N L   G+LD L+ L  L YL +  + + N       VI K+  ++ L
Sbjct: 98  NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 13/120 (10%)

Query: 209 HLNSSTSLETLVLSDNNLTS--SIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLE 266
              ++     L L    +    ++   L      F +ID   N+++  + + F  +  L+
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLGATLDQ----FDAIDFSDNEIR-KL-DGFPLLRRLK 67

Query: 267 HLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLEN 326
            L ++ N +          +  L  L L+NN L  +L + +  L+   L++ L  L +  
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGD-LDPLA--SLKS-LTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 11/112 (9%)

Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
            +   +DL    +   + +   T D    ++  +N    ++ D    L+ ++TL ++NNR
Sbjct: 19  VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNR 75

Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMG----ESLSNLIVLSLKSN 592
           +        +    L  L L  N     +          SL +L  L +  N
Sbjct: 76  ICRIGEGLDQALPDLTELILTNN----SLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 513 ILNLENNSFSGRIPDSMGF--LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALY 570
           ++ L        I  +  +      + L L   ++   + +      Q   +D   N + 
Sbjct: 1   MVKLTAE----LIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI- 54

Query: 571 GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS 619
            ++  +    L  L  L + +N+           L  L  L L+ N++ 
Sbjct: 55  RKLDGF--PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 257 ESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLE 316
             + + V    L L   ++   I      +     ++ S+N++       +       L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-----KLDGFP--LLR 64

Query: 317 NSLKSLYLENSLTGVISESFFSNISNLKELHLANN 351
             LK+L + N+    I E     + +L EL L NN
Sbjct: 65  R-LKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 110 SLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLD 169
           +  + R LDL G      I      L +   +D   N +           L  L+ L ++
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG---FPLLRRLKTLLVN 72

Query: 170 ESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTS 228
            + +    +       L  L  L L +  L       L+ L S  SL  L +  N +T+
Sbjct: 73  NNRICRIGEGLD--QALPDLTELILTNNSLV--ELGDLDPLASLKSLTYLCILRNPVTN 127

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 8/103 (7%)

Query: 254 SIPESFQHMVYLEHLRLSFNELEGGIPKF-FGNMCSLITLNLSNNKLSGQLSEIIQNLSS 312
                      L  L +   +    +       +  L  L +  + L     +       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP- 80

Query: 313 GCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVL 355
                 L  L L  +    +S      +S L+EL L+ NPL  
Sbjct: 81  -----RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 8/101 (7%)

Query: 128 IPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLAN-SSDWFQVIGKL 186
               L     L  L + +        L  L  L  LR L + +S L   + D F      
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---FT 79

Query: 187 HSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLT 227
             L  L+L    L  +   ++  L    SL+ LVLS N L 
Sbjct: 80  PRLSRLNLSFNALESLSWKTVQGL----SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 206 SLNHLNSSTSLETLVLSDNNLTSSIYPW-----LPNISSIFISIDLGFNQLQGSIPESFQ 260
           SL+HL  + +L  L + +      +        L  + ++     +  + L+   P++F 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNL----TIVKSGLRFVAPDAFH 77

Query: 261 HMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKL 299
               L  L LSFN LE    K    + SL  L LS N L
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 472 FSGSISFLCSISG-SKLTYVDLSSNLLSGKLPDCWWTFD---SLVILNLENNSFSGRIPD 527
             G++  L  + G   LT + + +      L            L  L +  +      PD
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 528 SMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNAL 569
           +  F   +  L+L  N L      + +  S L+ L L  N L
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 6/148 (4%)

Query: 661 LGLVKSLELSNNNLNGAVPEEIM-DLVGLVALNLSKNHLTGQISPKIGQ-LKSLDFLDLS 718
              +  L + N      +    +  L  L  L + K+ L   ++P        L  L+LS
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS 88

Query: 719 RNQLVGGIPSSLSQLSGLSVMDLSYN--NLSGKIPTVTQLQSFNDTVYAGNPELCGLPLP 776
            N L      ++  LS L  + LS N  + S  +  + + +             C    P
Sbjct: 89  FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGP 147

Query: 777 NKCRDEESAAGPGITEGRDDADTSEDED 804
                  S   P +     +A     +D
Sbjct: 148 LAHMPNASCGVPTLKVQVPNASVDVGDD 175

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 26/131 (19%), Positives = 41/131 (31%), Gaps = 23/131 (17%)

Query: 45  CCKW-TGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSP 103
           C    +GLRC+       L  L                      +L  L +         
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPG------------------AENLTELYIENQQHLQHL 47

Query: 104 IPEFIGSLSKLRYLDLFGTVFAGPIPPQ-LGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY 162
               +  L +LR L +  +     + P       RL  L+L  N L  + +   +  LS 
Sbjct: 48  ELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLS- 104

Query: 163 LRYLNLDESNL 173
           L+ L L  + L
Sbjct: 105 LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 1/102 (0%)

Query: 671 NNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPK-IGQLKSLDFLDLSRNQLVGGIPSS 729
             +        +     L  L +        +  + +  L  L  L + ++ L    P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 730 LSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELC 771
                 LS ++LS+N L        Q  S  + V +GNP  C
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 22/157 (14%)

Query: 200 PPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPES- 258
           P  IP            E L L    L + +        +    ++L +NQLQ ++    
Sbjct: 30  PSGIP---------ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQ-TLSAGV 78

Query: 259 FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN- 317
           F  +  L  L L+ N+L       F ++  L  L L  N+L        ++L SG  +  
Sbjct: 79  FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL--------KSLPSGVFDRL 130

Query: 318 -SLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
             LK L L  +    I    F  ++NL+ L L+ N L
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 19/154 (12%)

Query: 205 LSLNHLNSSTSLETLVLSDNNLTS---SIYPWLPNISSIFISIDLGFNQLQGSIPES-FQ 260
           LS       T L  L L  N L +    ++  L  + ++     L  NQL  S+P   F 
Sbjct: 50  LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL----GLANNQLA-SLPLGVFD 104

Query: 261 HMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--S 318
           H+  L+ L L  N+L+      F  +  L  L L+ N+L        Q++ +G  +   +
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL--------QSIPAGAFDKLTN 156

Query: 319 LKSLYLENSLTGVISESFFSNISNLKELHLANNP 352
           L++L L  +    +    F  +  L+ + L  N 
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 53/190 (27%), Positives = 70/190 (36%), Gaps = 49/190 (25%)

Query: 117 LDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYL--FSTGNLDWLSHLSYLRYLNLDESNLA 174
           LDL  T  A         L++L  L+L  N L   S G  D    L+ L  L L  + LA
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD---DLTELGTLGLANNQLA 96

Query: 175 NSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWL 234
           +                       LP  +   L      T L+ L L  N L S     L
Sbjct: 97  S-----------------------LPLGVFDHL------TQLDKLYLGGNQLKS-----L 122

Query: 235 PNISSIFISI------DLGFNQLQGSIPES-FQHMVYLEHLRLSFNELEGGIPKFFGNMC 287
           P+   +F  +       L  NQLQ SIP   F  +  L+ L LS N+L+      F  + 
Sbjct: 123 PS--GVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179

Query: 288 SLITLNLSNN 297
            L T+ L  N
Sbjct: 180 KLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 42/190 (22%), Positives = 66/190 (34%), Gaps = 41/190 (21%)

Query: 536 QTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH 595
           + L L +  L     ++FR  ++L  L+L  N L   +   + + L+ L  L L +N+  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 596 GKIP---FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKG 652
             +P   F    L  L  L L  N +       F+  T + +                  
Sbjct: 97  -SLPLGVFD--HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE------------------ 135

Query: 653 SEREYRSTLGLVKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQISPKIGQLKS 711
                         L L+ N L  ++P    D L  L  L+LS N L         +L  
Sbjct: 136 --------------LRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180

Query: 712 LDFLDLSRNQ 721
           L  + L  NQ
Sbjct: 181 LQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 34/181 (18%)

Query: 392 ELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHF 451
           E LD+ +TG++      F  L+ K ++L+L  NQ++  L            G+      F
Sbjct: 38  EKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQ-TLS----------AGV------F 79

Query: 452 EGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSL 511
           + L     +    L L+ N+ + S+        ++L  + L  N L   LP     FD L
Sbjct: 80  DDL-----TELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPS--GVFDRL 130

Query: 512 V---ILNLENNSFSGRIPDSMGF--LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGK 566
                L L  N     IP    F  L N+QTLSL  N+L      +F    +L+ + L  
Sbjct: 131 TKLKELRLNTNQLQ-SIPAGA-FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188

Query: 567 N 567
           N
Sbjct: 189 N 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLV 723
           + L+L +  L          L  L  LNL  N L   +S  +   L  L  L L+ NQL 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 724 ---GGIPSSLSQLSGLSVMDLSYNNLSGKIPT-----VTQLQ 757
               G+   L+QL  L    L  N L   +P+     +T+L+
Sbjct: 97  SLPLGVFDHLTQLDKL---YLGGNQLK-SLPSGVFDRLTKLK 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 4/118 (3%)

Query: 76  RGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNL 135
            G I     +  +L  L+L             +  L KL+ L+L      G +      L
Sbjct: 38  DGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 136 SRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSD-WFQVIGKLHSLKTL 192
             L HL+L  N L     L+ L  L  L+ L+L    + N +D    V   L  L  L
Sbjct: 95  PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 203 IPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHM 262
           I L L +   + ++  LVL +          L         + L    L  S+  +   +
Sbjct: 14  IHLELRNRTPA-AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKL 70

Query: 263 VYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSL 322
             L+ L LS N + GG+      + +L  LNLS NKL       ++ L    LE  LKSL
Sbjct: 71  PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI--STLEPLK--KLEC-LKSL 125

Query: 323 YLEN 326
            L N
Sbjct: 126 DLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 664 VKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL 722
           V+ L L N   N    E +    V L  L+L    L   +S  + +L  L  L+LS N++
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRI 83

Query: 723 VGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSF 759
            GG+     +L  L+ ++LS N L   I T+  L+  
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKL 119

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 507 TFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGK 566
            F +L  L+L N      +  ++  L  ++ L L  NR+ G L         L  L+L  
Sbjct: 47  EFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 567 NALYGEIPTWMGESLSNLIVLSLKSN 592
           N L         + L  L  L L + 
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 10/113 (8%)

Query: 88  DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFG---TVFAGPIPPQLGNLSRLQHLDLG 144
            +R L L     +   I         L +L L        +      L  L +L+ L+L 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-----LPKLPKLKKLELS 79

Query: 145 SNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSC 197
            N +F   ++     L  L +LNL  + L + S   + + KL  LK+L L +C
Sbjct: 80  ENRIFGGLDML-AEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 52/266 (19%), Positives = 90/266 (33%), Gaps = 17/266 (6%)

Query: 43  RDCCKWTGLRCSNKTNHV-ILLDLQPIDFDSFPLRGTISPALLKLH----DLRHLNLSFN 97
            D   W  L  + K  H  +   L      +F    +     L  H     ++H++LS +
Sbjct: 44  SDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 103

Query: 98  DFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWL 157
               S +   +   SKL+ L L G   + PI   L   S L  L+L     FS   L  L
Sbjct: 104 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163

Query: 158 -SHLSYLRYLNLDESNLANSSDWFQVIGKL-HSLKTLSLHSCYLPPVIPLSLNHLNSS-T 214
            S  S L  LNL              +  +  ++  L+L       +    L+ L     
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-KNLQKSDLSTLVRRCP 222

Query: 215 SLETLVLSD-NNLTSSIYPWL---PNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRL 270
           +L  L LSD   L +  +        +  + +S       +          +  L+ L++
Sbjct: 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS---RCYDIIPETLLELGEIPTLKTLQV 279

Query: 271 SFNELEGGIPKFFGNMCSLITLNLSN 296
                +G + +        + +N S+
Sbjct: 280 FGIVPDGTL-QLLKEALPHLQINCSH 304

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 37/223 (16%)

Query: 139 QHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCY 198
              +L    +      + L+ +  +   N       +     Q I  L +++ L+L    
Sbjct: 22  IKANLKKKSVTDAVTQNELNSIDQIIANN-------SDIKSVQGIQYLPNVRYLALGGNK 74

Query: 199 LPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFIS------IDLGFNQLQ 252
           L       ++ L   T+L  L+L+ N L S     LP  + +F        + L  NQLQ
Sbjct: 75  LH-----DISALKELTNLTYLILTGNQLQS-----LP--NGVFDKLTNLKELVLVENQLQ 122

Query: 253 GSIPES-FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLS 311
            S+P+  F  +  L +L L+ N+L+      F  + +L  L+LS N+L        Q+L 
Sbjct: 123 -SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL--------QSLP 173

Query: 312 SGCLEN--SLKSLYLENSLTGVISESFFSNISNLKELHLANNP 352
            G  +    LK L L  +    + +  F  +++L+ + L +NP
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 29/157 (18%)

Query: 206 SLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI--FISIDLGFNQLQGSIPESFQHMV 263
                N   S++ ++ +++++ S     +  I  +     + LG N+L   I  + + + 
Sbjct: 33  DAVTQNELNSIDQIIANNSDIKS-----VQGIQYLPNVRYLALGGNKLH-DIS-ALKELT 85

Query: 264 YLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKS 321
            L +L L+ N+L+      F  + +L  L L  N+L        Q+L  G  +   +L  
Sbjct: 86  NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL--------QSLPDGVFDKLTNLTY 137

Query: 322 LYL-ENSLT----GVISESFFSNISNLKELHLANNPL 353
           L L  N L     GV     F  ++NL EL L+ N L
Sbjct: 138 LNLAHNQLQSLPKGV-----FDKLTNLTELDLSYNQL 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 24/174 (13%)

Query: 185 KLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTS-SIYPWLPNISSIFIS 243
           +L+S+  +  ++  +      S+  +    ++  L L  N L   S    L N++ +   
Sbjct: 39  ELNSIDQIIANNSDIK-----SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYL--- 90

Query: 244 IDLGFNQLQGSIPES-FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQ 302
             L  NQLQ S+P   F  +  L+ L L  N+L+      F  + +L  LNL++N+L   
Sbjct: 91  -ILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL--- 145

Query: 303 LSEIIQNLSSGCLEN--SLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPL 353
                Q+L  G  +   +L  L L  N L   + E  F  ++ LK+L L  N L
Sbjct: 146 -----QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 26/167 (15%)

Query: 459 PSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLV---ILN 515
            + +   NL K   + +++       + +  +  +++ +   +         L     L 
Sbjct: 18  FAETIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIK-SVQ----GIQYLPNVRYLA 69

Query: 516 LENNSFSGRIPDSMG-F--LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGE 572
           L  N         +     L N+  L L  N+L    +  F   + L+ L L +N L   
Sbjct: 70  LGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QS 123

Query: 573 IPTWMGESLSNLIVLSLKSNKFHGKIP---FQLCQLAFLQVLDLSLN 616
           +P  + + L+NL  L+L  N+    +P   F   +L  L  LDLS N
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFD--KLTNLTELDLSYN 167

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 83  LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLD 142
             +  +L  L+      +       +  L+KL+ L+L     +G +         L HL+
Sbjct: 38  TDEFEELEFLSTINVGLT---SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 143 LGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSD-WFQVIGKLHSLKTL 192
           L  N +     ++ L  L  L+ L+L    + N +D    V   L  L  L
Sbjct: 95  LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 246 LGFNQLQGSIPESFQHMVYLEHLRLSFNELE--GGIPKFFGNMCSLITLNLSNNKLSGQL 303
                 +G +         LE L      L     +PK    +  L  L LS+N++SG L
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKLKKLELSDNRVSGGL 80

Query: 304 SEIIQNLSSGCLENSLKSLYLENSLTGVISE-SFFSNISNLKELHLANNPL 353
             + +   +      L  L L  +    +S       + NLK L L N  +
Sbjct: 81  EVLAEKCPN------LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 212 SSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLS 271
           + + ++ LVL ++         L +       +      L  SI  +   +  L+ L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 272 FNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLEN 326
            N + GG+        +L  LNLS NK+       I+ L    LEN LKSL L N
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL--STIEPLK--KLEN-LKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 664 VKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL 722
           VK L L N+  N    E + D    L  L+     LT  I+  + +L  L  L+LS N++
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRV 76

Query: 723 VGGIPSSLSQLSGLSVMDLSYNNLS 747
            GG+     +   L+ ++LS N + 
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 485 SKLTYVDLSSN-LLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGF--LQNIQTLSLH 541
           S +  + L ++    GKL      F+ L  L+  N      +        L  ++ L L 
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKLKKLELS 72

Query: 542 NNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN 592
           +NR++G L      C  L  L+L  N +         + L NL  L L + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 245 DLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLS 304
           +L  N+LQ      F  +  L  L LS N+++      F  +  L  L L  NKL     
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL----- 88

Query: 305 EIIQNLSSGCLEN--SLKSLYLENSLTGVISESFFSNISNLKELHLANNP 352
              Q+L +G  +    LK L L+ +    + +  F  +++L+++ L  NP
Sbjct: 89  ---QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 21/155 (13%)

Query: 200 PPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPES- 258
           P  IP         T+ + L L DN +T  + P + +       + LG NQL  ++P   
Sbjct: 35  PAGIP---------TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLG-ALPVGV 83

Query: 259 FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLE-N 317
           F  +  L  L L  N+L       F  +  L  L +  NKL          L  G     
Sbjct: 84  FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL--------TELPRGIERLT 135

Query: 318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNP 352
            L  L L+ +    I    F  +S+L   +L  NP
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 23/122 (18%)

Query: 185 KLHSLKTLSLHSC---YLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIF 241
            L +LK L L S     LP  +  SL      T L  L L  N LT      LP  S++F
Sbjct: 62  SLINLKELYLGSNQLGALPVGVFDSL------TQLTVLDLGTNQLTV-----LP--SAVF 108

Query: 242 IS------IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLS 295
                   + +  N+L   +P   + + +L HL L  N+L+      F  + SL    L 
Sbjct: 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167

Query: 296 NN 297
            N
Sbjct: 168 GN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 513 ILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGE 572
           IL L +N  +   P     L N++ L L +N+L       F + +QL +LDLG N L   
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-TV 102

Query: 573 IPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM 632
           +P+ + + L +L  L +  NK   ++P  + +L  L  L L  N +       F+  +++
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 633 T 633
           T
Sbjct: 162 T 162

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.7 bits (120), Expect = 1e-06
 Identities = 31/255 (12%), Positives = 66/255 (25%), Gaps = 39/255 (15%)

Query: 38  PEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSF- 96
            ++ +        +    K   +  + +    ++           +       H    F 
Sbjct: 87  YDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFW 146

Query: 97  -------NDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLF 149
                   + S     +    L  +  L+         +         L+ L++ S    
Sbjct: 147 GDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGG-L 205

Query: 150 STGNLDWL--SHLSYLRYLNLDESNLANSSD-------WFQVIGKLHSLKTLSLHSCYLP 200
               ++ +  S L  L  L L         D             +  +LK L +      
Sbjct: 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265

Query: 201 PVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQ 260
            V+       +    LET+ +S   LT                 D G   L     +   
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLT-----------------DEGARLL----LDHVD 304

Query: 261 HMVYLEHLRLSFNEL 275
            + +L+ + + +N L
Sbjct: 305 KIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 7e-06
 Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 16/163 (9%)

Query: 77  GTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLG--N 134
             +SP L  +  L +L +       + +         L+ L++        +   +   +
Sbjct: 162 VDLSPVLDAMPLLNNLKIKG----TNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 135 LSRLQHLDL---GSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKL----- 186
           L  L+ L L     +Y F      +    S  R+ NL    + ++ +   V+        
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 187 -HSLKTLSLHSCYLPPV-IPLSLNHLNSSTSLETLVLSDNNLT 227
              L+T+ + +  L      L L+H++    L+ + +  N L+
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 243 SIDLGFNQLQGSIPE-SFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG 301
            + L  N+L     +  F  + +L  L L  N+L G  P  F     +  L L  NK+  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-- 90

Query: 302 QLSEIIQNLSSGCLEN--SLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
                 + +S+        LK+L L ++    +    F ++++L  L+LA+NP 
Sbjct: 91  ------KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 455 IPP-LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLV- 512
           IP  +P +++ L L+ N      S         L  ++L  N L+  +      F+    
Sbjct: 23  IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEP--NAFEGASH 79

Query: 513 --ILNLENNSFSGRIPDSMGF--LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
              L L  N     I + M F  L  ++TL+L++N+++  +  SF + + L  L+L  N
Sbjct: 80  IQELQLGENKIK-EISNKM-FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 22/156 (14%)

Query: 200 PPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPES- 258
           P  IP              L L  N+L S +   + +  +    + LG N+LQ S+P   
Sbjct: 23  PTGIP---------AQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGV 71

Query: 259 FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN- 317
           F  +  L +L LS N+L+      F  +  L  L L+ N+L        Q+L  G  +  
Sbjct: 72  FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL--------QSLPDGVFDKL 123

Query: 318 -SLKSLYLENSLTGVISESFFSNISNLKELHLANNP 352
             LK L L  +    + +  F  +++L+ + L +NP
Sbjct: 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 235 PNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNL 294
             I +    +DL  N L+      F  +  L  L L  N+L+      F  + SL  LNL
Sbjct: 24  TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83

Query: 295 SNNKLSGQLSEIIQNLSSGCLEN--SLKSLYL-ENSLTGVISESFFSNISNLKELHLANN 351
           S N+L        Q+L +G  +    LK L L  N L   + +  F  ++ LK+L L  N
Sbjct: 84  STNQL--------QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQN 134

Query: 352 PL 353
            L
Sbjct: 135 QL 136

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 44/220 (20%), Positives = 79/220 (35%), Gaps = 37/220 (16%)

Query: 214 TSLETLVLSDNNLT----SSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMV----YL 265
           +SL  L L+   +T    + +   L +       ++L   QL    P   + ++      
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD---PAGLRTLLPVFLRA 128

Query: 266 EHLRLSFNELEGGIPKFFG-----NMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN-SL 319
             L L  N L     K        + C + TL LSNN L+   +  +  L  G   N S+
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT---AAGVAVLMEGLAGNTSV 185

Query: 320 KSLYL-ENSLT--GV--ISESFFSNISNLKELHLANNPL----VLKLSHDWVPPFQLIII 370
             L L    L   G+  ++     N   L+EL++A N       L L+        L ++
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALALARAAREHPSLELL 244

Query: 371 SLSSCKIGPHFPKWL-------QTQNQIELLDISNTGISD 403
            L   ++     + L       +   ++ +     T +S+
Sbjct: 245 HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 52/344 (15%), Positives = 90/344 (26%), Gaps = 75/344 (21%)

Query: 79  ISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRL 138
              +   L  LR LNL+    +    P     ++ +                       L
Sbjct: 64  QRFSAEVLSSLRQLNLAGVRMT----PVKCTVVAAVL----------------GSGRHAL 103

Query: 139 QHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKL-----HSLKTLS 193
             ++L S  L   G    L      R L L  ++L   +   + +  L       + TL 
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA--CKDLRDLLLHDQCQITTLR 161

Query: 194 LHSCYLPP--VIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQL 251
           L +  L    V  L    L  +TS+  L L    L                  D G   L
Sbjct: 162 LSNNPLTAAGVAVLM-EGLAGNTSVTHLSLLHTGLG-----------------DEGLELL 203

Query: 252 QGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNM----CSLITLNLSNNKLS----GQL 303
                        L+ L +++N                  SL  L+L  N+LS      L
Sbjct: 204 A----AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259

Query: 304 SEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVP 363
            ++      G     +     E +          S +         N     +       
Sbjct: 260 RDLGGAAEGGAR---VVVSLTEGTAVSEYWSVILSEV-------QRNLNSWDRARVQ--R 307

Query: 364 PFQLIIISLSSCKIGP----HFPKWLQTQNQIELLDISNTGISD 403
             +L++  L   +          + L+ + ++  L         
Sbjct: 308 HLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGS 351

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 10/144 (6%)

Query: 82  ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL 141
           A+++ H  +     +N     P+ ++     K++ +D   +         +  L  ++ +
Sbjct: 36  AMVRYHGQQRWQKDYNHLPTGPLDKY-----KIQAIDATDSCIMSIGFDHMEGLQYVEKI 90

Query: 142 DLGSNYLFSTGNLDWLSHLSYLRY--LNLDESNLANSSDW-FQVIGKLHSLKTLSLHSCY 198
            L   +    G L+ LS L  L+   L ++  +  N +D     +    +LK L L    
Sbjct: 91  RLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL- 149

Query: 199 LPPVIPLSLNHLNSSTSLETLVLS 222
            P V           TSL +L L 
Sbjct: 150 -PGVKEKEKIVQAFKTSLPSLELK 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	833
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.41
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.91
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.87
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.3
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.16
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.07
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.7

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.4e-92  Score=838.51  Aligned_cols=723  Identities=29%  Similarity=0.413  Sum_probs=524.6

Q ss_pred             CCCCCCCHHHHHHHHHhhhcCcCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEECCCCCCCCCCccee---cCcc
Q 048006            6 SNIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGT---ISPA   82 (833)
Q Consensus         6 ~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~---~~~~   82 (833)
                      +++..+.++|++||++||+++.||. ++++|+   .+++||+|+||+|+  ++||++|+|++     ..+.|.   ++++
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~-----~~l~g~~~~l~~~   72 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS-----KPLNVGFSAVSSS   72 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT-----SCCCEEHHHHHHH
T ss_pred             CccccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC-----CCcCCccCccChh
Confidence            3445567899999999999999988 999997   47899999999998  69999999999     788998   8999


Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCc--ccCCccccceecccCccCCCCCCcccccCC
Q 048006           83 LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPP--QLGNLSRLQHLDLGSNYLFSTGNLDWLSHL  160 (833)
Q Consensus        83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l  160 (833)
                      +.++++|+.++++.+.+.  .+|+.|+.+++|++|+|++|.+.|.+|.  .++++++|++|++++|.+........+.++
T Consensus        73 l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  150 (768)
T 3rgz_A           73 LLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL  150 (768)
T ss_dssp             TTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred             HhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC
Confidence            999999999999999876  4678999999999999999999998998  999999999999999998753344445899


Q ss_pred             CCCcEEecCCCCCCCCchhHHh---hcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCccccc
Q 048006          161 SYLRYLNLDESNLANSSDWFQV---IGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNI  237 (833)
Q Consensus       161 ~~L~~L~Ls~n~~~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l  237 (833)
                      ++|++|++++|.+++.  .+..   ++++++|++|++++|.+.+..|.     ..+++|++|++++|.+++.+|. +.++
T Consensus       151 ~~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~-l~~l  222 (768)
T 3rgz_A          151 NSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDV-----SRCVNLEFLDVSSNNFSTGIPF-LGDC  222 (768)
T ss_dssp             TTCSEEECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCBC-----TTCTTCCEEECCSSCCCSCCCB-CTTC
T ss_pred             CCCCEEECCCCccCCc--CChhhhhhccCCCCCEEECCCCcccccCCc-----ccCCcCCEEECcCCcCCCCCcc-cccC
Confidence            9999999999999875  3344   78999999999999999887653     2348999999999999988777 8888


Q ss_pred             ccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhc-CCcccc
Q 048006          238 SSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNL-SSGCLE  316 (833)
Q Consensus       238 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~~~~~  316 (833)
                      ++ |++|++++|.+++.+|..++.+++|++|++++|++++.+|..  .+++|++|++++|++++.+|..+... +     
T Consensus       223 ~~-L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~-----  294 (768)
T 3rgz_A          223 SA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD-----  294 (768)
T ss_dssp             CS-CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT-----
T ss_pred             CC-CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC-----
Confidence            88 999999999999888999999999999999999998877765  78899999999998887777665543 4     


Q ss_pred             CCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCC-ccCCccccEEEccCccCCCCCChhhcccc-cccEE
Q 048006          317 NSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHD-WVPPFQLIIISLSSCKIGPHFPKWLQTQN-QIELL  394 (833)
Q Consensus       317 ~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~l~~l~-~L~~L  394 (833)
                       +|++|++++|.+....+..|.++++|++|++++|.+.+.++.. +..+++|++|++++|.+++.+|..+..++ +|++|
T Consensus       295 -~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L  373 (768)
T 3rgz_A          295 -TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL  373 (768)
T ss_dssp             -TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred             -cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence             6667777555444333335666666666666666666554443 55555555555555555555555555554 55555


Q ss_pred             eecCCccccccchhHHhh-cccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccc
Q 048006          395 DISNTGISDTIPDWFWNL-SNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFS  473 (833)
Q Consensus       395 ~Ls~n~i~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~  473 (833)
                      ++++|.+++.+|..+... .++|++|++++|.+++.+|... ..+                     ++|+.|++++|+++
T Consensus       374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l---------------------~~L~~L~Ls~N~l~  431 (768)
T 3rgz_A          374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNC---------------------SELVSLHLSFNYLS  431 (768)
T ss_dssp             ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGC---------------------TTCCEEECCSSEEE
T ss_pred             EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcC---------------------CCCCEEECcCCccc
Confidence            555555555555444331 1245555555555555444321 233                     34455555555555


Q ss_pred             ccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccc
Q 048006          474 GSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSF  553 (833)
Q Consensus       474 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  553 (833)
                      +.++..... +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+
T Consensus       432 ~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          432 GTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             SCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             CcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence            444432221 4556666666666665566666666666666666666665556556666666666666666666666666


Q ss_pred             cCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCC-----------------
Q 048006          554 RNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLN-----------------  616 (833)
Q Consensus       554 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N-----------------  616 (833)
                      +.+++|++|++++|+++|.+|..+. .+++|++|++++|+++|.+|..+.....+..+++..+                 
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG  589 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence            6666666666666666655555555 4566666666666666666655555444433333221                 


Q ss_pred             -----cCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEE
Q 048006          617 -----NISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVAL  691 (833)
Q Consensus       617 -----~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  691 (833)
                           .+.+..+..+..+..+...+++.+.+        .|.....+..+++|+.|||++|+++|.+|..++++++|+.|
T Consensus       590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~--------~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  661 (768)
T 3rgz_A          590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVY--------GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL  661 (768)
T ss_dssp             SEEEEECTTCCGGGGGGGGGTCCSCTTSCEE--------EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred             cccccccccccchhhhcccccccccccccee--------cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence                 12222333333333333333322222        22233334455667999999999999999999999999999


Q ss_pred             ECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCC
Q 048006          692 NLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELC  771 (833)
Q Consensus       692 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc  771 (833)
                      +|++|+++|.+|..|+++++|++|||++|+++|.+|..+..+++|++||+++|+++|.||..+++.++...+|.|||++|
T Consensus       662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lc  741 (768)
T 3rgz_A          662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC  741 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEE
T ss_pred             eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCc
Q 048006          772 GLPLPNKCRDEESAAGPGIT  791 (833)
Q Consensus       772 ~~~~~~~c~~~~~~~~~~~~  791 (833)
                      |.|+. .|....+..++++.
T Consensus       742 g~~l~-~C~~~~~~~~~~~~  760 (768)
T 3rgz_A          742 GYPLP-RCDPSNADGYAHHQ  760 (768)
T ss_dssp             STTSC-CCCSCC--------
T ss_pred             CCCCc-CCCCCccCCCCCCC
Confidence            99987 89877777666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.8e-71  Score=658.84  Aligned_cols=663  Identities=26%  Similarity=0.344  Sum_probs=481.4

Q ss_pred             CCccc-ceEecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCC---ccccccCCCCCCEEEcc
Q 048006           45 CCKWT-GLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSP---IPEFIGSLSKLRYLDLF  120 (833)
Q Consensus        45 ~c~w~-gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~---~p~~~~~l~~L~~L~Ls  120 (833)
                      --+|. +..|+.|.|....   .                    .+++.|+|+++.+.+ .   +|+.+.++++|++++++
T Consensus        30 l~~W~~~~~~C~w~gv~C~---~--------------------~~v~~L~L~~~~l~g-~~~~l~~~l~~L~~L~~l~~~   85 (768)
T 3rgz_A           30 LPDWSSNKNPCTFDGVTCR---D--------------------DKVTSIDLSSKPLNV-GFSAVSSSLLSLTGLESLFLS   85 (768)
T ss_dssp             STTCCTTSCGGGSTTEEEE---T--------------------TEEEEEECTTSCCCE-EHHHHHHHTTTCTTCCEEECT
T ss_pred             ccCCCCCCCCcCCcceEEC---C--------------------CcEEEEECCCCCcCC-ccCccChhHhccCcccccCCc
Confidence            34795 6677777664321   1                    368899999999987 4   78889999999999999


Q ss_pred             CCCCCCCCCcccCCccccceecccCccCCCCCCcc--cccCCCCCcEEecCCCCCCCCchhHHhh-cCCCCCCEEEccCC
Q 048006          121 GTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLD--WLSHLSYLRYLNLDESNLANSSDWFQVI-GKLHSLKTLSLHSC  197 (833)
Q Consensus       121 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~--~l~~l~~L~~L~Ls~n~~~~~~~~~~~l-~~l~~L~~L~Ls~n  197 (833)
                      .+.+. .+|..|+++++|++|||++|.+.. ..+.  .++++++|++|++++|.+.+.  +|..+ .++++|++|++++|
T Consensus        86 ~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~Ls~n  161 (768)
T 3rgz_A           86 NSHIN-GSVSGFKCSASLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLDFP--GKVSGGLKLNSLEVLDLSAN  161 (768)
T ss_dssp             TSCEE-ECCCCCCCCTTCCEEECCSSEEEE-EGGGGGGGGGCTTCCEEECCSSEEECC--SSCCSCCCCTTCSEEECCSS
T ss_pred             CCCcC-CCchhhccCCCCCEEECCCCcCCC-cCCChHHHhCCCCCCEEECcCCccCCc--CCHHHhccCCCCCEEECCCC
Confidence            99876 477889999999999999998863 2233  577777777777777776543  22233 56677777777777


Q ss_pred             CCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccc
Q 048006          198 YLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG  277 (833)
Q Consensus       198 ~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  277 (833)
                      .+++..|..+.....+++|++|++++|.+++..+.  ..+++ |++|++++|.+++.+|. ++++++|++|++++|++++
T Consensus       162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~-L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~  237 (768)
T 3rgz_A          162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVN-LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG  237 (768)
T ss_dssp             CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTT-CCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred             ccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCc-CCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC
Confidence            76665554211133336666666666666654432  44555 66666666666665554 6666666666666666666


Q ss_pred             cccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccc-cccChhhhcCCCCCCEEECcCCccccc
Q 048006          278 GIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLT-GVISESFFSNISNLKELHLANNPLVLK  356 (833)
Q Consensus       278 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~-~~i~~~~~~~l~~L~~L~L~~n~l~~~  356 (833)
                      .+|..++.+++|++|++++|++++.+|..  .++      +|++|++++|.+ +.+|...+..+++|++|++++|.+.+.
T Consensus       238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~------~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~  309 (768)
T 3rgz_A          238 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLK------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA  309 (768)
T ss_dssp             CHHHHTTTCSSCCEEECCSSCCEESCCCC--CCT------TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred             cccHHHhcCCCCCEEECCCCcccCccCcc--ccC------CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence            66666666666666666666665554432  333      555555533332 244443222235555555555555554


Q ss_pred             cCCCccCCccccEEEccCccCCCCCChh-hcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCcccc
Q 048006          357 LSHDWVPPFQLIIISLSSCKIGPHFPKW-LQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSS  435 (833)
Q Consensus       357 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~  435 (833)
                      .+..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+.....+|++|++++|++++.+|....
T Consensus       310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~  389 (768)
T 3rgz_A          310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC  389 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred             cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence            4445555555555555555554444433 445555555555555555455554444433455555555544443332210


Q ss_pred             ccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEE
Q 048006          436 RFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILN  515 (833)
Q Consensus       436 ~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  515 (833)
                      .                    ...++|+.|++++|++++.++..... +++|++|++++|.+++.+|..+..+++|++|+
T Consensus       390 ~--------------------~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  448 (768)
T 3rgz_A          390 Q--------------------NPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK  448 (768)
T ss_dssp             C--------------------STTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             h--------------------cccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence            0                    01356788888888888776654432 68999999999999999999999999999999


Q ss_pred             ccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccc
Q 048006          516 LENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH  595 (833)
Q Consensus       516 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~  595 (833)
                      +++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.++. .+++|++|++++|+++
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFS  527 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCE
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCccc
Confidence            999999999999999999999999999999999999999999999999999999999999988 6999999999999999


Q ss_pred             ccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCc-ccc-------------cceEEeeccCcchhcccc
Q 048006          596 GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDP-TIK-------------DKLMLTWKGSEREYRSTL  661 (833)
Q Consensus       596 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~  661 (833)
                      +.+|..+..+++|+.|++++|+++|.+|..+.....+........ .+.             ......+.+........+
T Consensus       528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  607 (768)
T 3rgz_A          528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL  607 (768)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred             CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence            999999999999999999999999999999888777655544321 110             001123344444445566


Q ss_pred             CcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEC
Q 048006          662 GLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDL  741 (833)
Q Consensus       662 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  741 (833)
                      +.++.++++.|.+.|.+|..++.+++|++|||++|+++|.+|..++++++|+.|+|++|+++|.+|..++++++|++||+
T Consensus       608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL  687 (768)
T 3rgz_A          608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL  687 (768)
T ss_dssp             GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence            77788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCccCCCCc-cccCccccccccCCCC
Q 048006          742 SYNNLSGKIPTV-TQLQSFNDTVYAGNPE  769 (833)
Q Consensus       742 s~N~l~g~ip~~-~~~~~l~~~~~~gn~~  769 (833)
                      ++|+++|.+|.. ..+..+..+++++|+.
T Consensus       688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          688 SSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             CSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             CCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            999999999976 6677788888888854

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.4e-61  Score=571.07  Aligned_cols=628  Identities=21%  Similarity=0.216  Sum_probs=470.6

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCccccc
Q 048006           79 ISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLS  158 (833)
Q Consensus        79 ~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~  158 (833)
                      +|..+.  +++++|+|++|.+++. .+..|+++++|++|+|++|.+.+..|..|+++++|++|++++|.+.. .....|+
T Consensus        19 ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~   94 (680)
T 1ziw_A           19 VPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFA   94 (680)
T ss_dssp             CCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred             cccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhc
Confidence            444443  6788888888888874 55678888888888888888888888888888888888888888764 3334588


Q ss_pred             CCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCccc--c
Q 048006          159 HLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLP--N  236 (833)
Q Consensus       159 ~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~--~  236 (833)
                      ++++|++|++++|.+++++  +..++++++|++|++++|.+.+..|.  .+.. +++|++|++++|.+++..+..+.  .
T Consensus        95 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~  169 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTKLG--TQVQ-LENLQELLLSNNKIQALKSEELDIFA  169 (680)
T ss_dssp             TCTTCSEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCCCC--SSSC-CTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred             cCCCCCEEECCCCccCccC--hhHccccCCCCEEECCCCcccccCch--hhcc-cccCCEEEccCCcccccCHHHhhccc
Confidence            8888888888888887752  25678888889999988888877665  3333 38888999988888877666554  3


Q ss_pred             cccCCcEEEccCccccccccccccCCCCCcEEECcCCccccccccccc---CCCCCcEEEccCCCCCchhhHHHhhcCCc
Q 048006          237 ISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFG---NMCSLITLNLSNNKLSGQLSEIIQNLSSG  313 (833)
Q Consensus       237 l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~  313 (833)
                      .++ |++|++++|.+++..|..+..+++|+.|+++++.+.......+.   ..++|++|++++|.+++..|..+..++. 
T Consensus       170 ~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~-  247 (680)
T 1ziw_A          170 NSS-LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW-  247 (680)
T ss_dssp             TCE-ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG-
T ss_pred             ccc-ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc-
Confidence            355 88889999988888888888888888898888887643322221   3478889999999888888877777650 


Q ss_pred             cccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCC-----CCCh----h
Q 048006          314 CLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGP-----HFPK----W  384 (833)
Q Consensus       314 ~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~-----~~~~----~  384 (833)
                         .+|+.|++++|.+..+++..|..+++|++|++++|.+.+..+..+..+++|++|++++|...+     .+|.    .
T Consensus       248 ---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~  324 (680)
T 1ziw_A          248 ---TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS  324 (680)
T ss_dssp             ---SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred             ---CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence               148899998777777777788889999999999999988888888889999999998875543     2332    6


Q ss_pred             hcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCce
Q 048006          385 LQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSF  464 (833)
Q Consensus       385 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~  464 (833)
                      +..+++|++|++++|.+++..+..|..+. +|++|++++|.+.+....               ...+.            
T Consensus       325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~---------------~~~f~------------  376 (680)
T 1ziw_A          325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLT---------------NETFV------------  376 (680)
T ss_dssp             TTTCTTCCEEECCSCCBCCCCTTTTTTCT-TCCEEECTTCBSCCCEEC---------------TTTTG------------
T ss_pred             cccCCCCCEEECCCCccCCCChhHhcccc-CCcEEECCCCchhhhhcc---------------hhhhc------------
Confidence            78899999999999999988777776654 788888888765422110               00000            


Q ss_pred             eecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCC-CCccCcCCccEEEcccC
Q 048006          465 LNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIP-DSMGFLQNIQTLSLHNN  543 (833)
Q Consensus       465 L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n  543 (833)
                                      ....++|+.|++++|++++..|..|..+++|++|++++|.+++.+| ..+.++++|++|++++|
T Consensus       377 ----------------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n  440 (680)
T 1ziw_A          377 ----------------SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN  440 (680)
T ss_dssp             ----------------GGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred             ----------------ccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence                            0012578999999999998888899999999999999999987666 57889999999999999


Q ss_pred             cCccccCccccCCCCCcEeccCCCccC--CCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCccc
Q 048006          544 RLTGELSSSFRNCSQLRLLDLGKNALY--GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK  621 (833)
Q Consensus       544 ~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  621 (833)
                      ++.+..+..|..+++|+.|++++|.+.  +.+|..+. .+++|++|++++|++++..+..+.++++|++|++++|++++.
T Consensus       441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~  519 (680)
T 1ziw_A          441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL  519 (680)
T ss_dssp             SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred             CcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence            999888999999999999999999986  46777766 699999999999999988788899999999999999999864


Q ss_pred             CCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCcccccc
Q 048006          622 IPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQ  701 (833)
Q Consensus       622 ~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  701 (833)
                      .+..+..                        .....+..+++|+.|+|++|+++...+..|.++++|++|+|++|++++.
T Consensus       520 ~~~~~~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  575 (680)
T 1ziw_A          520 WKHANPG------------------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL  575 (680)
T ss_dssp             GSTTSTT------------------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             chhhccC------------------------CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcC
Confidence            3322110                        0001123445669999999999954455789999999999999999987


Q ss_pred             CCcccCCCCCCCEEeCCCCcCcccCCcccc-CCCCCCEEECcCCcCccCCCC-ccccCccccccccCCCCCCCCCCCCCC
Q 048006          702 ISPKIGQLKSLDFLDLSRNQLVGGIPSSLS-QLSGLSVMDLSYNNLSGKIPT-VTQLQSFNDTVYAGNPELCGLPLPNKC  779 (833)
Q Consensus       702 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~-~~~~~~l~~~~~~gn~~lc~~~~~~~c  779 (833)
                      .+..|..+++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.++. .+...++...    +...-+......|
T Consensus       576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~----~~~~~~~~~~~~C  651 (680)
T 1ziw_A          576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET----HTNIPELSSHYLC  651 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-----------------
T ss_pred             CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhc----CcccccccCCcEE
Confidence            777789999999999999999988888777 788999999999999999885 3322333221    1111111123468


Q ss_pred             CCCCCCCCCCCccC
Q 048006          780 RDEESAAGPGITEG  793 (833)
Q Consensus       780 ~~~~~~~~~~~~~~  793 (833)
                      ..|+..+|..+.+.
T Consensus       652 ~~p~~~~g~~l~~~  665 (680)
T 1ziw_A          652 NTPPHYHGFPVRLF  665 (680)
T ss_dssp             --------------
T ss_pred             CCchHHCCCccccc
Confidence            87777777555433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2e-59  Score=552.76  Aligned_cols=597  Identities=23%  Similarity=0.238  Sum_probs=435.1

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecC
Q 048006           90 RHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLD  169 (833)
Q Consensus        90 ~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  169 (833)
                      +.++.++++++  .+|..+.  +++++|+|++|.+.+..+..|.++++|++|++++|.+.. ..+..++++++|++|+++
T Consensus         7 ~~~~cs~~~L~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            7 EVADCSHLKLT--QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             SEEECCSSCCS--SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECC
T ss_pred             CeeECCCCCcc--ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECC
Confidence            56888888888  4777665  799999999999998777889999999999999999875 445678999999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCc
Q 048006          170 ESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFN  249 (833)
Q Consensus       170 ~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n  249 (833)
                      +|.++.++.  ..++++++|++|++++|.+.+..|.  .+.. +++|++|++++|.+++..+..+.++++ |++|++++|
T Consensus        82 ~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n  155 (680)
T 1ziw_A           82 HNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNN--PFVK-QKNLITLDLSHNGLSSTKLGTQVQLEN-LQELLLSNN  155 (680)
T ss_dssp             SSCCCCCCT--TTTTTCTTCSEEECCSSCCCCCCSC--TTTT-CTTCCEEECCSSCCSCCCCCSSSCCTT-CCEEECCSS
T ss_pred             CCccCccCh--hhhccCCCCCEEECCCCccCccChh--Hccc-cCCCCEEECCCCcccccCchhhccccc-CCEEEccCC
Confidence            999987532  3588999999999999999877665  3333 389999999999999888888888888 999999999


Q ss_pred             ccccccccccc--CCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhh---cCCccccCCccEEEc
Q 048006          250 QLQGSIPESFQ--HMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQN---LSSGCLENSLKSLYL  324 (833)
Q Consensus       250 ~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~---l~~~~~~~~L~~L~L  324 (833)
                      .+++..+..+.  .+++|++|++++|++++..|..+..+++|+.|+++++.+.+.....+..   .+      +|+.|++
T Consensus       156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~------~L~~L~L  229 (680)
T 1ziw_A          156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT------SIRNLSL  229 (680)
T ss_dssp             CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS------CCCEEEC
T ss_pred             cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc------cccEEEc
Confidence            99887777654  5688999999999999888888999999999999988876544332221   12      4555555


Q ss_pred             ccccccccChhhhcCCCC--CCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccc
Q 048006          325 ENSLTGVISESFFSNISN--LKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGIS  402 (833)
Q Consensus       325 ~~~~~~~i~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~  402 (833)
                      +++.+..+++..|.+++.  |++|++++|.+.+                        ..|.++..+++|++|++++|.++
T Consensus       230 ~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~------------------------~~~~~~~~l~~L~~L~L~~n~l~  285 (680)
T 1ziw_A          230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV------------------------VGNDSFAWLPQLEYFFLEYNNIQ  285 (680)
T ss_dssp             TTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE------------------------ECTTTTTTCTTCCEEECCSCCBS
T ss_pred             cCCcccccChhHhhccCcCCCCEEECCCCCcCc------------------------cCcccccCcccccEeeCCCCccC
Confidence            444444444434444432  5555555555444                        44444455555555555555555


Q ss_pred             cccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccc
Q 048006          403 DTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSI  482 (833)
Q Consensus       403 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  482 (833)
                      +..|..+.... +|++|++++|...+.++..      .+..  +.     ......+++|+.|++++|++.+..+... .
T Consensus       286 ~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~------~lp~--i~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~  350 (680)
T 1ziw_A          286 HLFSHSLHGLF-NVRYLNLKRSFTKQSISLA------SLPK--ID-----DFSFQWLKCLEHLNMEDNDIPGIKSNMF-T  350 (680)
T ss_dssp             EECTTTTTTCT-TCCEEECTTCBCCC------------CCE--EC-----TTTTTTCTTCCEEECCSCCBCCCCTTTT-T
T ss_pred             ccChhhhcCCC-CccEEeccchhhhcccccc------cccc--cC-----hhhcccCCCCCEEECCCCccCCCChhHh-c
Confidence            44444444332 4555555544333221100      0000  00     0000112344555555555544333221 1


Q ss_pred             cCCcccEEEcCCCcCcCC--CCCcccCC--CCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccC-ccccCCC
Q 048006          483 SGSKLTYVDLSSNLLSGK--LPDCWWTF--DSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELS-SSFRNCS  557 (833)
Q Consensus       483 ~~~~L~~L~ls~n~l~~~--~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~  557 (833)
                      .+++|++|++++|.+...  .+..|..+  ++|+.|++++|++++..|..|..+++|++|++++|.+++.+| ..|.+++
T Consensus       351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~  430 (680)
T 1ziw_A          351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE  430 (680)
T ss_dssp             TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT
T ss_pred             cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc
Confidence            257788888888865432  22333332  578899999999888888888888899999999998887665 6788888


Q ss_pred             CCcEeccCCCccCCCCCcchhhcCCccceEEecCCccc--ccccccccCCCCCCEEeccCCcCcccCCcccccccccccc
Q 048006          558 QLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH--GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE  635 (833)
Q Consensus       558 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  635 (833)
                      +|++|++++|++.+..+..+. .+++|++|++++|.+.  +.+|..+..+++|+.|++++|++++..|..|..+++|   
T Consensus       431 ~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L---  506 (680)
T 1ziw_A          431 NIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL---  506 (680)
T ss_dssp             TCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---
T ss_pred             cccEEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc---
Confidence            899999999988744444444 6888999999988876  5678888888899999999998887777777776666   


Q ss_pred             CCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCC--------chhhhcccCCcEEECCCccccccCCcccC
Q 048006          636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAV--------PEEIMDLVGLVALNLSKNHLTGQISPKIG  707 (833)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  707 (833)
                                                   +.|++++|++++..        +..+.++++|++|+|++|+++...+..|.
T Consensus       507 -----------------------------~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~  557 (680)
T 1ziw_A          507 -----------------------------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK  557 (680)
T ss_dssp             -----------------------------CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             -----------------------------CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence                                         99999999998542        22478999999999999999965556799


Q ss_pred             CCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc-c-ccCccccccccCCCCCCCCCC
Q 048006          708 QLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-T-QLQSFNDTVYAGNPELCGLPL  775 (833)
Q Consensus       708 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~-~~~~l~~~~~~gn~~lc~~~~  775 (833)
                      ++++|+.|+|++|++++..+..|..+++|+.|++++|++++.+|.. . .+..+..+++.||||.|+|+.
T Consensus       558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            9999999999999999888888899999999999999999887754 2 567888899999999999874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.1e-57  Score=523.35  Aligned_cols=571  Identities=21%  Similarity=0.216  Sum_probs=390.2

Q ss_pred             EEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCcccccee
Q 048006           62 LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL  141 (833)
Q Consensus        62 ~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  141 (833)
                      .++.++     ..++ .+|..+..  ++++|+|++|.+++. .|..|+++++|++|+|++|.+.+..|.+|+++++|++|
T Consensus        16 ~~~c~~-----~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   86 (606)
T 3t6q_A           16 TYNCEN-----LGLN-EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL   86 (606)
T ss_dssp             EEECTT-----SCCS-SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             eEECCC-----CCcc-cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCee
Confidence            356665     3333 45555543  689999999999875 67889999999999999999988888899999999999


Q ss_pred             cccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEc
Q 048006          142 DLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVL  221 (833)
Q Consensus       142 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~L  221 (833)
                      ++++|.+.. ..+..++++++|++|++++|.+++..  +..++++++|++|++++|.+.+                    
T Consensus        87 ~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~l~--~~~~~~l~~L~~L~L~~n~l~~--------------------  143 (606)
T 3t6q_A           87 VLTANPLIF-MAETALSGPKALKHLFFIQTGISSID--FIPLHNQKTLESLYLGSNHISS--------------------  143 (606)
T ss_dssp             ECTTCCCSE-ECTTTTSSCTTCCEEECTTSCCSCGG--GSCCTTCTTCCEEECCSSCCCC--------------------
T ss_pred             eCCCCcccc-cChhhhcccccccEeeccccCcccCC--cchhccCCcccEEECCCCcccc--------------------
Confidence            999998764 33445667777777777777666532  2234555555555555555444                    


Q ss_pred             cCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCc--EEECcCCcccccccccccCCCCCcEEEccCCCC
Q 048006          222 SDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLE--HLRLSFNELEGGIPKFFGNMCSLITLNLSNNKL  299 (833)
Q Consensus       222 s~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  299 (833)
                             ..++.+..+++ |++|++++|.+++..|..|+.+++|+  +|++++|.+++..|..+.. .+|++|++++|. 
T Consensus       144 -------~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~-  213 (606)
T 3t6q_A          144 -------IKLPKGFPTEK-LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ-  213 (606)
T ss_dssp             -------CCCCTTCCCTT-CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS-
T ss_pred             -------cCcccccCCcc-cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch-
Confidence                   22222223444 66666666666666666777777777  7788888877766665543 578888888776 


Q ss_pred             CchhhHHHhhcCCccccCCcc--EEEc---ccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccC
Q 048006          300 SGQLSEIIQNLSSGCLENSLK--SLYL---ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSS  374 (833)
Q Consensus       300 ~~~~~~~l~~l~~~~~~~~L~--~L~L---~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  374 (833)
                        ..+..+..+.      .+.  .+.+   .+.....++...|..+.                      ..+|+.|++++
T Consensus       214 --~~~~~~~~l~------~~~l~~l~~~~~~~~~~~~i~~~~~~~l~----------------------~~~L~~L~l~~  263 (606)
T 3t6q_A          214 --NLLVIFKGLK------NSTIQSLWLGTFEDMDDEDISPAVFEGLC----------------------EMSVESINLQK  263 (606)
T ss_dssp             --CHHHHHHHTT------TCEEEEEECCCCTTSCCCCCCGGGGGGGG----------------------GSEEEEEECTT
T ss_pred             --hHHHHhhhcc------ccchhheechhhccccccccChhHhchhh----------------------cCceeEEEeec
Confidence              3445555554      333  2322   11112223333333322                      01344444444


Q ss_pred             ccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCccccc
Q 048006          375 CKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGL  454 (833)
Q Consensus       375 ~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~  454 (833)
                      |.+++..+..+..+++|++|++++|.++ .+|..+..+ ++|++|++++|.+.+..|..                     
T Consensus       264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~---------------------  320 (606)
T 3t6q_A          264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL-STLKKLVLSANKFENLCQIS---------------------  320 (606)
T ss_dssp             CCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSC-TTCCEEECTTCCCSBGGGGC---------------------
T ss_pred             CccCccCHHHhccccCCCEEeccCCccC-CCChhhccc-ccCCEEECccCCcCcCchhh---------------------
Confidence            4444444444555555555555555554 333333222 23444444444433222211                     


Q ss_pred             CCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCC-cccCCCCCcEEEccCCcccccC--CCCccC
Q 048006          455 IPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPD-CWWTFDSLVILNLENNSFSGRI--PDSMGF  531 (833)
Q Consensus       455 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~  531 (833)
                                                ...+++|++|++++|.+.+.++. .+..+++|++|++++|.+++..  +..+..
T Consensus       321 --------------------------~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  374 (606)
T 3t6q_A          321 --------------------------ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN  374 (606)
T ss_dssp             --------------------------GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred             --------------------------hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc
Confidence                                      00136677777777777655544 4778888888888888888765  777888


Q ss_pred             cCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEE
Q 048006          532 LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVL  611 (833)
Q Consensus       532 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L  611 (833)
                      +++|++|++++|++.+..|..|..+++|++|++++|++.+..|...+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus       375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  454 (606)
T 3t6q_A          375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL  454 (606)
T ss_dssp             CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence            89999999999999888888899999999999999998877666645578999999999999998888889999999999


Q ss_pred             eccCCcCccc---CCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCC
Q 048006          612 DLSLNNISGK---IPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGL  688 (833)
Q Consensus       612 ~Ls~N~l~~~---~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L  688 (833)
                      ++++|++.+.   .+..+..+++|                                +.|++++|++++..|..|..+++|
T Consensus       455 ~L~~n~l~~~~~~~~~~~~~l~~L--------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L  502 (606)
T 3t6q_A          455 NLQGNHFPKGNIQKTNSLQTLGRL--------------------------------EILVLSFCDLSSIDQHAFTSLKMM  502 (606)
T ss_dssp             ECTTCBCGGGEECSSCGGGGCTTC--------------------------------CEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ECCCCCCCccccccchhhccCCCc--------------------------------cEEECCCCccCccChhhhccccCC
Confidence            9999999763   22345554444                                999999999998889999999999


Q ss_pred             cEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCC
Q 048006          689 VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNP  768 (833)
Q Consensus       689 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~  768 (833)
                      ++|+|++|++++.+|..+.++++| .|++++|++++.+|..+..+++|++|++++|++.|.++......++....     
T Consensus       503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~-----  576 (606)
T 3t6q_A          503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENM-----  576 (606)
T ss_dssp             CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCG-----
T ss_pred             CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCc-----
Confidence            999999999999999999999999 99999999999999999999999999999999999888654333332110     


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCc
Q 048006          769 ELCGLPLPNKCRDEESAAGPGIT  791 (833)
Q Consensus       769 ~lc~~~~~~~c~~~~~~~~~~~~  791 (833)
                      ..-.......|..|...++.++.
T Consensus       577 ~~~~~~~~~~C~~p~~~~g~~l~  599 (606)
T 3t6q_A          577 QKLEDTEDTLCENPPLLRGVRLS  599 (606)
T ss_dssp             GGEECGGGCBEEESGGGTTCBGG
T ss_pred             ccccCCCCCeeCCchHhCCCeee
Confidence            00000112467777666665554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-56  Score=535.85  Aligned_cols=560  Identities=22%  Similarity=0.256  Sum_probs=361.6

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCC-CcccCCccccceecccCccCCCCCCcccccCCCCC
Q 048006           85 KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPI-PPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYL  163 (833)
Q Consensus        85 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L  163 (833)
                      -.+++++|||++|.+++. .|..|..+++|++|+|++|.+.+.+ |.+|.++++|++|+|++|.+.. ..+..++++++|
T Consensus        22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L   99 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHL   99 (844)
T ss_dssp             SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTSSCSCSSC
T ss_pred             CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhHccCCccc
Confidence            346788888888888764 6777888888888888888665555 6778888888888888887754 345567777777


Q ss_pred             cEEecCCCCCCCCchhHH--hhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCccccc--cc
Q 048006          164 RYLNLDESNLANSSDWFQ--VIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNI--SS  239 (833)
Q Consensus       164 ~~L~Ls~n~~~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l--~~  239 (833)
                      ++|+|++|.+++.  ++.  .++++++|++|+|++|.+.+..+.  ..+..+++|++|++++|.+++..+..+..+  ++
T Consensus       100 ~~L~Ls~n~l~~~--~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~  175 (844)
T 3j0a_A          100 FELRLYFCGLSDA--VLKDGYFRNLKALTRLDLSKNQIRSLYLH--PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT  175 (844)
T ss_dssp             CCEECTTCCCSSC--CSTTCCCSSCSSCCEEEEESCCCCCCCCC--GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred             CEeeCcCCCCCcc--cccCccccccCCCCEEECCCCcccccccc--hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence            7777777777652  222  266677777777777766665442  222333666666666666666666665554  44


Q ss_pred             CCcEEEccCccccccccccccCCCC------CcEEECcCCcccccccccccCC---CCCcEEEccCCCCCchhhHHHhhc
Q 048006          240 IFISIDLGFNQLQGSIPESFQHMVY------LEHLRLSFNELEGGIPKFFGNM---CSLITLNLSNNKLSGQLSEIIQNL  310 (833)
Q Consensus       240 ~L~~L~Ls~n~l~~~~p~~~~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~~~~l~~l  310 (833)
                       |+.|+++.|.+.+..|..++.+++      |++|++++|.+++..+..+...   ++++.+.++.+.....        
T Consensus       176 -L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~--------  246 (844)
T 3j0a_A          176 -LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG--------  246 (844)
T ss_dssp             -SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------
T ss_pred             -cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc--------
Confidence             666666666666655555544443      5555555555555444444321   3444444443221110        


Q ss_pred             CCccccCCccEEEcccccccccChhhhcCC--CCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhccc
Q 048006          311 SSGCLENSLKSLYLENSLTGVISESFFSNI--SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQ  388 (833)
Q Consensus       311 ~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l  388 (833)
                                   ...+.+..+....|..+  ++|++|++++|.+.+                        ..+..+..+
T Consensus       247 -------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~------------------------~~~~~~~~l  289 (844)
T 3j0a_A          247 -------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS------------------------LNSRVFETL  289 (844)
T ss_dssp             -------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE------------------------ECSCCSSSC
T ss_pred             -------------ccccccCCCChhhhhccccCCccEEECCCCcccc------------------------cChhhhhcC
Confidence                         00111111222223332  345555555555444                        444445555


Q ss_pred             ccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecC
Q 048006          389 NQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLS  468 (833)
Q Consensus       389 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~  468 (833)
                      ++|+.|++++|++++..|..|..+. +|++|++++|.+++..|..                                   
T Consensus       290 ~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~-----------------------------------  333 (844)
T 3j0a_A          290 KDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSN-----------------------------------  333 (844)
T ss_dssp             CCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCS-----------------------------------
T ss_pred             CCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHH-----------------------------------
Confidence            5555555555555544444443332 4444544444444322211                                   


Q ss_pred             CCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccc
Q 048006          469 KNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGE  548 (833)
Q Consensus       469 ~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  548 (833)
                                  +..+++|++|++++|.+.+..+..|..+++|++|++++|.+++.     ..+++|+.|++++|+++ .
T Consensus       334 ------------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~  395 (844)
T 3j0a_A          334 ------------FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-T  395 (844)
T ss_dssp             ------------CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-C
T ss_pred             ------------hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-c
Confidence                        00136778888888888777777788888888888888888742     23678888888888887 3


Q ss_pred             cCccccCCCCCcEeccCCCccCCCCCc-chhhcCCccceEEecCCcccccccc-cccCCCCCCEEeccCCcCcccC----
Q 048006          549 LSSSFRNCSQLRLLDLGKNALYGEIPT-WMGESLSNLIVLSLKSNKFHGKIPF-QLCQLAFLQVLDLSLNNISGKI----  622 (833)
Q Consensus       549 ~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~----  622 (833)
                      +|..   ..+++.|++++|++.+ ++. .....+++|++|++++|++++..+. .+..+++|+.|++++|.+++..    
T Consensus       396 l~~~---~~~l~~L~ls~N~l~~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~  471 (844)
T 3j0a_A          396 LPKI---NLTANLIHLSENRLEN-LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL  471 (844)
T ss_dssp             CCCC---CTTCCEEECCSCCCCS-STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC
T ss_pred             cccc---ccccceeecccCcccc-CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccccc
Confidence            4432   4578888888888873 332 2223588888999999888855433 3556788999999999887332    


Q ss_pred             -CccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCcccccc
Q 048006          623 -PKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQ  701 (833)
Q Consensus       623 -p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  701 (833)
                       +..|..+                                ++|+.|+|++|++++..|..|..+++|++|+|++|++++.
T Consensus       472 ~~~~~~~l--------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l  519 (844)
T 3j0a_A          472 CWDVFEGL--------------------------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL  519 (844)
T ss_dssp             CSSCSSCB--------------------------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred             chhhhcCc--------------------------------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence             3334443                                4458899999999988888889999999999999999987


Q ss_pred             CCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCCCCCCC
Q 048006          702 ISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRD  781 (833)
Q Consensus       702 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c~~  781 (833)
                      .|..+.  ++|+.|+|++|++++.+|..+.   +|+.|++++|++.|.++...    |......++..+||.+....|..
T Consensus       520 ~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~----f~~~~~~~~~~~~~~~~~~~C~~  590 (844)
T 3j0a_A          520 SHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELST----FINWLNHTNVTIAGPPADIYCVY  590 (844)
T ss_dssp             CCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCS----HHHHHHHTTTTTCCCGGGCCCSS
T ss_pred             Chhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccHH----HHHHHHhcCcccccccccCccCC
Confidence            777666  8899999999999998887764   68899999999999887543    22222345667777777778998


Q ss_pred             CCCCCCCCCccCCC
Q 048006          782 EESAAGPGITEGRD  795 (833)
Q Consensus       782 ~~~~~~~~~~~~~~  795 (833)
                      |...++.+..+...
T Consensus       591 p~~~~g~~l~~~~~  604 (844)
T 3j0a_A          591 PDSFSGVSLFSLST  604 (844)
T ss_dssp             CSSSCSCCTTTCCC
T ss_pred             chhhCCCccccCcc
Confidence            88877766554433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.5e-56  Score=519.80  Aligned_cols=511  Identities=17%  Similarity=0.234  Sum_probs=293.3

Q ss_pred             CCHHHHHHHHHhhhcCcCCCC--------CCCCCCCCCCCCCCCcc---cceEecCCCCcEEEEECCCCCCCCCCcceec
Q 048006           11 CIDEEREALLTFKASLVDESG--------VLSSWGPEDEKRDCCKW---TGLRCSNKTNHVILLDLQPIDFDSFPLRGTI   79 (833)
Q Consensus        11 ~~~~~~~~ll~~k~~~~~~~~--------~~~~w~~~~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~   79 (833)
                      ....|+.||.++|+++.++..        ..++|.   .+++||.|   .||+|+.. |||++|+|++     +.++|.+
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~-----~~l~g~l   97 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG-----FGASGRV   97 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT-----SCCEEEE
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC-----cccCCcC
Confidence            345799999999999864432        345797   47899999   99999854 8999999999     7899999


Q ss_pred             CccccCCCCCCEEeCCCCCCCCC-----------CccccccCCCCCCEEEccCCCCCCCCCcccCC-ccccceecccCcc
Q 048006           80 SPALLKLHDLRHLNLSFNDFSGS-----------PIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGN-LSRLQHLDLGSNY  147 (833)
Q Consensus        80 ~~~l~~l~~L~~L~Ls~n~~~~~-----------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~n~  147 (833)
                      |++++++++|++|+|++|.+...           .+|...  +.+|+ +++++|.+.+.+|..+.. +.++..+++....
T Consensus        98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~  174 (636)
T 4eco_A           98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS  174 (636)
T ss_dssp             CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred             ChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence            99999999999999999976311           122222  23334 444444444444433331 1222222222111


Q ss_pred             CCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEc--cCCc
Q 048006          148 LFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVL--SDNN  225 (833)
Q Consensus       148 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~L--s~n~  225 (833)
                      +.                         .                          .        .. ..++.+.+  ..|+
T Consensus       175 ~~-------------------------~--------------------------~--------~~-~~l~~l~l~~~~n~  194 (636)
T 4eco_A          175 IK-------------------------K--------------------------S--------SR-ITLKDTQIGQLSNN  194 (636)
T ss_dssp             CC-------------------------C--------------------------C--------CC-CCCCTTTTTCCSCE
T ss_pred             cc-------------------------c--------------------------c--------cc-cchhhhhhccccCC
Confidence            10                         0                          0        00 11111111  2456


Q ss_pred             CCCCCCCcccccccCCcEEEccCcccccc-----------------cccccc--CCCCCcEEECcCCcccccccccccCC
Q 048006          226 LTSSIYPWLPNISSIFISIDLGFNQLQGS-----------------IPESFQ--HMVYLEHLRLSFNELEGGIPKFFGNM  286 (833)
Q Consensus       226 l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l  286 (833)
                      +++ +|+.++++++ |++|+|++|.+++.                 +|+.++  ++++|++|++++|++.+.+|..|+++
T Consensus       195 l~~-ip~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          195 ITF-VSKAVMRLTK-LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             EEE-ECGGGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             Ccc-CCHHHhcccC-CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            666 6666777776 77777777777764                 888888  99999999999999999999999999


Q ss_pred             CCCcEEEccCCC-CCc-hhhHHHhhcCCccccCCccEEEcccccccccCh-hhhcCCCCCCEEECcCCccccccCCCccC
Q 048006          287 CSLITLNLSNNK-LSG-QLSEIIQNLSSGCLENSLKSLYLENSLTGVISE-SFFSNISNLKELHLANNPLVLKLSHDWVP  363 (833)
Q Consensus       287 ~~L~~L~Ls~n~-l~~-~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  363 (833)
                      ++|++|++++|+ +++ .+|..++.+.......+|++|++++|.+..+|. ..|.++++|++|++++|.+.+        
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g--------  344 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG--------  344 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE--------
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc--------
Confidence            999999999998 888 888888776200000044444443333333333 123344444444444443332        


Q ss_pred             CccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCc
Q 048006          364 PFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPG  443 (833)
Q Consensus       364 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~  443 (833)
                                      .+| .+..+++|++|++++|+++ .+|..+..+                               
T Consensus       345 ----------------~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l-------------------------------  375 (636)
T 4eco_A          345 ----------------KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGF-------------------------------  375 (636)
T ss_dssp             ----------------ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEE-------------------------------
T ss_pred             ----------------chh-hhCCCCCCCEEECCCCccc-cccHhhhhh-------------------------------
Confidence                            223 3333333444444443333 222222111                               


Q ss_pred             eecccCcccccCCCCCCCCceeecCCCcccccccccccccCCc-ccEEEcCCCcCcCCCCCcccCCC--CCcEEEccCCc
Q 048006          444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSK-LTYVDLSSNLLSGKLPDCWWTFD--SLVILNLENNS  520 (833)
Q Consensus       444 l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~  520 (833)
                                                               ++ |++|++++|.++ .+|..+..++  +|++|++++|.
T Consensus       376 -----------------------------------------~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          376 -----------------------------------------TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred             -----------------------------------------cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc
Confidence                                                     22 444444444444 3333333322  44444444444


Q ss_pred             ccccCCCCcc-------CcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCc
Q 048006          521 FSGRIPDSMG-------FLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNK  593 (833)
Q Consensus       521 l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~  593 (833)
                      +++.+|..+.       .+++|++|++++|+++...+..+..+++|++|++++|+++ .+|...+....           
T Consensus       414 l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-----------  481 (636)
T 4eco_A          414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-----------  481 (636)
T ss_dssp             TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-----------
T ss_pred             CCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-----------
Confidence            4444444444       4445555555555555333333444555666666666655 55554432211           


Q ss_pred             ccccccccccCCCCCCEEeccCCcCcccCCcccc--ccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccC
Q 048006          594 FHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN--NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN  671 (833)
Q Consensus       594 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  671 (833)
                            ..+.++++|+.|++++|+++ .+|..+.  .+++|                                +.|+|++
T Consensus       482 ------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L--------------------------------~~L~Ls~  522 (636)
T 4eco_A          482 ------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL--------------------------------VGIDLSY  522 (636)
T ss_dssp             ------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC--------------------------------CEEECCS
T ss_pred             ------ccccccCCccEEECcCCcCC-ccChhhhhccCCCc--------------------------------CEEECCC
Confidence                  00111224444444444444 3333332  33322                                4455555


Q ss_pred             CcCCCCCchhhhcccCCcEEEC------CCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCc
Q 048006          672 NNLNGAVPEEIMDLVGLVALNL------SKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNN  745 (833)
Q Consensus       672 n~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  745 (833)
                      |++++ +|..+..+++|++|+|      ++|++.+.+|..+.++++|++|+|++|++ +.+|..+.  ++|+.||+++|+
T Consensus       523 N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~  598 (636)
T 4eco_A          523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP  598 (636)
T ss_dssp             SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred             CCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence            55543 4445555555555555      66778888888888888888888888888 57777765  788999999998


Q ss_pred             CccC
Q 048006          746 LSGK  749 (833)
Q Consensus       746 l~g~  749 (833)
                      +...
T Consensus       599 l~~~  602 (636)
T 4eco_A          599 NISI  602 (636)
T ss_dssp             TCEE
T ss_pred             Cccc
Confidence            7653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.1e-54  Score=503.00  Aligned_cols=570  Identities=21%  Similarity=0.161  Sum_probs=368.8

Q ss_pred             EEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCcccccee
Q 048006           62 LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL  141 (833)
Q Consensus        62 ~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  141 (833)
                      .++.++     ..++ .+|..+.  +++++|+|++|.+++. .+..|.++++|++|+|++|.+.+..|..|.++++|++|
T Consensus        15 ~~~c~~-----~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L   85 (606)
T 3vq2_A           15 TYQCMD-----QKLS-KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL   85 (606)
T ss_dssp             EEECTT-----SCCS-SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ceEccC-----CCcc-cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence            356666     3443 3444443  6888999999988864 55688888999999999998887778888888888888


Q ss_pred             cccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCC-CCCccccccccCCCCCEEE
Q 048006          142 DLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPP-VIPLSLNHLNSSTSLETLV  220 (833)
Q Consensus       142 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L~  220 (833)
                      +|++|.+.. ..+..++++++|++|++++|.+++.+.  ..++++++|++|++++|.+.+ .+|.  .+... ++|++|+
T Consensus        86 ~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~lp~--~~~~l-~~L~~L~  159 (606)
T 3vq2_A           86 ILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPA--YFSNL-TNLVHVD  159 (606)
T ss_dssp             ECTTCCCCC-CCTTSSTTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCCCCCG--GGGTC-TTCCEEE
T ss_pred             ECCCCcccc-cChhhcCCcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCcccceechH--hHhhc-CCCCEEE
Confidence            888888764 334566777777777777777665421  235556666666666665544 2343  22222 5555555


Q ss_pred             ccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCC
Q 048006          221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLS  300 (833)
Q Consensus       221 Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  300 (833)
                      +++|++++..+..+..+.+ ++.                    .+++|++++|.+++..+..+... +|++|++++|.++
T Consensus       160 Ls~n~l~~~~~~~~~~l~~-L~~--------------------~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~  217 (606)
T 3vq2_A          160 LSYNYIQTITVNDLQFLRE-NPQ--------------------VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNS  217 (606)
T ss_dssp             CCSSCCCEECTTTTHHHHH-CTT--------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSC
T ss_pred             ccCCcceecChhhhhhhhc-ccc--------------------ccceeeccCCCcceeCcccccCc-eeeeeeccCCccc
Confidence            5555554444444433332 210                    02255555555554433333333 5666666666554


Q ss_pred             -chhhHHHhhcCCccccCCccEEEcccccc------cccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEc-
Q 048006          301 -GQLSEIIQNLSSGCLENSLKSLYLENSLT------GVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISL-  372 (833)
Q Consensus       301 -~~~~~~l~~l~~~~~~~~L~~L~L~~~~~------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L-  372 (833)
                       +..|..+.+++      .++.+++..+..      ..++...+..+..                     . .++.+++ 
T Consensus       218 ~~~~~~~~~~l~------~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~---------------------l-~l~~l~l~  269 (606)
T 3vq2_A          218 SNIMKTCLQNLA------GLHVHRLILGEFKDERNLEIFEPSIMEGLCD---------------------V-TIDEFRLT  269 (606)
T ss_dssp             HHHHHHHHHTTT------TCEEEEEEEECCTTSCCCSCCCGGGGTTGGG---------------------S-EEEEEEEC
T ss_pred             hhHHHHHhcccc------ccccccccccccccCCcccccChHHhhhhhh---------------------c-cHhheecc
Confidence             34445555555      455544411111      1111111111111                     1 3444444 


Q ss_pred             cCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCccc
Q 048006          373 SSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFE  452 (833)
Q Consensus       373 ~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~  452 (833)
                      ..+.+.+..|. +..+++|+.|++++|.+.. +| .+... ++|++|++++|.+ +.+|..                   
T Consensus       270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~-~~L~~L~l~~n~l-~~lp~~-------------------  325 (606)
T 3vq2_A          270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKH-FKWQSLSIIRCQL-KQFPTL-------------------  325 (606)
T ss_dssp             CCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTT-CCCSEEEEESCCC-SSCCCC-------------------
T ss_pred             ccccccccccc-cccCCCCCEEEecCccchh-hh-hcccc-ccCCEEEcccccC-cccccC-------------------
Confidence            34445545554 6666667777777666643 22 22222 2445555555444 222211                   


Q ss_pred             ccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCccccc--CCCCcc
Q 048006          453 GLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR--IPDSMG  530 (833)
Q Consensus       453 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~  530 (833)
                                                    .+++|++|++++|...+..  .+..+++|++|++++|.+++.  .+..+.
T Consensus       326 ------------------------------~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  373 (606)
T 3vq2_A          326 ------------------------------DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL  373 (606)
T ss_dssp             ------------------------------CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred             ------------------------------CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhc
Confidence                                          1366777777777544333  456778888888888888765  366778


Q ss_pred             CcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCE
Q 048006          531 FLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQV  610 (833)
Q Consensus       531 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~  610 (833)
                      .+++|++|++++|.+++ +|..+..+++|++|++++|++.+..|...+..+++|++|++++|.+.+..|..+..+++|++
T Consensus       374 ~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  452 (606)
T 3vq2_A          374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT  452 (606)
T ss_dssp             CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence            88888888888888875 55778888899999999998886666333446889999999999998888888999999999


Q ss_pred             EeccCCcCcc-cCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCc
Q 048006          611 LDLSLNNISG-KIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLV  689 (833)
Q Consensus       611 L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  689 (833)
                      |++++|++.+ .+|..|..+++|                                +.|++++|++++..|..+..+++|+
T Consensus       453 L~l~~n~l~~~~~~~~~~~l~~L--------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~  500 (606)
T 3vq2_A          453 LKMAGNSFKDNTLSNVFANTTNL--------------------------------TFLDLSKCQLEQISWGVFDTLHRLQ  500 (606)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTC--------------------------------CEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             EECCCCcCCCcchHHhhccCCCC--------------------------------CEEECCCCcCCccChhhhcccccCC
Confidence            9999999987 467777777666                                8999999999988899999999999


Q ss_pred             EEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCC-CCCEEECcCCcCccCCCCccccCccccccccCCC
Q 048006          690 ALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLS-GLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNP  768 (833)
Q Consensus       690 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~  768 (833)
                      +|+|++|++++.+|..|.++++|+.|+|++|+++ .+|..+..++ +|++|++++|++.|.++..+...++..     ++
T Consensus       501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~-----~~  574 (606)
T 3vq2_A          501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE-----QK  574 (606)
T ss_dssp             EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT-----SS
T ss_pred             EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc-----Cc
Confidence            9999999999999999999999999999999999 6777788887 699999999999999887544444432     21


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCc
Q 048006          769 ELCGLPLPNKCRDEESAAGPGIT  791 (833)
Q Consensus       769 ~lc~~~~~~~c~~~~~~~~~~~~  791 (833)
                      ..........|..|+..++....
T Consensus       575 ~~~~~~~~~~C~~p~~~~~~~l~  597 (606)
T 3vq2_A          575 QFLVNVEQMTCATPVEMNTSLVL  597 (606)
T ss_dssp             SSBSSGGGCCCC-----------
T ss_pred             ccccCCccceeCCChHhCCCEee
Confidence            22211223578877777665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.9e-54  Score=498.18  Aligned_cols=538  Identities=20%  Similarity=0.198  Sum_probs=399.6

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecC
Q 048006           90 RHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLD  169 (833)
Q Consensus        90 ~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  169 (833)
                      +.++.++..++  .+|..+.  .++++|+|++|.+++..|..|+++++|++|++++|.+.. ..+..|+++++|++|+++
T Consensus        15 ~~~~c~~~~l~--~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls   89 (606)
T 3t6q_A           15 KTYNCENLGLN--EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLT   89 (606)
T ss_dssp             TEEECTTSCCS--SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred             ceEECCCCCcc--cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCC
Confidence            46888888887  4777665  478999999999988778888888888888888887753 223334444444444444


Q ss_pred             CCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCc
Q 048006          170 ESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFN  249 (833)
Q Consensus       170 ~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n  249 (833)
                      +|.+                          .+..|.  .+.. +++|++|++++|++++..+..+..+++ |++|++++|
T Consensus        90 ~n~l--------------------------~~~~~~--~~~~-l~~L~~L~L~~n~i~~l~~~~~~~l~~-L~~L~L~~n  139 (606)
T 3t6q_A           90 ANPL--------------------------IFMAET--ALSG-PKALKHLFFIQTGISSIDFIPLHNQKT-LESLYLGSN  139 (606)
T ss_dssp             TCCC--------------------------SEECTT--TTSS-CTTCCEEECTTSCCSCGGGSCCTTCTT-CCEEECCSS
T ss_pred             CCcc--------------------------cccChh--hhcc-cccccEeeccccCcccCCcchhccCCc-ccEEECCCC
Confidence            4444                          333332  1122 255555555555555444444555556 777777777


Q ss_pred             cccccccccccCCCCCcEEECcCCcccccccccccCCCCCc--EEEccCCCCCchhhHHHhhcCCccccCCccEEEcccc
Q 048006          250 QLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLI--TLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENS  327 (833)
Q Consensus       250 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~  327 (833)
                      .+++..+..+..+++|++|++++|.+++..|..|+.+++|+  +|++++|.+++..|..+.. .      +|+.|++.++
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~------~L~~L~l~~~  212 (606)
T 3t6q_A          140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-A------VFQSLNFGGT  212 (606)
T ss_dssp             CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-C------EEEEEECTTC
T ss_pred             cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-c------cccccccCCc
Confidence            77764434444577777777777777776667777777777  7777777777666654433 2      4666666333


Q ss_pred             cccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccc--cccEEeecCCcccccc
Q 048006          328 LTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQN--QIELLDISNTGISDTI  405 (833)
Q Consensus       328 ~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~--~L~~L~Ls~n~i~~~~  405 (833)
                      .  .++. .+..+.+++...+....+..                   .......+..+..+.  +|+.|++++|.+++..
T Consensus       213 ~--~~~~-~~~~l~~~~l~~l~~~~~~~-------------------~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~  270 (606)
T 3t6q_A          213 Q--NLLV-IFKGLKNSTIQSLWLGTFED-------------------MDDEDISPAVFEGLCEMSVESINLQKHYFFNIS  270 (606)
T ss_dssp             S--CHHH-HHHHTTTCEEEEEECCCCTT-------------------SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred             h--hHHH-Hhhhccccchhheechhhcc-------------------ccccccChhHhchhhcCceeEEEeecCccCccC
Confidence            2  1111 23333333332222211110                   111112234444444  7999999999999877


Q ss_pred             chhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCC
Q 048006          406 PDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGS  485 (833)
Q Consensus       406 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  485 (833)
                      +..|..+ ++|++|++++|.++ .+|...                                               ..++
T Consensus       271 ~~~~~~l-~~L~~L~l~~n~l~-~lp~~l-----------------------------------------------~~l~  301 (606)
T 3t6q_A          271 SNTFHCF-SGLQELDLTATHLS-ELPSGL-----------------------------------------------VGLS  301 (606)
T ss_dssp             TTTTTTC-TTCSEEECTTSCCS-CCCSSC-----------------------------------------------CSCT
T ss_pred             HHHhccc-cCCCEEeccCCccC-CCChhh-----------------------------------------------cccc
Confidence            7777655 47888888888776 233210                                               0147


Q ss_pred             cccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCC-CccCcCCccEEEcccCcCcccc--CccccCCCCCcEe
Q 048006          486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPD-SMGFLQNIQTLSLHNNRLTGEL--SSSFRNCSQLRLL  562 (833)
Q Consensus       486 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L  562 (833)
                      +|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+++..  +..+..+++|++|
T Consensus       302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  381 (606)
T 3t6q_A          302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL  381 (606)
T ss_dssp             TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred             cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence            899999999999988888999999999999999999866655 4899999999999999999776  7889999999999


Q ss_pred             ccCCCccCCCCCcchhhcCCccceEEecCCccccccccc-ccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcc
Q 048006          563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ-LCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPT  641 (833)
Q Consensus       563 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~  641 (833)
                      ++++|++.+..|..+. .+++|++|++++|++.+..+.. +..+++|++|++++|.+.+..|..+..+++|         
T Consensus       382 ~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------  451 (606)
T 3t6q_A          382 NLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL---------  451 (606)
T ss_dssp             ECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC---------
T ss_pred             ECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC---------
Confidence            9999999866666665 6999999999999999776654 8899999999999999998888888777766         


Q ss_pred             cccceEEeeccCcchhccccCcccEEEccCCcCCCC---CchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCC
Q 048006          642 IKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGA---VPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLS  718 (833)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  718 (833)
                                             ++|++++|++++.   .+..+..+++|++|++++|++++..|..|+.+++|+.|+|+
T Consensus       452 -----------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  508 (606)
T 3t6q_A          452 -----------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS  508 (606)
T ss_dssp             -----------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             -----------------------CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence                                   9999999999863   33678999999999999999999999999999999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCC
Q 048006          719 RNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       719 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      +|++++.+|..+.+++.| +|++++|++++.+|.. ..+..+..+++.|||+.|+|+
T Consensus       509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999999999999 9999999999888864 556778888999999999886

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.7e-52  Score=486.91  Aligned_cols=534  Identities=19%  Similarity=0.164  Sum_probs=377.5

Q ss_pred             cceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCC
Q 048006          138 LQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLE  217 (833)
Q Consensus       138 L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~  217 (833)
                      -++++.+++.+...  +..+.  +++++|++++|.++++  .+..++++++|++|++++|.+.+..|.  .+.. +++|+
T Consensus        13 ~~~~~c~~~~l~~i--p~~~~--~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~i~~~--~~~~-l~~L~   83 (606)
T 3vq2_A           13 NITYQCMDQKLSKV--PDDIP--SSTKNIDLSFNPLKIL--KSYSFSNFSELQWLDLSRCEIETIEDK--AWHG-LHHLS   83 (606)
T ss_dssp             TTEEECTTSCCSSC--CTTSC--TTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTT--TTTT-CTTCC
T ss_pred             CCceEccCCCcccC--CCCCC--CCcCEEECCCCCcCEe--ChhhccCCccCcEEeCCCCcccccCHH--Hhhc-hhhcC
Confidence            35677777776532  22222  6777777777777664  224567777777777777777666554  2223 37777


Q ss_pred             EEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccc-cccccccCCCCCcEEEccC
Q 048006          218 TLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG-GIPKFFGNMCSLITLNLSN  296 (833)
Q Consensus       218 ~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~  296 (833)
                      +|++++|.+++..|..+.++++ |++|++++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++
T Consensus        84 ~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A           84 NLILTGNPIQSFSPGSFSGLTS-LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY  162 (606)
T ss_dssp             EEECTTCCCCCCCTTSSTTCTT-CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred             EeECCCCcccccChhhcCCccc-CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence            7777777777766777777777 7777777777776666667777777777777777765 4566777777777777777


Q ss_pred             CCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCcc
Q 048006          297 NKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCK  376 (833)
Q Consensus       297 n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~  376 (833)
                      |++++..+..++.+.      +|+.                    .+++|++++|.+....+..+... +|++|++++|.
T Consensus       163 n~l~~~~~~~~~~l~------~L~~--------------------~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~  215 (606)
T 3vq2_A          163 NYIQTITVNDLQFLR------ENPQ--------------------VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNF  215 (606)
T ss_dssp             SCCCEECTTTTHHHH------HCTT--------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred             CcceecChhhhhhhh------cccc--------------------ccceeeccCCCcceeCcccccCc-eeeeeeccCCc
Confidence            777766555554443      2210                    12244555554444333333332 45555555554


Q ss_pred             CC-CCCChhhcccccccEEeecCCccccc---------cchhHHhhcccccEEEc-ccccccccCCccccccCCCCCcee
Q 048006          377 IG-PHFPKWLQTQNQIELLDISNTGISDT---------IPDWFWNLSNKFSFLDL-ASNQIKGKLPNLSSRFGTSNPGID  445 (833)
Q Consensus       377 l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~---------~~~~~~~~~~~L~~L~L-~~n~l~~~~p~~~~~~~~~l~~l~  445 (833)
                      +. +..|.++..++.++.+++..+.+.+.         .+..+...  .++.+++ ..|.+.+.+|.  ...+       
T Consensus       216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l--~l~~l~l~~~~~~~~~~~~--~~~l-------  284 (606)
T 3vq2_A          216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV--TIDEFRLTYTNDFSDDIVK--FHCL-------  284 (606)
T ss_dssp             SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS--EEEEEEECCCTTCCGGGGS--CGGG-------
T ss_pred             cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc--cHhheeccccccccccccc--cccC-------
Confidence            43 23455555666666555543332211         11111111  2444444 44444444443  1223       


Q ss_pred             cccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccC
Q 048006          446 ISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRI  525 (833)
Q Consensus       446 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  525 (833)
                                    ++++.|++++|.+... +.  ...+++|++|++++|.+ +.+| .+ .+++|++|++++|...+..
T Consensus       285 --------------~~L~~L~l~~~~~~~l-~~--l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~  344 (606)
T 3vq2_A          285 --------------ANVSAMSLAGVSIKYL-ED--VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF  344 (606)
T ss_dssp             --------------TTCSEEEEESCCCCCC-CC--CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC
T ss_pred             --------------CCCCEEEecCccchhh-hh--ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch
Confidence                          3444444444444322 21  11257899999999999 5777 45 8999999999999666544


Q ss_pred             CCCccCcCCccEEEcccCcCccc--cCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccccc-ccc
Q 048006          526 PDSMGFLQNIQTLSLHNNRLTGE--LSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP-FQL  602 (833)
Q Consensus       526 ~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~-~~l  602 (833)
                        .+..+++|++|++++|++++.  .+..+..+++|++|++++|.+. .+|..+. .+++|++|++++|++.+..| ..+
T Consensus       345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~  420 (606)
T 3vq2_A          345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAF  420 (606)
T ss_dssp             --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTT
T ss_pred             --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhh
Confidence              567899999999999999876  3888999999999999999988 5776665 68999999999999998877 688


Q ss_pred             cCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCC-CCchh
Q 048006          603 CQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG-AVPEE  681 (833)
Q Consensus       603 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~  681 (833)
                      ..+++|++|++++|++.+..|..+..+++|                                +.|++++|++++ .+|..
T Consensus       421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------~~L~l~~n~l~~~~~~~~  468 (606)
T 3vq2_A          421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSL--------------------------------NTLKMAGNSFKDNTLSNV  468 (606)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTC--------------------------------CEEECTTCEEGGGEECSC
T ss_pred             hccccCCEEECcCCCCCccchhhhcCCCCC--------------------------------CEEECCCCcCCCcchHHh
Confidence            999999999999999998888888777766                                999999999997 47888


Q ss_pred             hhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccC-ccc
Q 048006          682 IMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQ-SFN  760 (833)
Q Consensus       682 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~-~l~  760 (833)
                      ++.+++|++|+|++|++++..|..|+.+++|++|+|++|++++.+|..+..+++|++|++++|+++...+....+. .+.
T Consensus       469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~  548 (606)
T 3vq2_A          469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA  548 (606)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCC
T ss_pred             hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999995433334443 477


Q ss_pred             cccccCCCCCCCCCC
Q 048006          761 DTVYAGNPELCGLPL  775 (833)
Q Consensus       761 ~~~~~gn~~lc~~~~  775 (833)
                      .+.+.|||+.|+|+.
T Consensus       549 ~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          549 FFNLTNNSVACICEH  563 (606)
T ss_dssp             EEECCSCCCCCSSTT
T ss_pred             EEEccCCCcccCCcc
Confidence            888999999999875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-52  Score=500.62  Aligned_cols=542  Identities=23%  Similarity=0.227  Sum_probs=427.2

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecC
Q 048006           90 RHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLD  169 (833)
Q Consensus        90 ~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  169 (833)
                      +..|.++++++.  +|.   ..++|++|||++|.+++..|..|.++++|++|+|++|.......+..|+++++|++|+|+
T Consensus         7 ~~~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCCC--CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            467888899984  676   468999999999999988899999999999999999965433345678999999999999


Q ss_pred             CCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCC-CcccccccCCcEEEccC
Q 048006          170 ESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIY-PWLPNISSIFISIDLGF  248 (833)
Q Consensus       170 ~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~~L~~L~Ls~  248 (833)
                      +|.+.+.  .|..++++++|++|+|++|.+.+.+|.. ..+..+++|++|+|++|.+++..+ ..+.++++ |++|++++
T Consensus        82 ~N~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~-L~~L~Ls~  157 (844)
T 3j0a_A           82 SSKIYFL--HPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS-LKSIDFSS  157 (844)
T ss_dssp             TCCCCEE--CTTSSCSCSSCCCEECTTCCCSSCCSTT-CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS-CCEEEEES
T ss_pred             CCcCccc--CHhHccCCcccCEeeCcCCCCCcccccC-ccccccCCCCEEECCCCcccccccchhHhhCCC-CCEEECCC
Confidence            9998874  4678899999999999999998866542 123334889999999998887655 46788888 88888888


Q ss_pred             ccccccccccccCC--CCCcEEECcCCcccccccccccCCCC------CcEEEccCCCCCchhhHHHhhcCCccccCCcc
Q 048006          249 NQLQGSIPESFQHM--VYLEHLRLSFNELEGGIPKFFGNMCS------LITLNLSNNKLSGQLSEIIQNLSSGCLENSLK  320 (833)
Q Consensus       249 n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~  320 (833)
                      |.+++..+..+..+  ++|++|++++|.+.+..|..++.+++      |++|++++|.+++..+..+....         
T Consensus       158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l---------  228 (844)
T 3j0a_A          158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI---------  228 (844)
T ss_dssp             SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS---------
T ss_pred             CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc---------
Confidence            88888888888777  78888888888888877777766665      88888888888776665544321         


Q ss_pred             EEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhccc--ccccEEeecC
Q 048006          321 SLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQ--NQIELLDISN  398 (833)
Q Consensus       321 ~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l--~~L~~L~Ls~  398 (833)
                                        ..++++.+.++.+.....               +..+.+....+..+..+  ++|+.|++++
T Consensus       229 ------------------~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~  275 (844)
T 3j0a_A          229 ------------------SKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSH  275 (844)
T ss_dssp             ------------------CSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred             ------------------Ccccccceeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCC
Confidence                              123445555543322110               11122222333344443  6899999999


Q ss_pred             CccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccc
Q 048006          399 TGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISF  478 (833)
Q Consensus       399 n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~  478 (833)
                      |.+.+..+..+..+ ++|+.|++++|++++..|..                                             
T Consensus       276 n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~---------------------------------------------  309 (844)
T 3j0a_A          276 GFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEA---------------------------------------------  309 (844)
T ss_dssp             CCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTT---------------------------------------------
T ss_pred             CcccccChhhhhcC-CCCCEEECCCCcCCCCChHH---------------------------------------------
Confidence            99988777766554 36777777777766443321                                             


Q ss_pred             cccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCC
Q 048006          479 LCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQ  558 (833)
Q Consensus       479 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  558 (833)
                        +..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++.     ..+++
T Consensus       310 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~  382 (844)
T 3j0a_A          310 --FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPS  382 (844)
T ss_dssp             --TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCS
T ss_pred             --hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCC
Confidence              01147899999999999988899999999999999999999988888899999999999999999843     23789


Q ss_pred             CcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccc-cccccCCCCCCEEeccCCcCcccCCc-cccccccccccC
Q 048006          559 LRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKI-PFQLCQLAFLQVLDLSLNNISGKIPK-CFNNFTAMTQER  636 (833)
Q Consensus       559 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~  636 (833)
                      |+.|++++|++. .+|..    ..+++.|++++|.+++.. +..+..+++|+.|++++|++++..+. .+..        
T Consensus       383 L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--------  449 (844)
T 3j0a_A          383 IPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--------  449 (844)
T ss_dssp             CSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS--------
T ss_pred             cchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc--------
Confidence            999999999998 77764    567999999999998642 33466899999999999999865443 2222        


Q ss_pred             CCCcccccceEEeeccCcchhccccCcccEEEccCCcCC-----CCCchhhhcccCCcEEECCCccccccCCcccCCCCC
Q 048006          637 SSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN-----GAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKS  711 (833)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  711 (833)
                                              +++|+.|++++|.++     +..+..|.++++|++|+|++|++++..|..|..+++
T Consensus       450 ------------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  505 (844)
T 3j0a_A          450 ------------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA  505 (844)
T ss_dssp             ------------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred             ------------------------CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence                                    344589999999997     445567889999999999999999999999999999


Q ss_pred             CCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCC
Q 048006          712 LDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLP  776 (833)
Q Consensus       712 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~  776 (833)
                      |+.|+|++|++++..|..+.  ++|+.||+++|++++.+|..  +..+..+++.|||+.|+|++.
T Consensus       506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred             hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence            99999999999988877776  89999999999999999965  567788889999999999853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2e-52  Score=491.45  Aligned_cols=547  Identities=17%  Similarity=0.184  Sum_probs=285.4

Q ss_pred             CCCCCHHHHHHHHHhhhcCcCCCCCCCCCCCCC--CCCCC--Ccc------------cceEecCCCCcEEEEECCCCCCC
Q 048006            8 IIRCIDEEREALLTFKASLVDESGVLSSWGPED--EKRDC--CKW------------TGLRCSNKTNHVILLDLQPIDFD   71 (833)
Q Consensus         8 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~l~L~~~~~~   71 (833)
                      ..++..+|+.||++||+++.+|     +|+...  ...+|  |.|            .||+|+. .+||+.|+|++    
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----  332 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----  332 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc----
Confidence            3446678999999999999876     786311  01355  999            9999985 68999999999    


Q ss_pred             CCCcceecCccccCCCCCCEEeC-CCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCC
Q 048006           72 SFPLRGTISPALLKLHDLRHLNL-SFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFS  150 (833)
Q Consensus        72 ~~~l~~~~~~~l~~l~~L~~L~L-s~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~  150 (833)
                       +.+.|.+|+++++|++|++|+| ++|.+++. .|-.....    .++++.           ..+..++.....  .+..
T Consensus       333 -~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~----~~~l~~-----------~~l~~lr~~~~~--~~l~  393 (876)
T 4ecn_A          333 -FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEEL----TPDMSE-----------ERKHRIRMHYKK--MFLD  393 (876)
T ss_dssp             -TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCC----CSSCCH-----------HHHHHHHTHHHH--HHTC
T ss_pred             -CCCCCcCchHHhccccceEeeeccccccccc-cccccccc----ccccch-----------hHHHHHHHhhhh--hhhc
Confidence             7899999999999999999999 88877764 22111000    000000           001111110000  0000


Q ss_pred             CCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEcc--CCcCCC
Q 048006          151 TGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLS--DNNLTS  228 (833)
Q Consensus       151 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls--~n~l~~  228 (833)
                       ..+.               ..+..  .++..+...+....+               ..... ..++.+.+.  .|++++
T Consensus       394 -~~~~---------------~~~s~--l~~~~l~~~~~~~~i---------------~~~~~-l~l~~l~l~~~~N~L~~  439 (876)
T 4ecn_A          394 -YDQR---------------LNLSD--LLQDAINRNPEMKPI---------------KKDSR-ISLKDTQIGNLTNRITF  439 (876)
T ss_dssp             -CCGG---------------GGSCH--HHHHHHHTCTTSCCC---------------CCCCC-CCCCTTTTTCCSCEEEE
T ss_pred             -cCcc---------------hhhhH--HHHHHhhhCcccccc---------------ccccc-cchhhceeccccCcccc
Confidence             0000               00000  011111111100000               00000 112222222  244444


Q ss_pred             CCCCcccccccCCcEEEccCccccc-----------------ccccccc--CCCCCcEEECcCCcccccccccccCCCCC
Q 048006          229 SIYPWLPNISSIFISIDLGFNQLQG-----------------SIPESFQ--HMVYLEHLRLSFNELEGGIPKFFGNMCSL  289 (833)
Q Consensus       229 ~~~~~l~~l~~~L~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  289 (833)
                       +|..+.++++ |++|+|++|.+++                 .+|..++  ++++|++|+|++|++.+.+|..|+++++|
T Consensus       440 -IP~~l~~L~~-L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L  517 (876)
T 4ecn_A          440 -ISKAIQRLTK-LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL  517 (876)
T ss_dssp             -ECGGGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred             -hhHHHhcCCC-CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence             4555555555 5555555555554                 5888877  99999999999999999999999999999


Q ss_pred             cEEEccCCC-CCc-hhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCC--CccCCc
Q 048006          290 ITLNLSNNK-LSG-QLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSH--DWVPPF  365 (833)
Q Consensus       290 ~~L~Ls~n~-l~~-~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~  365 (833)
                      ++|++++|+ +++ .+|..++.++                       ..+..+++|++|++++|.+. .++.  .+..++
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~-----------------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~  573 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLA-----------------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV  573 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHH-----------------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred             CEEECcCCCCcccccchHHHHhhh-----------------------hcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence            999999998 888 8888887653                       02455666777777666665 3333  333333


Q ss_pred             cccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCcee
Q 048006          366 QLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGID  445 (833)
Q Consensus       366 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~  445 (833)
                      +|++|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+                                 
T Consensus       574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l---------------------------------  617 (876)
T 4ecn_A          574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAF---------------------------------  617 (876)
T ss_dssp             TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEE---------------------------------
T ss_pred             CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhc---------------------------------
Confidence            4444444444433 333 3344444444444444433 222222211                                 


Q ss_pred             cccCcccccCCCCCCCCceeecCCCcccccccccccccCCc-ccEEEcCCCcCcCCCCCcccCCCC--CcEEEccCCccc
Q 048006          446 ISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSK-LTYVDLSSNLLSGKLPDCWWTFDS--LVILNLENNSFS  522 (833)
Q Consensus       446 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~  522 (833)
                                                             ++ |++|++++|.++ .+|..+..++.  |+.|++++|.+.
T Consensus       618 ---------------------------------------~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~  657 (876)
T 4ecn_A          618 ---------------------------------------TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG  657 (876)
T ss_dssp             ---------------------------------------CTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred             ---------------------------------------cccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCC
Confidence                                                   22 333333333333 22333322221  333444444333


Q ss_pred             ccCCCC---cc--CcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccc
Q 048006          523 GRIPDS---MG--FLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGK  597 (833)
Q Consensus       523 ~~~~~~---~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~  597 (833)
                      +.+|..   +.  .+++|++|++++|+++...+..+..+++|+.|++++|++. .+|..++....               
T Consensus       658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~---------------  721 (876)
T 4ecn_A          658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD---------------  721 (876)
T ss_dssp             TTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT---------------
T ss_pred             CccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc---------------
Confidence            322211   11  1224455555555554222222234455555555555554 44444332111               


Q ss_pred             ccccccCCCCCCEEeccCCcCcccCCcccc--ccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCC
Q 048006          598 IPFQLCQLAFLQVLDLSLNNISGKIPKCFN--NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN  675 (833)
Q Consensus       598 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  675 (833)
                        ..+.++++|+.|+|++|+++ .+|..+.  .+++|                                +.|+|++|+++
T Consensus       722 --~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L--------------------------------~~L~Ls~N~L~  766 (876)
T 4ecn_A          722 --GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL--------------------------------SNMDVSYNCFS  766 (876)
T ss_dssp             --SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC--------------------------------CEEECCSSCCS
T ss_pred             --ccccccCCccEEECCCCCCc-cchHHhhhccCCCc--------------------------------CEEEeCCCCCC
Confidence              00011124444445444444 3333332  33222                                44555555554


Q ss_pred             CCCchhhhcccCCcEEECC------CccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccC
Q 048006          676 GAVPEEIMDLVGLVALNLS------KNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGK  749 (833)
Q Consensus       676 ~~~p~~l~~l~~L~~L~Ls------~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  749 (833)
                      + +|..+..+++|+.|+|+      +|++.+.+|..|.++++|+.|+|++|++ +.+|..+.  ++|+.||+++|++...
T Consensus       767 ~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          767 S-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             S-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             c-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence            3 44445555555555554      4777778888888888888888888888 57777665  5788888888887654


Q ss_pred             CCCcc-ccCccccccccCCCCCC--CCC
Q 048006          750 IPTVT-QLQSFNDTVYAGNPELC--GLP  774 (833)
Q Consensus       750 ip~~~-~~~~l~~~~~~gn~~lc--~~~  774 (833)
                      -+... .........+.+|+..+  ||+
T Consensus       843 ~~~~~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          843 DVTSVCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             ECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred             ChHHccccccchheeecCCCccccCCCC
Confidence            43221 11112334455665544  554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.5e-49  Score=452.76  Aligned_cols=502  Identities=23%  Similarity=0.262  Sum_probs=311.4

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEE
Q 048006           87 HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYL  166 (833)
Q Consensus        87 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  166 (833)
                      +++++|+|++|.+++. .+..|..+++|++|+|++|.+.+..|..|.++++|++|++++|.+.. ..+..|+++++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccc
Confidence            4678888888888764 45577788888888888888776666777778888888888777653 233455666666666


Q ss_pred             ecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCC-CCCCcccccccCCcEEE
Q 048006          167 NLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTS-SIYPWLPNISSIFISID  245 (833)
Q Consensus       167 ~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~~L~~L~  245 (833)
                      ++++|.++.++..  .++++                           ++|++|++++|.+++ .+|..+.++++ |++|+
T Consensus       106 ~L~~n~l~~l~~~--~~~~l---------------------------~~L~~L~L~~n~l~~~~lp~~~~~l~~-L~~L~  155 (570)
T 2z63_A          106 VAVETNLASLENF--PIGHL---------------------------KTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLD  155 (570)
T ss_dssp             ECTTSCCCCSTTC--SCTTC---------------------------TTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEE
T ss_pred             cccccccccCCCc--ccccc---------------------------ccccEEecCCCccceecChhhhcccCC-CCEEe
Confidence            6666655553221  23444                           555555555555544 24555555555 66666


Q ss_pred             ccCccccccccccccCCCCC----cEEECcCCcccccccccccCCCCCcEEEccCCCCC-chhhHHHhhcCCccccCCcc
Q 048006          246 LGFNQLQGSIPESFQHMVYL----EHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLS-GQLSEIIQNLSSGCLENSLK  320 (833)
Q Consensus       246 Ls~n~l~~~~p~~~~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~~~~~~~L~  320 (833)
                      +++|.+++..+..++.+++|    ++|++++|.+++..|..+... +|++|++++|... ...+..+..++      .++
T Consensus       156 l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~------~l~  228 (570)
T 2z63_A          156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLA------GLE  228 (570)
T ss_dssp             CTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTT------TCE
T ss_pred             CcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCcc------ccc
Confidence            66666666666666666666    677777777777666666555 6778887777543 23455566665      555


Q ss_pred             EEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCc--cccEEEccCc-cCCCCCChhhcccccccEEeec
Q 048006          321 SLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF--QLIIISLSSC-KIGPHFPKWLQTQNQIELLDIS  397 (833)
Q Consensus       321 ~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~Ls  397 (833)
                      .+.+....        +....+++.  +.        ...+..+.  .++.+++.++ .+.+..|..+..+++|+.|+++
T Consensus       229 ~~~l~~~~--------~~~~~~l~~--~~--------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~  290 (570)
T 2z63_A          229 VHRLVLGE--------FRNEGNLEK--FD--------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV  290 (570)
T ss_dssp             EEEEEEEE--------CCCCSSCEE--CC--------TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred             eeeecccc--------ccCchhhhh--cc--------hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence            55441110        011111111  01        11111111  3566666666 5666778888888888888888


Q ss_pred             CCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccccccc
Q 048006          398 NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSIS  477 (833)
Q Consensus       398 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~  477 (833)
                      +|.++ .+|..+...  +|++|++++|.+. .+|..                                            
T Consensus       291 ~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~~--------------------------------------------  322 (570)
T 2z63_A          291 SVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPTL--------------------------------------------  322 (570)
T ss_dssp             SCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCBC--------------------------------------------
T ss_pred             Cccch-hhhhhhccC--CccEEeeccCccc-ccCcc--------------------------------------------
Confidence            88776 344443332  3444444444433 11110                                            


Q ss_pred             ccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCC
Q 048006          478 FLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCS  557 (833)
Q Consensus       478 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  557 (833)
                           .+++|++|++++|.+.+..+.  ..+++|++|++++|.+++..                      ..+..+..++
T Consensus       323 -----~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~----------------------~~~~~~~~~~  373 (570)
T 2z63_A          323 -----KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG----------------------CCSQSDFGTT  373 (570)
T ss_dssp             -----BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE----------------------EEEHHHHTCS
T ss_pred             -----cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc----------------------cccccccccC
Confidence                 024455555555554433332  34445555555555444322                      0134444555


Q ss_pred             CCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccccc-ccccCCCCCCEEeccCCcCcccCCccccccccccccC
Q 048006          558 QLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP-FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQER  636 (833)
Q Consensus       558 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  636 (833)
                      +|++|++++|++. .+|..+. .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..|..+++|    
T Consensus       374 ~L~~L~l~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----  447 (570)
T 2z63_A          374 SLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL----  447 (570)
T ss_dssp             CCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC----
T ss_pred             ccCEEECCCCccc-ccccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC----
Confidence            5555555555554 2333322 45555555555555554433 345566666666666666666666655555544    


Q ss_pred             CCCcccccceEEeeccCcchhccccCcccEEEccCCcCC-CCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEE
Q 048006          637 SSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN-GAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFL  715 (833)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  715 (833)
                                                  +.|++++|+++ +.+|..+..+++|++|++++|++++..|..|..+++|+.|
T Consensus       448 ----------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          448 ----------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             ----------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ----------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence                                        66777777765 4577778888999999999999998889999999999999


Q ss_pred             eCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCcccc
Q 048006          716 DLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQL  756 (833)
Q Consensus       716 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  756 (833)
                      ++++|++++..|..+..+++|+.|++++|+++|.+|....+
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            99999999988888999999999999999999999986554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-48  Score=448.16  Aligned_cols=510  Identities=21%  Similarity=0.225  Sum_probs=308.4

Q ss_pred             CCcccceEecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCC
Q 048006           45 CCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVF  124 (833)
Q Consensus        45 ~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l  124 (833)
                      .|.|.|| |+...               +.++ .+|..+.  ++|++|+|++|++++. .|..|..+++|++|+|++|.+
T Consensus         3 ~C~~~~~-c~~~~---------------~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i   62 (549)
T 2z81_A            3 SCDASGV-CDGRS---------------RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRI   62 (549)
T ss_dssp             EECTTSE-EECTT---------------SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCC
T ss_pred             cCCCCce-EECCC---------------Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCc
Confidence            4899998 86432               2232 3444443  7899999999999875 678899999999999999999


Q ss_pred             CCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCC
Q 048006          125 AGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIP  204 (833)
Q Consensus       125 ~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  204 (833)
                      .+..|..|+++++|++|++++|.+.. ..+..++++++|++|++++|.+++. ..|..++++++|++|++++|.+.+.+|
T Consensus        63 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A           63 NTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             CccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCccccc-chhhhhhccCCccEEECCCCccccccC
Confidence            98888889999999999999998864 3334577888888888888877754 133456777777777777776444444


Q ss_pred             ccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccc--c-c
Q 048006          205 LSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGI--P-K  281 (833)
Q Consensus       205 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p-~  281 (833)
                      .  ..+..+++|++|++++|.+++..|..+..+++ |++|++++|.+....+..+..+++|++|++++|++++..  | .
T Consensus       141 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  217 (549)
T 2z81_A          141 R--IDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP  217 (549)
T ss_dssp             T--TTTTTCCEEEEEEEEETTCCEECTTTTTTCSE-EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred             H--hhhhcccccCeeeccCCcccccChhhhhcccc-CceEecccCcccccchhhHhhcccccEEEccCCccccccccccc
Confidence            2  22223366666666666666666666666666 666666666655332222345666666666666666431  1 1


Q ss_pred             cccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCc
Q 048006          282 FFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDW  361 (833)
Q Consensus       282 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  361 (833)
                      ....+++|++|++++|.+++..+..+..                          .+..+++|+.+++++|.+.+..... 
T Consensus       218 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~--------------------------~~~~~~~L~~l~l~~~~~~~~~~~~-  270 (549)
T 2z81_A          218 VDEVSSPMKKLAFRGSVLTDESFNELLK--------------------------LLRYILELSEVEFDDCTLNGLGDFN-  270 (549)
T ss_dssp             SCCCCCCCCEEEEESCEEEHHHHHHHHG--------------------------GGGGCTTCCEEEEESCEEECCSCCC-
T ss_pred             hhhhhhcccceeccccccchhHHHHHHH--------------------------Hhhhhcccccccccccccccccccc-
Confidence            1234556666666666655544443322                          1234455555555555443311000 


Q ss_pred             cCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCC
Q 048006          362 VPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSN  441 (833)
Q Consensus       362 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l  441 (833)
                                       ......+..+++|+.|++.++.+....                         ..         
T Consensus       271 -----------------~~~~~~~~~l~~L~~L~l~~~~i~~~~-------------------------~~---------  299 (549)
T 2z81_A          271 -----------------PSESDVVSELGKVETVTIRRLHIPQFY-------------------------LF---------  299 (549)
T ss_dssp             -----------------CCTTTCCCCCTTCCEEEEESCBCSCGG-------------------------GS---------
T ss_pred             -----------------ccchhhhhhhcccccccccccccchhh-------------------------hc---------
Confidence                             000011222333333333333221100                         00         


Q ss_pred             CceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcc-cCCCCCcEEEccCCc
Q 048006          442 PGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCW-WTFDSLVILNLENNS  520 (833)
Q Consensus       442 ~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~  520 (833)
                                        .              .++... ...++|++|++++|.+. .+|..+ ..+++|++|++++|+
T Consensus       300 ------------------~--------------~l~~~~-~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~  345 (549)
T 2z81_A          300 ------------------Y--------------DLSTVY-SLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENL  345 (549)
T ss_dssp             ------------------C--------------CCCHHH-HHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSC
T ss_pred             ------------------c--------------cchhhh-hhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCc
Confidence                              0              000000 00244555555555554 333333 345555555555555


Q ss_pred             ccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCc--chhhcCCccceEEecCCcccccc
Q 048006          521 FSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT--WMGESLSNLIVLSLKSNKFHGKI  598 (833)
Q Consensus       521 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~~l~~L~~L~L~~N~l~~~~  598 (833)
                      +++.+|..                     +..+..+++|++|++++|+++ .++.  ..+..+++|++|++++|+++ .+
T Consensus       346 l~~~~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l  402 (549)
T 2z81_A          346 MVEEYLKN---------------------SACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PM  402 (549)
T ss_dssp             CCHHHHHH---------------------HTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred             cccccccc---------------------hhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence            55433210                     112344455555555555554 2221  11224556666666666665 45


Q ss_pred             cccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCC
Q 048006          599 PFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAV  678 (833)
Q Consensus       599 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  678 (833)
                      |..+..+++|++|++++|++++ +|..+                                  +++|+.|++++|++++.+
T Consensus       403 p~~~~~~~~L~~L~Ls~N~l~~-l~~~~----------------------------------~~~L~~L~Ls~N~l~~~~  447 (549)
T 2z81_A          403 PDSCQWPEKMRFLNLSSTGIRV-VKTCI----------------------------------PQTLEVLDVSNNNLDSFS  447 (549)
T ss_dssp             CSCCCCCTTCCEEECTTSCCSC-CCTTS----------------------------------CTTCSEEECCSSCCSCCC
T ss_pred             ChhhcccccccEEECCCCCccc-ccchh----------------------------------cCCceEEECCCCChhhhc
Confidence            5556666777777777777652 22221                                  123488888888888643


Q ss_pred             chhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccc
Q 048006          679 PEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQ  755 (833)
Q Consensus       679 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~  755 (833)
                          ..+++|++|+|++|+++ .+|. ...+++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.+|....
T Consensus       448 ----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  518 (549)
T 2z81_A          448 ----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  518 (549)
T ss_dssp             ----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             ----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHH
Confidence                57889999999999998 6666 56789999999999999999999999999999999999999999985433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.6e-46  Score=440.17  Aligned_cols=567  Identities=23%  Similarity=0.186  Sum_probs=362.8

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCccccc
Q 048006           79 ISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLS  158 (833)
Q Consensus        79 ~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~  158 (833)
                      +|..+.  +++++|||++|+|++. .+..|.++++|++|+|++|.|++..|.+|.+|++|++|+|++|++.. ..+..|+
T Consensus        46 vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~  121 (635)
T 4g8a_A           46 IPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFS  121 (635)
T ss_dssp             CCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGT
T ss_pred             cCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhc
Confidence            444442  4789999999999964 45689999999999999999997777789999999999999998764 3334577


Q ss_pred             CCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCC-CCccccccccCCCCCEEEccCCcCCCCCCCccccc
Q 048006          159 HLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPV-IPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNI  237 (833)
Q Consensus       159 ~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l  237 (833)
                      ++++|++|++++|++++++.  ..++++++|++|++++|.+.+. .|.   ....+++|++|++++|++++..+..+..+
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~l~~L  196 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNKIQSIYCTDLRVL  196 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred             CCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCch---hhccchhhhhhcccCccccccccccccch
Confidence            77777777777777766422  2356666666666666665443 222   11222455555555555544433333322


Q ss_pred             ccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchh-hHHHhhcCCcccc
Q 048006          238 SSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL-SEIIQNLSSGCLE  316 (833)
Q Consensus       238 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~~~~~  316 (833)
                      .. ++                    .....++++.|.++...+..+ ....++.+++.+|...... +..+..+.     
T Consensus       197 ~~-l~--------------------~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~-----  249 (635)
T 4g8a_A          197 HQ-MP--------------------LLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLA-----  249 (635)
T ss_dssp             HT-CT--------------------TCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTT-----
T ss_pred             hh-hh--------------------hhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCc-----
Confidence            21 10                    112356666666664433333 3334566666666554322 23344444     


Q ss_pred             CCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCC---CCChhhcccccccE
Q 048006          317 NSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGP---HFPKWLQTQNQIEL  393 (833)
Q Consensus       317 ~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~  393 (833)
                       .++...+..+....        .          ..+.......+.....+....+..+....   ..+..+....+++.
T Consensus       250 -~l~~~~l~~~~~~~--------~----------~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  310 (635)
T 4g8a_A          250 -GLEVHRLVLGEFRN--------E----------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSS  310 (635)
T ss_dssp             -TCEEEEEEEECCTT--------S----------CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSE
T ss_pred             -cccccccccccccc--------c----------cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccc
Confidence             33333331000000        0          00001111112222223333322222111   12223344455555


Q ss_pred             EeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccc
Q 048006          394 LDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFS  473 (833)
Q Consensus       394 L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~  473 (833)
                      +++.++.+....+..+   ...++.|++.+|.+.                         +..+..               
T Consensus       311 l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~-------------------------~~~~~~---------------  347 (635)
T 4g8a_A          311 FSLVSVTIERVKDFSY---NFGWQHLELVNCKFG-------------------------QFPTLK---------------  347 (635)
T ss_dssp             EEEESCEEEECGGGGS---CCCCSEEEEESCEES-------------------------SCCCCB---------------
T ss_pred             cccccccccccccccc---chhhhhhhccccccc-------------------------CcCccc---------------
Confidence            5555555443222111   113444444444333                         221111               


Q ss_pred             ccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccc--cCCCCccCcCCccEEEcccCcCccccCc
Q 048006          474 GSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSG--RIPDSMGFLQNIQTLSLHNNRLTGELSS  551 (833)
Q Consensus       474 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~  551 (833)
                                +..|+.++++.|.+....  .+..+++|+.+++++|.+..  ..+..+..+.+|+++++..|.... .+.
T Consensus       348 ----------l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~  414 (635)
T 4g8a_A          348 ----------LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSS  414 (635)
T ss_dssp             ----------CTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECS
T ss_pred             ----------chhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccc
Confidence                      255667777777665332  34467788888888887753  344455667889999999888874 455


Q ss_pred             cccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc-ccCCccccccc
Q 048006          552 SFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS-GKIPKCFNNFT  630 (833)
Q Consensus       552 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~  630 (833)
                      .+..+++|+.+++++|......+...+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+. +..|..|..++
T Consensus       415 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~  494 (635)
T 4g8a_A          415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  494 (635)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence            67888999999999988886777666667899999999999999888888999999999999999854 35677777666


Q ss_pred             cccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCC
Q 048006          631 AMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLK  710 (833)
Q Consensus       631 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  710 (833)
                      +|                                +.|+|++|++++..|..|.++++|++|+|++|+|++..|..|.+++
T Consensus       495 ~L--------------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  542 (635)
T 4g8a_A          495 NL--------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN  542 (635)
T ss_dssp             TC--------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT
T ss_pred             cc--------------------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC
Confidence            66                                8999999999998999999999999999999999999899999999


Q ss_pred             CCCEEeCCCCcCcccCCccccCC-CCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 048006          711 SLDFLDLSRNQLVGGIPSSLSQL-SGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPG  789 (833)
Q Consensus       711 ~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c~~~~~~~~~~  789 (833)
                      +|++|||++|+|++..|..+..+ ++|++|++++|+++|.+...+...+++.     +...-.......|..|+..+|.+
T Consensus       543 ~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~-----~~~~~~~~~~~~C~~P~~~~g~~  617 (635)
T 4g8a_A          543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD-----QRQLLVEVERMECATPSDKQGMP  617 (635)
T ss_dssp             TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHH-----TTTTBSCGGGCBBCSSTTTTTCB
T ss_pred             CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHh-----CCCccCCCCCceeCCchHHCCCE
Confidence            99999999999999999999988 6899999999999998875433333321     11111111235788898888877


Q ss_pred             CccC
Q 048006          790 ITEG  793 (833)
Q Consensus       790 ~~~~  793 (833)
                      +.+.
T Consensus       618 l~~~  621 (635)
T 4g8a_A          618 VLSL  621 (635)
T ss_dssp             GGGC
T ss_pred             eeee
Confidence            7654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-46  Score=430.97  Aligned_cols=515  Identities=20%  Similarity=0.204  Sum_probs=318.8

Q ss_pred             cEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcE
Q 048006          164 RYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFIS  243 (833)
Q Consensus       164 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~  243 (833)
                      ++++.++..++.+   |..+  .+++++|++++|.+++..+.  .+.. +++|++|++++|++++..+..+.++++ |++
T Consensus        10 ~~~~c~~~~l~~i---p~~l--~~~l~~L~Ls~n~l~~~~~~--~~~~-l~~L~~L~Ls~n~i~~i~~~~~~~l~~-L~~   80 (570)
T 2z63_A           10 ITYQCMELNFYKI---PDNL--PFSTKNLDLSFNPLRHLGSY--SFFS-FPELQVLDLSRCEIQTIEDGAYQSLSH-LST   80 (570)
T ss_dssp             TEEECCSSCCSSC---CSSS--CSSCCEEECCSCCCCEECTT--TTTT-CSSCCEEECTTCCCCEECTTTTTTCTT-CCE
T ss_pred             cEEEeCCCCcccc---CCCc--cccccEEEccCCccCccChh--HhhC-CCCceEEECCCCcCCccCcccccCchh-CCE
Confidence            4455555555443   2222  13566666666665554443  2222 255666666666665555555555555 666


Q ss_pred             EEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCc-hhhHHHhhcCCccccCCccEE
Q 048006          244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG-QLSEIIQNLSSGCLENSLKSL  322 (833)
Q Consensus       244 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~~~~~~L~~L  322 (833)
                      |++++|.+++..|..|+++++|++|++++|++++..+..++++++|++|++++|.+++ .+|..+++++      +|++|
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~------~L~~L  154 (570)
T 2z63_A           81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------NLEHL  154 (570)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT------TCCEE
T ss_pred             EeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccC------CCCEE
Confidence            6666666655555556666666666666666555444445556666666666665554 2355555555      55555


Q ss_pred             EcccccccccChhhhcCCCCC----CEEECcCCccccccCCCccCCccccEEEccCccCCC-CCChhhcccccccEEeec
Q 048006          323 YLENSLTGVISESFFSNISNL----KELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGP-HFPKWLQTQNQIELLDIS  397 (833)
Q Consensus       323 ~L~~~~~~~i~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~Ls  397 (833)
                      ++++|.+..+++..|..+++|    +.+++++|.+.+..+..+... +|+.|++++|.... .++..+..++.++.+.+.
T Consensus       155 ~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~  233 (570)
T 2z63_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  233 (570)
T ss_dssp             ECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred             eCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeec
Confidence            554444444444444444444    445555554444433333322 34444444332211 122222233333222221


Q ss_pred             CCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCC-cccccc
Q 048006          398 NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKN-RFSGSI  476 (833)
Q Consensus       398 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~~~  476 (833)
                                               ...+...-         .+.  .+....+.+..   .-.++.++++++ .+.+.+
T Consensus       234 -------------------------~~~~~~~~---------~l~--~~~~~~~~~l~---~l~l~~l~l~~~~~~~~~~  274 (570)
T 2z63_A          234 -------------------------LGEFRNEG---------NLE--KFDKSALEGLC---NLTIEEFRLAYLDYYLDDI  274 (570)
T ss_dssp             -------------------------EEECCCCS---------SCE--ECCTTTTGGGG---GSEEEEEEEEETTEEESCS
T ss_pred             -------------------------cccccCch---------hhh--hcchhhhcccc---ccchhhhhhhcchhhhhhc
Confidence                                     11111000         000  00011111100   001233344433 333333


Q ss_pred             cccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCC
Q 048006          477 SFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNC  556 (833)
Q Consensus       477 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  556 (833)
                      +.... .+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.  ..+++|++|++++|.+.+..+.  ..+
T Consensus       275 ~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~  346 (570)
T 2z63_A          275 IDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDL  346 (570)
T ss_dssp             TTTTG-GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBC
T ss_pred             hhhhc-CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccC
Confidence            22211 2477888888888877 466677777 8888888888877 4443  4677888888888887766554  677


Q ss_pred             CCCcEeccCCCccCCCC--CcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCC-cccccccccc
Q 048006          557 SQLRLLDLGKNALYGEI--PTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP-KCFNNFTAMT  633 (833)
Q Consensus       557 ~~L~~L~L~~n~l~~~~--p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~  633 (833)
                      ++|++|++++|++.+..  |..+. .+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..| ..+.++++  
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~--  422 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN--  422 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT--
T ss_pred             CCCCEEeCcCCccCcccccccccc-ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC--
Confidence            88888888888876332  44444 578888888888888754443 7788888888888888876555 34555544  


Q ss_pred             ccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCcccc-ccCCcccCCCCCC
Q 048006          634 QERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLT-GQISPKIGQLKSL  712 (833)
Q Consensus       634 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L  712 (833)
                                                    |+.|++++|.+++..|..+..+++|++|++++|.++ +.+|..+..+++|
T Consensus       423 ------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  472 (570)
T 2z63_A          423 ------------------------------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  472 (570)
T ss_dssp             ------------------------------CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             ------------------------------CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence                                          499999999999999999999999999999999998 6899999999999


Q ss_pred             CEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCCC
Q 048006          713 DFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLPL  775 (833)
Q Consensus       713 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~~  775 (833)
                      ++|++++|++++..|..+..+++|++|++++|++++.+|.. ..+..+..+.+.+||+.|+|+.
T Consensus       473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999999999999999999999999999999987764 5677888899999999998873

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.8e-46  Score=430.86  Aligned_cols=463  Identities=22%  Similarity=0.236  Sum_probs=321.1

Q ss_pred             CcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCcc
Q 048006          241 FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK  320 (833)
Q Consensus       241 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~  320 (833)
                      +++|++++|.+++..|..|.++++|++|++++|++++..|..|..+++|++|++++|++++..+..++.++      +|+
T Consensus        28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~  101 (549)
T 2z81_A           28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS------SLK  101 (549)
T ss_dssp             CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT------TCC
T ss_pred             ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC------CCc
Confidence            55555555555555555555666666666666666555555556666666666666666655555555555      566


Q ss_pred             EEEcccccccccC-hhhhcCCCCCCEEECcCCcccccc-CCCccCCccccEEEccCccCCCCCChhhcccccccEEeecC
Q 048006          321 SLYLENSLTGVIS-ESFFSNISNLKELHLANNPLVLKL-SHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISN  398 (833)
Q Consensus       321 ~L~L~~~~~~~i~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~  398 (833)
                      +|++++|.+..++ +..|.++++|++|++++|.+.+.. +..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  181 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL  181 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence            6666555444321 124677777777777777643333 35677777777777877777777777888888888888888


Q ss_pred             CccccccchhHHhhcccccEEEcccccccccC--CccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccc
Q 048006          399 TGISDTIPDWFWNLSNKFSFLDLASNQIKGKL--PNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSI  476 (833)
Q Consensus       399 n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~  476 (833)
                      |.+. .+|..+....++|++|++++|++++..  |......                     ..+++.|++++|.+.+..
T Consensus       182 n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---------------------~~~L~~L~l~~n~l~~~~  239 (549)
T 2z81_A          182 SESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV---------------------SSPMKKLAFRGSVLTDES  239 (549)
T ss_dssp             SBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC---------------------CCCCCEEEEESCEEEHHH
T ss_pred             Cccc-ccchhhHhhcccccEEEccCCccccccccccchhhh---------------------hhcccceeccccccchhH
Confidence            8775 445555444567888888888887532  1111111                     234555555555544432


Q ss_pred             cccc---cccCCcccEEEcCCCcCcCCC------CCcccCCCCCcEEEccCCcccccC-----CCCccCcCCccEEEccc
Q 048006          477 SFLC---SISGSKLTYVDLSSNLLSGKL------PDCWWTFDSLVILNLENNSFSGRI-----PDSMGFLQNIQTLSLHN  542 (833)
Q Consensus       477 ~~~~---~~~~~~L~~L~ls~n~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~L~~  542 (833)
                      +...   ...+++|+.+++++|.+.+..      ...+..+++|+.|++.++.+....     +..+...++|++|++++
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~  319 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN  319 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred             HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence            2111   012467778888887766531      123566778888998888765321     11123356899999999


Q ss_pred             CcCccccCccc-cCCCCCcEeccCCCccCCCCCcc--hhhcCCccceEEecCCccccccc--ccccCCCCCCEEeccCCc
Q 048006          543 NRLTGELSSSF-RNCSQLRLLDLGKNALYGEIPTW--MGESLSNLIVLSLKSNKFHGKIP--FQLCQLAFLQVLDLSLNN  617 (833)
Q Consensus       543 n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~--~~~~l~~L~~L~L~~N~l~~~~~--~~l~~l~~L~~L~Ls~N~  617 (833)
                      |++. .+|..+ ..+++|++|++++|++.+.+|..  ....+++|++|++++|++++..+  ..+..+++|++|++++|+
T Consensus       320 n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  398 (549)
T 2z81_A          320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT  398 (549)
T ss_dssp             SCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             Cccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence            9987 556555 67999999999999998766532  12358899999999999986532  458889999999999999


Q ss_pred             CcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCcc
Q 048006          618 ISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNH  697 (833)
Q Consensus       618 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  697 (833)
                      ++ .+|..+..+++|                                ++|++++|+++ .+|..+  .++|++|+|++|+
T Consensus       399 l~-~lp~~~~~~~~L--------------------------------~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~  442 (549)
T 2z81_A          399 FH-PMPDSCQWPEKM--------------------------------RFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNN  442 (549)
T ss_dssp             CC-CCCSCCCCCTTC--------------------------------CEEECTTSCCS-CCCTTS--CTTCSEEECCSSC
T ss_pred             Cc-cCChhhcccccc--------------------------------cEEECCCCCcc-cccchh--cCCceEEECCCCC
Confidence            98 567766665555                                99999999998 455443  2689999999999


Q ss_pred             ccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCC
Q 048006          698 LTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       698 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      +++.+    ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+..+++.|||+.|+|+
T Consensus       443 l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          443 LDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             hhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            99653    57899999999999999 6776 567899999999999999988863 677888889999999999886

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.7e-46  Score=423.44  Aligned_cols=456  Identities=22%  Similarity=0.196  Sum_probs=322.3

Q ss_pred             CEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccC
Q 048006          217 ETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSN  296 (833)
Q Consensus       217 ~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  296 (833)
                      ++|++++|.++ .+|..++  ++ +++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QK-TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TT-CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc--cc-ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            46888888888 4666665  44 88888888888887777888888888888888888887788888888888888888


Q ss_pred             CCCCchhhHHHhhcCCccccCCccEEEcccccccccC-hhhhcCCCCCCEEECcCCccccccCCCccCCccc--cEEEcc
Q 048006          297 NKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVIS-ESFFSNISNLKELHLANNPLVLKLSHDWVPPFQL--IIISLS  373 (833)
Q Consensus       297 n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L~L~  373 (833)
                      |++++ +|..  .++      +|++|++++|.+..++ +..|+++++|++|++++|.+.+   ..+..+++|  ++|+++
T Consensus        79 N~l~~-lp~~--~l~------~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~  146 (520)
T 2z7x_B           79 NKLVK-ISCH--PTV------NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV  146 (520)
T ss_dssp             SCCCE-EECC--CCC------CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred             Cceee-cCcc--ccC------CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence            88874 3432  445      6777777655555432 2356666666666666666654   233344444  555555


Q ss_pred             CccC--CCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCc-
Q 048006          374 SCKI--GPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNH-  450 (833)
Q Consensus       374 ~~~l--~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~-  450 (833)
                      +|.+  .+..|..+..+.                        .+...+++++|.+.+.++......++.++.+++++|. 
T Consensus       147 ~n~l~~~~~~~~~l~~l~------------------------~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  202 (520)
T 2z7x_B          147 LGETYGEKEDPEGLQDFN------------------------TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE  202 (520)
T ss_dssp             ECTTTTSSCCTTTTTTCC------------------------EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred             cccccccccccccccccc------------------------cceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence            5555  444444444433                        2222334444444444443333334444444444443 


Q ss_pred             ------ccccCCC--CCCCCceeecCCCccccccccccc--ccCCcccEEEcCCCcCcCCCCCcc-----cCCCCCcEEE
Q 048006          451 ------FEGLIPP--LPSNSSFLNLSKNRFSGSISFLCS--ISGSKLTYVDLSSNLLSGKLPDCW-----WTFDSLVILN  515 (833)
Q Consensus       451 ------l~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~~~~-----~~l~~L~~L~  515 (833)
                            +.+.++.  ..++++.|++++|.+.+.......  ...++|++|++++|.+++.+|..+     ..+++|+.++
T Consensus       203 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~  282 (520)
T 2z7x_B          203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ  282 (520)
T ss_dssp             TTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEE
T ss_pred             ccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecc
Confidence                  2222221  134566666666665543211110  013689999999999988888887     8889999999


Q ss_pred             ccCCcccccCC-CCccCc---CCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecC
Q 048006          516 LENNSFSGRIP-DSMGFL---QNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS  591 (833)
Q Consensus       516 Ls~N~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~  591 (833)
                      +++|.+  .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|++++.+|..+. .+++|++|++++
T Consensus       283 l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~  357 (520)
T 2z7x_B          283 VVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQM  357 (520)
T ss_dssp             EEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCS
T ss_pred             ccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccC
Confidence            999988  444 334443   67999999999887432  136788999999999999877887776 689999999999


Q ss_pred             Ccccc--cccccccCCCCCCEEeccCCcCcccCCcc-ccccccccccCCCCcccccceEEeeccCcchhccccCcccEEE
Q 048006          592 NKFHG--KIPFQLCQLAFLQVLDLSLNNISGKIPKC-FNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLE  668 (833)
Q Consensus       592 N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  668 (833)
                      |++++  .+|..+..+++|++|++++|++.+.+|.. +..+++|                                +.|+
T Consensus       358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L--------------------------------~~L~  405 (520)
T 2z7x_B          358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL--------------------------------LSLN  405 (520)
T ss_dssp             SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC--------------------------------CEEE
T ss_pred             CccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC--------------------------------CEEE
Confidence            99986  56677889999999999999998756543 5544444                                8999


Q ss_pred             ccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCcc-ccCCCCCCEEECcCCcCc
Q 048006          669 LSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSS-LSQLSGLSVMDLSYNNLS  747 (833)
Q Consensus       669 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~  747 (833)
                      +++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|++|+|++|++++ +|.. +..+++|++|++++|+++
T Consensus       406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCc
Confidence            999999887776654  78999999999999 788888899999999999999995 5554 889999999999999999


Q ss_pred             cCCCCc
Q 048006          748 GKIPTV  753 (833)
Q Consensus       748 g~ip~~  753 (833)
                      |.++..
T Consensus       482 c~c~~~  487 (520)
T 2z7x_B          482 CSCPRI  487 (520)
T ss_dssp             CCHHHH
T ss_pred             ccCCch
Confidence            987743

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-44  Score=411.35  Aligned_cols=461  Identities=20%  Similarity=0.197  Sum_probs=292.6

Q ss_pred             EEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCcccccee
Q 048006           62 LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL  141 (833)
Q Consensus        62 ~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  141 (833)
                      .+|+++     +.++ .+|..+.  ++|++|+|++|.+++. .|..|..+++|++|+|++|.+.+..|..|+++++|++|
T Consensus         4 ~l~ls~-----n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            4 LVDRSK-----NGLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL   74 (520)
T ss_dssp             EEECTT-----SCCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred             eEecCC-----CCcc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence            577887     5666 4666665  7899999999998875 66788889999999999999887778888899999999


Q ss_pred             cccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCC--CEE
Q 048006          142 DLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSL--ETL  219 (833)
Q Consensus       142 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L--~~L  219 (833)
                      +|++|.+..   ++.. .+++|++|++++|.+++. .+|..++++++|++|++++|.+.+.     .+.. +++|  ++|
T Consensus        75 ~Ls~N~l~~---lp~~-~l~~L~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~-l~~L~L~~L  143 (520)
T 2z7x_B           75 DLSHNKLVK---ISCH-PTVNLKHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEKS-----SVLP-IAHLNISKV  143 (520)
T ss_dssp             ECCSSCCCE---EECC-CCCCCSEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCGG-----GGGG-GTTSCEEEE
T ss_pred             ecCCCceee---cCcc-ccCCccEEeccCCccccc-cchhhhccCCcceEEEecCcccchh-----hccc-cccceeeEE
Confidence            999988753   2222 788888888888888764 2456788888888888888887652     2222 2666  888


Q ss_pred             EccCCcC--CCCCCCcccccccCCcEEEccCccccccccc-cccCCCCCcEEECcCCc-------ccccccccccCCCCC
Q 048006          220 VLSDNNL--TSSIYPWLPNISSIFISIDLGFNQLQGSIPE-SFQHMVYLEHLRLSFNE-------LEGGIPKFFGNMCSL  289 (833)
Q Consensus       220 ~Ls~n~l--~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~-------l~~~~p~~l~~l~~L  289 (833)
                      ++++|.+  .+..|..+..+......+++++|.+.+.++. .+..+++|+.|++++|.       +.+.+| .++.+++|
T Consensus       144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L  222 (520)
T 2z7x_B          144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKL  222 (520)
T ss_dssp             EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTC
T ss_pred             EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccch
Confidence            8888877  6666776666553244566777776654443 45566677777777665       554444 56666666


Q ss_pred             cEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccE
Q 048006          290 ITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLII  369 (833)
Q Consensus       290 ~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  369 (833)
                      ++|++++|.+++..+..+...                           ...++|++|++++|.+.+              
T Consensus       223 ~~L~l~~~~l~~~~~~~~~~~---------------------------~~~~~L~~L~l~~n~l~~--------------  261 (520)
T 2z7x_B          223 SNLTLNNIETTWNSFIRILQL---------------------------VWHTTVWYFSISNVKLQG--------------  261 (520)
T ss_dssp             CEEEEEEEEEEHHHHHHHHHH---------------------------HHTSSCSEEEEEEEEEES--------------
T ss_pred             hhccccccccCHHHHHHHHHH---------------------------hhhCcccEEEeecccccC--------------
Confidence            666666666654433222110                           012355555555555443              


Q ss_pred             EEccCccCCCCCChhh-----cccccccEEeecCCccccccc-hhHHhhcccccEEEcccccccccCCccccccCCCCCc
Q 048006          370 ISLSSCKIGPHFPKWL-----QTQNQIELLDISNTGISDTIP-DWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPG  443 (833)
Q Consensus       370 L~L~~~~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~  443 (833)
                                .+|.++     ..+++|+.+++++|.+  .+| ..+.....+                            
T Consensus       262 ----------~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~----------------------------  301 (520)
T 2z7x_B          262 ----------QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSN----------------------------  301 (520)
T ss_dssp             ----------CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHT----------------------------
T ss_pred             ----------ccccchhhcccccCceeEeccccccce--ecchhhhhccccc----------------------------
Confidence                      344444     5667777777777766  334 333332110                            


Q ss_pred             eecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccc
Q 048006          444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSG  523 (833)
Q Consensus       444 l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  523 (833)
                                                               .+|+.|++++|.+....  .+..+++|++|++++|++++
T Consensus       302 -----------------------------------------~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~  338 (520)
T 2z7x_B          302 -----------------------------------------MNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTD  338 (520)
T ss_dssp             -----------------------------------------CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred             -----------------------------------------CceeEEEcCCCcccccc--chhhCCcccEEEeECCccCh
Confidence                                                     23444444444433211  11345555666666666655


Q ss_pred             cCCCCccCcCCccEEEcccCcCcc--ccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccccccc
Q 048006          524 RIPDSMGFLQNIQTLSLHNNRLTG--ELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ  601 (833)
Q Consensus       524 ~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~  601 (833)
                      .+|..++.+++|++|++++|++++  .+|..+..+++|++|++++|++.+.+|...                        
T Consensus       339 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~------------------------  394 (520)
T 2z7x_B          339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD------------------------  394 (520)
T ss_dssp             TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS------------------------
T ss_pred             hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch------------------------
Confidence            555555556666666666666654  334445555666666666665554344432                        


Q ss_pred             ccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchh
Q 048006          602 LCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEE  681 (833)
Q Consensus       602 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  681 (833)
                      +..+++|+.|++++|++++..|..+.  +                                +|+.|++++|+++ .+|..
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~--------------------------------~L~~L~Ls~N~l~-~ip~~  439 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFRCLP--P--------------------------------RIKVLDLHSNKIK-SIPKQ  439 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGGSCC--T--------------------------------TCCEEECCSSCCC-CCCGG
T ss_pred             hccCccCCEEECcCCCCCcchhhhhc--c--------------------------------cCCEEECCCCccc-ccchh
Confidence            33445555555555555544443321  1                                2377777777777 67777


Q ss_pred             hhcccCCcEEECCCccccccCCcc-cCCCCCCCEEeCCCCcCcccCC
Q 048006          682 IMDLVGLVALNLSKNHLTGQISPK-IGQLKSLDFLDLSRNQLVGGIP  727 (833)
Q Consensus       682 l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p  727 (833)
                      +..+++|++|+|++|++++ +|.. +..+++|+.|++++|++++..+
T Consensus       440 ~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          440 VVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            7788889999999999884 5554 8889999999999999886543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.5e-45  Score=424.42  Aligned_cols=446  Identities=18%  Similarity=0.244  Sum_probs=325.0

Q ss_pred             CcEEEccCccccccccccccCCCCCcEEECcCCccc------c------cccccccCCCCCcEEEccCCCCCchhhHHHh
Q 048006          241 FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELE------G------GIPKFFGNMCSLITLNLSNNKLSGQLSEIIQ  308 (833)
Q Consensus       241 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~------~------~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~  308 (833)
                      ++.|+|+++.+.|.+|.+++++++|++|+|++|.+.      +      .+|...  +..|+ +++++|.+.+.+|..+.
T Consensus        83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSC
T ss_pred             EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHH
Confidence            667777777777777777777777777777777651      1      223222  34555 66777777666665444


Q ss_pred             hcCC---------c----cccCCccEEEc--ccccccccChhhhcCCCCCCEEECcCCccccc-----------------
Q 048006          309 NLSS---------G----CLENSLKSLYL--ENSLTGVISESFFSNISNLKELHLANNPLVLK-----------------  356 (833)
Q Consensus       309 ~l~~---------~----~~~~~L~~L~L--~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~-----------------  356 (833)
                      .+..         .    .....++.+.+  .+|.+..+|. .|+++++|++|++++|.+++.                 
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCH-HHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence            2110         0    00002333444  2455555887 589999999999999999885                 


Q ss_pred             cCCCcc--CCccccEEEccCccCCCCCChhhcccccccEEeecCCc-ccc-ccchhHHhh-----cccccEEEccccccc
Q 048006          357 LSHDWV--PPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTG-ISD-TIPDWFWNL-----SNKFSFLDLASNQIK  427 (833)
Q Consensus       357 ~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~-~~~~~~~~~-----~~~L~~L~L~~n~l~  427 (833)
                      +|..+.  .+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+     .++|++|++++|+++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            788888  89999999999999999999999999999999999998 888 788888765     246777777777776


Q ss_pred             ccCCc--cccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcc
Q 048006          428 GKLPN--LSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCW  505 (833)
Q Consensus       428 ~~~p~--~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  505 (833)
                       .+|.  . ..                                              .+++|++|++++|.++|.+| .|
T Consensus       319 -~ip~~~~-l~----------------------------------------------~l~~L~~L~L~~N~l~g~ip-~~  349 (636)
T 4eco_A          319 -TFPVETS-LQ----------------------------------------------KMKKLGMLECLYNQLEGKLP-AF  349 (636)
T ss_dssp             -SCCCHHH-HT----------------------------------------------TCTTCCEEECCSCCCEEECC-CC
T ss_pred             -ccCchhh-hc----------------------------------------------cCCCCCEEeCcCCcCccchh-hh
Confidence             4443  1 01                                              13667777777777776666 67


Q ss_pred             cCCCCCcEEEccCCcccccCCCCccCcCC-ccEEEcccCcCccccCccccCCC--CCcEeccCCCccCCCCCcchhh---
Q 048006          506 WTFDSLVILNLENNSFSGRIPDSMGFLQN-IQTLSLHNNRLTGELSSSFRNCS--QLRLLDLGKNALYGEIPTWMGE---  579 (833)
Q Consensus       506 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~---  579 (833)
                      ..+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++  +|++|++++|++.+.+|..+..   
T Consensus       350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~  427 (636)
T 4eco_A          350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP  427 (636)
T ss_dssp             EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred             CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence            77777777777777777 66666777777 777777777777 5666665544  6777777777777666655430   


Q ss_pred             ---cCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccc-cccccccccCCCCcccccceEEeeccCcc
Q 048006          580 ---SLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCF-NNFTAMTQERSSDPTIKDKLMLTWKGSER  655 (833)
Q Consensus       580 ---~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  655 (833)
                         .+++|++|++++|+++...+..+..+++|+.|++++|+++ .+|..+ .....                        
T Consensus       428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~------------------------  482 (636)
T 4eco_A          428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE------------------------  482 (636)
T ss_dssp             SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE------------------------
T ss_pred             ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc------------------------
Confidence               2567888888888877433334556788888888888887 444432 21110                        


Q ss_pred             hhccccCcccEEEccCCcCCCCCchhhh--cccCCcEEECCCccccccCCcccCCCCCCCEEeC------CCCcCcccCC
Q 048006          656 EYRSTLGLVKSLELSNNNLNGAVPEEIM--DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDL------SRNQLVGGIP  727 (833)
Q Consensus       656 ~~~~~~~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p  727 (833)
                       ....+++|+.|+|++|+++ .+|..+.  .+++|++|+|++|++++ +|..+..+++|+.|+|      ++|++.+.+|
T Consensus       483 -~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          483 -NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             -ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred             -cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence             0112335699999999999 7888887  99999999999999997 8999999999999999      5688999999


Q ss_pred             ccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCC
Q 048006          728 SSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELC  771 (833)
Q Consensus       728 ~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc  771 (833)
                      ..+..+++|++|++++|++ +.+|... ...+..+++.+||..|
T Consensus       560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          560 EGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNIS  601 (636)
T ss_dssp             TTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCE
T ss_pred             HHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCcc
Confidence            9999999999999999999 7888753 3778888999999987

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.1e-43  Score=413.67  Aligned_cols=512  Identities=20%  Similarity=0.177  Sum_probs=321.4

Q ss_pred             CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEE
Q 048006          214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN  293 (833)
Q Consensus       214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  293 (833)
                      +++++|+|++|++++..+.+|.++++ |++|+|++|+|++..|.+|.++++|++|+|++|++++..+.+|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~-L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTT-CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCC-CCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            46677777777776665666666666 67777777776666666666677777777777776665556666677777777


Q ss_pred             ccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccC-hhhhcCCCCCCEEECcCCccccccCCCccCCcc----cc
Q 048006          294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVIS-ESFFSNISNLKELHLANNPLVLKLSHDWVPPFQ----LI  368 (833)
Q Consensus       294 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~----L~  368 (833)
                      +++|++++..+..|++++      +|++|++++|.+..++ +..+..+++|++|++++|++.+..+..+..+.+    ..
T Consensus       131 Ls~N~l~~l~~~~~~~L~------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~  204 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  204 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCT------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred             CCCCcCCCCChhhhhcCc------ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence            777766666555566666      6666666555554432 234566666666666666666655555544332    23


Q ss_pred             EEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEccccccccc--CCcc---ccccCCCCCc
Q 048006          369 IISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGK--LPNL---SSRFGTSNPG  443 (833)
Q Consensus       369 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~p~~---~~~~~~~l~~  443 (833)
                      .++++.|.+....+..+. ...++.+++.+|......+.........++...+..+.....  +...   .......+..
T Consensus       205 ~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~  283 (635)
T 4g8a_A          205 SLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI  283 (635)
T ss_dssp             EEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred             hhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence            455666666544333332 233455666665544333222222222444444332222111  0000   0000111111


Q ss_pred             eecccCccc----ccCC--CCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEcc
Q 048006          444 IDISSNHFE----GLIP--PLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLE  517 (833)
Q Consensus       444 l~l~~n~l~----~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls  517 (833)
                      .++..+...    +...  ....+++.+.+.++.+........   ...++.|++++|.+....+   ..+..|+.+++.
T Consensus       284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~  357 (635)
T 4g8a_A          284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPT---LKLKSLKRLTFT  357 (635)
T ss_dssp             EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGS---CCCCSEEEEESCEESSCCC---CBCTTCCEEEEE
T ss_pred             hhhhhhhhcccccchhhhhhhhccccccccccccccccccccc---chhhhhhhcccccccCcCc---ccchhhhhcccc
Confidence            222211111    1111  113455566666665544332211   3567777777777664433   234566777777


Q ss_pred             CCcccccCCCCccCcCCccEEEcccCcCc--cccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccc
Q 048006          518 NNSFSGRIPDSMGFLQNIQTLSLHNNRLT--GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH  595 (833)
Q Consensus       518 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~  595 (833)
                      .|.+....  ....+++|+.|++++|.+.  +..+..+..+.+|+++++..|.+. .++..+. .+++|+.++++.|...
T Consensus       358 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~  433 (635)
T 4g8a_A          358 SNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLK  433 (635)
T ss_dssp             SCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCT-TCTTCCEEECTTSEEE
T ss_pred             cccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccccc-ccccccchhhhhcccc
Confidence            77665332  2345677777777777765  334555566677777777777765 3343333 4677777777777665


Q ss_pred             cccc-ccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcC
Q 048006          596 GKIP-FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNL  674 (833)
Q Consensus       596 ~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  674 (833)
                      ...+ ..+..+++++.+++++|.+.+..|..+..++.+                                +.|++++|.+
T Consensus       434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L--------------------------------~~L~Ls~N~~  481 (635)
T 4g8a_A          434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL--------------------------------EVLKMAGNSF  481 (635)
T ss_dssp             STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC--------------------------------CEEECTTCEE
T ss_pred             ccccccccccccccccccccccccccccccccccchhh--------------------------------hhhhhhhccc
Confidence            4433 346667777777777777776666666555544                                9999999985


Q ss_pred             C-CCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006          675 N-GAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       675 ~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  753 (833)
                      . +..|..|..+++|++|+|++|++++.+|..|+++++|++|+|++|+|++..|..|..+++|++||+++|++++.+|..
T Consensus       482 ~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  561 (635)
T 4g8a_A          482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  561 (635)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred             ccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence            4 457788999999999999999999999999999999999999999999999999999999999999999999998865


Q ss_pred             -ccc-CccccccccCCCCCCCCCC
Q 048006          754 -TQL-QSFNDTVYAGNPELCGLPL  775 (833)
Q Consensus       754 -~~~-~~l~~~~~~gn~~lc~~~~  775 (833)
                       ..+ ..+..+.+.||||.|+|.+
T Consensus       562 l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          562 LQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             TTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             HHhhhCcCCEEEeeCCCCcccCCc
Confidence             233 5678888999999999974

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.3e-44  Score=421.80  Aligned_cols=378  Identities=17%  Similarity=0.242  Sum_probs=242.0

Q ss_pred             CcccccccccccCCCCCcEEEccCCCCCch-hhHHHhhcCCccccCCccEEEcccccccccChhh-hcCCCCCCEEECcC
Q 048006          273 NELEGGIPKFFGNMCSLITLNLSNNKLSGQ-LSEIIQNLSSGCLENSLKSLYLENSLTGVISESF-FSNISNLKELHLAN  350 (833)
Q Consensus       273 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~-~~~l~~L~~L~L~~  350 (833)
                      |++++ +|..|+++++|++|+|++|++++. ++..+....             .+...+.+|... |.++++|++|+|++
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s-------------~n~~~g~iP~~l~f~~L~~L~~L~Ls~  500 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN-------------SDYAKQYENEELSWSNLKDLTDVELYN  500 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT-------------SHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccc-------------cccccccCChhhhhccCCCCCEEECcC
Confidence            55555 556666666666666666666551 110000000             011112255532 33788888888888


Q ss_pred             CccccccCCCccCCccccEEEccCcc-CCC-CCChhhcccc-------cccEEeecCCccccccch--hHHhhcccccEE
Q 048006          351 NPLVLKLSHDWVPPFQLIIISLSSCK-IGP-HFPKWLQTQN-------QIELLDISNTGISDTIPD--WFWNLSNKFSFL  419 (833)
Q Consensus       351 n~l~~~~~~~~~~~~~L~~L~L~~~~-l~~-~~~~~l~~l~-------~L~~L~Ls~n~i~~~~~~--~~~~~~~~L~~L  419 (833)
                      |.+.+..|..+..+++|+.|++++|. +++ .+|..+..++       +|+.|++++|.++ .+|.  .+..+. +|++|
T Consensus       501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~-~L~~L  578 (876)
T 4ecn_A          501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV-KLGLL  578 (876)
T ss_dssp             CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT-TCCEE
T ss_pred             CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC-CCCEE
Confidence            88888778778888888888888887 776 6777776665       9999999999998 6666  554432 44444


Q ss_pred             EcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcC
Q 048006          420 DLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSG  499 (833)
Q Consensus       420 ~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~  499 (833)
                      ++++|.+                                                                       + 
T Consensus       579 ~Ls~N~l-----------------------------------------------------------------------~-  586 (876)
T 4ecn_A          579 DCVHNKV-----------------------------------------------------------------------R-  586 (876)
T ss_dssp             ECTTSCC-----------------------------------------------------------------------C-
T ss_pred             ECCCCCc-----------------------------------------------------------------------c-
Confidence            4444444                                                                       3 


Q ss_pred             CCCCcccCCCCCcEEEccCCcccccCCCCccCcCC-ccEEEcccCcCccccCccccCCCC--CcEeccCCCccCCCCCcc
Q 048006          500 KLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQN-IQTLSLHNNRLTGELSSSFRNCSQ--LRLLDLGKNALYGEIPTW  576 (833)
Q Consensus       500 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~p~~  576 (833)
                      .+| .|..+++|+.|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++.  |+.|++++|++.+.+|..
T Consensus       587 ~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l  663 (876)
T 4ecn_A          587 HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI  663 (876)
T ss_dssp             BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred             cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccc
Confidence            333 3444444444444444444 34444444444 444444444444 33444433332  555555555554433321


Q ss_pred             h---h-hcCCccceEEecCCcccccccccc-cCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeec
Q 048006          577 M---G-ESLSNLIVLSLKSNKFHGKIPFQL-CQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWK  651 (833)
Q Consensus       577 ~---~-~~l~~L~~L~L~~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~  651 (833)
                      .   . ..+++|+.|++++|.++ .+|..+ ..+++|+.|+|++|++. .+|..+.....                    
T Consensus       664 ~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~--------------------  721 (876)
T 4ecn_A          664 SCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD--------------------  721 (876)
T ss_dssp             SSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT--------------------
T ss_pred             hhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc--------------------
Confidence            1   0 01346666666666666 344333 36677777777777776 44443322110                    


Q ss_pred             cCcchhccccCcccEEEccCCcCCCCCchhhh--cccCCcEEECCCccccccCCcccCCCCCCCEEeCCC------CcCc
Q 048006          652 GSEREYRSTLGLVKSLELSNNNLNGAVPEEIM--DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSR------NQLV  723 (833)
Q Consensus       652 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~------N~l~  723 (833)
                          .....+++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.
T Consensus       722 ----~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~  795 (876)
T 4ecn_A          722 ----GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL  795 (876)
T ss_dssp             ----SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred             ----ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence                00012345699999999999 7898887  99999999999999997 799999999999999977      8899


Q ss_pred             ccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCC
Q 048006          724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELC  771 (833)
Q Consensus       724 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc  771 (833)
                      +.+|..+..+++|+.|++++|++ +.+|.. ....+..+++.+||...
T Consensus       796 ~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          796 RQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS  841 (876)
T ss_dssp             CCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred             ccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence            99999999999999999999999 788876 33678888899998754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-42  Score=398.28  Aligned_cols=462  Identities=21%  Similarity=0.208  Sum_probs=347.6

Q ss_pred             CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEE
Q 048006          214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN  293 (833)
Q Consensus       214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  293 (833)
                      ...+++++++|.+++ +|..++  ++ +++|++++|.+++..|..|.++++|++|++++|++++..|..|..+++|++|+
T Consensus        31 ~~~~~l~ls~~~L~~-ip~~~~--~~-L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           31 ELESMVDYSNRNLTH-VPKDLP--PR-TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             --CCEEECTTSCCCS-CCTTSC--TT-CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCCCcc-CCCCCC--CC-cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            455899999999986 676664  45 99999999999998888999999999999999999998899999999999999


Q ss_pred             ccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccCh-hhhcCCCCCCEEECcCCccccccCCCccCCccc--cEE
Q 048006          294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISE-SFFSNISNLKELHLANNPLVLKLSHDWVPPFQL--III  370 (833)
Q Consensus       294 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L  370 (833)
                      +++|+++. +|..  .++      +|++|++++|.+..++. ..|.++++|++|++++|.+...   .+..+.+|  ++|
T Consensus       107 Ls~N~l~~-lp~~--~l~------~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L  174 (562)
T 3a79_B          107 VSHNRLQN-ISCC--PMA------SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCI  174 (562)
T ss_dssp             CTTSCCCE-ECSC--CCT------TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEE
T ss_pred             CCCCcCCc-cCcc--ccc------cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEE
Confidence            99999984 4443  566      89999998888877663 5788899999999999888753   44444555  888


Q ss_pred             EccCccC--CCCCChhhcccc-cccEEeecCCccccccchhHHhhcccccEEEcccccc-----cccCCccccccCCCCC
Q 048006          371 SLSSCKI--GPHFPKWLQTQN-QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQI-----KGKLPNLSSRFGTSNP  442 (833)
Q Consensus       371 ~L~~~~l--~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l-----~~~~p~~~~~~~~~l~  442 (833)
                      ++++|.+  ++..|..+..+. ..-.+++++|.+.+.++.......++|+.+++++|..     .+.++..  ..     
T Consensus       175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l--~~-----  247 (562)
T 3a79_B          175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL--TR-----  247 (562)
T ss_dssp             EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHH--HS-----
T ss_pred             EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHH--hc-----
Confidence            8888888  777777776654 1224577777776666555444445677777777641     1111111  11     


Q ss_pred             ceecccCcccccCCCCCCCCceeecCCCcccccccc-c-ccccCCcccEEEcCCCcCcCCCCCcc-----cCCCCCcEEE
Q 048006          443 GIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISF-L-CSISGSKLTYVDLSSNLLSGKLPDCW-----WTFDSLVILN  515 (833)
Q Consensus       443 ~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~~~~L~~L~ls~n~l~~~~~~~~-----~~l~~L~~L~  515 (833)
                                      .+.++.+++.++.+.+.... . .....++|++|++++|.+++.+|..+     ..++.|+.++
T Consensus       248 ----------------l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~  311 (562)
T 3a79_B          248 ----------------GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH  311 (562)
T ss_dssp             ----------------CSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred             ----------------cCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence                            23444455544444332100 0 00113589999999999998888877     6667777777


Q ss_pred             ccCCcccccCC-CCccC---cCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecC
Q 048006          516 LENNSFSGRIP-DSMGF---LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS  591 (833)
Q Consensus       516 Ls~N~l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~  591 (833)
                      ++.|.+  .+| ..+..   ..+|++|++++|.+....  ....+++|++|++++|++++.+|..+. .+++|++|++++
T Consensus       312 ~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~  386 (562)
T 3a79_B          312 VKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQR  386 (562)
T ss_dssp             EEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCS
T ss_pred             ccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCC
Confidence            777766  233 22222   257999999999986432  126889999999999999987887776 699999999999


Q ss_pred             Ccccc--cccccccCCCCCCEEeccCCcCcccCCc-cccccccccccCCCCcccccceEEeeccCcchhccccCcccEEE
Q 048006          592 NKFHG--KIPFQLCQLAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLE  668 (833)
Q Consensus       592 N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  668 (833)
                      |++++  .+|..+..+++|+.|++++|++.+.+|. .+..+++|                                +.|+
T Consensus       387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L--------------------------------~~L~  434 (562)
T 3a79_B          387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI--------------------------------LVLN  434 (562)
T ss_dssp             SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC--------------------------------CEEE
T ss_pred             CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC--------------------------------CEEE
Confidence            99986  3456789999999999999999875654 35555544                                9999


Q ss_pred             ccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCcc-ccCCCCCCEEECcCCcCc
Q 048006          669 LSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSS-LSQLSGLSVMDLSYNNLS  747 (833)
Q Consensus       669 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~  747 (833)
                      +++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|+.|+|++|++++ +|.. +..+++|+.|++++|++.
T Consensus       435 l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          435 LSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBC
T ss_pred             CCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcC
Confidence            999999887776554  78999999999999 788888899999999999999995 5555 999999999999999999


Q ss_pred             cCCCCccc
Q 048006          748 GKIPTVTQ  755 (833)
Q Consensus       748 g~ip~~~~  755 (833)
                      |.+|....
T Consensus       511 c~c~~~~~  518 (562)
T 3a79_B          511 CTCPGIRY  518 (562)
T ss_dssp             CCHHHHHH
T ss_pred             CCcchHHH
Confidence            98886543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-41  Score=390.06  Aligned_cols=464  Identities=20%  Similarity=0.202  Sum_probs=265.3

Q ss_pred             EEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccce
Q 048006           61 ILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQH  140 (833)
Q Consensus        61 ~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  140 (833)
                      +++++++     +.+++ +|..+.  ++|++|+|++|.+++. .|..|..+++|++|+|++|.+++..|..|.++++|++
T Consensus        34 ~~l~ls~-----~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           34 SMVDYSN-----RNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             CEEECTT-----SCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             cEEEcCC-----CCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            6788888     56664 665554  7899999999999875 6678999999999999999999888888999999999


Q ss_pred             ecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCC--CE
Q 048006          141 LDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSL--ET  218 (833)
Q Consensus       141 L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L--~~  218 (833)
                      ||+++|.+...  +..  .+++|++|++++|.+++++ +|..++++++|++|++++|.+.+...   ...   ++|  +.
T Consensus       105 L~Ls~N~l~~l--p~~--~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l---~~L~L~~  173 (562)
T 3a79_B          105 LDVSHNRLQNI--SCC--PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQLDL---LPV---AHLHLSC  173 (562)
T ss_dssp             EECTTSCCCEE--CSC--CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTTTT---GGG---TTSCEEE
T ss_pred             EECCCCcCCcc--Ccc--ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccccCch---hhh---hhceeeE
Confidence            99999988632  222  7888888888888887642 34577888888888888887765311   111   444  77


Q ss_pred             EEccCCcC--CCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccC
Q 048006          219 LVLSDNNL--TSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSN  296 (833)
Q Consensus       219 L~Ls~n~l--~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  296 (833)
                      |++++|.+  ++..|..+..+......++++.|.+.+.++.                       ..+..+++|+.+++++
T Consensus       174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~-----------------------~~~~~l~~L~~L~l~~  230 (562)
T 3a79_B          174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN-----------------------MSVNALGHLQLSNIKL  230 (562)
T ss_dssp             EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCE-----------------------EEESSEEEEEEEEEEC
T ss_pred             EEeecccccccccCcccccccCcceEEEEecCccchhhhhh-----------------------hcccccceEEEecccc
Confidence            77777776  6666665555432122345555554443332                       1233444555555555


Q ss_pred             CCCCc-hhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCC---CccCCccccEEEc
Q 048006          297 NKLSG-QLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSH---DWVPPFQLIIISL  372 (833)
Q Consensus       297 n~l~~-~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~L  372 (833)
                      |+... .++..+.                           .|..+++|+.++++++.+.+....   ......+|++|++
T Consensus       231 n~~~~~~l~~~~~---------------------------~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l  283 (562)
T 3a79_B          231 NDENCQRLMTFLS---------------------------ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI  283 (562)
T ss_dssp             CSTTHHHHHHHHH---------------------------HHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred             cccccchHHHHHH---------------------------HHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence            53110 0011000                           122333333333333222211000   0000113333333


Q ss_pred             cCccCCCCCChhh-----cccccccEEeecCCccccccc-hhHHhhcccccEEEcccccccccCCccccccCCCCCceec
Q 048006          373 SSCKIGPHFPKWL-----QTQNQIELLDISNTGISDTIP-DWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDI  446 (833)
Q Consensus       373 ~~~~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l  446 (833)
                      ++|.+.+.+|..+     ..++.|+.++++.+.+  .+| ..+.....                                
T Consensus       284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~--------------------------------  329 (562)
T 3a79_B          284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA--------------------------------  329 (562)
T ss_dssp             EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH--------------------------------
T ss_pred             eccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc--------------------------------
Confidence            3333333333333     3333333333333333  122 11111100                                


Q ss_pred             ccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCC
Q 048006          447 SSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIP  526 (833)
Q Consensus       447 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  526 (833)
                                                           ..+|++|++++|.+....  ....+++|++|++++|.+++.+|
T Consensus       330 -------------------------------------~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~  370 (562)
T 3a79_B          330 -------------------------------------EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVF  370 (562)
T ss_dssp             -------------------------------------TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTT
T ss_pred             -------------------------------------cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchh
Confidence                                                 133455555555443211  11345555666666666555555


Q ss_pred             CCccCcCCccEEEcccCcCccc--cCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccC
Q 048006          527 DSMGFLQNIQTLSLHNNRLTGE--LSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ  604 (833)
Q Consensus       527 ~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~  604 (833)
                      ..+..+++|++|++++|++++.  +|..+..+++|++|++++|++.+.+|...                        +..
T Consensus       371 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~------------------------~~~  426 (562)
T 3a79_B          371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT------------------------CAW  426 (562)
T ss_dssp             TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC------------------------CCC
T ss_pred             hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh------------------------hcC
Confidence            5555555666666666655542  23345555555555555555554344433                        344


Q ss_pred             CCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhc
Q 048006          605 LAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD  684 (833)
Q Consensus       605 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~  684 (833)
                      +++|+.|++++|++++..|..+.  +                                +|+.|++++|+++ .+|..+..
T Consensus       427 l~~L~~L~l~~n~l~~~~~~~l~--~--------------------------------~L~~L~L~~N~l~-~ip~~~~~  471 (562)
T 3a79_B          427 AESILVLNLSSNMLTGSVFRCLP--P--------------------------------KVKVLDLHNNRIM-SIPKDVTH  471 (562)
T ss_dssp             CTTCCEEECCSSCCCGGGGSSCC--T--------------------------------TCSEEECCSSCCC-CCCTTTTS
T ss_pred             cccCCEEECCCCCCCcchhhhhc--C--------------------------------cCCEEECCCCcCc-ccChhhcC
Confidence            55555555555555544443321  1                                2377777777777 67777778


Q ss_pred             ccCCcEEECCCccccccCCcc-cCCCCCCCEEeCCCCcCcccCC
Q 048006          685 LVGLVALNLSKNHLTGQISPK-IGQLKSLDFLDLSRNQLVGGIP  727 (833)
Q Consensus       685 l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p  727 (833)
                      +++|++|+|++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus       472 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          472 LQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             SCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            888999999999998 45555 8889999999999999987554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.4e-40  Score=368.64  Aligned_cols=266  Identities=19%  Similarity=0.218  Sum_probs=152.9

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCC
Q 048006           81 PALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHL  160 (833)
Q Consensus        81 ~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l  160 (833)
                      |.-.+.++|++|++++|.+ + .+|+.++++++|++|++++|.+.|.+|.+++++++|+++++++|..            
T Consensus         5 p~~~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------   70 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------   70 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred             ccccccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence            4445678999999999999 4 4999999999999999999999999999999999999999988753            


Q ss_pred             CCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccC
Q 048006          161 SYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI  240 (833)
Q Consensus       161 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~  240 (833)
                      .++++|++++|.+++++.+      .++|++|++++|.+.+ +|..      .++|++|++++|++++. +...   ++ 
T Consensus        71 ~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~-lp~~------~~~L~~L~l~~n~l~~l-~~~~---~~-  132 (454)
T 1jl5_A           71 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTE-LPEL------PQSLKSLLVDNNNLKAL-SDLP---PL-  132 (454)
T ss_dssp             HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSS-CCCC------CTTCCEEECCSSCCSCC-CSCC---TT-
T ss_pred             cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCc-cccc------cCCCcEEECCCCccCcc-cCCC---CC-
Confidence            4678888888888775432      3678888888888776 4431      26777777777777642 2110   23 


Q ss_pred             CcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCcc
Q 048006          241 FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK  320 (833)
Q Consensus       241 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~  320 (833)
                      |++|++++|.+++ +| .|+++++|++|++++|++++ +|..+   ++|++|++++|++++                   
T Consensus       133 L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-------------------  187 (454)
T 1jl5_A          133 LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-------------------  187 (454)
T ss_dssp             CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-------------------
T ss_pred             CCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-------------------
Confidence            6677777777665 45 46666777777777776664 44332   366666666666554                   


Q ss_pred             EEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCc
Q 048006          321 SLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTG  400 (833)
Q Consensus       321 ~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~  400 (833)
                                 +|  .|.++++|++|++++|.+.+.. .   ...+|++|++++|.+. .+|. +..+++|++|++++|+
T Consensus       188 -----------l~--~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          188 -----------LP--ELQNLPFLTAIYADNNSLKKLP-D---LPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL  248 (454)
T ss_dssp             -----------CC--CCTTCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC
T ss_pred             -----------Cc--cccCCCCCCEEECCCCcCCcCC-C---CcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc
Confidence                       33  2556667777777777665421 1   1135666666666665 4442 5666666666666666


Q ss_pred             cccccchhHHhhcccccEEEccccccc
Q 048006          401 ISDTIPDWFWNLSNKFSFLDLASNQIK  427 (833)
Q Consensus       401 i~~~~~~~~~~~~~~L~~L~L~~n~l~  427 (833)
                      +++ +|..    .++|++|++++|+++
T Consensus       249 l~~-l~~~----~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          249 LKT-LPDL----PPSLEALNVRDNYLT  270 (454)
T ss_dssp             CSS-CCSC----CTTCCEEECCSSCCS
T ss_pred             CCc-cccc----ccccCEEECCCCccc
Confidence            653 2221    124555555555444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.2e-39  Score=360.45  Aligned_cols=389  Identities=22%  Similarity=0.219  Sum_probs=254.3

Q ss_pred             CEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccc-cccccCCCCCcEEEcc
Q 048006          217 ETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGI-PKFFGNMCSLITLNLS  295 (833)
Q Consensus       217 ~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls  295 (833)
                      +.++.+++.++. +|. ++  ++ +++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|..+++|++|+++
T Consensus        13 ~~~~c~~~~l~~-lp~-l~--~~-l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLHQ-VPE-LP--AH-VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCSS-CCC-CC--TT-CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCccc-CCC-CC--Cc-cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            456666666653 333 22  23 677777777777666666777777777777777665433 4456666677777777


Q ss_pred             CCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccC--CCccCCccccEEEcc
Q 048006          296 NNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLS--HDWVPPFQLIIISLS  373 (833)
Q Consensus       296 ~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~L~  373 (833)
                      +|++++..|..                              |.++++|++|++++|.+.+..+  ..+..+++|++|+++
T Consensus        88 ~n~l~~~~~~~------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~  137 (455)
T 3v47_A           88 YNQFLQLETGA------------------------------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR  137 (455)
T ss_dssp             TCTTCEECTTT------------------------------TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECC
T ss_pred             CCccCccChhh------------------------------ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECC
Confidence            66665544433                              4455555555555555554222  124444445555555


Q ss_pred             CccCCCCCChh-hcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCccc
Q 048006          374 SCKIGPHFPKW-LQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFE  452 (833)
Q Consensus       374 ~~~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~  452 (833)
                      +|.+++..|.. +..+++|++|++++|++++..+..+....                                       
T Consensus       138 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~---------------------------------------  178 (455)
T 3v47_A          138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ---------------------------------------  178 (455)
T ss_dssp             SSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT---------------------------------------
T ss_pred             CCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc---------------------------------------
Confidence            55554444443 55555666666666555554444433221                                       


Q ss_pred             ccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCc--------ccCCCCCcEEEccCCccccc
Q 048006          453 GLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDC--------WWTFDSLVILNLENNSFSGR  524 (833)
Q Consensus       453 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~  524 (833)
                                                     ..+|+.+++++|.+.+..+..        +..+++|++|++++|.+++.
T Consensus       179 -------------------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  227 (455)
T 3v47_A          179 -------------------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES  227 (455)
T ss_dssp             -------------------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred             -------------------------------cccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc
Confidence                                           123334444444433322211        22344555555555555554


Q ss_pred             CCCCccCc---CCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchh-hcCCccceEEecCCcccccccc
Q 048006          525 IPDSMGFL---QNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMG-ESLSNLIVLSLKSNKFHGKIPF  600 (833)
Q Consensus       525 ~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~~l~~L~~L~L~~N~l~~~~~~  600 (833)
                      .|..+...   ++|+.|++++|.+.+...              ..+.+.+..+..+. ...++|++|++++|.+.+..|.
T Consensus       228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  293 (455)
T 3v47_A          228 MAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS  293 (455)
T ss_dssp             HHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred             chhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchh
Confidence            44444332   566666666665543211              11111111111111 0246899999999999988899


Q ss_pred             cccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCch
Q 048006          601 QLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPE  680 (833)
Q Consensus       601 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~  680 (833)
                      .+..+++|++|++++|++.+..|..|..+++|                                +.|++++|++++..|.
T Consensus       294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------~~L~Ls~N~l~~~~~~  341 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL--------------------------------LKLNLSQNFLGSIDSR  341 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------------------CEEECCSSCCCEECGG
T ss_pred             hcccCCCCCEEECCCCcccccChhHhcCcccC--------------------------------CEEECCCCccCCcChh
Confidence            99999999999999999998888888777766                                8999999999988899


Q ss_pred             hhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCcccc
Q 048006          681 EIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQL  756 (833)
Q Consensus       681 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  756 (833)
                      .+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus       342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            9999999999999999999999999999999999999999999887788899999999999999999999975443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.8e-41  Score=353.48  Aligned_cols=294  Identities=29%  Similarity=0.401  Sum_probs=208.1

Q ss_pred             CCCCHHHHHHHHHhhhcCcCCCCCCCCCCCCCCCCCCCc--ccceEecCCC--CcEEEEECCCCCCCCCCcce--ecCcc
Q 048006            9 IRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCK--WTGLRCSNKT--NHVILLDLQPIDFDSFPLRG--TISPA   82 (833)
Q Consensus         9 ~~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~~~~~~l~~--~~~~~   82 (833)
                      +.|.++|++||++||+++.+|. .+++|.   .+.+||.  |.||+|+..+  ++|++|+|++     +.++|  .+|+.
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-----~~l~~~~~~~~~   71 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-----LNLPKPYPIPSS   71 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-----CCCSSCEECCGG
T ss_pred             CCCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC-----CCccCCcccChh
Confidence            3699999999999999998876 789997   4678998  9999998655  8999999999     78888  89999


Q ss_pred             ccCCCCCCEEeCCC-CCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCC
Q 048006           83 LLKLHDLRHLNLSF-NDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLS  161 (833)
Q Consensus        83 l~~l~~L~~L~Ls~-n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~  161 (833)
                      +.++++|++|++++ |.+.+. +|..|+++++|++|+|++|.+++.+|..|.++++|++|++++|.+.. ..+..+++++
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~  149 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLP  149 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCT
T ss_pred             HhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCC
Confidence            99999999999995 899885 89999999999999999999998999999999999999999998864 3344555666


Q ss_pred             CCcEEecCCCCCCCCchhHHhhcCCC-CCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccC
Q 048006          162 YLRYLNLDESNLANSSDWFQVIGKLH-SLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI  240 (833)
Q Consensus       162 ~L~~L~Ls~n~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~  240 (833)
                      +|++|++++|.+++.  +|..++.++ +|++|++++|.                           +++.+|..+..+.  
T Consensus       150 ~L~~L~L~~N~l~~~--~p~~l~~l~~~L~~L~L~~N~---------------------------l~~~~~~~~~~l~--  198 (313)
T 1ogq_A          150 NLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNR---------------------------LTGKIPPTFANLN--  198 (313)
T ss_dssp             TCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSE---------------------------EEEECCGGGGGCC--
T ss_pred             CCCeEECcCCcccCc--CCHHHhhhhhcCcEEECcCCe---------------------------eeccCChHHhCCc--
Confidence            666666666655431  334444444 45555555554                           4444444444442  


Q ss_pred             CcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCcc
Q 048006          241 FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK  320 (833)
Q Consensus       241 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~  320 (833)
                      |++|++++|.+++..|..|..+++|++|++++|++++.+|. +..+++|++|++++|++++.+|..+..++      +|+
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~------~L~  271 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK------FLH  271 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT------TCC
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc------CCC
Confidence            55555555555555555555555555555555555544433 45555555555555555555555555555      555


Q ss_pred             EEEcccccc-cccChhhhcCCCCCCEEECcCCcc
Q 048006          321 SLYLENSLT-GVISESFFSNISNLKELHLANNPL  353 (833)
Q Consensus       321 ~L~L~~~~~-~~i~~~~~~~l~~L~~L~L~~n~l  353 (833)
                      .|++++|.+ +.+|.  ...+++|+.+++++|+.
T Consensus       272 ~L~Ls~N~l~~~ip~--~~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          272 SLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             EEECCSSEEEEECCC--STTGGGSCGGGTCSSSE
T ss_pred             EEECcCCcccccCCC--CccccccChHHhcCCCC
Confidence            555533333 34444  36677788888888873

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.2e-37  Score=348.59  Aligned_cols=367  Identities=22%  Similarity=0.230  Sum_probs=285.6

Q ss_pred             CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccc-cccccCCCCCcEEECcCCcccccccccccCCCCCcEE
Q 048006          214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSI-PESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITL  292 (833)
Q Consensus       214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  292 (833)
                      ++|++|+|++|.+++..|..+.++++ |++|++++|.+.+.+ +..|.++++|++|++++|++++..|..|+++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQD-LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTT-CCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCcc-ccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            56677777777776666666667766 777777777776443 4567777778888888887777777777777788888


Q ss_pred             EccCCCCCchhhHH--HhhcCCccccCCccEEEcccccccccCh-hhhcCCCCCCEEECcCCccccccCCCccCC--ccc
Q 048006          293 NLSNNKLSGQLSEI--IQNLSSGCLENSLKSLYLENSLTGVISE-SFFSNISNLKELHLANNPLVLKLSHDWVPP--FQL  367 (833)
Q Consensus       293 ~Ls~n~l~~~~~~~--l~~l~~~~~~~~L~~L~L~~~~~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~L  367 (833)
                      ++++|++++..+..  +..++      +|++|++++|.+..+.+ ..|.++++|++|++++|.+.+..+..+..+  .++
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L  182 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLT------SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF  182 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCT------TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred             eCCCCCCCccccCcccccCcc------cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence            88888777765554  66676      77777776666665533 347888999999999999888877777665  688


Q ss_pred             cEEEccCccCCCCCChhh--------cccccccEEeecCCccccccchhHHhhc--ccccEEEcccccccccCCcccccc
Q 048006          368 IIISLSSCKIGPHFPKWL--------QTQNQIELLDISNTGISDTIPDWFWNLS--NKFSFLDLASNQIKGKLPNLSSRF  437 (833)
Q Consensus       368 ~~L~L~~~~l~~~~~~~l--------~~l~~L~~L~Ls~n~i~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~p~~~~~~  437 (833)
                      +.+++++|.+.+..+.++        ..+++|++|++++|++++..|..+....  .+++.|++++|.+.+....     
T Consensus       183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----  257 (455)
T 3v47_A          183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-----  257 (455)
T ss_dssp             EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-----
T ss_pred             cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-----
Confidence            999999998887655443        3567899999999999988888887653  4788888888876543111     


Q ss_pred             CCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEcc
Q 048006          438 GTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLE  517 (833)
Q Consensus       438 ~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls  517 (833)
                                .+.+.+..+.             .       ......++|++|++++|.+++..|..|..+++|++|+++
T Consensus       258 ----------~~~~~~~~~~-------------~-------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  307 (455)
T 3v47_A          258 ----------HTNFKDPDNF-------------T-------FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA  307 (455)
T ss_dssp             ----------CCSSCCCCTT-------------T-------TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred             ----------hhhhccCccc-------------c-------cccccccCceEEEecCccccccchhhcccCCCCCEEECC
Confidence                      1111111000             0       000113789999999999999999999999999999999


Q ss_pred             CCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccc
Q 048006          518 NNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGK  597 (833)
Q Consensus       518 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~  597 (833)
                      +|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..|..+. .+++|++|++++|++++.
T Consensus       308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~  386 (455)
T 3v47_A          308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSV  386 (455)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccC
Confidence            9999999899999999999999999999988899999999999999999999866676666 699999999999999987


Q ss_pred             ccccccCCCCCCEEeccCCcCcccCC
Q 048006          598 IPFQLCQLAFLQVLDLSLNNISGKIP  623 (833)
Q Consensus       598 ~~~~l~~l~~L~~L~Ls~N~l~~~~p  623 (833)
                      .+..+..+++|+.|++++|++++..|
T Consensus       387 ~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          387 PDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CHhHhccCCcccEEEccCCCcccCCC
Confidence            77778999999999999999998776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.1e-38  Score=351.02  Aligned_cols=388  Identities=24%  Similarity=0.313  Sum_probs=182.2

Q ss_pred             CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCC-------------cEEECcCCccccccc
Q 048006          214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYL-------------EHLRLSFNELEGGIP  280 (833)
Q Consensus       214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~~p  280 (833)
                      +.|++|++++|.+ +.+|++++++++ |++|++++|.+++.+|..++.+++|             ++|++++|.+++ +|
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~-L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKS-KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP   87 (454)
T ss_dssp             ------------------------CC-HHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred             ccchhhhcccCch-hhCChhHhcccc-hhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence            5556666666665 555656666665 6666666666666666666655554             555555555543 22


Q ss_pred             ccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCC
Q 048006          281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHD  360 (833)
Q Consensus       281 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~  360 (833)
                      ..   .++|++|++++|++++                              +|.    .+++|++|++++|.+.+...  
T Consensus        88 ~~---~~~L~~L~l~~n~l~~------------------------------lp~----~~~~L~~L~l~~n~l~~l~~--  128 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTE------------------------------LPE----LPQSLKSLLVDNNNLKALSD--  128 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSS------------------------------CCC----CCTTCCEEECCSSCCSCCCS--
T ss_pred             CC---cCCCCEEEccCCcCCc------------------------------ccc----ccCCCcEEECCCCccCcccC--
Confidence            21   2345555555555443                              322    12445555555554443211  


Q ss_pred             ccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCC
Q 048006          361 WVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTS  440 (833)
Q Consensus       361 ~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~  440 (833)
                        ..++|++|++++|.+++ +| .+..+++|++|++++|++++ +|..+    .+|++|++++|++++ +|.  ...+++
T Consensus       129 --~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~~--~~~l~~  196 (454)
T 1jl5_A          129 --LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP----PSLEFIAAGNNQLEE-LPE--LQNLPF  196 (454)
T ss_dssp             --CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC----TTCCEEECCSSCCSS-CCC--CTTCTT
T ss_pred             --CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc----ccccEEECcCCcCCc-Ccc--ccCCCC
Confidence              01355555555555554 44 36666666666666666664 33322    257777777776665 332  133334


Q ss_pred             CCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCc
Q 048006          441 NPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNS  520 (833)
Q Consensus       441 l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  520 (833)
                      ++.+++++|.+++ +|..+                         ++|++|++++|.++ .+| .+..+++|++|++++|+
T Consensus       197 L~~L~l~~N~l~~-l~~~~-------------------------~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          197 LTAIYADNNSLKK-LPDLP-------------------------LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNL  248 (454)
T ss_dssp             CCEEECCSSCCSS-CCCCC-------------------------TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCc-CCCCc-------------------------CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCc
Confidence            4444444444433 11111                         35666666666666 444 36666667777777766


Q ss_pred             ccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccc
Q 048006          521 FSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPF  600 (833)
Q Consensus       521 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~  600 (833)
                      +++ +|..   +++|++|++++|++++ +|..   .++|++|++++|++++ +|.    ..++|++|++++|++++. + 
T Consensus       249 l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~-  313 (454)
T 1jl5_A          249 LKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-C-  313 (454)
T ss_dssp             CSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C-
T ss_pred             CCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-c-
Confidence            664 3322   3566777777776664 3332   2566777777777663 332    124667777777776641 1 


Q ss_pred             cccCC-CCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCc
Q 048006          601 QLCQL-AFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP  679 (833)
Q Consensus       601 ~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  679 (833)
                         .+ ++|+.|++++|++++ +|..+                                   ++|+.|++++|+++ .+|
T Consensus       314 ---~~~~~L~~L~Ls~N~l~~-lp~~~-----------------------------------~~L~~L~L~~N~l~-~lp  353 (454)
T 1jl5_A          314 ---DLPPSLEELNVSNNKLIE-LPALP-----------------------------------PRLERLIASFNHLA-EVP  353 (454)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCCCC-----------------------------------TTCCEEECCSSCCS-CCC
T ss_pred             ---CCcCcCCEEECCCCcccc-ccccC-----------------------------------CcCCEEECCCCccc-ccc
Confidence               22 467777777777764 34321                                   22367777777776 355


Q ss_pred             hhhhcccCCcEEECCCccccc--cCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCcc--CCCC
Q 048006          680 EEIMDLVGLVALNLSKNHLTG--QISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG--KIPT  752 (833)
Q Consensus       680 ~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~ip~  752 (833)
                      .   .+++|++|++++|++++  .+|.++..        ++.|.+.+.+|..   +++|++||+++|+++|  .+|.
T Consensus       354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          354 E---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             C---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---------------------------------
T ss_pred             c---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence            4   35677777777777776  55554432        2345566666653   3678888888888887  6664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.3e-36  Score=337.04  Aligned_cols=373  Identities=18%  Similarity=0.149  Sum_probs=248.5

Q ss_pred             CccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccC
Q 048006           80 SPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSH  159 (833)
Q Consensus        80 ~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~  159 (833)
                      +..++++++|++|++++|.+++  +| .++.+++|++|+|++|.+++ +|  ++.+++|++|++++|.+...    .+++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~----~~~~  104 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL----DVTP  104 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC----CCTT
T ss_pred             ccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee----ecCC
Confidence            4467788899999999998885  45 68889999999999999886 44  88889999999999988653    2788


Q ss_pred             CCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCccccccc
Q 048006          160 LSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISS  239 (833)
Q Consensus       160 l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~  239 (833)
                      +++|++|++++|.++++   +  ++.+++|++|++++|.+++. +    +.. +++|++|++++|...+.+  .+..+++
T Consensus       105 l~~L~~L~L~~N~l~~l---~--~~~l~~L~~L~l~~N~l~~l-~----l~~-l~~L~~L~l~~n~~~~~~--~~~~l~~  171 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKL---D--VSQNPLLTYLNCARNTLTEI-D----VSH-NTQLTELDCHLNKKITKL--DVTPQTQ  171 (457)
T ss_dssp             CTTCCEEECCSSCCSCC---C--CTTCTTCCEEECTTSCCSCC-C----CTT-CTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred             CCcCCEEECCCCcCCee---c--CCCCCcCCEEECCCCcccee-c----ccc-CCcCCEEECCCCCccccc--ccccCCc
Confidence            88888999988888774   2  77888888888888888774 2    222 377888888888655544  3556666


Q ss_pred             CCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCc
Q 048006          240 IFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSL  319 (833)
Q Consensus       240 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L  319 (833)
                       |++|++++|++++. |  +..+++|++|++++|++++.   .++.+++|++|++++|++++ +|               
T Consensus       172 -L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---------------  228 (457)
T 3bz5_A          172 -LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---------------  228 (457)
T ss_dssp             -CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---------------
T ss_pred             -CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---------------
Confidence             77777777777763 3  66777777777777777754   36677777777777777665 22               


Q ss_pred             cEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCC
Q 048006          320 KSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNT  399 (833)
Q Consensus       320 ~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n  399 (833)
                                       +..+++|++|++++|++.+..   ...+++|+.|+++++              +|+.|++++|
T Consensus       229 -----------------~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n  274 (457)
T 3bz5_A          229 -----------------VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHN  274 (457)
T ss_dssp             -----------------CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTC
T ss_pred             -----------------ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCC
Confidence                             334455555555555554321   112222333332221              1233334444


Q ss_pred             ccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccccccccc
Q 048006          400 GISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFL  479 (833)
Q Consensus       400 ~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~  479 (833)
                      .+.                         +.+|.   ..+++++.+++++|...+.+|....+++.+++++|         
T Consensus       275 ~~~-------------------------~~~~~---~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~---------  317 (457)
T 3bz5_A          275 TQL-------------------------IYFQA---EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN---------  317 (457)
T ss_dssp             TTC-------------------------CEEEC---TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC---------
T ss_pred             ccC-------------------------Ccccc---cccccCCEEECCCCcccceeccCCCcceEechhhc---------
Confidence            333                         33321   22234444455555444444444455666666554         


Q ss_pred             ccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCC
Q 048006          480 CSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQL  559 (833)
Q Consensus       480 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  559 (833)
                           ++|++|++++|++++. +  +..+++|+.|++++|++++        ++.|..|++++|.+.|.     ..+..|
T Consensus       318 -----~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l  376 (457)
T 3bz5_A          318 -----PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITM  376 (457)
T ss_dssp             -----TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEEC
T ss_pred             -----ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeec
Confidence                 6788888888888874 2  7788888888888888875        24566777888888865     345567


Q ss_pred             cEeccCCCccCCCCCcchhhcCCccceEEec
Q 048006          560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLK  590 (833)
Q Consensus       560 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~  590 (833)
                      +.+++++|+++|.+|..+.....++....-+
T Consensus       377 ~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~  407 (457)
T 3bz5_A          377 PKETLTNNSLTIAVSPDLLDQFGNPMNIEPG  407 (457)
T ss_dssp             CCBCCBTTBEEEECCTTCBCTTSCCCEEEES
T ss_pred             CccccccCcEEEEcChhHhcccCceeeccCC
Confidence            7888888888888887665444444444433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.1e-36  Score=336.58  Aligned_cols=257  Identities=19%  Similarity=0.169  Sum_probs=173.9

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++
T Consensus       104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  183 (477)
T 2id5_A          104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL  183 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence            45566666666666555556666666666666666666666666666666666666666666555555666666666666


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD  644 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  644 (833)
                      ++|.+.+ ++...+..+++|++|++++|.+.+.+|.......+|+.|++++|++++..+..|..+++|            
T Consensus       184 ~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L------------  250 (477)
T 2id5_A          184 RHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL------------  250 (477)
T ss_dssp             ESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC------------
T ss_pred             CCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc------------
Confidence            6666653 333223356666666666666665555555555577777777777764333445544444            


Q ss_pred             ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006          645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  724 (833)
                                          +.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++
T Consensus       251 --------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  310 (477)
T 2id5_A          251 --------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT  310 (477)
T ss_dssp             --------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred             --------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence                                777777777776666677788888888888888888888888888888888888888887


Q ss_pred             cCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCC
Q 048006          725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       725 ~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      ..+..|..+++|++|++++|++.+.++..+.+.......+.++...|..|
T Consensus       311 ~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          311 LEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             eCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            77777888888888888888888877655444444445566777777544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.7e-35  Score=328.14  Aligned_cols=182  Identities=21%  Similarity=0.194  Sum_probs=114.6

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      ++|++|++++|++++ +|  +..+++|+.|++++|++++..   ++.+++|+.|++++|              +|+.|++
T Consensus       212 ~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l  271 (457)
T 3bz5_A          212 IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDL  271 (457)
T ss_dssp             TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCC
T ss_pred             CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEEC
Confidence            455555555555554 23  445555555555555555432   233445555554443              2344555


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD  644 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  644 (833)
                      ++|++.+.+|.   ..+++|+.|++++|...+.+|.   ..++|+.|++++|                            
T Consensus       272 ~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~----------------------------  317 (457)
T 3bz5_A          272 THNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN----------------------------  317 (457)
T ss_dssp             TTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----------------------------
T ss_pred             CCCccCCcccc---cccccCCEEECCCCcccceecc---CCCcceEechhhc----------------------------
Confidence            55555544442   1345555555555554444442   2233444444333                            


Q ss_pred             ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006          645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  724 (833)
                                       ++|+.|++++|++++. +  ++.+++|+.|++++|++++        ++.|+.|++++|.++|
T Consensus       318 -----------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g  369 (457)
T 3bz5_A          318 -----------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEA  369 (457)
T ss_dssp             -----------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEE
T ss_pred             -----------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEe
Confidence                             3459999999999974 3  8999999999999999986        2567888999999997


Q ss_pred             cCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006          725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       725 ~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  753 (833)
                      .     ..+..|..+++++|+++|.||..
T Consensus       370 ~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          370 E-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             E-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             c-----ceeeecCccccccCcEEEEcChh
Confidence            6     24456888999999999999964

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.2e-34  Score=322.24  Aligned_cols=214  Identities=27%  Similarity=0.401  Sum_probs=156.7

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      ++|++|++++|.+++.  ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|++++.  ..+..+++|++|++
T Consensus       177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l  250 (466)
T 1o6v_A          177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL  250 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence            5566666666666543  235666777777777777765544  56677777777777777643  35677778888888


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD  644 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  644 (833)
                      ++|++.+..|  +. .+++|++|++++|.+++..+  +..+++|+.|++++|++.+..|  +..+++             
T Consensus       251 ~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~-------------  310 (466)
T 1o6v_A          251 ANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN-------------  310 (466)
T ss_dssp             CSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT-------------
T ss_pred             CCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC-------------
Confidence            8887774333  33 57788888888888875443  7778888888888888875433  444443             


Q ss_pred             ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006          645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  724 (833)
                                         |+.|++++|++++..|  +..+++|++|++++|++++.  ..+..+++|+.|++++|++++
T Consensus       311 -------------------L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          311 -------------------LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             -------------------CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             -------------------CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence                               4888888888886655  77888899999999988865  578888999999999999988


Q ss_pred             cCCccccCCCCCCEEECcCCcCccC
Q 048006          725 GIPSSLSQLSGLSVMDLSYNNLSGK  749 (833)
Q Consensus       725 ~~p~~l~~l~~L~~L~ls~N~l~g~  749 (833)
                      ..|  +..+++|+.|++++|++++.
T Consensus       368 ~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          368 LTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CGG--GTTCTTCCEEECCCEEEECC
T ss_pred             cch--hhcCCCCCEEeccCCcccCC
Confidence            776  78888999999999998874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=9.6e-36  Score=314.06  Aligned_cols=259  Identities=31%  Similarity=0.522  Sum_probs=244.3

Q ss_pred             CcccEEEcCCCcCcC--CCCCcccCCCCCcEEEccC-CcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcE
Q 048006          485 SKLTYVDLSSNLLSG--KLPDCWWTFDSLVILNLEN-NSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRL  561 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  561 (833)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|++++.+|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999998  8999999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             eccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCC-CCCEEeccCCcCcccCCccccccccccccCCCCc
Q 048006          562 LDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLA-FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDP  640 (833)
Q Consensus       562 L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  640 (833)
                      |++++|.+.+.+|..+. .+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..++ |        
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence            99999999989998887 699999999999999999999999998 999999999999999998887765 5        


Q ss_pred             ccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCC
Q 048006          641 TIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRN  720 (833)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  720 (833)
                                              +.|++++|++++.+|..+..+++|++|+|++|++++.+|. +..+++|++|+|++|
T Consensus       200 ------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N  254 (313)
T 1ogq_A          200 ------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN  254 (313)
T ss_dssp             ------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS
T ss_pred             ------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC
Confidence                                    9999999999999999999999999999999999977766 888999999999999


Q ss_pred             cCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCCCCC
Q 048006          721 QLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKC  779 (833)
Q Consensus       721 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c  779 (833)
                      ++++.+|..+..+++|++|++++|+++|.+|....+..+..+.+.|||++||.|++ .|
T Consensus       255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            99999999999999999999999999999999988999999999999999998765 56

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.9e-34  Score=319.35  Aligned_cols=119  Identities=24%  Similarity=0.365  Sum_probs=60.3

Q ss_pred             CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEE
Q 048006          214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN  293 (833)
Q Consensus       214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  293 (833)
                      ++++.|+++++.+.. +| .+..+++ |++|++++|.+++..+  +.++++|++|++++|.+++..+  +.++++|++|+
T Consensus        46 ~~l~~L~l~~~~i~~-l~-~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID-GVEYLNN-LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT-TGGGCTT-CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             ccccEEecCCCCCcc-Cc-chhhhcC-CCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            445555555554443 22 2444444 5555555555554332  5555666666666665554333  55556666666


Q ss_pred             ccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECc
Q 048006          294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLA  349 (833)
Q Consensus       294 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~  349 (833)
                      +++|.+++..+  +..++      +|++|++++|.+..++.  +..+++|++|+++
T Consensus       119 L~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  164 (466)
T 1o6v_A          119 LFNNQITDIDP--LKNLT------NLNRLELSSNTISDISA--LSGLTSLQQLSFG  164 (466)
T ss_dssp             CCSSCCCCCGG--GTTCT------TCSEEEEEEEEECCCGG--GTTCTTCSEEEEE
T ss_pred             CCCCCCCCChH--HcCCC------CCCEEECCCCccCCChh--hccCCcccEeecC
Confidence            66665554432  44444      45555554444444432  4555555555553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8e-34  Score=319.33  Aligned_cols=258  Identities=24%  Similarity=0.211  Sum_probs=230.8

Q ss_pred             CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006          484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD  563 (833)
Q Consensus       484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  563 (833)
                      +++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus        79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence            37788888888888877777789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006          564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK  643 (833)
Q Consensus       564 L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  643 (833)
                      +++|+++ .+|...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.+|.......             
T Consensus       159 l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-------------  224 (477)
T 2id5_A          159 LEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-------------  224 (477)
T ss_dssp             EESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC-------------
T ss_pred             CCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc-------------
Confidence            9999998 66665555799999999999999988888999999999999999998877766544333             


Q ss_pred             cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006          644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV  723 (833)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  723 (833)
                                         +|+.|++++|++++..+..+..+++|++|+|++|.+++..+..|..+++|+.|+|++|+++
T Consensus       225 -------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (477)
T 2id5_A          225 -------------------NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA  285 (477)
T ss_dssp             -------------------CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred             -------------------cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence                               3499999999999666678999999999999999999988889999999999999999999


Q ss_pred             ccCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCC
Q 048006          724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       724 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      +..|..|..+++|++|++++|++++..+.. ..+..+..+.+.+||+.|+|+
T Consensus       286 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            999999999999999999999999866543 456677888899999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.5e-33  Score=308.08  Aligned_cols=333  Identities=20%  Similarity=0.196  Sum_probs=211.3

Q ss_pred             CccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeec
Q 048006          318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDIS  397 (833)
Q Consensus       318 ~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls  397 (833)
                      +++.|++.++.++.+|...|..+++|++|++++|.+....+..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            34444444444444555455566666666666666665555555555555555555555555556666666666666666


Q ss_pred             CCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccccccc
Q 048006          398 NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSIS  477 (833)
Q Consensus       398 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~  477 (833)
                      +|+++...+..|..                                                                  
T Consensus       126 ~n~l~~l~~~~~~~------------------------------------------------------------------  139 (390)
T 3o6n_A          126 RNDLSSLPRGIFHN------------------------------------------------------------------  139 (390)
T ss_dssp             SSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred             CCccCcCCHHHhcC------------------------------------------------------------------
Confidence            66655322221111                                                                  


Q ss_pred             ccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCC
Q 048006          478 FLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCS  557 (833)
Q Consensus       478 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  557 (833)
                            +++|++|++++|.+++..+..|..+++|++|++++|.+++.   .+..+++|++|++++|.+++.     ...+
T Consensus       140 ------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~  205 (390)
T 3o6n_A          140 ------TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPI  205 (390)
T ss_dssp             ------CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCS
T ss_pred             ------CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCC
Confidence                  24555555555555555555566666666666666666543   244556666666666666532     2334


Q ss_pred             CCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCC
Q 048006          558 QLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS  637 (833)
Q Consensus       558 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  637 (833)
                      +|++|++++|.+. .+|..   ..++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..|..|..+++|     
T Consensus       206 ~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----  274 (390)
T 3o6n_A          206 AVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-----  274 (390)
T ss_dssp             SCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----
T ss_pred             cceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC-----
Confidence            6677777777765 44443   245677777777777643  456677777777777777776666666665555     


Q ss_pred             CCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeC
Q 048006          638 SDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDL  717 (833)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  717 (833)
                                                 +.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++
T Consensus       275 ---------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          275 ---------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  325 (390)
T ss_dssp             ---------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             ---------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence                                       777777777773 5556667788888888888887 56667778888888888


Q ss_pred             CCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCC
Q 048006          718 SRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       718 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      ++|+++.. |  +..+++|+.|++++|++.+.... ..+..+....+.+++..|.++
T Consensus       326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred             CCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence            88888754 3  66778899999999999875432 334455556677787777643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.8e-33  Score=320.90  Aligned_cols=333  Identities=20%  Similarity=0.198  Sum_probs=227.0

Q ss_pred             CccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeec
Q 048006          318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDIS  397 (833)
Q Consensus       318 ~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls  397 (833)
                      +++.+++.++.++.+|+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|+|+
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            34444444444455555556666667777777766666555556566666666666666665666666666666666666


Q ss_pred             CCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccccccc
Q 048006          398 NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSIS  477 (833)
Q Consensus       398 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~  477 (833)
                      +|.+++..+..|..                                                                  
T Consensus       132 ~n~l~~l~~~~~~~------------------------------------------------------------------  145 (597)
T 3oja_B          132 RNDLSSLPRGIFHN------------------------------------------------------------------  145 (597)
T ss_dssp             SSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred             CCCCCCCCHHHhcc------------------------------------------------------------------
Confidence            66665332222211                                                                  


Q ss_pred             ccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCC
Q 048006          478 FLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCS  557 (833)
Q Consensus       478 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  557 (833)
                            +++|++|++++|.+++..|..|..+++|++|++++|.+++.   .+..+++|+.|++++|.+++.     ...+
T Consensus       146 ------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~  211 (597)
T 3oja_B          146 ------TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPI  211 (597)
T ss_dssp             ------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCT
T ss_pred             ------CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCc
Confidence                  25566666666666666666666677777777777776643   245566777777777766642     3345


Q ss_pred             CCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCC
Q 048006          558 QLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS  637 (833)
Q Consensus       558 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  637 (833)
                      +|+.|++++|.+. .+|...   .++|+.|++++|.+++  +..+..+++|+.|+|++|.+.+..|..|..+++|     
T Consensus       212 ~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----  280 (597)
T 3oja_B          212 AVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-----  280 (597)
T ss_dssp             TCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----
T ss_pred             hhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-----
Confidence            6777777777776 444432   3577888888887775  3567778888888888888887777777766665     


Q ss_pred             CCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeC
Q 048006          638 SDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDL  717 (833)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  717 (833)
                                                 +.|+|++|.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|
T Consensus       281 ---------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L  331 (597)
T 3oja_B          281 ---------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  331 (597)
T ss_dssp             ---------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             ---------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence                                       788888888874 5666777888999999999888 67777888899999999


Q ss_pred             CCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCC
Q 048006          718 SRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       718 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      ++|++++. |  +..+++|+.|++++|+++|..+. ..+..+....+.+++..|+.+
T Consensus       332 ~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          332 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            99998855 2  66778999999999999987543 345566666788899999764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=2.3e-33  Score=297.51  Aligned_cols=275  Identities=16%  Similarity=0.209  Sum_probs=194.1

Q ss_pred             CCCCCCHHHHHHHHHhhhcCc-CCCCCCCCCCC-CCCCCCCCcccceEecC--------CCCcEEEEECCCCCCCCCCcc
Q 048006            7 NIIRCIDEEREALLTFKASLV-DESGVLSSWGP-EDEKRDCCKWTGLRCSN--------KTNHVILLDLQPIDFDSFPLR   76 (833)
Q Consensus         7 ~~~~~~~~~~~~ll~~k~~~~-~~~~~~~~w~~-~~~~~~~c~w~gv~c~~--------~~~~v~~l~L~~~~~~~~~l~   76 (833)
                      ....+..+|+.||++||+++. |+.+.+.+|.. .....++|.|.|+.|..        ..++|+.|+|++     +.++
T Consensus        20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~-----n~l~   94 (328)
T 4fcg_A           20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS-----VPLP   94 (328)
T ss_dssp             C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES-----SCCS
T ss_pred             eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC-----CCch
Confidence            344567789999999999984 77677788931 01467899999999952        347899999998     5665


Q ss_pred             eecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCccc
Q 048006           77 GTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDW  156 (833)
Q Consensus        77 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~  156 (833)
                       .+|+.++++++|++|+|++|.++  .+|..++.+++|++|+|++|.+. .+|..++++++|++|++++|.+.. ..+..
T Consensus        95 -~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~-~~p~~  169 (328)
T 4fcg_A           95 -QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT-ELPEP  169 (328)
T ss_dssp             -SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC-CCCSC
T ss_pred             -hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc-ccChh
Confidence             77888899999999999999998  48888999999999999999998 789899999999999999987654 23333


Q ss_pred             c---------cCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCC
Q 048006          157 L---------SHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLT  227 (833)
Q Consensus       157 l---------~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  227 (833)
                      +         .++++|++|++++|.++.   +|..++++++|++|++++|.+.+. |.  .+.. +++|++|++++|.+.
T Consensus       170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~N~l~~l-~~--~l~~-l~~L~~L~Ls~n~~~  242 (328)
T 4fcg_A          170 LASTDASGEHQGLVNLQSLRLEWTGIRS---LPASIANLQNLKSLKIRNSPLSAL-GP--AIHH-LPKLEELDLRGCTAL  242 (328)
T ss_dssp             SEEEC-CCCEEESTTCCEEEEEEECCCC---CCGGGGGCTTCCEEEEESSCCCCC-CG--GGGG-CTTCCEEECTTCTTC
T ss_pred             HhhccchhhhccCCCCCEEECcCCCcCc---chHhhcCCCCCCEEEccCCCCCcC-ch--hhcc-CCCCCEEECcCCcch
Confidence            3         346777777777776664   345566666677777766666643 32  2222 266666666666666


Q ss_pred             CCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCC
Q 048006          228 SSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKL  299 (833)
Q Consensus       228 ~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  299 (833)
                      +.+|..+..+++ |++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|+.+++..+.+
T Consensus       243 ~~~p~~~~~l~~-L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          243 RNYPPIFGGRAP-LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CBCCCCTTCCCC-CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             hhhHHHhcCCCC-CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            666666666665 66666666666666666666666666666666666666666666666666666655543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.3e-32  Score=294.76  Aligned_cols=307  Identities=21%  Similarity=0.176  Sum_probs=188.0

Q ss_pred             CcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCcc
Q 048006          241 FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK  320 (833)
Q Consensus       241 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~  320 (833)
                      ++.|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++.++      +|+
T Consensus        47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~  120 (390)
T 3o6n_A           47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP------LLT  120 (390)
T ss_dssp             CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCC
T ss_pred             ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC------CCC
Confidence            34444444444433333344444555555555554444444444455555555555554444444444444      444


Q ss_pred             EEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCc
Q 048006          321 SLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTG  400 (833)
Q Consensus       321 ~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~  400 (833)
                      +|++++|.+..+|...|.++++|++|++++|.+....+..+..+++|++|++++|.+++.   .+..+++|+.|++++|.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            444444444444444455666666666666666554444455555555555555554432   13344555555555555


Q ss_pred             cccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccc
Q 048006          401 ISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLC  480 (833)
Q Consensus       401 i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  480 (833)
                      +++...      ..+|++|++++|.+.                                              .....  
T Consensus       198 l~~~~~------~~~L~~L~l~~n~l~----------------------------------------------~~~~~--  223 (390)
T 3o6n_A          198 LSTLAI------PIAVEELDASHNSIN----------------------------------------------VVRGP--  223 (390)
T ss_dssp             CSEEEC------CSSCSEEECCSSCCC----------------------------------------------EEECC--
T ss_pred             ccccCC------CCcceEEECCCCeee----------------------------------------------ecccc--
Confidence            443211      113444444444333                                              11100  


Q ss_pred             cccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCc
Q 048006          481 SISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLR  560 (833)
Q Consensus       481 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  560 (833)
                        ..++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++..+..+++|+
T Consensus       224 --~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~  298 (390)
T 3o6n_A          224 --VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLK  298 (390)
T ss_dssp             --CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCC
T ss_pred             --ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCC
Confidence              026788888888888754  467888899999999999988888888889999999999999885 455667888999


Q ss_pred             EeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcc
Q 048006          561 LLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG  620 (833)
Q Consensus       561 ~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  620 (833)
                      +|++++|++. .+|..+. .+++|++|++++|+++.. +  +..+++|+.|++++|++..
T Consensus       299 ~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          299 VLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             EEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             EEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            9999999987 7777766 588999999999998754 3  6778899999999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.1e-31  Score=284.20  Aligned_cols=307  Identities=24%  Similarity=0.335  Sum_probs=195.5

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCC
Q 048006           83 LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY  162 (833)
Q Consensus        83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  162 (833)
                      +..+++|++|+++++.+..  +| .+..+++|++|++++|.+.+ +|. +.++++|++|++++|.+..   ++.+.++++
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~---~~~~~~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD---ISALQNLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC---CGGGTTCTT
T ss_pred             chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC---chHHcCCCc
Confidence            4456677777777777763  33 36667777777777777764 333 7777777777777776643   345777777


Q ss_pred             CcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCc
Q 048006          163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI  242 (833)
Q Consensus       163 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~  242 (833)
                      |++|++++|.+++.+    .+..+++|++|++++|.....++.    ...+++|++|++++|.+.+..+  +..+++ |+
T Consensus       112 L~~L~l~~n~i~~~~----~~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~--~~~l~~-L~  180 (347)
T 4fmz_A          112 LRELYLNEDNISDIS----PLANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESKVKDVTP--IANLTD-LY  180 (347)
T ss_dssp             CSEEECTTSCCCCCG----GGTTCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCSSCCCCCGG--GGGCTT-CS
T ss_pred             CCEEECcCCcccCch----hhccCCceeEEECCCCCCcccccc----hhhCCCCcEEEecCCCcCCchh--hccCCC-CC
Confidence            777777777776642    266777777777777754444332    2233677777777777665433  556666 77


Q ss_pred             EEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEE
Q 048006          243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSL  322 (833)
Q Consensus       243 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L  322 (833)
                      +|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++++..+  +..++      +|++|
T Consensus       181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L  248 (347)
T 4fmz_A          181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLS------QLTWL  248 (347)
T ss_dssp             EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT------TCCEE
T ss_pred             EEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCC------CCCEE
Confidence            77777777765432  6677777777777777765433  6677777777777777766544  55555      66666


Q ss_pred             EcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccc
Q 048006          323 YLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGIS  402 (833)
Q Consensus       323 ~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~  402 (833)
                      ++++|.+..++  .+..+++|++|++++|.+...  ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus       249 ~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          249 EIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             ECCCCccCCCh--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            66655655553  366777777777777766653  23555666666666666666666666666666666666666666


Q ss_pred             cccchhHHhhcccccEEEccccccc
Q 048006          403 DTIPDWFWNLSNKFSFLDLASNQIK  427 (833)
Q Consensus       403 ~~~~~~~~~~~~~L~~L~L~~n~l~  427 (833)
                      +..|  +.. .++|++|++++|.++
T Consensus       325 ~~~~--~~~-l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          325 DIRP--LAS-LSKMDSADFANQVIK  346 (347)
T ss_dssp             CCGG--GGG-CTTCSEESSSCC---
T ss_pred             cccC--hhh-hhccceeehhhhccc
Confidence            5554  222 235666666666553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=5.7e-31  Score=283.04  Aligned_cols=215  Identities=23%  Similarity=0.318  Sum_probs=136.4

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      ++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++
T Consensus       132 ~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  206 (347)
T 4fmz_A          132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA  206 (347)
T ss_dssp             TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeec
Confidence            445555555554332222 25556666666666666654332  5566666666666666664332  566667777777


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD  644 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  644 (833)
                      ++|.+.+ ++. +. .+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..++              
T Consensus       207 ~~n~l~~-~~~-~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~--------------  265 (347)
T 4fmz_A          207 YVNQITD-ITP-VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT--------------  265 (347)
T ss_dssp             CSSCCCC-CGG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT--------------
T ss_pred             ccCCCCC-Cch-hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC--------------
Confidence            7776663 332 22 46677777777777764333  66777777777777777642  2333333              


Q ss_pred             ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006          645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  724 (833)
                                        +|+.|++++|++++.  +.+..+++|++|++++|.+++..|..++.+++|+.|++++|++++
T Consensus       266 ------------------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          266 ------------------KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             ------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             ------------------CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence                              347777777777743  347777888888888888877777777888888888888888876


Q ss_pred             cCCccccCCCCCCEEECcCCcCc
Q 048006          725 GIPSSLSQLSGLSVMDLSYNNLS  747 (833)
Q Consensus       725 ~~p~~l~~l~~L~~L~ls~N~l~  747 (833)
                      ..|  +..+++|++|++++|+++
T Consensus       326 ~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          326 IRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CGG--GGGCTTCSEESSSCC---
T ss_pred             ccC--hhhhhccceeehhhhccc
Confidence            655  777788888888888764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=3.6e-31  Score=305.21  Aligned_cols=310  Identities=22%  Similarity=0.228  Sum_probs=190.6

Q ss_pred             CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEE
Q 048006          214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN  293 (833)
Q Consensus       214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  293 (833)
                      .+++.+++++|.+....+..+..+++ |++|++++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQ-VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCC-CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCC-CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            55566666655555433333444444 55555555555544444555555555555555555554444455555555555


Q ss_pred             ccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEcc
Q 048006          294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS  373 (833)
Q Consensus       294 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  373 (833)
                      |++|.++                              .+|+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus       130 L~~n~l~------------------------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          130 LERNDLS------------------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             CCSSCCC------------------------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             eeCCCCC------------------------------CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence            5555444                              3343345555566666666665555444444444444444444


Q ss_pred             CccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccc
Q 048006          374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEG  453 (833)
Q Consensus       374 ~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~  453 (833)
                      +|.+++..   +..+++|+.|++++|.+++...      ...|+.|++++|.+.                         .
T Consensus       180 ~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~------~~~L~~L~ls~n~l~-------------------------~  225 (597)
T 3oja_B          180 SNRLTHVD---LSLIPSLFHANVSYNLLSTLAI------PIAVEELDASHNSIN-------------------------V  225 (597)
T ss_dssp             TSCCSBCC---GGGCTTCSEEECCSSCCSEEEC------CTTCSEEECCSSCCC-------------------------E
T ss_pred             CCCCCCcC---hhhhhhhhhhhcccCccccccC------CchhheeeccCCccc-------------------------c
Confidence            44444321   3334455555555554443211      113444444444332                         1


Q ss_pred             cCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcC
Q 048006          454 LIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQ  533 (833)
Q Consensus       454 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  533 (833)
                      ..+..                         .++|+.|++++|.+++  +..+..+++|+.|++++|.+++..|..|..++
T Consensus       226 ~~~~~-------------------------~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  278 (597)
T 3oja_B          226 VRGPV-------------------------NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  278 (597)
T ss_dssp             EECSC-------------------------CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             ccccc-------------------------CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence            11111                         2567788888888775  35678888888888888888888888888888


Q ss_pred             CccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEec
Q 048006          534 NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDL  613 (833)
Q Consensus       534 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L  613 (833)
                      +|++|+|++|.+++ +|..+..+++|++|++++|.+. .+|..+. .+++|++|+|++|.+++.   .+..+++|+.|++
T Consensus       279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l  352 (597)
T 3oja_B          279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL---KLSTHHTLKNLTL  352 (597)
T ss_dssp             SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC---CCCTTCCCSEEEC
T ss_pred             CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc---ChhhcCCCCEEEe
Confidence            89999999998886 4566677889999999999988 7887776 588999999999988754   2667788999999


Q ss_pred             cCCcCccc
Q 048006          614 SLNNISGK  621 (833)
Q Consensus       614 s~N~l~~~  621 (833)
                      ++|++.+.
T Consensus       353 ~~N~~~~~  360 (597)
T 3oja_B          353 SHNDWDCN  360 (597)
T ss_dssp             CSSCEEHH
T ss_pred             eCCCCCCh
Confidence            99988754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.9e-30  Score=274.29  Aligned_cols=220  Identities=22%  Similarity=0.241  Sum_probs=170.7

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCc--cccCccccCCCCCcEe
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT--GELSSSFRNCSQLRLL  562 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L  562 (833)
                      ++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.++  +..+..+..+ +|++|
T Consensus       102 ~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L  177 (332)
T 2ft3_A          102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL  177 (332)
T ss_dssp             TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred             CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence            55666666666665 3333332  56777777777777655556777777777777777775  3566777777 88888


Q ss_pred             ccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccc
Q 048006          563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI  642 (833)
Q Consensus       563 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  642 (833)
                      ++++|+++ .+|..+.   ++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|          
T Consensus       178 ~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------  243 (332)
T 2ft3_A          178 RISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL----------  243 (332)
T ss_dssp             BCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC----------
T ss_pred             ECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC----------
Confidence            88888887 5776543   688899999999988777888999999999999999988777777766665          


Q ss_pred             ccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCC------CCCCEEe
Q 048006          643 KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQL------KSLDFLD  716 (833)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~  716 (833)
                                            +.|++++|+++ .+|..+..+++|++|++++|++++..+..|...      ..|+.|+
T Consensus       244 ----------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~  300 (332)
T 2ft3_A          244 ----------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS  300 (332)
T ss_dssp             ----------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred             ----------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence                                  89999999998 788889999999999999999997777777653      6789999


Q ss_pred             CCCCcCc--ccCCccccCCCCCCEEECcCCc
Q 048006          717 LSRNQLV--GGIPSSLSQLSGLSVMDLSYNN  745 (833)
Q Consensus       717 Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~  745 (833)
                      +++|++.  +..|..|..+++|+.+++++|+
T Consensus       301 l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             eecCcccccccCcccccccchhhhhhccccc
Confidence            9999987  6778889999999999999885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4.6e-33  Score=312.07  Aligned_cols=125  Identities=18%  Similarity=0.153  Sum_probs=66.7

Q ss_pred             CcEEEccCcccccccccc-ccCCCCCcEEECcCCcccc----cccccccCCCCCcEEEccCCCCCchhhHHHhh-cCCcc
Q 048006          241 FISIDLGFNQLQGSIPES-FQHMVYLEHLRLSFNELEG----GIPKFFGNMCSLITLNLSNNKLSGQLSEIIQN-LSSGC  314 (833)
Q Consensus       241 L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~~~  314 (833)
                      +++|++++|+++...... +..+++|++|++++|++++    .++..+..+++|++|++++|.+++..+..+.. ++   
T Consensus         5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~---   81 (461)
T 1z7x_W            5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ---   81 (461)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC---
T ss_pred             ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh---
Confidence            566666666665433222 4555666666666666553    23444555566666666666555433322221 11   


Q ss_pred             ccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEE
Q 048006          315 LENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELL  394 (833)
Q Consensus       315 ~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L  394 (833)
                                             ...++|++|++++|.+.....                    ..++..+..+++|++|
T Consensus        82 -----------------------~~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L  118 (461)
T 1z7x_W           82 -----------------------TPSCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQEL  118 (461)
T ss_dssp             -----------------------STTCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEE
T ss_pred             -----------------------hCCCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEE
Confidence                                   011146666666665542110                    1345667777888888


Q ss_pred             eecCCccccccchhHHh
Q 048006          395 DISNTGISDTIPDWFWN  411 (833)
Q Consensus       395 ~Ls~n~i~~~~~~~~~~  411 (833)
                      ++++|.+++..+..+..
T Consensus       119 ~Ls~n~i~~~~~~~l~~  135 (461)
T 1z7x_W          119 HLSDNLLGDAGLQLLCE  135 (461)
T ss_dssp             ECCSSBCHHHHHHHHHH
T ss_pred             ECCCCcCchHHHHHHHH
Confidence            88888877655555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.5e-29  Score=269.67  Aligned_cols=221  Identities=24%  Similarity=0.242  Sum_probs=157.2

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCc--cccCccccCCCCCcEe
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT--GELSSSFRNCSQLRLL  562 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L  562 (833)
                      ++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+.  +..+..+..+++|++|
T Consensus       100 ~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  176 (330)
T 1xku_A          100 VKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  176 (330)
T ss_dssp             TTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             CCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence            44555555555554 2333222  46666666666666555555666667777777777664  3556677777788888


Q ss_pred             ccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccc
Q 048006          563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI  642 (833)
Q Consensus       563 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  642 (833)
                      ++++|.+. .+|..+.   ++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|          
T Consensus       177 ~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------  242 (330)
T 1xku_A          177 RIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL----------  242 (330)
T ss_dssp             ECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC----------
T ss_pred             ECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC----------
Confidence            88888776 5666543   678888888888887777888888888888888888887666666665555          


Q ss_pred             ccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCC------CCCCCEEe
Q 048006          643 KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQ------LKSLDFLD  716 (833)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~  716 (833)
                                            +.|++++|+++ .+|..+..+++|++|++++|++++..+..|..      .+.|+.|+
T Consensus       243 ----------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~  299 (330)
T 1xku_A          243 ----------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  299 (330)
T ss_dssp             ----------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             ----------------------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence                                  88888888888 77878888888888888888888776666643      36788888


Q ss_pred             CCCCcCcc--cCCccccCCCCCCEEECcCCc
Q 048006          717 LSRNQLVG--GIPSSLSQLSGLSVMDLSYNN  745 (833)
Q Consensus       717 Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~  745 (833)
                      +++|++..  ..|..|..+..++.+++++|+
T Consensus       300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             eecCcccccccCccccccccceeEEEecccC
Confidence            88888763  566778888888888888874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4.2e-33  Score=312.38  Aligned_cols=86  Identities=19%  Similarity=0.169  Sum_probs=46.2

Q ss_pred             CcccEEEcCCCcCcCC----CCCcccCCCCCcEEEccCCcccccCCCCccC-----cCCccEEEcccCcCcc----ccCc
Q 048006          485 SKLTYVDLSSNLLSGK----LPDCWWTFDSLVILNLENNSFSGRIPDSMGF-----LQNIQTLSLHNNRLTG----ELSS  551 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~  551 (833)
                      ++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|++++    .++.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            3555555555555543    2334445566666666666665443322221     3456666666666654    4455


Q ss_pred             cccCCCCCcEeccCCCccC
Q 048006          552 SFRNCSQLRLLDLGKNALY  570 (833)
Q Consensus       552 ~~~~l~~L~~L~L~~n~l~  570 (833)
                      .+..+++|++|++++|+++
T Consensus       393 ~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHCCCCCEEECCSSSCC
T ss_pred             HHHhCCCccEEECCCCCCC
Confidence            5555566666666666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.2e-29  Score=268.46  Aligned_cols=270  Identities=19%  Similarity=0.170  Sum_probs=136.1

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEE
Q 048006           87 HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYL  166 (833)
Q Consensus        87 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  166 (833)
                      ++|++|++++|.+++. .|..|..+++|++|+|++|.+.+..|..|+++++|++|++++|.+..  .+..+.  ++|++|
T Consensus        54 ~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~--~~L~~L  128 (332)
T 2ft3_A           54 PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPPNLP--SSLVEL  128 (332)
T ss_dssp             TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCSSCC--TTCCEE
T ss_pred             CCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCcccc--ccCCEE
Confidence            4555566666655542 34455555666666666665555555555555666666665555542  111111  455555


Q ss_pred             ecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEc
Q 048006          167 NLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDL  246 (833)
Q Consensus       167 ~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~L  246 (833)
                      ++++|.++.++  +..++.+++|++|++++|.+..                         .+..+..+..+ + |++|++
T Consensus       129 ~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~-------------------------~~~~~~~~~~l-~-L~~L~l  179 (332)
T 2ft3_A          129 RIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLEN-------------------------SGFEPGAFDGL-K-LNYLRI  179 (332)
T ss_dssp             ECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBG-------------------------GGSCTTSSCSC-C-CSCCBC
T ss_pred             ECCCCccCccC--HhHhCCCccCCEEECCCCcccc-------------------------CCCCcccccCC-c-cCEEEC
Confidence            55555555431  1234555555555555555432                         01233333333 2 444444


Q ss_pred             cCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEccc
Q 048006          247 GFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLEN  326 (833)
Q Consensus       247 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~  326 (833)
                      ++|.+++ +|..+.  ++|++|++++|++++..+..|..+++|++|++++|++++..+..+..++      +|+.|++++
T Consensus       180 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~L~~  250 (332)
T 2ft3_A          180 SEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP------TLRELHLDN  250 (332)
T ss_dssp             CSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT------TCCEEECCS
T ss_pred             cCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC------CCCEEECCC
Confidence            4444443 222222  3455555555555544444455555555555555555544444444444      455555544


Q ss_pred             ccccccChhhhcCCCCCCEEECcCCccccccCCCccC------CccccEEEccCccCC--CCCChhhcccccccEEeecC
Q 048006          327 SLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVP------PFQLIIISLSSCKIG--PHFPKWLQTQNQIELLDISN  398 (833)
Q Consensus       327 ~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~~~l~--~~~~~~l~~l~~L~~L~Ls~  398 (833)
                      |.+..+|. .+..+++|++|++++|+++...+..|.+      ...|+.|++++|.+.  ...|.++..+++|+.+++++
T Consensus       251 N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~  329 (332)
T 2ft3_A          251 NKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN  329 (332)
T ss_dssp             SCCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred             CcCeecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence            44445554 3566667777777777666655554433      234566666666554  45556666666666666666


Q ss_pred             Cc
Q 048006          399 TG  400 (833)
Q Consensus       399 n~  400 (833)
                      |+
T Consensus       330 n~  331 (332)
T 2ft3_A          330 YK  331 (332)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=8e-29  Score=264.00  Aligned_cols=287  Identities=21%  Similarity=0.221  Sum_probs=196.8

Q ss_pred             EEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccc
Q 048006           60 VILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQ  139 (833)
Q Consensus        60 v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  139 (833)
                      ++.+++++     ..++ .+|..+.  +++++|++++|.+++. .+..|+.+++|++|+|++|.+.+..|..|.++++|+
T Consensus        33 l~~l~~~~-----~~l~-~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (330)
T 1xku_A           33 LRVVQCSD-----LGLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE  103 (330)
T ss_dssp             TTEEECTT-----SCCC-SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CeEEEecC-----CCcc-ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence            34677777     3443 3454443  6899999999999974 556899999999999999999988899999999999


Q ss_pred             eecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCC--CCCccccccccCCCCC
Q 048006          140 HLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPP--VIPLSLNHLNSSTSLE  217 (833)
Q Consensus       140 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~~~~L~  217 (833)
                      +|++++|.+..  .+..+.  ++|++|++++|.+++.  .+..+.++++|++|++++|.+..  ..+.  .+ ..+++|+
T Consensus       104 ~L~Ls~n~l~~--l~~~~~--~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~-~~l~~L~  174 (330)
T 1xku_A          104 RLYLSKNQLKE--LPEKMP--KTLQELRVHENEITKV--RKSVFNGLNQMIVVELGTNPLKSSGIENG--AF-QGMKKLS  174 (330)
T ss_dssp             EEECCSSCCSB--CCSSCC--TTCCEEECCSSCCCBB--CHHHHTTCTTCCEEECCSSCCCGGGBCTT--GG-GGCTTCC
T ss_pred             EEECCCCcCCc--cChhhc--ccccEEECCCCccccc--CHhHhcCCccccEEECCCCcCCccCcChh--hc-cCCCCcC
Confidence            99999999864  222222  7899999999999875  34668899999999999998854  3333  22 3348888


Q ss_pred             EEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCC
Q 048006          218 TLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNN  297 (833)
Q Consensus       218 ~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  297 (833)
                      +|++++|.++. +|..+.  ++ |++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus       175 ~L~l~~n~l~~-l~~~~~--~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          175 YIRIADTNITT-IPQGLP--PS-LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             EEECCSSCCCS-CCSSCC--TT-CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred             EEECCCCcccc-CCcccc--cc-CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence            88888888874 444443  34 778888888887777777778888888888888877766667777777777777777


Q ss_pred             CCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCC------ccccEEE
Q 048006          298 KLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPP------FQLIIIS  371 (833)
Q Consensus       298 ~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------~~L~~L~  371 (833)
                      +++ .+|..+.                              .+++|++|++++|+++...+..|...      ..++.++
T Consensus       251 ~l~-~lp~~l~------------------------------~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~  299 (330)
T 1xku_A          251 KLV-KVPGGLA------------------------------DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  299 (330)
T ss_dssp             CCS-SCCTTTT------------------------------TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             cCc-cCChhhc------------------------------cCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence            776 3343344                              44455555555555544433333221      3344444


Q ss_pred             ccCccCCC--CCChhhcccccccEEeecCC
Q 048006          372 LSSCKIGP--HFPKWLQTQNQIELLDISNT  399 (833)
Q Consensus       372 L~~~~l~~--~~~~~l~~l~~L~~L~Ls~n  399 (833)
                      +++|.+..  ..|..+..+..++.+++++|
T Consensus       300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             eecCcccccccCccccccccceeEEEeccc
Confidence            44444331  34455555666666666555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=5.2e-28  Score=268.37  Aligned_cols=253  Identities=22%  Similarity=0.217  Sum_probs=191.1

Q ss_pred             CceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcc
Q 048006          462 SSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLH  541 (833)
Q Consensus       462 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  541 (833)
                      ...++.++..++......    .+.++.|++++|++++..+..|..+++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSSCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            445666666665433222    2567888888888887777778888888888888888887777777888888888888


Q ss_pred             cCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCc-ccccccccccCCCCCCEEeccCCcCcc
Q 048006          542 NNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNK-FHGKIPFQLCQLAFLQVLDLSLNNISG  620 (833)
Q Consensus       542 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~  620 (833)
                      +|++++..+..|..+++|++|++++|++. .+|...+..+++|++|++++|. +....+..+.++++|++|++++|+++ 
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence            88888766667788888888888888877 5555444467888888888743 44333446777888888888888776 


Q ss_pred             cCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccc
Q 048006          621 KIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTG  700 (833)
Q Consensus       621 ~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  700 (833)
                      .+| .+..+                                ++|+.|+|++|++++..|..|.++++|++|+|++|++++
T Consensus       199 ~~~-~~~~l--------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  245 (440)
T 3zyj_A          199 EIP-NLTPL--------------------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV  245 (440)
T ss_dssp             SCC-CCTTC--------------------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             ccc-ccCCC--------------------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence            333 23333                                345888888888888888888888889999999998888


Q ss_pred             cCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006          701 QISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       701 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  753 (833)
                      ..+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+...
T Consensus       246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~  298 (440)
T 3zyj_A          246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL  298 (440)
T ss_dssp             ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred             EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence            88888888888999999999888877778888888889999888888876543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.5e-28  Score=259.00  Aligned_cols=236  Identities=25%  Similarity=0.255  Sum_probs=202.5

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCccccc--CCCCccCcCCccEEEcccCcCccccCccccCCCCCcEe
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR--IPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL  562 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  562 (833)
                      +++++|++++|.++...+..|..+++|++|++++|.++..  .+..+..+++|++|++++|.++. +|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence            5788889999988866666688999999999999988733  35566778999999999999984 56678899999999


Q ss_pred             ccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcc-cCCccccccccccccCCCCcc
Q 048006          563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG-KIPKCFNNFTAMTQERSSDPT  641 (833)
Q Consensus       563 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~  641 (833)
                      ++++|++.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|         
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L---------  177 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---------  177 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC---------
Confidence            9999999843332334468999999999999998888889999999999999999986 567777766665         


Q ss_pred             cccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCc
Q 048006          642 IKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQ  721 (833)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  721 (833)
                                             +.|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++|+
T Consensus       178 -----------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          178 -----------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             -----------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             -----------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence                                   999999999998889999999999999999999998888789999999999999999


Q ss_pred             CcccCCccccCCC-CCCEEECcCCcCccCCCCc
Q 048006          722 LVGGIPSSLSQLS-GLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       722 l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~~  753 (833)
                      +++..|..+..++ +|++|++++|+++|.++..
T Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~  267 (306)
T 2z66_A          235 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  267 (306)
T ss_dssp             CCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred             CcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence            9999999999985 9999999999999877644

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=6.2e-31  Score=304.68  Aligned_cols=337  Identities=16%  Similarity=0.171  Sum_probs=204.8

Q ss_pred             CCCCcccceEecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCC---CCCccccc-----------
Q 048006           43 RDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFS---GSPIPEFI-----------  108 (833)
Q Consensus        43 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~---~~~~p~~~-----------  108 (833)
                      .-|++|.++.+..  .+  .+.+..      ......+..+.++++|++|+|+++...   +. +|..+           
T Consensus        39 ~vck~W~~~~~~~--~~--~l~~~~------~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l  107 (592)
T 3ogk_B           39 LVCRRWFKIDSET--RE--HVTMAL------CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEI  107 (592)
T ss_dssp             TSCHHHHHHHHHH--CC--EEEESC------GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHH
T ss_pred             HHhHHHHHhhhcc--cc--EEEEee------ccccChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHH
Confidence            3466899986532  22  223332      223334455678899999999875321   11 22222           


Q ss_pred             -cCCCCCCEEEccCCCCCCCCCcccCCc--cccceecccCccCC-CCCCcccccCCCCCcEEecCCCCCCCCc--hhHHh
Q 048006          109 -GSLSKLRYLDLFGTVFAGPIPPQLGNL--SRLQHLDLGSNYLF-STGNLDWLSHLSYLRYLNLDESNLANSS--DWFQV  182 (833)
Q Consensus       109 -~~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~Ls~n~~~-~~~~~~~l~~l~~L~~L~Ls~n~~~~~~--~~~~~  182 (833)
                       ..+++|++|+|++|.+++..+..+...  .+|++|++++|... .........++++|++|++++|.+++..  .++..
T Consensus       108 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  187 (592)
T 3ogk_B          108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL  187 (592)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred             HhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence             278999999999998877666666664  44999999988621 1011122347889999999999876542  14555


Q ss_pred             hcCCCCCCEEEccCCCCCCCCCccc-cccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCcccc---cccccc
Q 048006          183 IGKLHSLKTLSLHSCYLPPVIPLSL-NHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQ---GSIPES  258 (833)
Q Consensus       183 l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~---~~~p~~  258 (833)
                      ...+++|++|++++|.+++.....+ .....+++|+.|++++|.+.+ ++..+..+++ |++|+++.....   +..+..
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAAN-LEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTT-CCEEEECBCCCCTTCTTSSSC
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhH-HHhhcccccccccchHHHHHH
Confidence            6778889999998888864322111 122334888888888887775 4566677777 888888753322   233455


Q ss_pred             ccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhh-HHHhhcCCccccCCccEEEcccccccccChhhh
Q 048006          259 FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLS-EIIQNLSSGCLENSLKSLYLENSLTGVISESFF  337 (833)
Q Consensus       259 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~  337 (833)
                      +..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..++      +|+.|++.++.........+
T Consensus       266 l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~------~L~~L~L~~~~~~~~l~~~~  338 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP------NLEVLETRNVIGDRGLEVLA  338 (592)
T ss_dssp             CCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT------TCCEEEEEGGGHHHHHHHHH
T ss_pred             hhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc------CCCEEeccCccCHHHHHHHH
Confidence            67777888888877543 3566777778888888888887665443 3345555      66666665333222222233


Q ss_pred             cCCCCCCEEECcC-----------CccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccc
Q 048006          338 SNISNLKELHLAN-----------NPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIP  406 (833)
Q Consensus       338 ~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~  406 (833)
                      ..+++|++|++++           |.++..                       .++.....+++|++|+++.|.+++..+
T Consensus       339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~~L~~L~l~~~~l~~~~~  395 (592)
T 3ogk_B          339 QYCKQLKRLRIERGADEQGMEDEEGLVSQR-----------------------GLIALAQGCQELEYMAVYVSDITNESL  395 (592)
T ss_dssp             HHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----------------------HHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred             HhCCCCCEEEeecCccccccccccCccCHH-----------------------HHHHHHhhCccCeEEEeecCCccHHHH
Confidence            4455566665552           222211                       112223456677777776677766655


Q ss_pred             hhHHhhcccccEEEcc
Q 048006          407 DWFWNLSNKFSFLDLA  422 (833)
Q Consensus       407 ~~~~~~~~~L~~L~L~  422 (833)
                      ..+....++|++|+++
T Consensus       396 ~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          396 ESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             HHHHHHCCSCCEEEEE
T ss_pred             HHHHhhCCCCcEEEEe
Confidence            5555544456666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=9.2e-28  Score=267.36  Aligned_cols=234  Identities=24%  Similarity=0.237  Sum_probs=203.0

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      +++++|++++|.+++..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            67888899999998888888999999999999999999888888999999999999999999887788999999999999


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCC-cccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSN-KFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK  643 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  643 (833)
                      ++|++. .+|...+..+++|++|++++| .+....+..+.++++|++|++++|++++. | .+..+              
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l--------------  217 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPL--------------  217 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTC--------------
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccc--------------
Confidence            999988 666655557899999999985 44444445688999999999999998743 3 24333              


Q ss_pred             cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006          644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV  723 (833)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  723 (833)
                                        ++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+++
T Consensus       218 ------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          218 ------------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             ------------------TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ------------------ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence                              34599999999999988999999999999999999999999999999999999999999999


Q ss_pred             ccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006          724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       724 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  753 (833)
                      +..+..+..+++|+.|++++|++.+.+...
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          280 SLPHDLFTPLRYLVELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             CCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred             ccChHHhccccCCCEEEccCCCcCCCCCch
Confidence            888888999999999999999999887643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.5e-27  Score=265.75  Aligned_cols=252  Identities=25%  Similarity=0.267  Sum_probs=220.4

Q ss_pred             cccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccC
Q 048006          486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG  565 (833)
Q Consensus       486 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  565 (833)
                      ....++.++..++ .+|..+.  +++++|+|++|.+++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            4567888888888 4565543  689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCC-ccccccccccccCCCCccccc
Q 048006          566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKD  644 (833)
Q Consensus       566 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~  644 (833)
                      +|+++ .+|...+..+++|++|+|++|++....+..+..+++|+.|++++|+..+.++ ..|..+++|            
T Consensus       132 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L------------  198 (452)
T 3zyi_A          132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL------------  198 (452)
T ss_dssp             SSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC------------
T ss_pred             CCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC------------
Confidence            99998 6666655579999999999999997777789999999999999955444443 456665555            


Q ss_pred             ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006          645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  724 (833)
                                          +.|+|++|++++ +| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++
T Consensus       199 --------------------~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  256 (452)
T 3zyi_A          199 --------------------KYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL  256 (452)
T ss_dssp             --------------------CEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred             --------------------CEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence                                999999999985 44 48899999999999999999999999999999999999999999


Q ss_pred             cCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCCC
Q 048006          725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLPL  775 (833)
Q Consensus       725 ~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~~  775 (833)
                      ..|..|..+++|+.|++++|++++..+.. ..+..+..+.+.+|||.|+|.+
T Consensus       257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            99999999999999999999999766654 4567788889999999999973

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=6e-28  Score=255.86  Aligned_cols=227  Identities=21%  Similarity=0.280  Sum_probs=196.5

Q ss_pred             CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006          484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD  563 (833)
Q Consensus       484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  563 (833)
                      .+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            378999999999998 67888888999999999999999 78888999999999999999999 7788899999999999


Q ss_pred             cCCCccCCCCCcchh--------hcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccccccccc
Q 048006          564 LGKNALYGEIPTWMG--------ESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE  635 (833)
Q Consensus       564 L~~n~l~~~~p~~~~--------~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  635 (833)
                      +++|++.+.+|..+.        ..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..+++|   
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L---  231 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL---  231 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence            999988889988764        14888999999999888 778888888899999999998884 55556665555   


Q ss_pred             CCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEE
Q 048006          636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFL  715 (833)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  715 (833)
                                                   +.|++++|++.+.+|..++.+++|++|+|++|++.+.+|..+.++++|+.|
T Consensus       232 -----------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L  282 (328)
T 4fcg_A          232 -----------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL  282 (328)
T ss_dssp             -----------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred             -----------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence                                         888999988888888888888999999999988888888888888999999


Q ss_pred             eCCCCcCcccCCccccCCCCCCEEECcCCcCc
Q 048006          716 DLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS  747 (833)
Q Consensus       716 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  747 (833)
                      +|++|++.+.+|..+.++++|+.+++..|.+.
T Consensus       283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             eCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999988889999999999999888877554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=6.4e-28  Score=251.25  Aligned_cols=248  Identities=22%  Similarity=0.170  Sum_probs=210.3

Q ss_pred             ccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCC
Q 048006          487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGK  566 (833)
Q Consensus       487 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  566 (833)
                      -++++.+++.++. +|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        13 ~~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           13 KVTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SCEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            3678888888874 45433  46899999999999988888899999999999999999988888999999999999999


Q ss_pred             Cc-cCCCC-CcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006          567 NA-LYGEI-PTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD  644 (833)
Q Consensus       567 n~-l~~~~-p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  644 (833)
                      |+ +. .+ |..+. .+++|++|++++|.+++..|..+..+++|++|++++|++.+..+..|..+++|            
T Consensus        90 n~~l~-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------  155 (285)
T 1ozn_A           90 NAQLR-SVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL------------  155 (285)
T ss_dssp             CTTCC-CCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCcc-ccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc------------
Confidence            97 66 55 44444 78999999999999998888889999999999999999987766667766666            


Q ss_pred             ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006          645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  724 (833)
                                          +.|++++|++++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++
T Consensus       156 --------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          156 --------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             --------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             --------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence                                899999999997777779999999999999999999999999999999999999999998


Q ss_pred             cCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCC
Q 048006          725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELC  771 (833)
Q Consensus       725 ~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc  771 (833)
                      ..+..+..+++|++|++++|++.+.++......++.......+...|
T Consensus       216 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c  262 (285)
T 1ozn_A          216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC  262 (285)
T ss_dssp             CCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBE
T ss_pred             CCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCcccc
Confidence            87788999999999999999999988765555555554444454433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.1e-28  Score=263.34  Aligned_cols=275  Identities=21%  Similarity=0.201  Sum_probs=162.9

Q ss_pred             eecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccc
Q 048006          444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSG  523 (833)
Q Consensus       444 l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  523 (833)
                      .+++++.++......+++++.|++++|++++..+.. ...+++|++|++++|.+++..+..|..+++|++|++++|++++
T Consensus        36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  114 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN  114 (353)
T ss_dssp             EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred             eeCCCCCcccccccccccCcEEECCCCcCcccCHHH-hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence            455555555443334445555555555554432211 1124556666666666655555555556666666666666654


Q ss_pred             cCCCCccCcCCccEEEcccCcCccccC-ccccCCCCCcEeccCCCc-cCCCCCcchhhcCCccceEEecCCccccccccc
Q 048006          524 RIPDSMGFLQNIQTLSLHNNRLTGELS-SSFRNCSQLRLLDLGKNA-LYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ  601 (833)
Q Consensus       524 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~  601 (833)
                      ..+..+..+++|++|++++|++++..+ ..|..+++|++|++++|. +. .++...+..+++|++|++++|.+++..|..
T Consensus       115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  193 (353)
T 2z80_A          115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKS  193 (353)
T ss_dssp             CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence            433335555666666666666553333 345556666666666653 33 333222224556666666666665555555


Q ss_pred             ccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchh
Q 048006          602 LCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEE  681 (833)
Q Consensus       602 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  681 (833)
                      +..+++|++|++++|++.. +|..                               +...+++|+.|++++|++++..+..
T Consensus       194 l~~l~~L~~L~l~~n~l~~-~~~~-------------------------------~~~~~~~L~~L~L~~n~l~~~~~~~  241 (353)
T 2z80_A          194 LKSIQNVSHLILHMKQHIL-LLEI-------------------------------FVDVTSSVECLELRDTDLDTFHFSE  241 (353)
T ss_dssp             TTTCSEEEEEEEECSCSTT-HHHH-------------------------------HHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred             HhccccCCeecCCCCcccc-chhh-------------------------------hhhhcccccEEECCCCccccccccc
Confidence            5566666666666665532 2211                               1223455688888888888765544


Q ss_pred             hh---cccCCcEEECCCccccc----cCCcccCCCCCCCEEeCCCCcCcccCCcc-ccCCCCCCEEECcCCcCccCCCCc
Q 048006          682 IM---DLVGLVALNLSKNHLTG----QISPKIGQLKSLDFLDLSRNQLVGGIPSS-LSQLSGLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       682 l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~~  753 (833)
                      +.   ....++.++|+++.+++    .+|+.+..+++|+.|++++|+++ .+|.. |..+++|++|++++|++.|.+|..
T Consensus       242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l  320 (353)
T 2z80_A          242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  320 (353)
T ss_dssp             -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence            43   35667888888887775    46777888889999999999998 44544 588889999999999998887743

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.9e-28  Score=261.23  Aligned_cols=274  Identities=20%  Similarity=0.209  Sum_probs=228.7

Q ss_pred             ceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEccc
Q 048006          463 SFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHN  542 (833)
Q Consensus       463 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  542 (833)
                      ...+.+++.++......    .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        34 ~~c~~~~~~l~~iP~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           34 GICKGSSGSLNSIPSGL----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             SEEECCSTTCSSCCTTC----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEeeCCCCCcccccccc----cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            44677788777543322    26899999999999987777899999999999999999988888899999999999999


Q ss_pred             CcCccccCccccCCCCCcEeccCCCccCCCCCc-chhhcCCccceEEecCC-cccccccccccCCCCCCEEeccCCcCcc
Q 048006          543 NRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT-WMGESLSNLIVLSLKSN-KFHGKIPFQLCQLAFLQVLDLSLNNISG  620 (833)
Q Consensus       543 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  620 (833)
                      |++++..+..|.++++|++|++++|++. .+|. ..+..+++|++|++++| .+.+..+..+.++++|+.|++++|++.+
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          110 NYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            9999766666899999999999999998 6776 44447999999999999 4776667889999999999999999998


Q ss_pred             cCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccc
Q 048006          621 KIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTG  700 (833)
Q Consensus       621 ~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  700 (833)
                      ..|..+..+++|                                ++|++++|+++...+..+..+++|++|++++|++++
T Consensus       189 ~~~~~l~~l~~L--------------------------------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          189 YEPKSLKSIQNV--------------------------------SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             ECTTTTTTCSEE--------------------------------EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             cCHHHHhccccC--------------------------------CeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence            888888777666                                999999999974444445669999999999999998


Q ss_pred             cCCcccC---CCCCCCEEeCCCCcCcc----cCCccccCCCCCCEEECcCCcCccCCCCc--cccCccccccccCCCCCC
Q 048006          701 QISPKIG---QLKSLDFLDLSRNQLVG----GIPSSLSQLSGLSVMDLSYNNLSGKIPTV--TQLQSFNDTVYAGNPELC  771 (833)
Q Consensus       701 ~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~l~~~~~~gn~~lc  771 (833)
                      ..+..+.   ..+.++.++++++.+++    .+|+.+..+++|++|++++|+++ .+|..  ..+..+..+.+.+||+.|
T Consensus       237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence            7666544   36788999999999887    47888999999999999999999 45543  567788889999999999


Q ss_pred             CCC
Q 048006          772 GLP  774 (833)
Q Consensus       772 ~~~  774 (833)
                      +|+
T Consensus       316 ~~~  318 (353)
T 2z80_A          316 SCP  318 (353)
T ss_dssp             CHH
T ss_pred             cCC
Confidence            885

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=8.9e-28  Score=253.05  Aligned_cols=251  Identities=22%  Similarity=0.239  Sum_probs=219.5

Q ss_pred             ccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccc--cCccccCCCCCcEecc
Q 048006          487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGE--LSSSFRNCSQLRLLDL  564 (833)
Q Consensus       487 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L  564 (833)
                      -+.++.+++.++ .+|..+.  ++|++|++++|.++...+..|..+++|++|++++|+++..  .+..+..+++|++|++
T Consensus         9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            357888888888 4555443  6899999999999966666689999999999999999843  3667788999999999


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCccccccc-ccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP-FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK  643 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  643 (833)
                      ++|.+. .+|..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+..+++|           
T Consensus        86 s~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  152 (306)
T 2z66_A           86 SFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-----------  152 (306)
T ss_dssp             CSCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-----------
T ss_pred             CCCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-----------
Confidence            999998 7887766 69999999999999997655 578999999999999999998888888777666           


Q ss_pred             cceEEeeccCcchhccccCcccEEEccCCcCCC-CCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcC
Q 048006          644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG-AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL  722 (833)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  722 (833)
                                           ++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|+.|+|++|++
T Consensus       153 ---------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  211 (306)
T 2z66_A          153 ---------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF  211 (306)
T ss_dssp             ---------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ---------------------CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence                                 999999999986 5788899999999999999999998899999999999999999999


Q ss_pred             cccCCccccCCCCCCEEECcCCcCccCCCCc-ccc-CccccccccCCCCCCCCC
Q 048006          723 VGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQL-QSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       723 ~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~-~~l~~~~~~gn~~lc~~~  774 (833)
                      ++..+..+..+++|++|++++|++++.+|.. ..+ ..+..+++.||++.|+|+
T Consensus       212 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            9888888999999999999999999988865 333 467888899999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=5.4e-27  Score=260.16  Aligned_cols=251  Identities=24%  Similarity=0.273  Sum_probs=169.3

Q ss_pred             cccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccC
Q 048006          486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG  565 (833)
Q Consensus       486 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  565 (833)
                      ....++.++..++ .+|..+.  ++++.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            3456667766666 3454443  467777777777776666777777777777777777776666777777777777777


Q ss_pred             CCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccC-CccccccccccccCCCCccccc
Q 048006          566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI-PKCFNNFTAMTQERSSDPTIKD  644 (833)
Q Consensus       566 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~l~~~~~~~~~  644 (833)
                      +|+++ .+|...+..+++|++|++++|++....+..+..+++|+.|++++|+..+.+ +..|.++++|            
T Consensus       121 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L------------  187 (440)
T 3zyj_A          121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL------------  187 (440)
T ss_dssp             SSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC------------
T ss_pred             CCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc------------
Confidence            77776 555443445777777777777777666666777777777777774433333 3345444444            


Q ss_pred             ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006          645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  724 (833)
                                          +.|++++|+++ .+| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++
T Consensus       188 --------------------~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  245 (440)
T 3zyj_A          188 --------------------RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV  245 (440)
T ss_dssp             --------------------CEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             --------------------CeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence                                77777777776 344 36667777777777777777777777777777777777777777


Q ss_pred             cCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCC
Q 048006          725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       725 ~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      ..|..|..+++|+.|++++|++++..+.. ..+..+..+.+.+|||.|+|.
T Consensus       246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            77777777777777777777777555443 345556666677777777764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=8.7e-29  Score=286.64  Aligned_cols=351  Identities=17%  Similarity=0.123  Sum_probs=190.3

Q ss_pred             CCCCCEEEccCCcCCCCCCCccccc-ccCCcEEEccCcc-ccc-cccccccCCCCCcEEECcCCccccc----ccccccC
Q 048006          213 STSLETLVLSDNNLTSSIYPWLPNI-SSIFISIDLGFNQ-LQG-SIPESFQHMVYLEHLRLSFNELEGG----IPKFFGN  285 (833)
Q Consensus       213 ~~~L~~L~Ls~n~l~~~~~~~l~~l-~~~L~~L~Ls~n~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~  285 (833)
                      +++|++|+|++|.+++..+..+... +..|++|++++|. ++. .++.....+++|++|+|++|.+++.    ++..+..
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  190 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH  190 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence            3666666666666655444444443 1126777776665 211 1222334677888888888877655    3334556


Q ss_pred             CCCCcEEEccCCCCC----chhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccc---cccC
Q 048006          286 MCSLITLNLSNNKLS----GQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLV---LKLS  358 (833)
Q Consensus       286 l~~L~~L~Ls~n~l~----~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~---~~~~  358 (833)
                      +++|++|++++|.++    +.++..+..++      +|+.|++.++.+..++. .+..+++|++|+++.....   ....
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~------~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~  263 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCR------SLVSVKVGDFEILELVG-FFKAAANLEEFCGGSLNEDIGMPEKY  263 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCT------TCCEEECSSCBGGGGHH-HHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCC------CCcEEeccCccHHHHHH-HHhhhhHHHhhcccccccccchHHHH
Confidence            778888888888876    34555566666      78888886666666664 5777888888888753222   2223


Q ss_pred             CCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccc-cCCcccccc
Q 048006          359 HDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKG-KLPNLSSRF  437 (833)
Q Consensus       359 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~~~~~  437 (833)
                      ..+..+++|+.+.++++. ...+|..+..+++|++|++++|.+++.....+....++|++|+++ +.+.. .++..    
T Consensus       264 ~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~----  337 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL----  337 (592)
T ss_dssp             SCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH----
T ss_pred             HHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH----
Confidence            345556677777776643 235666677777777777777776554443333333456666665 22221 11100    


Q ss_pred             CCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCC-----------CcCcCC-CCCcc
Q 048006          438 GTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSS-----------NLLSGK-LPDCW  505 (833)
Q Consensus       438 ~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~-----------n~l~~~-~~~~~  505 (833)
                                                                 ...+++|++|++++           +.+++. ++..+
T Consensus       338 -------------------------------------------~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~  374 (592)
T 3ogk_B          338 -------------------------------------------AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA  374 (592)
T ss_dssp             -------------------------------------------HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred             -------------------------------------------HHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence                                                       00134555555552           333321 11112


Q ss_pred             cCCCCCcEEEccCCcccccCCCCccC-cCCccEEEcc----cCcCccc-----cCccccCCCCCcEeccCCCc--cCCCC
Q 048006          506 WTFDSLVILNLENNSFSGRIPDSMGF-LQNIQTLSLH----NNRLTGE-----LSSSFRNCSQLRLLDLGKNA--LYGEI  573 (833)
Q Consensus       506 ~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~  573 (833)
                      ..+++|++|+++.|.+++..+..+.. +++|++|+++    .|.+++.     ++..+.++++|++|++++|.  +++..
T Consensus       375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred             hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence            33555666666555555444333333 5556666664    3444432     22234455666666665433  33333


Q ss_pred             CcchhhcCCccceEEecCCcccc-cccccccCCCCCCEEeccCCcCc
Q 048006          574 PTWMGESLSNLIVLSLKSNKFHG-KIPFQLCQLAFLQVLDLSLNNIS  619 (833)
Q Consensus       574 p~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~  619 (833)
                      +..+...+++|++|++++|.+++ .++..+..+++|++|++++|+++
T Consensus       455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence            33444345556666666665553 22333445555666666666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=4.1e-27  Score=245.09  Aligned_cols=235  Identities=22%  Similarity=0.238  Sum_probs=197.3

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCc-CccccCccccCCCCCcEec
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR-LTGELSSSFRNCSQLRLLD  563 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  563 (833)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. +....+..|..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            678889999999888777888999999999999999998888889999999999999997 7777788899999999999


Q ss_pred             cCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006          564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK  643 (833)
Q Consensus       564 L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  643 (833)
                      +++|++.+..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|           
T Consensus       112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  179 (285)
T 1ozn_A          112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-----------  179 (285)
T ss_dssp             CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred             CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc-----------
Confidence            999999854455444 68999999999999997777778899999999999999987666667666665           


Q ss_pred             cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006          644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV  723 (833)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  723 (833)
                                           +.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus       180 ---------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          180 ---------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ---------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ---------------------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence                                 89999999999888999999999999999999999877777999999999999999998


Q ss_pred             ccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006          724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       724 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  753 (833)
                      ...+.. .-...++.++.+.+.+.|..|..
T Consensus       239 c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          239 CDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             CSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             CCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            654321 11133555667889999988864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=8.5e-28  Score=253.40  Aligned_cols=203  Identities=24%  Similarity=0.240  Sum_probs=112.9

Q ss_pred             CCCCCcEEEccCCcccccCCCCc--cCcCCccEEEcccCcCccccCccccCC-----CCCcEeccCCCccCCCCCcchhh
Q 048006          507 TFDSLVILNLENNSFSGRIPDSM--GFLQNIQTLSLHNNRLTGELSSSFRNC-----SQLRLLDLGKNALYGEIPTWMGE  579 (833)
Q Consensus       507 ~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~~  579 (833)
                      .+++|++|++++|.+++.+|..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..|..+. 
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-
Confidence            35555555555555555555443  4555555555555555544 4444444     5555555555555533333333 


Q ss_pred             cCCccceEEecCCccccc--ccccc--cCCCCCCEEeccCCcCccc--CC-ccccccccccccCCCCcccccceEEeecc
Q 048006          580 SLSNLIVLSLKSNKFHGK--IPFQL--CQLAFLQVLDLSLNNISGK--IP-KCFNNFTAMTQERSSDPTIKDKLMLTWKG  652 (833)
Q Consensus       580 ~l~~L~~L~L~~N~l~~~--~~~~l--~~l~~L~~L~Ls~N~l~~~--~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  652 (833)
                      .+++|++|++++|++.+.  .+..+  ..+++|++|++++|++++.  ++ ..+.                         
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------------------------  225 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA-------------------------  225 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH-------------------------
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh-------------------------
Confidence            455555555555555433  12222  5556666666666665521  11 1111                         


Q ss_pred             CcchhccccCcccEEEccCCcCCCCCc-hhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCcccc
Q 048006          653 SEREYRSTLGLVKSLELSNNNLNGAVP-EEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLS  731 (833)
Q Consensus       653 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  731 (833)
                             .+++|+.|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|++|||++|++++. |. +.
T Consensus       226 -------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~  293 (312)
T 1wwl_A          226 -------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PD  293 (312)
T ss_dssp             -------TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TT
T ss_pred             -------cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-Hh
Confidence                   22334666677776666553 34455667777777777776 5666555  6777777777777755 44 66


Q ss_pred             CCCCCCEEECcCCcCcc
Q 048006          732 QLSGLSVMDLSYNNLSG  748 (833)
Q Consensus       732 ~l~~L~~L~ls~N~l~g  748 (833)
                      .+++|++|++++|++++
T Consensus       294 ~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          294 ELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TSCEEEEEECTTCTTTC
T ss_pred             hCCCCCEEeccCCCCCC
Confidence            77777777777777664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.1e-25  Score=256.35  Aligned_cols=293  Identities=22%  Similarity=0.213  Sum_probs=174.2

Q ss_pred             CCCCCCCCCCCCCCCCcccceEec------CCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCc
Q 048006           31 GVLSSWGPEDEKRDCCKWTGLRCS------NKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPI  104 (833)
Q Consensus        31 ~~~~~w~~~~~~~~~c~w~gv~c~------~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~  104 (833)
                      ...+.|.   .+.+||.|+|..|.      -....++.|++++     +.++ .+|..+.  ++|++|+|++|.++.  +
T Consensus        10 ~~w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~-----n~L~-~lp~~l~--~~L~~L~L~~N~l~~--l   76 (622)
T 3g06_A           10 AVWSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGE-----SGLT-TLPDCLP--AHITTLVIPDNNLTS--L   76 (622)
T ss_dssp             CHHHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCS-----SCCS-CCCSCCC--TTCSEEEECSCCCSC--C
T ss_pred             HHHHHHH---hcCCcchhccccccCcccccccCCCCcEEEecC-----CCcC-ccChhhC--CCCcEEEecCCCCCC--C
Confidence            3455676   46789999775321      0123466777777     4554 5555554  677777777777773  5


Q ss_pred             cccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhc
Q 048006          105 PEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIG  184 (833)
Q Consensus       105 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~  184 (833)
                      |.   .+++|++|+|++|.++ .+|.   .+++|++|++++|.+.....     .+++|++|++++|.++.++.      
T Consensus        77 p~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~------  138 (622)
T 3g06_A           77 PA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV------  138 (622)
T ss_dssp             CC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC------
T ss_pred             CC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC------
Confidence            54   4677777777777776 3554   56777777777777653211     45666666666666665422      


Q ss_pred             CCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCC
Q 048006          185 KLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVY  264 (833)
Q Consensus       185 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~  264 (833)
                      .+++|++|++++|.+.+. |.      .+++|+.|++++|.+++ +|   ..+++ |+.|++++|.+++ +|.   .+++
T Consensus       139 ~l~~L~~L~Ls~N~l~~l-~~------~~~~L~~L~L~~N~l~~-l~---~~~~~-L~~L~Ls~N~l~~-l~~---~~~~  202 (622)
T 3g06_A          139 LPPGLQELSVSDNQLASL-PA------LPSELCKLWAYNNQLTS-LP---MLPSG-LQELSVSDNQLAS-LPT---LPSE  202 (622)
T ss_dssp             CCTTCCEEECCSSCCSCC-CC------CCTTCCEEECCSSCCSC-CC---CCCTT-CCEEECCSSCCSC-CCC---CCTT
T ss_pred             CCCCCCEEECcCCcCCCc-CC------ccCCCCEEECCCCCCCC-Cc---ccCCC-CcEEECCCCCCCC-CCC---ccch
Confidence            235666666666655542 21      11455555555555553 22   11222 4555555555543 222   1244


Q ss_pred             CcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCC
Q 048006          265 LEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLK  344 (833)
Q Consensus       265 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~  344 (833)
                      |+.|++++|.++. +|..   ++                              +|+.|++++|.+..+|    ..+++|+
T Consensus       203 L~~L~L~~N~l~~-l~~~---~~------------------------------~L~~L~Ls~N~L~~lp----~~l~~L~  244 (622)
T 3g06_A          203 LYKLWAYNNRLTS-LPAL---PS------------------------------GLKELIVSGNRLTSLP----VLPSELK  244 (622)
T ss_dssp             CCEEECCSSCCSS-CCCC---CT------------------------------TCCEEECCSSCCSCCC----CCCTTCC
T ss_pred             hhEEECcCCcccc-cCCC---CC------------------------------CCCEEEccCCccCcCC----CCCCcCc
Confidence            4555555554442 2221   23                              4555555444444444    2456777


Q ss_pred             EEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhc
Q 048006          345 ELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLS  413 (833)
Q Consensus       345 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~  413 (833)
                      +|++++|.+.... .   .+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..|..+..+.
T Consensus       245 ~L~Ls~N~L~~lp-~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          245 ELMVSGNRLTSLP-M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             EEECCSSCCSCCC-C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             EEECCCCCCCcCC-c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            7777777776432 2   4567888888888887 6688899999999999999999988888776653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.2e-26  Score=259.47  Aligned_cols=244  Identities=23%  Similarity=0.243  Sum_probs=197.0

Q ss_pred             CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006          484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD  563 (833)
Q Consensus       484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  563 (833)
                      +++|++|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            3689999999999998888899999999999999999997766  8899999999999999986543     38999999


Q ss_pred             cCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccc-ccccccccCCCCccc
Q 048006          564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN-NFTAMTQERSSDPTI  642 (833)
Q Consensus       564 L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~~~~~~~  642 (833)
                      +++|.+.+. +..   .+++|++|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .++.|          
T Consensus       106 L~~N~l~~~-~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L----------  171 (487)
T 3oja_A          106 AANNNISRV-SCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL----------  171 (487)
T ss_dssp             CCSSCCCCE-EEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC----------
T ss_pred             CcCCcCCCC-Ccc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc----------
Confidence            999999844 332   367899999999999988888899999999999999999987777664 45555          


Q ss_pred             ccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcC
Q 048006          643 KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL  722 (833)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  722 (833)
                                            +.|+|++|.+++. |. +..+++|++|+|++|.+++. |..+..+++|+.|+|++|.+
T Consensus       172 ----------------------~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          172 ----------------------EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKL  226 (487)
T ss_dssp             ----------------------CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCC
T ss_pred             ----------------------cEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcC
Confidence                                  8999999999865 32 44689999999999999965 45588999999999999999


Q ss_pred             cccCCccccCCCCCCEEECcCCcCc-cCCCCc-cccCcccccccc-------CCCCCCCCC
Q 048006          723 VGGIPSSLSQLSGLSVMDLSYNNLS-GKIPTV-TQLQSFNDTVYA-------GNPELCGLP  774 (833)
Q Consensus       723 ~~~~p~~l~~l~~L~~L~ls~N~l~-g~ip~~-~~~~~l~~~~~~-------gn~~lc~~~  774 (833)
                      ++ +|..+..+++|+.|++++|++. +.+|.. ..+..+..+...       +|++.|.++
T Consensus       227 ~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          227 VL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             CE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             cc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence            95 6778889999999999999998 333322 222222222222       677877664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.6e-27  Score=247.81  Aligned_cols=245  Identities=27%  Similarity=0.336  Sum_probs=202.8

Q ss_pred             CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCccc-ccCCCCcc-------CcCCccEEEcccCcCccccCccc--
Q 048006          484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFS-GRIPDSMG-------FLQNIQTLSLHNNRLTGELSSSF--  553 (833)
Q Consensus       484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--  553 (833)
                      .++|+++++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       ++++|++|++++|++++.+|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            36788889999998  567655554  899999999984 44555444       68999999999999999888876  


Q ss_pred             cCCCCCcEeccCCCccCCCCCcchhhcC-----CccceEEecCCcccccccccccCCCCCCEEeccCCcCcccC--Cccc
Q 048006          554 RNCSQLRLLDLGKNALYGEIPTWMGESL-----SNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI--PKCF  626 (833)
Q Consensus       554 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l-----~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~~~  626 (833)
                      ..+++|++|++++|++++. |..+. .+     ++|++|++++|++.+..|..+..+++|++|++++|++.+.+  |..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            8999999999999999955 76665 35     89999999999999888899999999999999999987642  2222


Q ss_pred             --cccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCC--CCc-hhhhcccCCcEEECCCcccccc
Q 048006          627 --NNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG--AVP-EEIMDLVGLVALNLSKNHLTGQ  701 (833)
Q Consensus       627 --~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~  701 (833)
                        ..++                                +|++|++++|++++  .++ ..+..+++|++|+|++|++++.
T Consensus       196 ~~~~l~--------------------------------~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  243 (312)
T 1wwl_A          196 CPLKFP--------------------------------TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA  243 (312)
T ss_dssp             CTTSCT--------------------------------TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred             HhccCC--------------------------------CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence              4444                                45999999999983  222 3446789999999999999988


Q ss_pred             CC-cccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCC
Q 048006          702 IS-PKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPEL  770 (833)
Q Consensus       702 ~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~l  770 (833)
                      +| ..+..+++|++|+|++|+++ .+|..+.  ++|++||+++|++++. |....+..+..+++.+|+..
T Consensus       244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          244 AGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred             cchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence            75 56777899999999999999 7788776  8999999999999987 66777788888889999763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=5.4e-27  Score=247.85  Aligned_cols=221  Identities=24%  Similarity=0.240  Sum_probs=142.4

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      ++|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|++|++++|++++..+..   +++|++|++
T Consensus        58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l  127 (317)
T 3o53_A           58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYL  127 (317)
T ss_dssp             TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEEC
T ss_pred             CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEEC
Confidence            455556666665554433  556666666666666666432     2356677777777666554432   456777777


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCccccccccccc-CCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLC-QLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK  643 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  643 (833)
                      ++|++++..|..+. .+++|++|++++|.+++..+..+. .+++|++|++++|.+++. |. ...               
T Consensus       128 ~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~---------------  189 (317)
T 3o53_A          128 ANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVV---------------  189 (317)
T ss_dssp             CSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCC---------------
T ss_pred             CCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccc---------------
Confidence            77777633333333 567777777777777765555553 567777777777777643 11 111               


Q ss_pred             cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006          644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV  723 (833)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  723 (833)
                                       +++|+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++.
T Consensus       190 -----------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          190 -----------------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             -----------------CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             -----------------cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence                             2344777888887774 4445777888888888888887 46777777888888888888887


Q ss_pred             -ccCCccccCCCCCCEEECc-CCcCccCCCC
Q 048006          724 -GGIPSSLSQLSGLSVMDLS-YNNLSGKIPT  752 (833)
Q Consensus       724 -~~~p~~l~~l~~L~~L~ls-~N~l~g~ip~  752 (833)
                       +.+|..+..++.|+.++++ .+.+.|..|.
T Consensus       251 ~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CcCHHHHHhccccceEEECCCchhccCCchh
Confidence             6677777777778888777 3355555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=6.9e-25  Score=227.08  Aligned_cols=229  Identities=22%  Similarity=0.188  Sum_probs=182.6

Q ss_pred             EEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCc
Q 048006          489 YVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNA  568 (833)
Q Consensus       489 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  568 (833)
                      .++..+..++ .+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            3455555555 3454443  468888888888887777778888888888888888887777788888888888888888


Q ss_pred             cCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCccc-CCccccccccccccCCCCcccccceE
Q 048006          569 LYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK-IPKCFNNFTAMTQERSSDPTIKDKLM  647 (833)
Q Consensus       569 l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~~~~~~~~~~~~  647 (833)
                      +.+..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|++.+. +|..|.++++|               
T Consensus        88 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L---------------  151 (276)
T 2z62_A           88 IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL---------------  151 (276)
T ss_dssp             CCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC---------------
T ss_pred             cCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC---------------
Confidence            8744444444 688888888888888876666788889999999999998763 57777776666               


Q ss_pred             EeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCc----EEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006          648 LTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLV----ALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV  723 (833)
Q Consensus       648 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  723 (833)
                                       +.|++++|++++..+..+..+++|+    +|++++|.+++..+..+. ..+|+.|+|++|+++
T Consensus       152 -----------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~  213 (276)
T 2z62_A          152 -----------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLK  213 (276)
T ss_dssp             -----------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCS
T ss_pred             -----------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCcee
Confidence                             8899999999887778888877777    899999999976665555 458999999999999


Q ss_pred             ccCCccccCCCCCCEEECcCCcCccCCCCcc
Q 048006          724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTVT  754 (833)
Q Consensus       724 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~  754 (833)
                      +..+..+..+++|+.|++++|+++|.+|...
T Consensus       214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          214 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             CCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             ecCHhHhcccccccEEEccCCcccccCCchH
Confidence            8877788999999999999999999998653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=5.7e-26  Score=239.98  Aligned_cols=242  Identities=22%  Similarity=0.233  Sum_probs=197.0

Q ss_pred             CceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcc
Q 048006          462 SSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLH  541 (833)
Q Consensus       462 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  541 (833)
                      ++..+++.+.+...+..... .+++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQ-SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHT-TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhc-cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            45566777766544433322 25789999999999998877889999999999999999987665  8889999999999


Q ss_pred             cCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCccc
Q 048006          542 NNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK  621 (833)
Q Consensus       542 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  621 (833)
                      +|++++..     ..++|++|++++|++.+ ++..   .+++|++|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            99998543     34899999999999984 4432   367899999999999988788888999999999999999876


Q ss_pred             CCcccc-ccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccc
Q 048006          622 IPKCFN-NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTG  700 (833)
Q Consensus       622 ~p~~~~-~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  700 (833)
                      .|..+. .+++                                |+.|++++|++++. +. ...+++|++|+|++|++++
T Consensus       160 ~~~~~~~~l~~--------------------------------L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~  205 (317)
T 3o53_A          160 NFAELAASSDT--------------------------------LEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF  205 (317)
T ss_dssp             EGGGGGGGTTT--------------------------------CCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred             cHHHHhhccCc--------------------------------CCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc
Confidence            665543 3444                                49999999999854 33 3458999999999999995


Q ss_pred             cCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCc-cCCC
Q 048006          701 QISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS-GKIP  751 (833)
Q Consensus       701 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-g~ip  751 (833)
                       +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++. +.+|
T Consensus       206 -l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~  255 (317)
T 3o53_A          206 -MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR  255 (317)
T ss_dssp             -ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred             -chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence             4556999999999999999999 57888999999999999999998 4444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=5.2e-24  Score=242.57  Aligned_cols=262  Identities=26%  Similarity=0.285  Sum_probs=183.3

Q ss_pred             ccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCC
Q 048006          416 FSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSN  495 (833)
Q Consensus       416 L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n  495 (833)
                      ++.|++++|.++ .+|...   .++++.|++++|.++. +|..+++|+.|++++|++++...     .+++|++|++++|
T Consensus        42 l~~L~ls~n~L~-~lp~~l---~~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N  111 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSN  111 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCC---CTTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSC
T ss_pred             CcEEEecCCCcC-ccChhh---CCCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCC
Confidence            455555555554 233211   1345555555555543 23345667777777776664222     2477888888888


Q ss_pred             cCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCc
Q 048006          496 LLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT  575 (833)
Q Consensus       496 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  575 (833)
                      .+++. |.   .+++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   ..++|+.|++++|+++ .+|.
T Consensus       112 ~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~  178 (622)
T 3g06_A          112 PLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLPM  178 (622)
T ss_dssp             CCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC
T ss_pred             cCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCcc
Confidence            88753 33   46778888888888875 4443   4778888888888875 333   3467888888888887 5762


Q ss_pred             chhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcc
Q 048006          576 WMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSER  655 (833)
Q Consensus       576 ~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  655 (833)
                          .+++|+.|++++|.+++ +|..   +++|+.|++++|.++ .+|..                              
T Consensus       179 ----~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~------------------------------  219 (622)
T 3g06_A          179 ----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL------------------------------  219 (622)
T ss_dssp             ----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC------------------------------
T ss_pred             ----cCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC------------------------------
Confidence                46788888888888874 4432   467888888888886 33322                              


Q ss_pred             hhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCC
Q 048006          656 EYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSG  735 (833)
Q Consensus       656 ~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  735 (833)
                           +++|+.|++++|++++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+.++++
T Consensus       220 -----~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~  285 (622)
T 3g06_A          220 -----PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSS  285 (622)
T ss_dssp             -----CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCT
T ss_pred             -----CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccc
Confidence                 2345889999999985 56   55688999999999998 4565   5688999999999999 77888999999


Q ss_pred             CCEEECcCCcCccCCCCc
Q 048006          736 LSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       736 L~~L~ls~N~l~g~ip~~  753 (833)
                      |+.|++++|++++.+|..
T Consensus       286 L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          286 ETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             TCEEECCSCCCCHHHHHH
T ss_pred             cCEEEecCCCCCCcCHHH
Confidence            999999999999877753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.3e-25  Score=249.09  Aligned_cols=222  Identities=22%  Similarity=0.156  Sum_probs=194.2

Q ss_pred             cCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccc
Q 048006          506 WTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLI  585 (833)
Q Consensus       506 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  585 (833)
                      ..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|  |..+++|++|++++|.++ .+|.     .++|+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~  102 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIE  102 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCC
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcC
Confidence            345589999999999999888899999999999999999998766  899999999999999998 4543     48999


Q ss_pred             eEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCccc
Q 048006          586 VLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVK  665 (833)
Q Consensus       586 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  665 (833)
                      +|++++|.+++..+.   .+++|+.|++++|.+++..|..|+.+++|                                +
T Consensus       103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------------------------------~  147 (487)
T 3oja_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV--------------------------------Q  147 (487)
T ss_dssp             EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE--------------------------------E
T ss_pred             EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC--------------------------------C
Confidence            999999999976654   46889999999999998888888777666                                9


Q ss_pred             EEEccCCcCCCCCchhhh-cccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006          666 SLELSNNNLNGAVPEEIM-DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN  744 (833)
Q Consensus       666 ~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  744 (833)
                      .|+|++|.+++.+|..+. .+++|++|+|++|.+++..  .+..+++|+.|+|++|++++.+| .+..+++|+.|++++|
T Consensus       148 ~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN  224 (487)
T ss_dssp             EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS
T ss_pred             EEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCC
Confidence            999999999998888886 7999999999999999773  34569999999999999997655 5899999999999999


Q ss_pred             cCccCCCCccccCccccccccCCCCCCCC
Q 048006          745 NLSGKIPTVTQLQSFNDTVYAGNPELCGL  773 (833)
Q Consensus       745 ~l~g~ip~~~~~~~l~~~~~~gn~~lc~~  773 (833)
                      ++++.++....+..+..+++.||++.|++
T Consensus       225 ~l~~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          225 KLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             CCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             cCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence            99986555566778888899999999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=6.8e-24  Score=218.58  Aligned_cols=186  Identities=27%  Similarity=0.312  Sum_probs=132.1

Q ss_pred             CccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEec
Q 048006          534 NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDL  613 (833)
Q Consensus       534 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L  613 (833)
                      ++++|++++|++++..+..|.++++|++|++++|+++ .+|...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            4455555555555444444555555555555555554 444444334555666666666655544455666677777777


Q ss_pred             cCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEEC
Q 048006          614 SLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNL  693 (833)
Q Consensus       614 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  693 (833)
                      ++|++++..+..|..+++|                                +.|++++|++++..+..|..+++|++|+|
T Consensus       117 ~~n~l~~~~~~~~~~l~~L--------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKL--------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRL  164 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTC--------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCccCeeCHHHhCcCcCC--------------------------------CEEECCCCcCCccCHhHccCCcccceeEe
Confidence            7777776666666555555                                77888888887666666888899999999


Q ss_pred             CCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCC
Q 048006          694 SKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPT  752 (833)
Q Consensus       694 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  752 (833)
                      ++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            99999987777899999999999999999987777899999999999999999988764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.4e-27  Score=274.68  Aligned_cols=111  Identities=14%  Similarity=0.077  Sum_probs=53.6

Q ss_pred             ccCCCCCcEEEccCCcccccCCCCccC-cCCccEEEcccCcCccccCccc-cCCCCCcEeccCCCccCCCCCcchhhcCC
Q 048006          505 WWTFDSLVILNLENNSFSGRIPDSMGF-LQNIQTLSLHNNRLTGELSSSF-RNCSQLRLLDLGKNALYGEIPTWMGESLS  582 (833)
Q Consensus       505 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  582 (833)
                      +..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++.....+ ..+++|++|++++|++++.....+...++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            34455666666654 444332223332 5556666666666554333333 44566666666666654322222333455


Q ss_pred             ccceEEecCCcccccccccc-cCCCCCCEEeccCC
Q 048006          583 NLIVLSLKSNKFHGKIPFQL-CQLAFLQVLDLSLN  616 (833)
Q Consensus       583 ~L~~L~L~~N~l~~~~~~~l-~~l~~L~~L~Ls~N  616 (833)
                      +|++|++++|+++......+ ..++.|+...+..+
T Consensus       507 ~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            66666666665543222222 33455544444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=7.1e-27  Score=270.77  Aligned_cols=31  Identities=3%  Similarity=0.023  Sum_probs=17.9

Q ss_pred             EEEccCCCCCCCCCcccCCccccceecccCcc
Q 048006          116 YLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNY  147 (833)
Q Consensus       116 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  147 (833)
                      .++++.+... ..+..+.++++|++|+++++.
T Consensus        47 ~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~   77 (594)
T 2p1m_B           47 KVFIGNCYAV-SPATVIRRFPKVRSVELKGKP   77 (594)
T ss_dssp             EEEESSTTSS-CHHHHHHHCTTCCEEEEECSC
T ss_pred             EEeecccccc-CHHHHHhhCCCceEEeccCCC
Confidence            4555554322 122345667778888888765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=5.3e-24  Score=220.40  Aligned_cols=225  Identities=25%  Similarity=0.276  Sum_probs=191.2

Q ss_pred             EEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCC
Q 048006          513 ILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN  592 (833)
Q Consensus       513 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N  592 (833)
                      ..+..+..+. .+|..+.  ++|++|++++|++++..+..|.++++|++|++++|++. .++...+..+++|++|++++|
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence            4556666666 4565443  57999999999999888889999999999999999998 555544447999999999999


Q ss_pred             cccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCC
Q 048006          593 KFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNN  672 (833)
Q Consensus       593 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  672 (833)
                      .+++..+..+.++++|++|++++|++.+..+..+..+++|                                ++|++++|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------~~L~l~~n  134 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL--------------------------------KELNVAHN  134 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC--------------------------------CEEECCSS
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC--------------------------------CEEECcCC
Confidence            9998888899999999999999999987766667666665                                99999999


Q ss_pred             cCCCC-CchhhhcccCCcEEECCCccccccCCcccCCCCCCC----EEeCCCCcCcccCCccccCCCCCCEEECcCCcCc
Q 048006          673 NLNGA-VPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLD----FLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS  747 (833)
Q Consensus       673 ~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  747 (833)
                      ++++. +|..+..+++|++|++++|++++..+..+..+++|+    .|++++|++++..+..+.. .+|+.|++++|+++
T Consensus       135 ~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~  213 (276)
T 2z62_A          135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLK  213 (276)
T ss_dssp             CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCS
T ss_pred             ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCcee
Confidence            99874 699999999999999999999988888888777777    9999999999777666654 48999999999999


Q ss_pred             cCCCCc-cccCccccccccCCCCCCCCC
Q 048006          748 GKIPTV-TQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       748 g~ip~~-~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      +..+.. ..+..+..+.+.+||+.|+|+
T Consensus       214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          214 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ecCHhHhcccccccEEEccCCcccccCC
Confidence            776654 567788888999999999986

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.2e-23  Score=216.46  Aligned_cols=207  Identities=23%  Similarity=0.248  Sum_probs=157.6

Q ss_pred             ccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCcc
Q 048006          505 WWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNL  584 (833)
Q Consensus       505 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  584 (833)
                      +..+++++++++++|.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.++ .++..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence            445566666666666666 3343332  56777777777777666667777777777777777776 44433  257778


Q ss_pred             ceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcc
Q 048006          585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLV  664 (833)
Q Consensus       585 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  664 (833)
                      ++|++++|+++ .+|..+..+++|++|++++|++++..|..|..+++|                                
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------  126 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------  126 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence            88888888777 566677788888888888888887666777766666                                


Q ss_pred             cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006          665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN  744 (833)
Q Consensus       665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  744 (833)
                      +.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.+++++|
T Consensus       127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence            88888888888777777888999999999999999766667888999999999999998 67888888889999999999


Q ss_pred             cCccCCC
Q 048006          745 NLSGKIP  751 (833)
Q Consensus       745 ~l~g~ip  751 (833)
                      ++.+.+.
T Consensus       206 p~~C~c~  212 (290)
T 1p9a_G          206 PWLCNCE  212 (290)
T ss_dssp             CBCCSGG
T ss_pred             CccCcCc
Confidence            9987653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=2.8e-23  Score=215.66  Aligned_cols=207  Identities=22%  Similarity=0.211  Sum_probs=176.0

Q ss_pred             ccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCC
Q 048006          529 MGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFL  608 (833)
Q Consensus       529 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L  608 (833)
                      ++.+++++++++++|.++. +|..+.  ++++.|++++|.+.+..|..+. .+++|++|++++|.+++..+.  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            5678899999999999994 555443  6899999999999854455555 799999999999999865432  789999


Q ss_pred             CEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCC
Q 048006          609 QVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGL  688 (833)
Q Consensus       609 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L  688 (833)
                      ++|++++|++. .+|..+..+++|                                +.|++++|++++..|..|..+++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L--------------------------------~~L~l~~N~l~~l~~~~~~~l~~L  126 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPAL--------------------------------TVLDVSFNRLTSLPLGALRGLGEL  126 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTC--------------------------------CEEECCSSCCCCCCSSTTTTCTTC
T ss_pred             CEEECCCCcCC-cCchhhccCCCC--------------------------------CEEECCCCcCcccCHHHHcCCCCC
Confidence            99999999997 667666666555                                999999999998878889999999


Q ss_pred             cEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCC
Q 048006          689 VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNP  768 (833)
Q Consensus       689 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~  768 (833)
                      ++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++...+.......+..+.+.|||
T Consensus       127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            99999999999888888999999999999999999777777899999999999999999544444555667788899999


Q ss_pred             CCCCCC
Q 048006          769 ELCGLP  774 (833)
Q Consensus       769 ~lc~~~  774 (833)
                      |.|+|.
T Consensus       207 ~~C~c~  212 (290)
T 1p9a_G          207 WLCNCE  212 (290)
T ss_dssp             BCCSGG
T ss_pred             ccCcCc
Confidence            999885

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=7.3e-23  Score=210.82  Aligned_cols=206  Identities=25%  Similarity=0.294  Sum_probs=177.6

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      ...+.++++++.++. +|..+.  +++++|++++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            457789999999884 565443  57999999999999877778999999999999999999777777889999999999


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD  644 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  644 (833)
                      ++|++. .+|...+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|            
T Consensus        93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------  159 (270)
T 2o6q_A           93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL------------  159 (270)
T ss_dssp             CSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc------------
Confidence            999998 6666555578999999999999998888888999999999999999987666667766666            


Q ss_pred             ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006          645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  724 (833)
                                          +.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++..
T Consensus       160 --------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          160 --------------------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             --------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             --------------------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence                                999999999998777789999999999999999998777789999999999999999875


Q ss_pred             cC
Q 048006          725 GI  726 (833)
Q Consensus       725 ~~  726 (833)
                      .-
T Consensus       220 ~c  221 (270)
T 2o6q_A          220 TC  221 (270)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=8.1e-24  Score=218.13  Aligned_cols=223  Identities=22%  Similarity=0.267  Sum_probs=163.9

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      ..+..+++..+.+.+..  ....+++|+.|++++|.++..  ..+..+++|++|++++|.+++.  ..+..+++|++|++
T Consensus        19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred             HHHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence            34445555555555432  345567777777777777632  3466777777888877777753  36777778888888


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD  644 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  644 (833)
                      ++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|            
T Consensus        93 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------  159 (272)
T 3rfs_A           93 TGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------  159 (272)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC------------
Confidence            888877 4444433367788888888888876666667788888888888888876666666666555            


Q ss_pred             ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006          645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  724 (833)
                                          +.|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+
T Consensus       160 --------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          160 --------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             --------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             --------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence                                788888888887777777888888888888888888777778888889999999888875


Q ss_pred             cCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006          725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       725 ~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  753 (833)
                      ..       +.|+.++++.|.++|.+|..
T Consensus       220 ~~-------~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          220 TC-------PGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred             cC-------cHHHHHHHHHHhCCCcccCc
Confidence            53       46788888889998888864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=3.7e-23  Score=213.15  Aligned_cols=224  Identities=21%  Similarity=0.220  Sum_probs=187.4

Q ss_pred             eeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccC
Q 048006          464 FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNN  543 (833)
Q Consensus       464 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  543 (833)
                      .+++..+.+.+.....   .+++|+.|++++|.++..  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|
T Consensus        23 ~l~l~~~~~~~~~~~~---~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           23 KANLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHTCSCTTSEECHH---HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred             HHHhcCcccccccccc---cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence            3444444444333222   147899999999998843  3588899999999999999863  47889999999999999


Q ss_pred             cCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCC
Q 048006          544 RLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP  623 (833)
Q Consensus       544 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  623 (833)
                      .+++..+..|..+++|++|++++|+++ .+|...+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            999888888999999999999999998 5555444479999999999999998777778999999999999999998777


Q ss_pred             ccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCC
Q 048006          624 KCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQIS  703 (833)
Q Consensus       624 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  703 (833)
                      ..|..+++|                                +.|++++|++++..+..+..+++|++|++++|.+.+.  
T Consensus       175 ~~~~~l~~L--------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--  220 (272)
T 3rfs_A          175 GVFDKLTQL--------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--  220 (272)
T ss_dssp             TTTTTCTTC--------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--
T ss_pred             HHhcCCccC--------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--
Confidence            777776666                                9999999999988888899999999999999998854  


Q ss_pred             cccCCCCCCCEEeCCCCcCcccCCccccCCC
Q 048006          704 PKIGQLKSLDFLDLSRNQLVGGIPSSLSQLS  734 (833)
Q Consensus       704 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  734 (833)
                           +++|+.|+++.|.++|.+|..++.++
T Consensus       221 -----~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          221 -----CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             -----TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             -----CcHHHHHHHHHHhCCCcccCcccccC
Confidence                 45799999999999999999887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=6.9e-24  Score=228.51  Aligned_cols=258  Identities=22%  Similarity=0.221  Sum_probs=190.5

Q ss_pred             eecCCCcccccccccccccCCcccEEEcCCCcCcCCCC----CcccCCC-CCcEEEccCCcccccCCCCccCc-----CC
Q 048006          465 LNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLP----DCWWTFD-SLVILNLENNSFSGRIPDSMGFL-----QN  534 (833)
Q Consensus       465 L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l-----~~  534 (833)
                      +.++.|.+++.++..... .++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            456677777766654433 3559999999999887666    6777888 89999999999987766666664     88


Q ss_pred             ccEEEcccCcCccccCcc----ccCC-CCCcEeccCCCccCCCCCcchhh---c-CCccceEEecCCccccc----cccc
Q 048006          535 IQTLSLHNNRLTGELSSS----FRNC-SQLRLLDLGKNALYGEIPTWMGE---S-LSNLIVLSLKSNKFHGK----IPFQ  601 (833)
Q Consensus       535 L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~p~~~~~---~-l~~L~~L~L~~N~l~~~----~~~~  601 (833)
                      |++|++++|.+++..+..    +..+ ++|++|++++|++.+..+..+..   . .++|++|+|++|.++..    ++..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999998766654    3444 88999999999998554444332   2 36899999999998853    3344


Q ss_pred             ccCCC-CCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhcccc-CcccEEEccCCcCCCC--
Q 048006          602 LCQLA-FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTL-GLVKSLELSNNNLNGA--  677 (833)
Q Consensus       602 l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~--  677 (833)
                      +..++ +|++|+|++|++++..+..+...                            .... ++|+.|||++|.+++.  
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~----------------------------l~~~~~~L~~L~Ls~N~i~~~~~  213 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKF----------------------------LASIPASVTSLDLSANLLGLKSY  213 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHH----------------------------HHTSCTTCCEEECTTSCGGGSCH
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHH----------------------------HHhCCCCCCEEECCCCCCChhHH
Confidence            45565 89999999999987665544322                            0112 3569999999999863  


Q ss_pred             --Cchhhhc-ccCCcEEECCCccccccCC----cccCCCCCCCEEeCCCCcCcccC-------CccccCCCCCCEEECcC
Q 048006          678 --VPEEIMD-LVGLVALNLSKNHLTGQIS----PKIGQLKSLDFLDLSRNQLVGGI-------PSSLSQLSGLSVMDLSY  743 (833)
Q Consensus       678 --~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~-------p~~l~~l~~L~~L~ls~  743 (833)
                        ++..+.. .++|++|+|++|.+++..+    ..+..+++|+.|+|++|.+.+..       +..+..+++|+.||+++
T Consensus       214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~  293 (362)
T 3goz_A          214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG  293 (362)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence              4555655 4589999999999986554    34567899999999999955433       34677888999999999


Q ss_pred             CcCccCCC
Q 048006          744 NNLSGKIP  751 (833)
Q Consensus       744 N~l~g~ip  751 (833)
                      |++....|
T Consensus       294 N~l~~~~~  301 (362)
T 3goz_A          294 KEIHPSHS  301 (362)
T ss_dssp             CBCCGGGC
T ss_pred             CcCCCcch
Confidence            99887633

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=4.7e-22  Score=202.34  Aligned_cols=211  Identities=22%  Similarity=0.216  Sum_probs=136.7

Q ss_pred             ccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEecc
Q 048006          535 IQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLS  614 (833)
Q Consensus       535 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls  614 (833)
                      .++++++++.++ .+|..+.  ++++.|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            344444444444 2332222  3455555555555533332232 45566666666666665555566667777777777


Q ss_pred             CCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECC
Q 048006          615 LNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLS  694 (833)
Q Consensus       615 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  694 (833)
                      +|++++..+..|..+++|                                +.|+|++|++++..+..|..+++|++|+|+
T Consensus        92 ~n~l~~~~~~~~~~l~~L--------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQL--------------------------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTC--------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcccccChhHhcccCCC--------------------------------CEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence            777776555556555555                                778888888886666667888999999999


Q ss_pred             CccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccC-cc-----ccccccCCC
Q 048006          695 KNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQ-SF-----NDTVYAGNP  768 (833)
Q Consensus       695 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~-~l-----~~~~~~gn~  768 (833)
                      +|++++..+..|+.+++|+.|+|++|++++..|..+..+++|++|++++|++++.......+. ++     ......|+ 
T Consensus       140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-  218 (251)
T 3m19_A          140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-  218 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-----
T ss_pred             CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-
Confidence            999997777789999999999999999998888889999999999999999998755432211 11     11122344 


Q ss_pred             CCCCCCCCCCCCCC
Q 048006          769 ELCGLPLPNKCRDE  782 (833)
Q Consensus       769 ~lc~~~~~~~c~~~  782 (833)
                      .+|+.+....|..+
T Consensus       219 ~~~~~~~~~~C~~~  232 (251)
T 3m19_A          219 NLHESPDGVTCSDG  232 (251)
T ss_dssp             ---CCGGGCBBTTS
T ss_pred             ccccCCCcCccCCC
Confidence            35655555677654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=5.4e-22  Score=200.43  Aligned_cols=196  Identities=21%  Similarity=0.211  Sum_probs=106.8

Q ss_pred             CCcEEEccCCcccccCCCCccCcCCccEEEcccCc-CccccCccccCCCCCcEeccCC-CccCCCCCcchhhcCCccceE
Q 048006          510 SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR-LTGELSSSFRNCSQLRLLDLGK-NALYGEIPTWMGESLSNLIVL  587 (833)
Q Consensus       510 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~~L~~L  587 (833)
                      ++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |+++ .+|...+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            55555555555555444455555555555555554 5544444555555555555555 5554 3333322245555555


Q ss_pred             EecCCcccccccccccCCCCCC---EEeccCC-cCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCc
Q 048006          588 SLKSNKFHGKIPFQLCQLAFLQ---VLDLSLN-NISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL  663 (833)
Q Consensus       588 ~L~~N~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (833)
                      ++++|++++ +|. +..+++|+   +|++++| .+.+..+..|.++++|                               
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-------------------------------  157 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-------------------------------  157 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence            555555553 333 44555555   6666666 5554444445444444                               


Q ss_pred             cc-EEEccCCcCCCCCchhhhcccCCcEEECCCcc-ccccCCcccCCC-CCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 048006          664 VK-SLELSNNNLNGAVPEEIMDLVGLVALNLSKNH-LTGQISPKIGQL-KSLDFLDLSRNQLVGGIPSSLSQLSGLSVMD  740 (833)
Q Consensus       664 L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  740 (833)
                       + .|++++|+++ .+|......++|++|++++|+ +++..+..|..+ ++|+.|++++|++++. |..  .+++|+.|+
T Consensus       158 -~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~  232 (239)
T 2xwt_C          158 -TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELI  232 (239)
T ss_dssp             -EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEE
T ss_pred             -eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceee
Confidence             5 5666666665 333332223566666666663 665555666666 6677777777776633 322  455666666


Q ss_pred             CcCC
Q 048006          741 LSYN  744 (833)
Q Consensus       741 ls~N  744 (833)
                      ++++
T Consensus       233 l~~~  236 (239)
T 2xwt_C          233 ARNT  236 (239)
T ss_dssp             CTTC
T ss_pred             ccCc
Confidence            6655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=3.6e-24  Score=233.25  Aligned_cols=236  Identities=17%  Similarity=0.206  Sum_probs=182.5

Q ss_pred             CCcccEEEcCCCcCcCCC----CCcccCCCCCcEEEccCC---cccccCCCCc-------cCcCCccEEEcccCcCcc--
Q 048006          484 GSKLTYVDLSSNLLSGKL----PDCWWTFDSLVILNLENN---SFSGRIPDSM-------GFLQNIQTLSLHNNRLTG--  547 (833)
Q Consensus       484 ~~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~-------~~l~~L~~L~L~~n~l~~--  547 (833)
                      +++|++|++++|.+++..    +..+..+++|++|+|++|   ++++.+|..+       ..+++|++|+|++|.+++  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            577888888888887653    334667888999999886   4444555444       678889999999999886  


Q ss_pred             --ccCccccCCCCCcEeccCCCccCCCCCcchhh---cC---------CccceEEecCCccc-cccc---ccccCCCCCC
Q 048006          548 --ELSSSFRNCSQLRLLDLGKNALYGEIPTWMGE---SL---------SNLIVLSLKSNKFH-GKIP---FQLCQLAFLQ  609 (833)
Q Consensus       548 --~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~---~l---------~~L~~L~L~~N~l~-~~~~---~~l~~l~~L~  609 (833)
                        .++..+..+++|++|++++|.+.+..+..+..   .+         ++|++|++++|+++ +.++   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              46777888899999999999886433333332   22         78999999999887 3444   4667788999


Q ss_pred             EEeccCCcCcc-----cCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCC----CCCch
Q 048006          610 VLDLSLNNISG-----KIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN----GAVPE  680 (833)
Q Consensus       610 ~L~Ls~N~l~~-----~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~----~~~p~  680 (833)
                      .|++++|++..     ..|..+..+                                ++|+.|+|++|.++    +.+|.
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~--------------------------------~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYC--------------------------------QELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGC--------------------------------TTCCEEECCSSCCHHHHHHHHHH
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcC--------------------------------CCccEEECcCCCCCcHHHHHHHH
Confidence            99999998862     223244444                                44599999999996    57888


Q ss_pred             hhhcccCCcEEECCCcccccc----CCccc--CCCCCCCEEeCCCCcCcc----cCCccc-cCCCCCCEEECcCCcCccC
Q 048006          681 EIMDLVGLVALNLSKNHLTGQ----ISPKI--GQLKSLDFLDLSRNQLVG----GIPSSL-SQLSGLSVMDLSYNNLSGK  749 (833)
Q Consensus       681 ~l~~l~~L~~L~Ls~N~l~~~----~p~~l--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~  749 (833)
                      .+..+++|++|+|++|.+++.    +|..+  +.+++|+.|+|++|++++    .+|..+ .++++|++|++++|++++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            899999999999999999876    56666  348999999999999998    478777 6689999999999999987


Q ss_pred             CC
Q 048006          750 IP  751 (833)
Q Consensus       750 ip  751 (833)
                      .|
T Consensus       319 ~~  320 (386)
T 2ca6_A          319 DD  320 (386)
T ss_dssp             SH
T ss_pred             hh
Confidence            75

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=6.7e-23  Score=215.78  Aligned_cols=200  Identities=23%  Similarity=0.193  Sum_probs=107.5

Q ss_pred             CCcEEEccCCcccccCCCCc--cCcCCccEEEcccCcCccccC----ccccCCCCCcEeccCCCccCCCCCcchhhcCCc
Q 048006          510 SLVILNLENNSFSGRIPDSM--GFLQNIQTLSLHNNRLTGELS----SSFRNCSQLRLLDLGKNALYGEIPTWMGESLSN  583 (833)
Q Consensus       510 ~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  583 (833)
                      +|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..|..+. .+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CCTT
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cCCC
Confidence            34444444444444444443  444444444444444443222    1223444555555555555422222222 3455


Q ss_pred             cceEEecCCccccc--c--cccccCCCCCCEEeccCCcCcccCCc----cccccccccccCCCCcccccceEEeeccCcc
Q 048006          584 LIVLSLKSNKFHGK--I--PFQLCQLAFLQVLDLSLNNISGKIPK----CFNNFTAMTQERSSDPTIKDKLMLTWKGSER  655 (833)
Q Consensus       584 L~~L~L~~N~l~~~--~--~~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  655 (833)
                      |++|+|++|++.+.  +  +..+..+++|++|++++|+++. ++.    .+..++                         
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~-------------------------  224 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGV-------------------------  224 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTC-------------------------
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCC-------------------------
Confidence            55555555554321  1  1122455666666666666642 111    122222                         


Q ss_pred             hhccccCcccEEEccCCcCCCCCchhhhcc---cCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccC
Q 048006          656 EYRSTLGLVKSLELSNNNLNGAVPEEIMDL---VGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQ  732 (833)
Q Consensus       656 ~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  732 (833)
                             +|++|||++|++++..|..+..+   ++|++|+|++|+++ .+|..+.  ++|+.|+|++|++++. |. +..
T Consensus       225 -------~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~  292 (310)
T 4glp_A          225 -------QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDE  292 (310)
T ss_dssp             -------CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTS
T ss_pred             -------CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhh
Confidence                   33666666666666656555555   57777777777777 5666654  6788888888888754 33 567


Q ss_pred             CCCCCEEECcCCcCcc
Q 048006          733 LSGLSVMDLSYNNLSG  748 (833)
Q Consensus       733 l~~L~~L~ls~N~l~g  748 (833)
                      +++|+.|++++|+++.
T Consensus       293 l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          293 LPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCSCEECSSTTTSC
T ss_pred             CCCccEEECcCCCCCC
Confidence            7788888888887763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.6e-21  Score=205.15  Aligned_cols=224  Identities=23%  Similarity=0.248  Sum_probs=180.6

Q ss_pred             CCCcEEEccCCcccccCCC---CccCcCCccEEEcccCcCccccCccc--cCCCCCcEeccCCCccCCCCCc----chhh
Q 048006          509 DSLVILNLENNSFSGRIPD---SMGFLQNIQTLSLHNNRLTGELSSSF--RNCSQLRLLDLGKNALYGEIPT----WMGE  579 (833)
Q Consensus       509 ~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~----~~~~  579 (833)
                      ..++.+.+.++.++...-.   .+..+++|++|++++|.+++..|..+  ..+++|++|++++|++.+..+.    .+. 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            4578888888877532110   12235679999999999999999888  8999999999999999976552    223 


Q ss_pred             cCCccceEEecCCcccccccccccCCCCCCEEeccCCcCccc--C--CccccccccccccCCCCcccccceEEeeccCcc
Q 048006          580 SLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK--I--PKCFNNFTAMTQERSSDPTIKDKLMLTWKGSER  655 (833)
Q Consensus       580 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  655 (833)
                      .+++|++|++++|++.+..+..+..+++|++|++++|++.+.  +  +..+..++                         
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-------------------------  197 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-------------------------  197 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-------------------------
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC-------------------------
Confidence            589999999999999988889999999999999999998652  1  12223444                         


Q ss_pred             hhccccCcccEEEccCCcCCCCCch----hhhcccCCcEEECCCccccccCCcccCCC---CCCCEEeCCCCcCcccCCc
Q 048006          656 EYRSTLGLVKSLELSNNNLNGAVPE----EIMDLVGLVALNLSKNHLTGQISPKIGQL---KSLDFLDLSRNQLVGGIPS  728 (833)
Q Consensus       656 ~~~~~~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~  728 (833)
                             +|++|+|++|+++ .++.    .++.+++|++|+|++|++++.+|..+..+   ++|++|+|++|+++ .+|.
T Consensus       198 -------~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~  268 (310)
T 4glp_A          198 -------AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK  268 (310)
T ss_dssp             -------CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred             -------CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence                   4489999999997 3444    35788999999999999999889888877   69999999999999 6787


Q ss_pred             cccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCC
Q 048006          729 SLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPEL  770 (833)
Q Consensus       729 ~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~l  770 (833)
                      .+.  ++|++||+++|++++. |....+..+..+.+.||+..
T Consensus       269 ~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          269 GLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred             hhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence            775  7999999999999974 43456778888889999763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.6e-21  Score=196.88  Aligned_cols=198  Identities=16%  Similarity=0.158  Sum_probs=169.4

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCc-ccccCCCCccCcCCccEEEccc-CcCccccCccccCCCCCcEe
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNS-FSGRIPDSMGFLQNIQTLSLHN-NRLTGELSSSFRNCSQLRLL  562 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  562 (833)
                      +++++|++++|++++..+..|..+++|++|++++|. +++..+..|..+++|++|++++ |++++..+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            578999999999998877789999999999999997 8877777899999999999998 99998888899999999999


Q ss_pred             ccCCCccCCCCCcchhhcCCccc---eEEecCC-cccccccccccCCCCCC-EEeccCCcCcccCCccccccccccccCC
Q 048006          563 DLGKNALYGEIPTWMGESLSNLI---VLSLKSN-KFHGKIPFQLCQLAFLQ-VLDLSLNNISGKIPKCFNNFTAMTQERS  637 (833)
Q Consensus       563 ~L~~n~l~~~~p~~~~~~l~~L~---~L~L~~N-~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  637 (833)
                      ++++|+++ .+|. +. .+++|+   +|++++| .+++..+..|.++++|+ .|++++|+++...+..|.. ++      
T Consensus       111 ~l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~------  180 (239)
T 2xwt_C          111 GIFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TK------  180 (239)
T ss_dssp             EEEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CE------
T ss_pred             eCCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CC------
Confidence            99999998 5887 33 688888   9999999 99977777899999999 9999999998333333332 33      


Q ss_pred             CCcccccceEEeeccCcchhccccCcccEEEccCCc-CCCCCchhhhcc-cCCcEEECCCccccccCCcccCCCCCCCEE
Q 048006          638 SDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNN-LNGAVPEEIMDL-VGLVALNLSKNHLTGQISPKIGQLKSLDFL  715 (833)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  715 (833)
                                                |+.|++++|+ +++..+..|..+ ++|++|++++|++++ +|..  .+++|+.|
T Consensus       181 --------------------------L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L  231 (239)
T 2xwt_C          181 --------------------------LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL  231 (239)
T ss_dssp             --------------------------EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred             --------------------------CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence                                      4999999995 987777889999 999999999999995 4443  67899999


Q ss_pred             eCCCCc
Q 048006          716 DLSRNQ  721 (833)
Q Consensus       716 ~Ls~N~  721 (833)
                      +++++.
T Consensus       232 ~l~~~~  237 (239)
T 2xwt_C          232 IARNTW  237 (239)
T ss_dssp             ECTTC-
T ss_pred             eccCcc
Confidence            998874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=7e-23  Score=218.85  Aligned_cols=252  Identities=17%  Similarity=0.207  Sum_probs=183.5

Q ss_pred             CceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCccccc-CCCCccCcCCccEEEc
Q 048006          462 SSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR-IPDSMGFLQNIQTLSL  540 (833)
Q Consensus       462 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L  540 (833)
                      ++.++++++.+........  ..+.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++
T Consensus        49 ~~~l~l~~~~~~~~~~~~~--~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           49 WQTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             SSEEECTTCBCCHHHHHHH--HHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             heeeccccccCCHHHHHhh--hhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            5566666665552111100  026788899999988877665 45688999999999988765 6777888899999999


Q ss_pred             ccCcCccccCccccCCCCCcEeccCCC-ccCCC-CCcchhhcCCccceEEecCC-ccccc-ccccccCCC-CCCEEeccC
Q 048006          541 HNNRLTGELSSSFRNCSQLRLLDLGKN-ALYGE-IPTWMGESLSNLIVLSLKSN-KFHGK-IPFQLCQLA-FLQVLDLSL  615 (833)
Q Consensus       541 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~-~L~~L~Ls~  615 (833)
                      ++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            999888888888888999999999998 56542 444444 6888999999999 88754 566777888 899999998


Q ss_pred             Cc--Cc-ccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCc-CCCCCchhhhcccCCcEE
Q 048006          616 NN--IS-GKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNN-LNGAVPEEIMDLVGLVAL  691 (833)
Q Consensus       616 N~--l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L  691 (833)
                      |.  ++ +.+|..+..+                                ++|+.|++++|. +++..+..+..+++|++|
T Consensus       205 ~~~~~~~~~l~~~~~~~--------------------------------~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L  252 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRC--------------------------------PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  252 (336)
T ss_dssp             CGGGSCHHHHHHHHHHC--------------------------------TTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             CcccCCHHHHHHHHhhC--------------------------------CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence            84  44 2334444444                                444889999998 777778888889999999


Q ss_pred             ECCCcc-ccccCCcccCCCCCCCEEeCCCCcCcccCCccccCC-CCCCEEECcCCcCccCCCCc
Q 048006          692 NLSKNH-LTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQL-SGLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       692 ~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~~  753 (833)
                      ++++|. ++......++++++|+.|++++| ++.   ..+..+ ..++.|++++|++++..|..
T Consensus       253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence            999995 33222235778899999999988 432   233333 24677778999999887754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=9.5e-23  Score=219.60  Aligned_cols=28  Identities=18%  Similarity=0.059  Sum_probs=18.0

Q ss_pred             hhcccccccEEeecCCccccccchhHHh
Q 048006          384 WLQTQNQIELLDISNTGISDTIPDWFWN  411 (833)
Q Consensus       384 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~  411 (833)
                      .+..+++|+.||+++|.+.+..+..+..
T Consensus       279 ~~~~l~~L~~LdL~~N~l~~~~~~~~~~  306 (362)
T 3goz_A          279 AFPNIQKIILVDKNGKEIHPSHSIPISN  306 (362)
T ss_dssp             TSTTCCEEEEECTTSCBCCGGGCHHHHH
T ss_pred             HhccCCceEEEecCCCcCCCcchHHHHH
Confidence            3456667777777777777665555444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=5.4e-23  Score=219.74  Aligned_cols=237  Identities=21%  Similarity=0.233  Sum_probs=152.4

Q ss_pred             CCCCcccceEecCCCCcEEEEECCCCCCCCCCcceecCccccCC--CCCCEEeCCCCCCCCCCccccccCCCCCCEEEcc
Q 048006           43 RDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKL--HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLF  120 (833)
Q Consensus        43 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls  120 (833)
                      .-|.+|.++.|+.  ..++.+++++     +.+.   +..+..+  +++++|++++|.+.+. .+. +..+++|++|+|+
T Consensus        34 ~vc~~W~~~~~~~--~~~~~l~l~~-----~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~  101 (336)
T 2ast_B           34 GVCKRWYRLASDE--SLWQTLDLTG-----KNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLS  101 (336)
T ss_dssp             SSCHHHHHHHTCS--TTSSEEECTT-----CBCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEECT
T ss_pred             HHHHHHHHHhcCc--hhheeecccc-----ccCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEEcc
Confidence            4566899998863  3567888887     4444   3456666  8899999999998864 444 5678999999999


Q ss_pred             CCCCCCC-CCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCC-CCCCCchhHHhhcCCCCCCEEEccCC-
Q 048006          121 GTVFAGP-IPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDES-NLANSSDWFQVIGKLHSLKTLSLHSC-  197 (833)
Q Consensus       121 ~n~l~~~-~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n-~~~~~~~~~~~l~~l~~L~~L~Ls~n-  197 (833)
                      +|.+.+. +|..+..+++|++|++++|.+.. ..+..++++++|++|++++| .+++. .++..+..+++|++|++++| 
T Consensus       102 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~L~~L~l~~~~  179 (336)
T 2ast_B          102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLDELNLSWCF  179 (336)
T ss_dssp             TCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCCEEECCCCT
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCCCCEEcCCCCC
Confidence            9988765 77788889999999999887643 33446777888888888888 45432 35566777788888888877 


Q ss_pred             CCCCC-CCccccccccCC-CCCEEEccCC--cCC-CCCCCcccccccCCcEEEccCcc-ccccccccccCCCCCcEEECc
Q 048006          198 YLPPV-IPLSLNHLNSST-SLETLVLSDN--NLT-SSIYPWLPNISSIFISIDLGFNQ-LQGSIPESFQHMVYLEHLRLS  271 (833)
Q Consensus       198 ~l~~~-~~~~~~~~~~~~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~  271 (833)
                      .+++. ++.   ....++ +|++|++++|  .++ +.++..+..+++ |++|++++|. +++..+..+..+++|++|+++
T Consensus       180 ~l~~~~~~~---~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~  255 (336)
T 2ast_B          180 DFTEKHVQV---AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN-LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS  255 (336)
T ss_dssp             TCCHHHHHH---HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT-CSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             CcChHHHHH---HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC-CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence            66543 222   122235 6777777776  343 233334444455 5555555555 444445555555555555555


Q ss_pred             CCc-ccccccccccCCCCCcEEEccCC
Q 048006          272 FNE-LEGGIPKFFGNMCSLITLNLSNN  297 (833)
Q Consensus       272 ~n~-l~~~~p~~l~~l~~L~~L~Ls~n  297 (833)
                      +|. +.......+.++++|++|++++|
T Consensus       256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          256 RCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            553 22111123455555555555555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.9e-21  Score=202.65  Aligned_cols=192  Identities=24%  Similarity=0.383  Sum_probs=104.1

Q ss_pred             CCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceE
Q 048006          508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVL  587 (833)
Q Consensus       508 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L  587 (833)
                      +++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|++. .++ .+. .+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCEE
Confidence            4444555555554442 22 34445555555555555543322  555555555555555554 233 222 35555555


Q ss_pred             EecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEE
Q 048006          588 SLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL  667 (833)
Q Consensus       588 ~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  667 (833)
                      ++++|++++. + .+..+++|+.|++++|++++..+  +..+++                                |+.|
T Consensus       113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~--------------------------------L~~L  156 (308)
T 1h6u_A          113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTN--------------------------------LQYL  156 (308)
T ss_dssp             ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT--------------------------------CCEE
T ss_pred             ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCC--------------------------------ccEE
Confidence            5555555532 2 25556666666666666653322  333333                                3666


Q ss_pred             EccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCc
Q 048006          668 ELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS  747 (833)
Q Consensus       668 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  747 (833)
                      ++++|++++. +. +..+++|++|++++|++++..+  +..+++|+.|++++|++++..|  +..+++|+.|++++|+++
T Consensus       157 ~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          157 SIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             ECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             EccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            6666666642 22 6666666666666666664332  6666667777777777664432  666667777777777765


Q ss_pred             c
Q 048006          748 G  748 (833)
Q Consensus       748 g  748 (833)
                      +
T Consensus       231 ~  231 (308)
T 1h6u_A          231 N  231 (308)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.4e-20  Score=191.40  Aligned_cols=181  Identities=23%  Similarity=0.220  Sum_probs=112.1

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      ...++++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            34566666666666 3343332  35666666666666555555555555555555555555555555555555555555


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD  644 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  644 (833)
                      ++|+++                         +..+..+..+++|++|+|++|++++..+..|..+++|            
T Consensus        91 ~~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------  133 (251)
T 3m19_A           91 ANNQLA-------------------------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL------------  133 (251)
T ss_dssp             TTSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCccc-------------------------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc------------
Confidence            555554                         3334444555666666666666654444444444444            


Q ss_pred             ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006          645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  724 (833)
                                          +.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.+
T Consensus       134 --------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          134 --------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             --------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             --------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence                                667777777765555567777888888888888887777778888888888888888876


Q ss_pred             c
Q 048006          725 G  725 (833)
Q Consensus       725 ~  725 (833)
                      .
T Consensus       194 ~  194 (251)
T 3m19_A          194 S  194 (251)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.3e-20  Score=197.64  Aligned_cols=194  Identities=21%  Similarity=0.327  Sum_probs=127.6

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCC
Q 048006           83 LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY  162 (833)
Q Consensus        83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  162 (833)
                      +..+++|++|++++|.++.  +| .+..+++|++|+|++|.+.+ ++. +..+++|++|++++|.+..   .+.+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~---~~~~~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN---VSAIAGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC---CGGGTTCTT
T ss_pred             HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC---chhhcCCCC
Confidence            4467788888888888874  44 57788888888888888875 444 8888888888888888753   346777888


Q ss_pred             CcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCc
Q 048006          163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI  242 (833)
Q Consensus       163 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~  242 (833)
                      |++|++++|.+++++    .+..+++|++|++++|.+.+..+     +..+++|+.|++++|.+++..+  +..+++ |+
T Consensus       109 L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-L~  176 (308)
T 1h6u_A          109 IKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLTP--LANLSK-LT  176 (308)
T ss_dssp             CCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCGG--GTTCTT-CC
T ss_pred             CCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCCChh--hcCCCC-CC
Confidence            888888888877742    36777777888777777766532     2223667777777766664322  445555 55


Q ss_pred             EEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCC
Q 048006          243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLS  300 (833)
Q Consensus       243 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  300 (833)
                      .|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|++|++++|.++
T Consensus       177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             EEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            55555555554322  5555555555555555554332  555555555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.7e-22  Score=220.07  Aligned_cols=205  Identities=19%  Similarity=0.224  Sum_probs=96.1

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCCC---ccccccCCCCCCEEEccCCC---CCCCCCccc-------CCccccceecccC
Q 048006           79 ISPALLKLHDLRHLNLSFNDFSGSP---IPEFIGSLSKLRYLDLFGTV---FAGPIPPQL-------GNLSRLQHLDLGS  145 (833)
Q Consensus        79 ~~~~l~~l~~L~~L~Ls~n~~~~~~---~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~~-------~~l~~L~~L~Ls~  145 (833)
                      ++..+..+++|++|+|++|.++...   ++..+..+++|++|+|++|.   +.+.+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            3455666677777777777666420   22335567777777777753   333444443       4555556666655


Q ss_pred             ccCCCCC---CcccccCCCCCcEEecCCCCCCCC--chhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEE
Q 048006          146 NYLFSTG---NLDWLSHLSYLRYLNLDESNLANS--SDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLV  220 (833)
Q Consensus       146 n~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~  220 (833)
                      |.+...+   .+..+.++++|++|++++|.++..  ..++..+..+.        .+          ......++|++|+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~--------~~----------~~~~~~~~L~~L~  165 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA--------VN----------KKAKNAPPLRSII  165 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH--------HH----------HHHHTCCCCCEEE
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh--------hh----------hhcccCCCCcEEE
Confidence            5553211   112334444444444444444321  01122222220        00          0000003444444


Q ss_pred             ccCCcCCC-CCC---CcccccccCCcEEEccCccccc-----cccccccCCCCCcEEECcCCccc----ccccccccCCC
Q 048006          221 LSDNNLTS-SIY---PWLPNISSIFISIDLGFNQLQG-----SIPESFQHMVYLEHLRLSFNELE----GGIPKFFGNMC  287 (833)
Q Consensus       221 Ls~n~l~~-~~~---~~l~~l~~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~  287 (833)
                      +++|+++. .++   ..+..+++ |++|++++|.++.     ..|..+..+++|++|+|++|.++    +.+|..+..++
T Consensus       166 L~~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~  244 (386)
T 2ca6_A          166 CGRNRLENGSMKEWAKTFQSHRL-LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  244 (386)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTT-CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             CCCCCCCcHHHHHHHHHHHhCCC-cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence            44444431 111   12233333 5555555555441     22334555666666666666654    34455555666


Q ss_pred             CCcEEEccCCCCCch
Q 048006          288 SLITLNLSNNKLSGQ  302 (833)
Q Consensus       288 ~L~~L~Ls~n~l~~~  302 (833)
                      +|++|+|++|.+++.
T Consensus       245 ~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          245 NLRELGLNDCLLSAR  259 (386)
T ss_dssp             TCCEEECTTCCCCHH
T ss_pred             CcCEEECCCCCCchh
Confidence            666666666666544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=2.4e-20  Score=209.63  Aligned_cols=210  Identities=26%  Similarity=0.358  Sum_probs=143.2

Q ss_pred             CCCCCCCCCCCCCCC-----cccce-EecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcc
Q 048006           32 VLSSWGPEDEKRDCC-----KWTGL-RCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIP  105 (833)
Q Consensus        32 ~~~~w~~~~~~~~~c-----~w~gv-~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p  105 (833)
                      .+.+|.   .+.++|     .|.|+ .|.  .++++.|+|++     +.+++ +|..+.  ++|++|+|++|.++.  +|
T Consensus        32 ~l~~W~---~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~-----n~L~~-lp~~l~--~~L~~L~Ls~N~l~~--ip   96 (571)
T 3cvr_A           32 AWDKWE---KQALPGENRNEAVSLLKECL--INQFSELQLNR-----LNLSS-LPDNLP--PQITVLEITQNALIS--LP   96 (571)
T ss_dssp             HHHHHH---TTCCTTCCHHHHHHHHHHHH--HTTCSEEECCS-----SCCSC-CCSCCC--TTCSEEECCSSCCSC--CC
T ss_pred             HHHHHh---ccCCccccccchhhhccccc--cCCccEEEeCC-----CCCCc-cCHhHc--CCCCEEECcCCCCcc--cc
Confidence            456675   345667     79999 675  35788899988     56666 666553  789999999998883  66


Q ss_pred             ccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcC
Q 048006          106 EFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGK  185 (833)
Q Consensus       106 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~  185 (833)
                         ..+++|++|+|++|.+++ +|. +.+  +|++|++++|.+..+  +.   .+++|++|++++|.+++++.      .
T Consensus        97 ---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~l--p~---~l~~L~~L~Ls~N~l~~lp~------~  158 (571)
T 3cvr_A           97 ---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTML--PE---LPALLEYINADNNQLTMLPE------L  158 (571)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCC--CC---CCTTCCEEECCSSCCSCCCC------C
T ss_pred             ---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCC--CC---cCccccEEeCCCCccCcCCC------c
Confidence               457888999999998886 776 655  788888888877541  11   45566666666666554321      2


Q ss_pred             CCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCC
Q 048006          186 LHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYL  265 (833)
Q Consensus       186 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  265 (833)
                      +                           ++|++|+|++|++++ +|. +.  ++ |+.|+|++|.++ .+|. |..  +|
T Consensus       159 l---------------------------~~L~~L~Ls~N~L~~-lp~-l~--~~-L~~L~Ls~N~L~-~lp~-~~~--~L  202 (571)
T 3cvr_A          159 P---------------------------TSLEVLSVRNNQLTF-LPE-LP--ES-LEALDVSTNLLE-SLPA-VPV--RN  202 (571)
T ss_dssp             C---------------------------TTCCEEECCSSCCSC-CCC-CC--TT-CCEEECCSSCCS-SCCC-CC-----
T ss_pred             C---------------------------CCcCEEECCCCCCCC-cch-hh--CC-CCEEECcCCCCC-chhh-HHH--hh
Confidence            3                           445555555555544 333 33  33 566666666665 3344 433  55


Q ss_pred             -------cEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcC
Q 048006          266 -------EHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLS  311 (833)
Q Consensus       266 -------~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  311 (833)
                             ++|+|++|+|+ .+|..+..+++|++|+|++|.+++.+|..+..+.
T Consensus       203 ~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          203 HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             -----CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence                   99999999998 4777788899999999999999999998888765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=4.3e-20  Score=197.69  Aligned_cols=242  Identities=19%  Similarity=0.186  Sum_probs=180.0

Q ss_pred             ceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCC-CCccCcCCccE-EEc
Q 048006          463 SFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIP-DSMGFLQNIQT-LSL  540 (833)
Q Consensus       463 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~-L~L  540 (833)
                      +.++.++++++.....+    .+++++|++++|+|+...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45677777777543222    2679999999999997666789999999999999999876555 56888888765 667


Q ss_pred             ccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecC-CcccccccccccCCC-CCCEEeccCCcC
Q 048006          541 HNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS-NKFHGKIPFQLCQLA-FLQVLDLSLNNI  618 (833)
Q Consensus       541 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~l~-~L~~L~Ls~N~l  618 (833)
                      ++|+++...|..|..+++|++|++++|++. .+|...+....++..|++.+ +.+....+..+..+. .++.|++++|+|
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            789999888899999999999999999998 56554443566788888866 567655556666664 588999999999


Q ss_pred             cccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccC-CcCCCCCchhhhcccCCcEEECCCcc
Q 048006          619 SGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN-NNLNGAVPEEIMDLVGLVALNLSKNH  697 (833)
Q Consensus       619 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~  697 (833)
                      +...+..| ...++                                +.|++++ |.++...+..|..+++|++|||++|+
T Consensus       167 ~~i~~~~f-~~~~L--------------------------------~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          167 QEIHNSAF-NGTQL--------------------------------DELNLSDNNNLEELPNDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             CEECTTSS-TTEEE--------------------------------EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred             cCCChhhc-cccch--------------------------------hHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence            85444444 23333                                8899975 66664444568999999999999999


Q ss_pred             ccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcC
Q 048006          698 LTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL  746 (833)
Q Consensus       698 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  746 (833)
                      |+...+..|   .+|+.|.+.++.-...+| .+.++++|+.++++++.-
T Consensus       214 l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          214 IHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH  258 (350)
T ss_dssp             CCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred             cCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence            995544444   556666665555445677 488899999999987643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.6e-19  Score=193.34  Aligned_cols=241  Identities=18%  Similarity=0.125  Sum_probs=169.3

Q ss_pred             CceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCC-CcccCCCCCcE-EEccCC
Q 048006          442 PGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLP-DCWWTFDSLVI-LNLENN  519 (833)
Q Consensus       442 ~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~-L~Ls~N  519 (833)
                      ++++.++++++......+.+++.|++++|+++.. +...+.++++|++|++++|++.+.+| ..|.+++++.+ +.+++|
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            5677888888766555677888888888888743 33333346888888888888866554 46778877665 566678


Q ss_pred             cccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCC-ccCCCCCcchhhcC-CccceEEecCCccccc
Q 048006          520 SFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN-ALYGEIPTWMGESL-SNLIVLSLKSNKFHGK  597 (833)
Q Consensus       520 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~~l-~~L~~L~L~~N~l~~~  597 (833)
                      +++...|..|..+++|++|++++|+++...+..+....++..|++.++ ++. .+|...+..+ ..++.|++++|+++. 
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~-  168 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQE-  168 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccccC-
Confidence            888777888888888888888888888777777777777888888664 454 6665443334 467888888888884 


Q ss_pred             ccccccCCCCCCEEeccC-CcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCC
Q 048006          598 IPFQLCQLAFLQVLDLSL-NNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG  676 (833)
Q Consensus       598 ~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  676 (833)
                      +|.......+|+.+++++ |.+....+..|..+++|                                +.||+++|+|+.
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L--------------------------------~~LdLs~N~l~~  216 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP--------------------------------VILDISRTRIHS  216 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC--------------------------------SEEECTTSCCCC
T ss_pred             CChhhccccchhHHhhccCCcccCCCHHHhccCccc--------------------------------chhhcCCCCcCc
Confidence            444444567788888875 55553334566766666                                888888888884


Q ss_pred             CCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCc
Q 048006          677 AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQ  721 (833)
Q Consensus       677 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  721 (833)
                       +|.  ..+.+|+.|.+.++.--..+| .+..+++|+.++++++.
T Consensus       217 -lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          217 -LPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             -CCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             -cCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence             443  224556666655554334566 47788888888887754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=2.6e-20  Score=184.77  Aligned_cols=159  Identities=22%  Similarity=0.237  Sum_probs=137.3

Q ss_pred             cEeccCCCccCCCCCcchhhcCCccceEEecCCccccccc-ccccCCCCCCEEeccCCcCcccCCccccccccccccCCC
Q 048006          560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP-FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS  638 (833)
Q Consensus       560 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  638 (833)
                      +.+++++|.++ .+|..+.   ..+++|++++|.+++..+ ..+..+++|+.|+|++|++++..+..|..+++|      
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            47778888876 6776543   456788888888887644 457888999999999999987777777777666      


Q ss_pred             CcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCC
Q 048006          639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLS  718 (833)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  718 (833)
                                                ++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus        84 --------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  137 (220)
T 2v70_A           84 --------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY  137 (220)
T ss_dssp             --------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred             --------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence                                      899999999998888889999999999999999999999999999999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCccCCCCcc
Q 048006          719 RNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVT  754 (833)
Q Consensus       719 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~  754 (833)
                      +|++++..|..|..+++|++|++++|++.|.++...
T Consensus       138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~  173 (220)
T 2v70_A          138 DNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAW  173 (220)
T ss_dssp             TSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHH
T ss_pred             CCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHH
Confidence            999999999999999999999999999999887543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=8.8e-20  Score=179.80  Aligned_cols=128  Identities=24%  Similarity=0.262  Sum_probs=63.4

Q ss_pred             cEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCC
Q 048006          488 TYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN  567 (833)
Q Consensus       488 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  567 (833)
                      +.++.+++.++. +|..+  .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            345555555552 23222  235666666666665544444555555666666665555444444555555555555555


Q ss_pred             ccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc
Q 048006          568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS  619 (833)
Q Consensus       568 ~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  619 (833)
                      +++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            554 333332223444444444444444333333444444444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=4.5e-20  Score=183.10  Aligned_cols=189  Identities=23%  Similarity=0.260  Sum_probs=150.2

Q ss_pred             cEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCC
Q 048006          560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSD  639 (833)
Q Consensus       560 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  639 (833)
                      +.++++++.++ .+|..+.   +++++|++++|.+++..+..|..+++|+.|+|++|++++..|..|.++++|       
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            56778888877 7777543   578899999999987777788899999999999999988888888877766       


Q ss_pred             cccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCC
Q 048006          640 PTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSR  719 (833)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  719 (833)
                                               +.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++
T Consensus        83 -------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  137 (220)
T 2v9t_B           83 -------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD  137 (220)
T ss_dssp             -------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             -------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence                                     8999999999966666688999999999999999999899999999999999999


Q ss_pred             CcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 048006          720 NQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITE  792 (833)
Q Consensus       720 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c~~~~~~~~~~~~~  792 (833)
                      |++++..+..|..+++|++|++++|++.+.+...+...++     ..++..   .....|..|...++....+
T Consensus       138 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l-----~~~~~~---~~~~~C~~P~~l~g~~l~~  202 (220)
T 2v9t_B          138 NKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYL-----HTNPIE---TSGARCTSPRRLANKRIGQ  202 (220)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHH-----HHCCCB---CSCCBEEESGGGTTCBGGG
T ss_pred             CcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHH-----HhCCCC---ccCCCcCCchHHcCCchhh
Confidence            9999888888999999999999999999876533221111     112211   1124577777776655543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=8.8e-20  Score=179.81  Aligned_cols=174  Identities=23%  Similarity=0.258  Sum_probs=97.3

Q ss_pred             cEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecC
Q 048006          512 VILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS  591 (833)
Q Consensus       512 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~  591 (833)
                      +.++.+++.++. +|..+  .++|++|++++|++++..+..|..+++|++|++++|+++                     
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------------   65 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---------------------   65 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------------------
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---------------------
Confidence            345555555552 23222  235555555555555444444455555555555555554                     


Q ss_pred             CcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccC
Q 048006          592 NKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN  671 (833)
Q Consensus       592 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  671 (833)
                          +..+..+..+++|++|++++|++++..+..|..+++|                                +.|++++
T Consensus        66 ----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------~~L~L~~  109 (208)
T 2o6s_A           66 ----SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL--------------------------------KELALNT  109 (208)
T ss_dssp             ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------CEEECCS
T ss_pred             ----ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC--------------------------------CEEEcCC
Confidence                3333334455555555555555554433344444433                                5566666


Q ss_pred             CcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCC
Q 048006          672 NNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIP  751 (833)
Q Consensus       672 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  751 (833)
                      |++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+.       ++.|++|+++.|+++|.+|
T Consensus       110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBB
T ss_pred             CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceee
Confidence            666554455566666677777777777655555566677777777777766543       3456777777777777777


Q ss_pred             C
Q 048006          752 T  752 (833)
Q Consensus       752 ~  752 (833)
                      .
T Consensus       183 ~  183 (208)
T 2o6s_A          183 N  183 (208)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.5e-19  Score=203.11  Aligned_cols=188  Identities=24%  Similarity=0.353  Sum_probs=129.4

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      .+++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|++++ +|. +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            478888888888886 55544  367888888888888 455   346788888888888886 555 544  7888888


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD  644 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  644 (833)
                      ++|++++ +|.    .+++|++|++++|.+++ +|.   .+++|+.|+|++|++++ +|. |.  ++             
T Consensus       128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~-------------  181 (571)
T 3cvr_A          128 DNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES-------------  181 (571)
T ss_dssp             CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT-------------
T ss_pred             CCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC-------------
Confidence            8888874 666    36778888888888775 554   46777777777777765 444 33  33             


Q ss_pred             ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCC-------cEEECCCccccccCCcccCCCCCCCEEeC
Q 048006          645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGL-------VALNLSKNHLTGQISPKIGQLKSLDFLDL  717 (833)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  717 (833)
                                         |+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|
T Consensus       182 -------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L  237 (571)
T 3cvr_A          182 -------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL  237 (571)
T ss_dssp             -------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEEC
T ss_pred             -------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEe
Confidence                               377777777777 5555 443  55       77777777776 46666666777777777


Q ss_pred             CCCcCcccCCccccCC
Q 048006          718 SRNQLVGGIPSSLSQL  733 (833)
Q Consensus       718 s~N~l~~~~p~~l~~l  733 (833)
                      ++|++++.+|..+..+
T Consensus       238 ~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          238 EDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CSSSCCHHHHHHHHHH
T ss_pred             eCCcCCCcCHHHHHHh
Confidence            7777777666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=2.5e-19  Score=192.60  Aligned_cols=180  Identities=27%  Similarity=0.261  Sum_probs=115.6

Q ss_pred             cEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhh-cCCccceEEecCCcccccccccccCCCCCCEEecc
Q 048006          536 QTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGE-SLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLS  614 (833)
Q Consensus       536 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls  614 (833)
                      +.++++++.++. +|..+.  +.++.|+|++|+++ .++...+. .+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            567777777773 444332  34677777777776 34443332 56777777777777776666667777777777777


Q ss_pred             CCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECC
Q 048006          615 LNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLS  694 (833)
Q Consensus       615 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  694 (833)
                      +|++++..+..|..+++|                                +.|+|++|++++..|..|..+++|++|+|+
T Consensus        97 ~N~l~~~~~~~~~~l~~L--------------------------------~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  144 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQAL--------------------------------EVLLLYNNHIVVVDRNAFEDMAQLQKLYLS  144 (361)
T ss_dssp             SSCCCEECTTTTTTCTTC--------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcCCcCCHHHhCCCcCC--------------------------------CEEECCCCcccEECHHHhCCcccCCEEECC
Confidence            777765555555555544                                677777777776666677777777777777


Q ss_pred             CccccccCCccc---CCCCCCCEEeCCCCcCcccCCccccCCCC--CCEEECcCCcCccCCC
Q 048006          695 KNHLTGQISPKI---GQLKSLDFLDLSRNQLVGGIPSSLSQLSG--LSVMDLSYNNLSGKIP  751 (833)
Q Consensus       695 ~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N~l~g~ip  751 (833)
                      +|+|++..+..|   ..+++|+.|||++|+|++..+..+..++.  ++.|++++|++.+.+.
T Consensus       145 ~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             SSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             CCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            777774433334   45677777777777777555555666655  3667777777766543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=2.2e-18  Score=172.09  Aligned_cols=158  Identities=24%  Similarity=0.229  Sum_probs=136.0

Q ss_pred             CcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCC
Q 048006          559 LRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS  638 (833)
Q Consensus       559 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  638 (833)
                      -+.++.+++.+. .+|..+   .++|++|+|++|.+++..|..+..+++|+.|+|++|++....+..|..+++|      
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------   90 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------   90 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence            456778888776 777754   3788899999999988888888899999999999999976655666666665      


Q ss_pred             CcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCC
Q 048006          639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLS  718 (833)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  718 (833)
                                                +.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|+
T Consensus        91 --------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           91 --------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD  143 (229)
T ss_dssp             --------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred             --------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence                                      89999999999777777899999999999999999 788999999999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006          719 RNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       719 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  753 (833)
                      +|++++..+..+..+++|+.|++++|++.|.++..
T Consensus       144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  178 (229)
T 3e6j_A          144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI  178 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence            99999887788999999999999999999988743

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=1.6e-18  Score=171.80  Aligned_cols=157  Identities=23%  Similarity=0.316  Sum_probs=139.0

Q ss_pred             cceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCc
Q 048006          584 LIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL  663 (833)
Q Consensus       584 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (833)
                      -+.++++++.++ .+|..+.  ++|+.|++++|++++..+..|..+++|                               
T Consensus        13 ~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L-------------------------------   58 (220)
T 2v9t_B           13 NNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL-------------------------------   58 (220)
T ss_dssp             TTEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTC-------------------------------
T ss_pred             CCEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCC-------------------------------
Confidence            367899999988 5676654  789999999999998777778777666                               


Q ss_pred             ccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006          664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY  743 (833)
Q Consensus       664 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  743 (833)
                       +.|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|++++..|..|..+++|++|++++
T Consensus        59 -~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  137 (220)
T 2v9t_B           59 -RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD  137 (220)
T ss_dssp             -CEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             -CEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence             9999999999988899999999999999999999977667789999999999999999999999999999999999999


Q ss_pred             CcCccCCCC-ccccCccccccccCCCCCCCCCC
Q 048006          744 NNLSGKIPT-VTQLQSFNDTVYAGNPELCGLPL  775 (833)
Q Consensus       744 N~l~g~ip~-~~~~~~l~~~~~~gn~~lc~~~~  775 (833)
                      |++++..+. ...+..+..+.+.+||+.|+|.+
T Consensus       138 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          138 NKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            999987775 35567788889999999999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.9e-18  Score=178.01  Aligned_cols=170  Identities=26%  Similarity=0.334  Sum_probs=90.9

Q ss_pred             cCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEE
Q 048006          532 LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVL  611 (833)
Q Consensus       532 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L  611 (833)
                      +++|++|++++|.+... + .+..+++|++|++++|+++ .++. +. .+++|++|++++|.+++ ++ .+..+++|++|
T Consensus        45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence            33444444444444322 1 2344444444444444444 2222 22 34455555555554443 12 25555666666


Q ss_pred             eccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEE
Q 048006          612 DLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVAL  691 (833)
Q Consensus       612 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  691 (833)
                      ++++|++.+.  ..+..+++                                |+.|++++|++++.  ..+..+++|++|
T Consensus       118 ~L~~n~i~~~--~~l~~l~~--------------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L  161 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQ--------------------------------LESLYLGNNKITDI--TVLSRLTKLDTL  161 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTT--------------------------------CCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             ECCCCcCCCC--hhhcCCCC--------------------------------CCEEEccCCcCCcc--hhhccCCCCCEE
Confidence            6666665532  22333322                                36666666666643  456666777777


Q ss_pred             ECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 048006          692 NLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG  748 (833)
Q Consensus       692 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  748 (833)
                      ++++|++++..|  +..+++|+.|++++|++++. | .+..+++|+.|++++|+++.
T Consensus       162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             EccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            777777765443  66677777777777777643 3 36677777777777777664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=4.6e-18  Score=168.57  Aligned_cols=156  Identities=19%  Similarity=0.183  Sum_probs=110.6

Q ss_pred             EEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCC
Q 048006          537 TLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLN  616 (833)
Q Consensus       537 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N  616 (833)
                      ++++++|.++. +|..+.  +.+++|++++|++++..|...+..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            44555555442 333221  234556666666653333333335667777777777777666667777888888888888


Q ss_pred             cCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCc
Q 048006          617 NISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKN  696 (833)
Q Consensus       617 ~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  696 (833)
                      ++++..|..|..+++|                                ++|+|++|++++..|..|..+++|++|+|++|
T Consensus        92 ~l~~~~~~~~~~l~~L--------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  139 (220)
T 2v70_A           92 RLENVQHKMFKGLESL--------------------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN  139 (220)
T ss_dssp             CCCCCCGGGGTTCSSC--------------------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred             ccCccCHhHhcCCcCC--------------------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence            8877666667666655                                78888888888777888888899999999999


Q ss_pred             cccccCCcccCCCCCCCEEeCCCCcCcccCC
Q 048006          697 HLTGQISPKIGQLKSLDFLDLSRNQLVGGIP  727 (833)
Q Consensus       697 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  727 (833)
                      ++++..|..|..+++|+.|+|++|++.+..+
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          140 QITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             cCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9998888899999999999999999886543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=1.4e-18  Score=186.73  Aligned_cols=177  Identities=27%  Similarity=0.255  Sum_probs=145.1

Q ss_pred             cEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCcccc-CCCCCcEeccCCCccCCCCCcchhhcCCccceEEec
Q 048006          512 VILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFR-NCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLK  590 (833)
Q Consensus       512 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~  590 (833)
                      +.++++++.++. +|..+.  +.++.|+|++|++++..+..|. .+++|++|+|++|+++ .++...+..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence            688999999884 565543  4689999999999988888887 8999999999999998 5554434478999999999


Q ss_pred             CCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEcc
Q 048006          591 SNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELS  670 (833)
Q Consensus       591 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  670 (833)
                      +|++++..+..|..+++|+.|+|++|++.+..|..|..+++|                                +.|+|+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--------------------------------~~L~L~  144 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL--------------------------------QKLYLS  144 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC--------------------------------CEEECC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC--------------------------------CEEECC
Confidence            999998777789999999999999999988878888777766                                899999


Q ss_pred             CCcCCCCCchhh---hcccCCcEEECCCccccccCCcccCCCCC--CCEEeCCCCcCcc
Q 048006          671 NNNLNGAVPEEI---MDLVGLVALNLSKNHLTGQISPKIGQLKS--LDFLDLSRNQLVG  724 (833)
Q Consensus       671 ~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~  724 (833)
                      +|++++..+..|   ..+++|+.|+|++|+|++..+..+..++.  ++.|+|++|++..
T Consensus       145 ~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             SSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            999996544445   57899999999999999766677887876  4889999999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=5.4e-18  Score=175.95  Aligned_cols=173  Identities=22%  Similarity=0.267  Sum_probs=99.3

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCC
Q 048006           83 LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY  162 (833)
Q Consensus        83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  162 (833)
                      +..+++|++|++++|.++.  ++ .+..+++|++|+|++|.+.+..|  +.++++|++|++++|.+..   ++.+..+++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---~~~l~~l~~  113 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD---LSSLKDLKK  113 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---GGGGTTCTT
T ss_pred             hhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC---ChhhccCCC
Confidence            3456667777777777664  33 36667777777777777764333  6667777777777766632   344566666


Q ss_pred             CcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCc
Q 048006          163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI  242 (833)
Q Consensus       163 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~  242 (833)
                      |++|++++|.++++    ..+..+++|++|++++|.+.+.                             +.+..+++ |+
T Consensus       114 L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~-----------------------------~~l~~l~~-L~  159 (291)
T 1h6t_A          114 LKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI-----------------------------TVLSRLTK-LD  159 (291)
T ss_dssp             CCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC-----------------------------GGGGGCTT-CS
T ss_pred             CCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc-----------------------------hhhccCCC-CC
Confidence            66666666665553    2344555555555555555443                             23344444 55


Q ss_pred             EEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCc
Q 048006          243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG  301 (833)
Q Consensus       243 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  301 (833)
                      +|++++|.+++..+  +..+++|++|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus       160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             EEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            55555555554333  55666666666666666542 2 25666666666666666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=3.2e-18  Score=194.77  Aligned_cols=126  Identities=24%  Similarity=0.271  Sum_probs=66.1

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      +.|+.|++++|.+... + .+..+++|+.|+|++|.+++..+  +..+++|+.|+|++|.+++. + .+..+++|+.|+|
T Consensus        43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEe
Confidence            5555566666655532 2 35555566666666665554433  55555566666666555532 2 4555555555555


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK  621 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  621 (833)
                      ++|++. .++. +. .+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.+.
T Consensus       117 s~N~l~-~l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A          117 EHNGIS-DING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             TTSCCC-CCGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             cCCCCC-CCcc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            555555 2322 22 355555555555555533  3445555555555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=4.1e-18  Score=165.01  Aligned_cols=164  Identities=19%  Similarity=0.248  Sum_probs=121.9

Q ss_pred             ceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCc-cccccccccccCCCCcccccceEEeeccCcchhccccCc
Q 048006          585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL  663 (833)
Q Consensus       585 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (833)
                      +++++++|.++ .+|..+..  +|+.|++++|++.+..+. .|..+++|                               
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L-------------------------------   56 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL-------------------------------   56 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence            45666666664 44544432  677777777777655543 35555555                               


Q ss_pred             ccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006          664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY  743 (833)
Q Consensus       664 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  743 (833)
                       +.|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|++++.+|..+..+++|++|++++
T Consensus        57 -~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           57 -VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             -CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             -CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence             8888888888888888899999999999999999988888899999999999999999999999999999999999999


Q ss_pred             CcCccCCCCccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 048006          744 NNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGIT  791 (833)
Q Consensus       744 N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c~~~~~~~~~~~~  791 (833)
                      |+++|.++......++....+.++...        |..|...++....
T Consensus       136 N~l~c~c~l~~~~~~l~~~~~~~~~~~--------C~~P~~l~~~~l~  175 (192)
T 1w8a_A          136 NPFNCNCHLAWFAEWLRKKSLNGGAAR--------CGAPSKVRDVQIK  175 (192)
T ss_dssp             CCBCCSGGGHHHHHHHHHHCCSGGGCB--------BCSSTTTTTSBGG
T ss_pred             CCccCcCcchHHHHHHHHcCCCCCCCC--------CCCChHHcCCChh
Confidence            999998875543333433344454443        4455555554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=1.8e-17  Score=165.56  Aligned_cols=156  Identities=25%  Similarity=0.306  Sum_probs=137.2

Q ss_pred             ccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccC
Q 048006          583 NLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLG  662 (833)
Q Consensus       583 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  662 (833)
                      +.+.++.+++.+. .+|..+.  ++|++|+|++|.+++..|..|..+++|                              
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L------------------------------   66 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINL------------------------------   66 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC------------------------------
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCC------------------------------
Confidence            4678999999987 5666554  899999999999998888888877776                              


Q ss_pred             cccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECc
Q 048006          663 LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS  742 (833)
Q Consensus       663 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  742 (833)
                        +.|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+++ .+|..+..+++|++|+++
T Consensus        67 --~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           67 --KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD  143 (229)
T ss_dssp             --CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred             --cEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence              99999999998666677899999999999999999887888999999999999999999 789999999999999999


Q ss_pred             CCcCccCCCC-ccccCccccccccCCCCCCCCC
Q 048006          743 YNNLSGKIPT-VTQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       743 ~N~l~g~ip~-~~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      +|++++..+. ...+..+..+.+.|||+.|+|+
T Consensus       144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9999976654 2556778888899999999885

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=2.5e-17  Score=187.45  Aligned_cols=187  Identities=26%  Similarity=0.358  Sum_probs=96.5

Q ss_pred             EEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCc
Q 048006          489 YVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNA  568 (833)
Q Consensus       489 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  568 (833)
                      .+.+..+.+.+..+  +..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..+  +..+++|+.|+|++|.
T Consensus        25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             HHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence            33444444443322  34455555566666555532 2 35555566666666666554433  5555666666666665


Q ss_pred             cCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEE
Q 048006          569 LYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLML  648 (833)
Q Consensus       569 l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~  648 (833)
                      +. .+| .+. .+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|++++.  ..+..+++|                
T Consensus        99 l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L----------------  155 (605)
T 1m9s_A           99 IK-DLS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL----------------  155 (605)
T ss_dssp             CC-CCT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC----------------
T ss_pred             CC-CCh-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC----------------
Confidence            55 333 222 355566666666655532  2355555666666666655532  223333322                


Q ss_pred             eeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006          649 TWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       649 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  724 (833)
                                      +.|+|++|++++..|  +..+++|+.|+|++|+|++.  +.+..+++|+.|+|++|++.+
T Consensus       156 ----------------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          156 ----------------DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             ----------------SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             ----------------CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence                            555555555554433  55555555555555555542  245555555555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=5.1e-20  Score=208.34  Aligned_cols=192  Identities=21%  Similarity=0.209  Sum_probs=139.3

Q ss_pred             cCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCc-------------CccccCccccCCCCCcEec-cCCCccCC
Q 048006          506 WTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR-------------LTGELSSSFRNCSQLRLLD-LGKNALYG  571 (833)
Q Consensus       506 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~  571 (833)
                      ..++.|+.|+|++|+++ .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+  
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence            34566777777777776 556667777777777775554             3445556666666666666 454432  


Q ss_pred             CCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeec
Q 048006          572 EIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWK  651 (833)
Q Consensus       572 ~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~  651 (833)
                                ..|+.+.+++|.+....+      ..|+.|+|++|.+++ +|. ++.+++|                   
T Consensus       423 ----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L-------------------  465 (567)
T 1dce_A          423 ----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV-------------------  465 (567)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC-------------------
T ss_pred             ----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC-------------------
Confidence                      234444555666653222      248888888888875 554 6666555                   


Q ss_pred             cCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccC-Cccc
Q 048006          652 GSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGI-PSSL  730 (833)
Q Consensus       652 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l  730 (833)
                                   +.|+|++|+++ .+|..++.+++|+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.+ |..+
T Consensus       466 -------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l  529 (567)
T 1dce_A          466 -------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL  529 (567)
T ss_dssp             -------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred             -------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence                         88888888888 788888888899999999998886 56 7888889999999999988776 8888


Q ss_pred             cCCCCCCEEECcCCcCccCCCCc
Q 048006          731 SQLSGLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       731 ~~l~~L~~L~ls~N~l~g~ip~~  753 (833)
                      ..+++|+.|++++|++++.+|..
T Consensus       530 ~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          530 VSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             GGCTTCCEEECTTSGGGGSSSCT
T ss_pred             hcCCCCCEEEecCCcCCCCccHH
Confidence            88889999999999988877754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=6.4e-18  Score=172.50  Aligned_cols=171  Identities=23%  Similarity=0.286  Sum_probs=118.5

Q ss_pred             CcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCE
Q 048006          531 FLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQV  610 (833)
Q Consensus       531 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~  610 (833)
                      .+.++..+++++|.+++..  .+..+++|++|++++|.+. .+| .+. .+++|++|++++|++++..+  +..+++|+.
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            3455666666666666443  4566677777777777766 555 333 46777777777777775433  677777777


Q ss_pred             EeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcE
Q 048006          611 LDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVA  690 (833)
Q Consensus       611 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  690 (833)
                      |++++|++++. |... .                                 ++|+.|++++|++++ ++ .+..+++|++
T Consensus        90 L~L~~N~l~~l-~~~~-~---------------------------------~~L~~L~L~~N~l~~-~~-~l~~l~~L~~  132 (263)
T 1xeu_A           90 LSVNRNRLKNL-NGIP-S---------------------------------ACLSRLFLDNNELRD-TD-SLIHLKNLEI  132 (263)
T ss_dssp             EECCSSCCSCC-TTCC-C---------------------------------SSCCEEECCSSCCSB-SG-GGTTCTTCCE
T ss_pred             EECCCCccCCc-Cccc-c---------------------------------CcccEEEccCCccCC-Ch-hhcCcccccE
Confidence            77777777642 2111 1                                 234778888888875 33 4778888888


Q ss_pred             EECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccC
Q 048006          691 LNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGK  749 (833)
Q Consensus       691 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  749 (833)
                      |+|++|++++. + .+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       133 L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          133 LSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             EECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             EECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            88888888754 3 677888888888888888866  5678888888888888888765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=8.3e-19  Score=204.96  Aligned_cols=262  Identities=19%  Similarity=0.130  Sum_probs=126.7

Q ss_pred             CCHHHHHHHHHhhhcCcCC-CCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCC
Q 048006           11 CIDEEREALLTFKASLVDE-SGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDL   89 (833)
Q Consensus        11 ~~~~~~~~ll~~k~~~~~~-~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L   89 (833)
                      ..+.++.+|+++..+...+ ...-..|..  .....+.|.++++.  +++++.++|.+     +.+.. .+..+.....|
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s--~~~~~~l~L~~-----n~~~~-~~~~~l~~l~L  198 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVS--TPLTPKIELFA-----NGKDE-ANQALLQHKKL  198 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceec--CCccceEEeeC-----CCCCc-chhhHhhcCcc
Confidence            3456788999998776422 223445642  34566789999886  47899999987     44443 23222222222


Q ss_pred             CE-----EeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCc
Q 048006           90 RH-----LNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLR  164 (833)
Q Consensus        90 ~~-----L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  164 (833)
                      +.     ++++.|.+.  ..|+.+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.+.  ..+..++++++|+
T Consensus       199 s~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~  273 (727)
T 4b8c_D          199 SQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLR  273 (727)
T ss_dssp             -------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCC
T ss_pred             CcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCC
Confidence            22     333334443  25778899999999999999998 78888889999999999999987  4456788999999


Q ss_pred             EEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEE
Q 048006          165 YLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISI  244 (833)
Q Consensus       165 ~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L  244 (833)
                      +|+|++|.++.   +|..++.+++|++|+|++|.+. .+|.  .+.. +++|+.|+|++|.+++.+|..+.........+
T Consensus       274 ~L~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~l~-~lp~--~~~~-l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l  346 (727)
T 4b8c_D          274 VLDLSHNRLTS---LPAELGSCFQLKYFYFFDNMVT-TLPW--EFGN-LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF  346 (727)
T ss_dssp             EEECTTSCCSS---CCSSGGGGTTCSEEECCSSCCC-CCCS--STTS-CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred             EEeCcCCcCCc---cChhhcCCCCCCEEECCCCCCC-ccCh--hhhc-CCCccEEeCCCCccCCCChHHHhhcchhhhHH
Confidence            99999999885   5667888999999999999886 4565  4333 48899999999999888877776544323457


Q ss_pred             EccCccccccccccccCCCCCcEEECcCC--------cccccccccccCCCCCcEEEccCCCCC
Q 048006          245 DLGFNQLQGSIPESFQHMVYLEHLRLSFN--------ELEGGIPKFFGNMCSLITLNLSNNKLS  300 (833)
Q Consensus       245 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~Ls~n~l~  300 (833)
                      +|++|.+++.+|..      |+.|+++.|        .+.+..+..+..+..++...+++|.+.
T Consensus       347 ~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          347 YLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred             hhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            78888888877764      455666666        333333334445555566666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.9e-17  Score=161.27  Aligned_cols=152  Identities=14%  Similarity=0.205  Sum_probs=84.4

Q ss_pred             CCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccccccccc
Q 048006          556 CSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE  635 (833)
Q Consensus       556 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  635 (833)
                      +++|++|++++|.+. .+| .+. .+++|++|++++|.+.  .+..+..+++|++|++++|++++..|..+..+++|   
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---  114 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL---  114 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC---
T ss_pred             cCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC---
Confidence            334444444444444 333 222 3445555555555333  12244555555566666655555445444444443   


Q ss_pred             CCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCcc-ccccCCcccCCCCCCCE
Q 048006          636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNH-LTGQISPKIGQLKSLDF  714 (833)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~  714 (833)
                                                   +.|++++|++++..|..+..+++|++|++++|+ ++ .+| .+..+++|+.
T Consensus       115 -----------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~  163 (197)
T 4ezg_A          115 -----------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKS  163 (197)
T ss_dssp             -----------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCE
T ss_pred             -----------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCE
Confidence                                         566666666665566666677777777777776 44 344 5667777777


Q ss_pred             EeCCCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 048006          715 LDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG  748 (833)
Q Consensus       715 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  748 (833)
                      |++++|++++ ++ .+..+++|++|++++|++.+
T Consensus       164 L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          164 LNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             EECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             EECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            7777777764 33 56677777777777777643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=3.1e-20  Score=210.18  Aligned_cols=202  Identities=21%  Similarity=0.233  Sum_probs=159.6

Q ss_pred             CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCc-------------ccccCCCCccCcCCccEEE-cccCcCcccc
Q 048006          484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNS-------------FSGRIPDSMGFLQNIQTLS-LHNNRLTGEL  549 (833)
Q Consensus       484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~  549 (833)
                      ++.|+.|++++|+++ .+|..++.+++|+.|++++|.             +.+..|..++.+++|+.|+ ++.|.+.   
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~---  423 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD---  423 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence            467778888888887 667788888888888887664             4566777788889999988 6766543   


Q ss_pred             CccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccc
Q 048006          550 SSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNF  629 (833)
Q Consensus       550 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  629 (833)
                              .|+.+.+++|.+. .+|.      ..|+.|+|++|.+++ +|. +..+++|+.|+|++|.++ .+|..|+.+
T Consensus       424 --------~L~~l~l~~n~i~-~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  485 (567)
T 1dce_A          424 --------DLRSKFLLENSVL-KMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL  485 (567)
T ss_dssp             --------HHHHHHHHHHHHH-HHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred             --------hhhhhhhhccccc-ccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence                    4566777788776 3332      258889999998885 565 888899999999999988 778888777


Q ss_pred             ccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccC-CcccCC
Q 048006          630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQI-SPKIGQ  708 (833)
Q Consensus       630 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~  708 (833)
                      ++|                                +.|+|++|++++ +| .++.+++|++|+|++|+|++.+ |..++.
T Consensus       486 ~~L--------------------------------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~  531 (567)
T 1dce_A          486 RCL--------------------------------EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS  531 (567)
T ss_dssp             TTC--------------------------------CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred             CCC--------------------------------CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence            666                                889999999985 67 7899999999999999999877 899999


Q ss_pred             CCCCCEEeCCCCcCcccCCcc---ccCCCCCCEEEC
Q 048006          709 LKSLDFLDLSRNQLVGGIPSS---LSQLSGLSVMDL  741 (833)
Q Consensus       709 l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~l  741 (833)
                      +++|+.|+|++|++++.+|..   +..+++|+.||+
T Consensus       532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999999999998766532   334788888874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=4.4e-17  Score=158.66  Aligned_cols=154  Identities=19%  Similarity=0.245  Sum_probs=97.7

Q ss_pred             cCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCC
Q 048006          530 GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQ  609 (833)
Q Consensus       530 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~  609 (833)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++ .+. .+++|++|++++|++++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            34455555555555555 333 4555666666666666543 232 333 466777777777777666666677777777


Q ss_pred             EEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCc-CCCCCchhhhcccCC
Q 048006          610 VLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNN-LNGAVPEEIMDLVGL  688 (833)
Q Consensus       610 ~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L  688 (833)
                      +|++++|++++..|..+..+++|                                +.|++++|+ ++ .+| .+..+++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L--------------------------------~~L~L~~n~~i~-~~~-~l~~l~~L  161 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKV--------------------------------NSIDLSYNGAIT-DIM-PLKTLPEL  161 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSC--------------------------------CEEECCSCTBCC-CCG-GGGGCSSC
T ss_pred             EEEecCCccCcHhHHHHhhCCCC--------------------------------CEEEccCCCCcc-ccH-hhcCCCCC
Confidence            77777777776556555555544                                777777776 44 455 57778888


Q ss_pred             cEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006          689 VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       689 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  724 (833)
                      ++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       162 ~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          162 KSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            888888888875 33 67778888888888888753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=3.1e-17  Score=158.81  Aligned_cols=176  Identities=20%  Similarity=0.217  Sum_probs=124.6

Q ss_pred             cEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccc-cccCCCCCCEEeccCCcCcccCCccccccccccccCCC
Q 048006          560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPF-QLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS  638 (833)
Q Consensus       560 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  638 (833)
                      +++++++|.+. .+|..+.   .++++|++++|.+++..+. .+..+++|++|+|++|++++..|..|..+++|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            56777777775 7776554   3778888888888765554 47788888888888888888778777776666      


Q ss_pred             CcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCC
Q 048006          639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLS  718 (833)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  718 (833)
                                                +.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus        81 --------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           81 --------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             --------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             --------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence                                      888888888888888888889999999999999999999999999999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCC
Q 048006          719 RNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       719 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      +|++.+..+-..- ...++...+..+...+.-|..  +....-.++..+...|..+
T Consensus       135 ~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~  187 (192)
T 1w8a_A          135 SNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             TCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred             CCCccCcCcchHH-HHHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCC
Confidence            9999876542110 011222234445555555543  2222223344455556443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=1.3e-17  Score=170.11  Aligned_cols=123  Identities=18%  Similarity=0.299  Sum_probs=65.7

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      .++..+++++|.+++..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            44555666666666432  35566666666666666653 33 45566666666666666664433  556666666666


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS  619 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  619 (833)
                      ++|+++ .+|....   ++|++|++++|.+++. + .+..+++|+.|++++|+++
T Consensus        93 ~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           93 NRNRLK-NLNGIPS---ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             CSSCCS-CCTTCCC---SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCC
T ss_pred             CCCccC-CcCcccc---CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCC
Confidence            666665 3433211   4455555555554432 1 2444444444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.3e-17  Score=194.78  Aligned_cols=189  Identities=23%  Similarity=0.236  Sum_probs=107.9

Q ss_pred             ccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccc
Q 048006          516 LENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH  595 (833)
Q Consensus       516 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~  595 (833)
                      ++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+. .+++|++|+|++|.++
T Consensus       208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS
T ss_pred             cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC
Confidence            3344444 45667777888888888888887 56666667888888888888887 7887765 6888888888888888


Q ss_pred             ccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCC
Q 048006          596 GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN  675 (833)
Q Consensus       596 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  675 (833)
                       .+|..+..+++|++|+|++|.|+ .+|..|+++++|                                +.|+|++|.|+
T Consensus       284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L--------------------------------~~L~L~~N~l~  329 (727)
T 4b8c_D          284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL--------------------------------QFLGVEGNPLE  329 (727)
T ss_dssp             -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC--------------------------------CCEECTTSCCC
T ss_pred             -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc--------------------------------cEEeCCCCccC
Confidence             66878888888888888888886 667667766666                                77888888888


Q ss_pred             CCCchhhhcccC-CcEEECCCccccccCCcccCCCCCCCEEeCCCC--------cCcccCCccccCCCCCCEEECcCCcC
Q 048006          676 GAVPEEIMDLVG-LVALNLSKNHLTGQISPKIGQLKSLDFLDLSRN--------QLVGGIPSSLSQLSGLSVMDLSYNNL  746 (833)
Q Consensus       676 ~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l  746 (833)
                      +.+|..+..+.. +..|+|++|.+++.+|..      |+.|++++|        .+.+..+..+..+..+....+++|-+
T Consensus       330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------------------------CC
T ss_pred             CCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence            877777765422 234778888888777753      455666666        44444555556667777788888887


Q ss_pred             cc
Q 048006          747 SG  748 (833)
Q Consensus       747 ~g  748 (833)
                      .+
T Consensus       404 ~~  405 (727)
T 4b8c_D          404 CQ  405 (727)
T ss_dssp             CG
T ss_pred             cc
Confidence            64

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=2.7e-16  Score=152.06  Aligned_cols=163  Identities=21%  Similarity=0.226  Sum_probs=114.7

Q ss_pred             ceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcc
Q 048006          585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLV  664 (833)
Q Consensus       585 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  664 (833)
                      +++++++|.++ .+|..+.  ++|+.|++++|+++ .+|..|.+++.|                                
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L--------------------------------   56 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL--------------------------------   56 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence            45566666655 3444332  46777777777776 555566555555                                


Q ss_pred             cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006          665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN  744 (833)
Q Consensus       665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  744 (833)
                      +.|+|++|++++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus        57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            77888888888777777888899999999999999888888999999999999999999777778889999999999999


Q ss_pred             cCccCCCCccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 048006          745 NLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGIT  791 (833)
Q Consensus       745 ~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c~~~~~~~~~~~~  791 (833)
                      ++.+.+.......++......        +-...|..|+..++....
T Consensus       137 ~~~C~c~l~~l~~~~~~~~~~--------~~~~~C~~P~~l~g~~l~  175 (193)
T 2wfh_A          137 PLYCDCNMQWLSDWVKSEYKE--------PGIARCAGPGEMADKLLL  175 (193)
T ss_dssp             CEECSGGGHHHHHHHHHSSCC--------CSCCBEEESGGGTTCBTT
T ss_pred             CeecCCcCHHHHHHHHhccCC--------CCCcCcCCchHHCCCCcc
Confidence            998876543222222211111        112367777777665554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=4.1e-16  Score=150.75  Aligned_cols=112  Identities=24%  Similarity=0.325  Sum_probs=102.1

Q ss_pred             cccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECc
Q 048006          663 LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS  742 (833)
Q Consensus       663 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  742 (833)
                      .++.|++++|+++ .+|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            3599999999998 788999999999999999999998888899999999999999999999999999999999999999


Q ss_pred             CCcCccCCCC-ccccCccccccccCCCCCCCCCC
Q 048006          743 YNNLSGKIPT-VTQLQSFNDTVYAGNPELCGLPL  775 (833)
Q Consensus       743 ~N~l~g~ip~-~~~~~~l~~~~~~gn~~lc~~~~  775 (833)
                      +|++++..+. ...+..+..+.+.+|||.|+|.+
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            9999976664 35577788889999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=2.7e-16  Score=166.62  Aligned_cols=100  Identities=19%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             CCCCcEEECcCCccc--ccccccccCCCCCcEEEccCCCCCchhhHHHhh--------cCCccccCCccEEEcccccccc
Q 048006          262 MVYLEHLRLSFNELE--GGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQN--------LSSGCLENSLKSLYLENSLTGV  331 (833)
Q Consensus       262 l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--------l~~~~~~~~L~~L~L~~~~~~~  331 (833)
                      +++|++|||++|++.  .....   .++.++.+.+..|.+   .+..|.+        ++      +|+.+++.+ .+..
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~------~L~~l~L~~-~i~~  114 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQ------TLEKVILSE-KIKN  114 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTEEEECT------TCCC-CBCT-TCCE
T ss_pred             hccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcccccccccccC------CCcEEECCc-cccc
Confidence            566666666666665  11111   122233444444422   2233444        55      667777655 5666


Q ss_pred             cChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccC
Q 048006          332 ISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSS  374 (833)
Q Consensus       332 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  374 (833)
                      |+..+|.++++|+++++.+|.+....+..|..+.++..+....
T Consensus       115 I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          115 IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             ECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             hhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            7777777777777777777777666666666666666555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=8.5e-16  Score=162.82  Aligned_cols=220  Identities=13%  Similarity=0.083  Sum_probs=146.3

Q ss_pred             CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCc----CccccCccccCCCCC
Q 048006          484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR----LTGELSSSFRNCSQL  559 (833)
Q Consensus       484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L  559 (833)
                      +++|+.+++.+ .++.+.+.+|.+|++|+.+++++|.+....+.+|.++.++..+.+..+.    ........|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            56777777777 6665666667777777777777777766666677776666666655432    222334455666666


Q ss_pred             c-EeccCCCccCCCCCcchhh---cCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccccccccc
Q 048006          560 R-LLDLGKNALYGEIPTWMGE---SLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE  635 (833)
Q Consensus       560 ~-~L~L~~n~l~~~~p~~~~~---~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  635 (833)
                      + .+.+...   +.++..++.   ...++..+.+.++-...........+++|+.++|++|+++...+.+|.++++|   
T Consensus       179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L---  252 (329)
T 3sb4_A          179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL---  252 (329)
T ss_dssp             EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred             ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence            6 4444332   133333221   14455666665542221111111236888888888888876666777777666   


Q ss_pred             CCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCc-EEECCCccccccCCcccCCCCCCCE
Q 048006          636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLV-ALNLSKNHLTGQISPKIGQLKSLDF  714 (833)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~  714 (833)
                                                   +.|++.+| ++...+..|.++++|+ .+++.+ .++...+.+|.++++|+.
T Consensus       253 -----------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          253 -----------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             -----------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             -----------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence                                         78888887 7656667788888888 888888 777677788888888888


Q ss_pred             EeCCCCcCcccCCccccCCCCCCEEEC
Q 048006          715 LDLSRNQLVGGIPSSLSQLSGLSVMDL  741 (833)
Q Consensus       715 L~Ls~N~l~~~~p~~l~~l~~L~~L~l  741 (833)
                      +++++|+++...+..|.++++|+.++.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            888888888777788888888888764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=9.2e-16  Score=145.17  Aligned_cols=134  Identities=25%  Similarity=0.214  Sum_probs=95.6

Q ss_pred             CCccceEEecCCccc-ccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhcc
Q 048006          581 LSNLIVLSLKSNKFH-GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRS  659 (833)
Q Consensus       581 l~~L~~L~L~~N~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  659 (833)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|                           
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------------------------   73 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL---------------------------   73 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC---------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC---------------------------
Confidence            356666777777666 55666666677777777777776644  344444443                           


Q ss_pred             ccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccC-CcccCCCCCCCEEeCCCCcCcccCC---ccccCCCC
Q 048006          660 TLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQI-SPKIGQLKSLDFLDLSRNQLVGGIP---SSLSQLSG  735 (833)
Q Consensus       660 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~  735 (833)
                           +.|++++|++++.+|..+..+++|++|+|++|++++.. +..+..+++|+.|++++|++++..+   ..+..+++
T Consensus        74 -----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  148 (168)
T 2ell_A           74 -----KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ  148 (168)
T ss_dssp             -----CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred             -----CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence                 77777777777667777777888888888888887542 2677888888888888888886555   47778888


Q ss_pred             CCEEECcCCcCcc
Q 048006          736 LSVMDLSYNNLSG  748 (833)
Q Consensus       736 L~~L~ls~N~l~g  748 (833)
                      |++|++++|.+..
T Consensus       149 L~~L~l~~n~~~~  161 (168)
T 2ell_A          149 LTYLDGYDREDQE  161 (168)
T ss_dssp             CCEETTEETTSCB
T ss_pred             CcEecCCCCChhh
Confidence            8888888887763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1e-15  Score=141.62  Aligned_cols=129  Identities=22%  Similarity=0.223  Sum_probs=103.4

Q ss_pred             CCccceEEecCCccc-ccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhcc
Q 048006          581 LSNLIVLSLKSNKFH-GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRS  659 (833)
Q Consensus       581 l~~L~~L~L~~N~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  659 (833)
                      .++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|                           
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------------------------   66 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL---------------------------   66 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC---------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC---------------------------
Confidence            467888888888887 67777778888888888888888754  445444444                           


Q ss_pred             ccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCcccccc-CCcccCCCCCCCEEeCCCCcCcccCC---ccccCCCC
Q 048006          660 TLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQ-ISPKIGQLKSLDFLDLSRNQLVGGIP---SSLSQLSG  735 (833)
Q Consensus       660 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~  735 (833)
                           +.|++++|++++.+|..+..+++|++|++++|++++. .+..++.+++|++|++++|++++..+   ..+..+++
T Consensus        67 -----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  141 (149)
T 2je0_A           67 -----KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ  141 (149)
T ss_dssp             -----CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred             -----CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence                 8889999998877888888899999999999998864 34778889999999999999987666   57888899


Q ss_pred             CCEEECcC
Q 048006          736 LSVMDLSY  743 (833)
Q Consensus       736 L~~L~ls~  743 (833)
                      |+.||+++
T Consensus       142 L~~L~l~d  149 (149)
T 2je0_A          142 LTYLDGYD  149 (149)
T ss_dssp             CCEETTBC
T ss_pred             cccccCCC
Confidence            99998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=3.9e-15  Score=142.17  Aligned_cols=135  Identities=21%  Similarity=0.236  Sum_probs=101.7

Q ss_pred             cceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCc
Q 048006          584 LIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL  663 (833)
Q Consensus       584 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (833)
                      .+.+++++|.++ .+|..+  .++|+.|++++|++.+..+..|..+++|                               
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------   54 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL-------------------------------   54 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc-------------------------------
Confidence            345556666555 233322  2567777777777765555555555544                               


Q ss_pred             ccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006          664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY  743 (833)
Q Consensus       664 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  743 (833)
                       ++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        55 -~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           55 -TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             -SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             -cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence             7777888887766666678889999999999999977777788999999999999999977777788899999999999


Q ss_pred             CcCccCCCCc
Q 048006          744 NNLSGKIPTV  753 (833)
Q Consensus       744 N~l~g~ip~~  753 (833)
                      |++.|.+|..
T Consensus       134 N~~~~~~~~l  143 (177)
T 2o6r_A          134 NPWDCSCPRI  143 (177)
T ss_dssp             SCBCCCHHHH
T ss_pred             CCeeccCccH
Confidence            9999988743

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2.4e-15  Score=142.27  Aligned_cols=136  Identities=26%  Similarity=0.251  Sum_probs=95.7

Q ss_pred             CCCcEeccCCCccC-CCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccccccccc
Q 048006          557 SQLRLLDLGKNALY-GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE  635 (833)
Q Consensus       557 ~~L~~L~L~~n~l~-~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  635 (833)
                      ++|++|++++|.+. +.+|..+. .+++|++|++++|.+++.  ..+..+++|++|++++|++.+.+|..+..+++|   
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---   97 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL---   97 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC---
T ss_pred             ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC---
Confidence            55666666666665 55665543 466777777777776654  566777777778888777776666555555544   


Q ss_pred             CCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCC-chhhhcccCCcEEECCCccccccCC---cccCCCCC
Q 048006          636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAV-PEEIMDLVGLVALNLSKNHLTGQIS---PKIGQLKS  711 (833)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~  711 (833)
                                                   +.|++++|++++.. +..+..+++|++|++++|.+++..+   ..+..+++
T Consensus        98 -----------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  148 (168)
T 2ell_A           98 -----------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ  148 (168)
T ss_dssp             -----------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred             -----------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence                                         77888888887532 2677888888888888888886554   47888888


Q ss_pred             CCEEeCCCCcCcccCCc
Q 048006          712 LDFLDLSRNQLVGGIPS  728 (833)
Q Consensus       712 L~~L~Ls~N~l~~~~p~  728 (833)
                      |+.|++++|.+. .+|.
T Consensus       149 L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          149 LTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CCEETTEETTSC-BCCS
T ss_pred             CcEecCCCCChh-hccc
Confidence            888888888887 4444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=2.1e-14  Score=137.07  Aligned_cols=133  Identities=26%  Similarity=0.221  Sum_probs=106.8

Q ss_pred             CcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCC
Q 048006          559 LRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS  638 (833)
Q Consensus       559 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  638 (833)
                      .+.+++++|.+. .+|..+   .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|      
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------   78 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------   78 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence            456777777776 666543   3578888888888886666677888889999999998886666666666655      


Q ss_pred             CcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCC
Q 048006          639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLS  718 (833)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  718 (833)
                                                +.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus        79 --------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           79 --------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             --------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             --------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence                                      889999999987777778899999999999999997766677889999999999


Q ss_pred             CCcCcccCC
Q 048006          719 RNQLVGGIP  727 (833)
Q Consensus       719 ~N~l~~~~p  727 (833)
                      +|++.+..|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            999987654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=8.1e-15  Score=135.50  Aligned_cols=127  Identities=24%  Similarity=0.247  Sum_probs=98.1

Q ss_pred             CcccEEEcCCCcCc-CCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006          485 SKLTYVDLSSNLLS-GKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD  563 (833)
Q Consensus       485 ~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  563 (833)
                      +++++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            67888888888887 67777778888888888888888865  6677888888888888888876777777788888888


Q ss_pred             cCCCccCCCCC--cchhhcCCccceEEecCCccccccc---ccccCCCCCCEEeccC
Q 048006          564 LGKNALYGEIP--TWMGESLSNLIVLSLKSNKFHGKIP---FQLCQLAFLQVLDLSL  615 (833)
Q Consensus       564 L~~n~l~~~~p--~~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~Ls~  615 (833)
                      +++|++++ +|  ..+. .+++|++|++++|++++..+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~-~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKD-LSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCS-HHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCC-hHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            88888873 33  4444 57888888888888876554   4677788888887763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.53  E-value=2.3e-13  Score=146.97  Aligned_cols=219  Identities=12%  Similarity=0.099  Sum_probs=154.2

Q ss_pred             cccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccC
Q 048006          486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG  565 (833)
Q Consensus       486 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  565 (833)
                      +|+.+.+.. .++...+.+|.+|++|+.+++.+|.++.....+|. +.+|+.+.+..+ ++.+...+|.+|++|+.+++.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            355555554 44445556777788888888887777766556665 577888888744 666777788888888888887


Q ss_pred             CCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc-----ccCCccccccccccccCCCCc
Q 048006          566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS-----GKIPKCFNNFTAMTQERSSDP  640 (833)
Q Consensus       566 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~l~~~~~  640 (833)
                      .+ ++ .++...+.+ .+|+.+.+. +.++..-..+|.++++|+.+++.+|.+.     ...+.+|.++++|        
T Consensus       235 ~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L--------  302 (401)
T 4fdw_A          235 EN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL--------  302 (401)
T ss_dssp             TT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC--------
T ss_pred             CC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC--------
Confidence            65 44 666666644 678888884 4455555677888888888888877664     2334556555555        


Q ss_pred             ccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCC
Q 048006          641 TIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRN  720 (833)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  720 (833)
                                              +.+++. +.++..-...|.++++|+.++|..| ++...+.+|.++ +|+.+++++|
T Consensus       303 ------------------------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          303 ------------------------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             ------------------------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred             ------------------------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence                                    777777 3466555667888888888888554 666667788888 8888888888


Q ss_pred             cCcccCCccccCCC-CCCEEECcCCcC
Q 048006          721 QLVGGIPSSLSQLS-GLSVMDLSYNNL  746 (833)
Q Consensus       721 ~l~~~~p~~l~~l~-~L~~L~ls~N~l  746 (833)
                      .+....+..|.+++ .++.+++..+.+
T Consensus       356 ~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          356 TPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCcccccccccCCCCCccEEEeCHHHH
Confidence            88877777777774 677887776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.52  E-value=3.1e-13  Score=146.00  Aligned_cols=265  Identities=11%  Similarity=0.097  Sum_probs=141.3

Q ss_pred             CCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCC
Q 048006          262 MVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNIS  341 (833)
Q Consensus       262 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~  341 (833)
                      +..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++......|.+.       +|+.+.+.+ .+..|+..+|.+++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-------~L~~i~lp~-~l~~I~~~aF~~c~  180 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-------TVQEIVFPS-TLEQLKEDIFYYCY  180 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-------CCCEEECCT-TCCEECSSTTTTCT
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-------CceEEEeCC-CccEehHHHhhCcc
Confidence            34555555543 2343444455553 5666666554 444444444442       466666643 45566666777777


Q ss_pred             CCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEc
Q 048006          342 NLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDL  421 (833)
Q Consensus       342 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L  421 (833)
                      +|+.+++..|.+.......|. ..+|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|..          
T Consensus       181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~----------  247 (401)
T 4fdw_A          181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE----------  247 (401)
T ss_dssp             TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT----------
T ss_pred             cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc----------
Confidence            777777777776665555555 355666666532 44444455555555555555443 22222222221          


Q ss_pred             ccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCC
Q 048006          422 ASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKL  501 (833)
Q Consensus       422 ~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~  501 (833)
                                                                                     .+|+.+.+ .+.++...
T Consensus       248 ---------------------------------------------------------------~~L~~i~l-p~~i~~I~  263 (401)
T 4fdw_A          248 ---------------------------------------------------------------SGITTVKL-PNGVTNIA  263 (401)
T ss_dssp             ---------------------------------------------------------------CCCSEEEE-ETTCCEEC
T ss_pred             ---------------------------------------------------------------CCccEEEe-CCCccEEC
Confidence                                                                           23344444 22233334


Q ss_pred             CCcccCCCCCcEEEccCCccc-----ccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcc
Q 048006          502 PDCWWTFDSLVILNLENNSFS-----GRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTW  576 (833)
Q Consensus       502 ~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  576 (833)
                      ..+|.+|++|+.+++.+|.+.     ...+.+|.++++|+.+.+. +.++.+...+|.+|++|+.+++..+ ++ .++..
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~  340 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QINFS  340 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EECTT
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EEcHH
Confidence            445556666666666555443     3444556666666666666 3355555566666666666666443 43 45554


Q ss_pred             hhhcCCccceEEecCCcccccccccccCCC-CCCEEeccCCcC
Q 048006          577 MGESLSNLIVLSLKSNKFHGKIPFQLCQLA-FLQVLDLSLNNI  618 (833)
Q Consensus       577 ~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l  618 (833)
                      .+.++ +|+.+++.+|.+....+..|.+++ .++.|.+..+.+
T Consensus       341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            45455 666666666665544445555553 566666665544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=5.8e-16  Score=150.85  Aligned_cols=155  Identities=26%  Similarity=0.303  Sum_probs=107.6

Q ss_pred             ccCCCCCcEeccCCCccCCCCCc------chhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccc
Q 048006          553 FRNCSQLRLLDLGKNALYGEIPT------WMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCF  626 (833)
Q Consensus       553 ~~~l~~L~~L~L~~n~l~~~~p~------~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~  626 (833)
                      +.....++.++++.+.+.|.+|.      .+. .+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence            34445566666666666665554      444 57777777777777775 55 6777777778888777776 455555


Q ss_pred             cccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCC-cc
Q 048006          627 NNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQIS-PK  705 (833)
Q Consensus       627 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~  705 (833)
                      ..+++|                                +.|++++|++++ +| .+..+++|++|++++|++++..+ ..
T Consensus        90 ~~~~~L--------------------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~  135 (198)
T 1ds9_A           90 AVADTL--------------------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDK  135 (198)
T ss_dssp             HHHHHC--------------------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHH
T ss_pred             hcCCcC--------------------------------CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHH
Confidence            444444                                788888888875 44 57788888888888888875332 46


Q ss_pred             cCCCCCCCEEeCCCCcCcccCCcc----------ccCCCCCCEEECcCCcCc
Q 048006          706 IGQLKSLDFLDLSRNQLVGGIPSS----------LSQLSGLSVMDLSYNNLS  747 (833)
Q Consensus       706 l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~  747 (833)
                      +..+++|++|++++|++.+.+|..          +..+++|+.||  +|+++
T Consensus       136 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             HhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            778888888888888887766653          67788888876  56554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=6e-14  Score=133.65  Aligned_cols=81  Identities=25%  Similarity=0.315  Sum_probs=42.7

Q ss_pred             cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCc--ccCCCCCCCEEeCCCCcCcccCCcc----ccCCCCCCE
Q 048006          665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISP--KIGQLKSLDFLDLSRNQLVGGIPSS----LSQLSGLSV  738 (833)
Q Consensus       665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~  738 (833)
                      +.|++++|++++..+..+..+++|++|+|++|+++ .+|.  .+..+++|+.|++++|+++ .+|..    +..+++|++
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence            44444444444332333355555555555555554 3333  4555566666666666665 33432    556666666


Q ss_pred             EECcCCcCc
Q 048006          739 MDLSYNNLS  747 (833)
Q Consensus       739 L~ls~N~l~  747 (833)
                      ||+++|...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            666666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=2.2e-13  Score=128.56  Aligned_cols=90  Identities=24%  Similarity=0.238  Sum_probs=81.8

Q ss_pred             ccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006          664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY  743 (833)
Q Consensus       664 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  743 (833)
                      ++.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|++++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            48899999999988888899999999999999999988777889999999999999999988888899999999999999


Q ss_pred             CcCccCCCCc
Q 048006          744 NNLSGKIPTV  753 (833)
Q Consensus       744 N~l~g~ip~~  753 (833)
                      |++++.++..
T Consensus       112 N~~~c~c~~l  121 (170)
T 3g39_A          112 NPWDCACSDI  121 (170)
T ss_dssp             SCBCTTBGGG
T ss_pred             CCCCCCchhH
Confidence            9999988744

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=1.8e-13  Score=130.36  Aligned_cols=130  Identities=20%  Similarity=0.238  Sum_probs=105.3

Q ss_pred             CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006          484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD  563 (833)
Q Consensus       484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  563 (833)
                      +++|++|++++|.++. ++......++|++|++++|.+++.  ..+..+++|++|++++|++++..+..|..+++|++|+
T Consensus        18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            5788999999999885 454333344899999999999875  5788899999999999999976666668899999999


Q ss_pred             cCCCccCCCCCc--chhhcCCccceEEecCCccccccccc----ccCCCCCCEEeccCCcCc
Q 048006          564 LGKNALYGEIPT--WMGESLSNLIVLSLKSNKFHGKIPFQ----LCQLAFLQVLDLSLNNIS  619 (833)
Q Consensus       564 L~~n~l~~~~p~--~~~~~l~~L~~L~L~~N~l~~~~~~~----l~~l~~L~~L~Ls~N~l~  619 (833)
                      +++|++. .+|.  .+. .+++|++|++++|+++ .+|..    +..+++|+.||+++|.+.
T Consensus        95 L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999986 6776  444 6889999999999998 45553    788999999999998875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=1.4e-15  Score=148.17  Aligned_cols=133  Identities=23%  Similarity=0.260  Sum_probs=82.2

Q ss_pred             cccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccccc
Q 048006          552 SFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTA  631 (833)
Q Consensus       552 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  631 (833)
                      .+..+++|++|++++|++. .+| .+. .+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            5555666666666666665 355 333 4566666666666665 445555555666666666666654 22 3444443


Q ss_pred             ccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCc-hhhhcccCCcEEECCCccccccCCcc-----
Q 048006          632 MTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP-EEIMDLVGLVALNLSKNHLTGQISPK-----  705 (833)
Q Consensus       632 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~-----  705 (833)
                      |                                +.|++++|++++..+ ..+..+++|++|++++|.+++.+|..     
T Consensus       117 L--------------------------------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  164 (198)
T 1ds9_A          117 L--------------------------------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE  164 (198)
T ss_dssp             S--------------------------------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred             C--------------------------------CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence            3                                677777777764322 46777888888888888887665543     


Q ss_pred             -----cCCCCCCCEEeCCCCcCcc
Q 048006          706 -----IGQLKSLDFLDLSRNQLVG  724 (833)
Q Consensus       706 -----l~~l~~L~~L~Ls~N~l~~  724 (833)
                           +..+++|+.||  +|.++.
T Consensus       165 ~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          165 YRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             HHHHHHHhCCCcEEEC--CcccCH
Confidence                 67778888876  666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=6.1e-13  Score=125.93  Aligned_cols=90  Identities=26%  Similarity=0.272  Sum_probs=79.5

Q ss_pred             ccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006          664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY  743 (833)
Q Consensus       664 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  743 (833)
                      |+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++
T Consensus        35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            48899999999888888899999999999999999977666789999999999999999977777799999999999999


Q ss_pred             CcCccCCCCc
Q 048006          744 NNLSGKIPTV  753 (833)
Q Consensus       744 N~l~g~ip~~  753 (833)
                      |++.+.++..
T Consensus       115 N~~~c~~~~~  124 (174)
T 2r9u_A          115 NPWDCECRDI  124 (174)
T ss_dssp             SCBCTTBGGG
T ss_pred             CCcccccccH
Confidence            9999877643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=4.1e-13  Score=126.74  Aligned_cols=107  Identities=25%  Similarity=0.287  Sum_probs=96.6

Q ss_pred             cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006          665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN  744 (833)
Q Consensus       665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  744 (833)
                      +.+++++|+++ .+|..+.  ++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            78999999998 5776653  88999999999999998999999999999999999999888888999999999999999


Q ss_pred             cCccCCCC-ccccCccccccccCCCCCCCCC
Q 048006          745 NLSGKIPT-VTQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       745 ~l~g~ip~-~~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      +|++..|. ...+..+..+.+.+||+.|+|+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            99987775 4567788889999999999885

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.41  E-value=5.2e-12  Score=137.18  Aligned_cols=43  Identities=14%  Similarity=0.101  Sum_probs=27.0

Q ss_pred             cccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCC
Q 048006          254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNN  297 (833)
Q Consensus       254 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  297 (833)
                      ....+|.++++|+.+.+..+ ++.+...+|.++++|+.+++..+
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~  104 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS  104 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC
Confidence            34456777777777777543 55455556777777777776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.41  E-value=9.3e-12  Score=135.21  Aligned_cols=81  Identities=12%  Similarity=0.074  Sum_probs=59.6

Q ss_pred             cCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 048006          661 LGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMD  740 (833)
Q Consensus       661 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  740 (833)
                      +.+|+.+.+..+ ++..-...|.++++|+.+++..+ ++.....+|.++++|+.+++..+ ++.....+|.++++|+.++
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence            344577777654 55444567888888888888654 66566678888888998888776 6666677888888898888


Q ss_pred             CcCC
Q 048006          741 LSYN  744 (833)
Q Consensus       741 ls~N  744 (833)
                      +..+
T Consensus       373 lp~~  376 (394)
T 4fs7_A          373 LPKR  376 (394)
T ss_dssp             EEGG
T ss_pred             ECCC
Confidence            8644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=8.4e-13  Score=124.97  Aligned_cols=107  Identities=23%  Similarity=0.249  Sum_probs=95.9

Q ss_pred             cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006          665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN  744 (833)
Q Consensus       665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  744 (833)
                      +.+++++|+++ .+|..+.  ++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            78999999997 6777664  89999999999999998999999999999999999999877777899999999999999


Q ss_pred             cCccCCCC-ccccCccccccccCCCCCCCCC
Q 048006          745 NLSGKIPT-VTQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       745 ~l~g~ip~-~~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      +|++..+. ...+..+..+.+.+||+.|.|.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99987665 4667788889999999999875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=5.2e-14  Score=150.57  Aligned_cols=67  Identities=22%  Similarity=0.224  Sum_probs=34.8

Q ss_pred             ccEEEccCCcCCCC----CchhhhcccCCcEEECCCcccccc----CCcccCCCCCCCEEeCCCCcCcccCCccc
Q 048006          664 VKSLELSNNNLNGA----VPEEIMDLVGLVALNLSKNHLTGQ----ISPKIGQLKSLDFLDLSRNQLVGGIPSSL  730 (833)
Q Consensus       664 L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  730 (833)
                      |++|+|++|.+++.    ++..+...++|++|+|++|.|+..    ++..+...++|++|||++|.|+......+
T Consensus       185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            35555555555432    233444555666666666666532    22233344666666666666654433333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=1.1e-11  Score=132.30  Aligned_cols=105  Identities=23%  Similarity=0.283  Sum_probs=54.9

Q ss_pred             EEccCC-cCCCCCchhhhcccCCcEEECCC-ccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006          667 LELSNN-NLNGAVPEEIMDLVGLVALNLSK-NHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN  744 (833)
Q Consensus       667 L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  744 (833)
                      ++++++ +++ .+|. +..+++|++|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|.++++|++|||++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455554 555 3444 55555555555553 5555554455555555555555555555555555555555555555555


Q ss_pred             cCccCCCCccccCccccccccCCCCCCCC
Q 048006          745 NLSGKIPTVTQLQSFNDTVYAGNPELCGL  773 (833)
Q Consensus       745 ~l~g~ip~~~~~~~l~~~~~~gn~~lc~~  773 (833)
                      +|++.+|.......+..+.+.+|++.|+|
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLHCSC  119 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             ccceeCHHHcccCCceEEEeeCCCccCCC
Confidence            55544433222122444455555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=2e-11  Score=130.24  Aligned_cols=86  Identities=24%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             cEEEccC-CcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006          665 KSLELSN-NNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY  743 (833)
Q Consensus       665 ~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  743 (833)
                      +.|+|++ |+|++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+..++ |+.|++++
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence            6677764 777666666677777777777777777777777777777777777777777766555565555 77777777


Q ss_pred             CcCccCCC
Q 048006          744 NNLSGKIP  751 (833)
Q Consensus       744 N~l~g~ip  751 (833)
                      |++.+.+.
T Consensus       113 N~~~c~c~  120 (347)
T 2ifg_A          113 NPLHCSCA  120 (347)
T ss_dssp             SCCCCCGG
T ss_pred             CCccCCCc
Confidence            77776554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=3.3e-13  Score=144.31  Aligned_cols=111  Identities=13%  Similarity=0.110  Sum_probs=62.7

Q ss_pred             CCccceEEecCCcccc----cccccccCCCCCCEEeccCCcCcccC----CccccccccccccCCCCcccccceEEeecc
Q 048006          581 LSNLIVLSLKSNKFHG----KIPFQLCQLAFLQVLDLSLNNISGKI----PKCFNNFTAMTQERSSDPTIKDKLMLTWKG  652 (833)
Q Consensus       581 l~~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  652 (833)
                      .++|++|+|++|.++.    .++..+..+++|++|+|++|.+.+..    +..+..                        
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~------------------------  209 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR------------------------  209 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG------------------------
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc------------------------
Confidence            3556666666666653    23334456677777777777775422    122222                        


Q ss_pred             CcchhccccCcccEEEccCCcCCCC----CchhhhcccCCcEEECCCccccccCCcccCCC---C--CCCEEe--CCCCc
Q 048006          653 SEREYRSTLGLVKSLELSNNNLNGA----VPEEIMDLVGLVALNLSKNHLTGQISPKIGQL---K--SLDFLD--LSRNQ  721 (833)
Q Consensus       653 ~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~--~L~~L~--Ls~N~  721 (833)
                              .+.|+.|+|++|.+++.    ++..+...++|++|+|++|.|+......+..+   .  .|+.+.  +..|.
T Consensus       210 --------~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~  281 (372)
T 3un9_A          210 --------NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA  281 (372)
T ss_dssp             --------CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----
T ss_pred             --------CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence                    23457888888887643    33445567888899999998876544444332   1  155555  55555


Q ss_pred             Cc
Q 048006          722 LV  723 (833)
Q Consensus       722 l~  723 (833)
                      +.
T Consensus       282 ~~  283 (372)
T 3un9_A          282 VS  283 (372)
T ss_dssp             CH
T ss_pred             cC
Confidence            54

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.20  E-value=1e-09  Score=119.04  Aligned_cols=128  Identities=14%  Similarity=0.175  Sum_probs=69.8

Q ss_pred             cCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEe
Q 048006          483 SGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL  562 (833)
Q Consensus       483 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  562 (833)
                      .+..|+.+.+..+... ....+|.++++|+.+.+. +.++.....+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+
T Consensus       263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence            3566666666544332 444556666777777664 3444455556666777777776643 554555667777777777


Q ss_pred             ccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcC
Q 048006          563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNI  618 (833)
Q Consensus       563 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l  618 (833)
                      .+..+ ++ .+....|.++++|+.+++.++....   ..+....+|+.+.+..+.+
T Consensus       340 ~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          340 AIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            66543 44 5666556566677777766664331   2445556666666655543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.16  E-value=1.7e-09  Score=117.23  Aligned_cols=44  Identities=18%  Similarity=0.123  Sum_probs=28.8

Q ss_pred             cccccccCCC-CCcEEECcCCcccccccccccCCCCCcEEEccCCC
Q 048006          254 SIPESFQHMV-YLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNK  298 (833)
Q Consensus       254 ~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  298 (833)
                      ....+|.+++ .|+.+.+..+ ++.+...+|.++++|+.+.+..|.
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~   98 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNK   98 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGC
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCC
Confidence            3345666664 4777777653 555556677777778777776653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.91  E-value=1e-07  Score=102.75  Aligned_cols=106  Identities=14%  Similarity=0.183  Sum_probs=44.9

Q ss_pred             ccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCcc
Q 048006          505 WWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNL  584 (833)
Q Consensus       505 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  584 (833)
                      +..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++...+.++++|
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L  288 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccccc
Confidence            334444444444332 22233334444444554444433 33333444444455555444332 22 3333333344444


Q ss_pred             ceEEecCCcccccccccccCCCCCCEEecc
Q 048006          585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLS  614 (833)
Q Consensus       585 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls  614 (833)
                      +.+.+.++.++..-..+|.++.+|+.++|.
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcC
Confidence            444444444443333444444444444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.85  E-value=2.2e-07  Score=100.08  Aligned_cols=35  Identities=14%  Similarity=0.185  Sum_probs=19.7

Q ss_pred             ccccChhhhcCCCCCCEEECcCCccccccCCCccCC
Q 048006          329 TGVISESFFSNISNLKELHLANNPLVLKLSHDWVPP  364 (833)
Q Consensus       329 ~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  364 (833)
                      +..|+..+|.++.+|+.+.+..+ ++......|...
T Consensus        57 vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c   91 (379)
T 4h09_A           57 ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT   91 (379)
T ss_dssp             EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC
T ss_pred             ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC
Confidence            34555666777777777777543 444444444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=6.6e-10  Score=117.52  Aligned_cols=163  Identities=19%  Similarity=0.214  Sum_probs=81.7

Q ss_pred             cccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccccccccc--CCCCCCEEeccC--CcCcccCCcccc
Q 048006          552 SFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLC--QLAFLQVLDLSL--NNISGKIPKCFN  627 (833)
Q Consensus       552 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~Ls~--N~l~~~~p~~~~  627 (833)
                      .+..+|+|+.|++++|.-. .++. +  ..++|+.|++..|.+.......++  .+++|+.|+|+.  |...+..  .+.
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~  240 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMN  240 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHH
Confidence            3455667777777666311 2333 1  256777777777766543333333  567777777753  2211110  010


Q ss_pred             ccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhh---cccCCcEEECCCcccccc---
Q 048006          628 NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIM---DLVGLVALNLSKNHLTGQ---  701 (833)
Q Consensus       628 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~---  701 (833)
                      .+..+                       .....+++|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+++.   
T Consensus       241 ~l~~~-----------------------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~  297 (362)
T 2ra8_A          241 VFRPL-----------------------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR  297 (362)
T ss_dssp             GTGGG-----------------------SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH
T ss_pred             HHHHH-----------------------HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH
Confidence            00000                       0001245667777777776544333333   356677777777766643   


Q ss_pred             -CCcccCCCCCCCEEeCCCCcCcccCCccccC-CCCCCEEECcCCc
Q 048006          702 -ISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQ-LSGLSVMDLSYNN  745 (833)
Q Consensus       702 -~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~ls~N~  745 (833)
                       ++..+..+++|+.|+|++|.++...-..+.. +  ...+++++++
T Consensus       298 ~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          298 LLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence             2223344566777777766665433222322 1  2445565554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.63  E-value=5.5e-08  Score=102.80  Aligned_cols=158  Identities=16%  Similarity=0.150  Sum_probs=87.7

Q ss_pred             cccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHh--hcCCccccCCccEEEcc---ccccc
Q 048006          256 PESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQ--NLSSGCLENSLKSLYLE---NSLTG  330 (833)
Q Consensus       256 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~~~~~~~L~~L~L~---~~~~~  330 (833)
                      ...+..+++|+.|++++|.-. .++. +. +++|++|++..+.+.......+.  .++      +|+.|+|+   ++..+
T Consensus       165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp------~L~~L~L~~~~~~~~~  235 (362)
T 2ra8_A          165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLP------NLEKLVLYVGVEDYGF  235 (362)
T ss_dssp             HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCT------TCCEEEEECBCGGGTC
T ss_pred             HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCC------CCcEEEEecccccccc
Confidence            345567788888888877311 1233 33 77888888888887665544454  456      78887772   12111


Q ss_pred             c-----cChhhh--cCCCCCCEEECcCCccccccCCCc---cCCccccEEEccCccCCCC----CChhhcccccccEEee
Q 048006          331 V-----ISESFF--SNISNLKELHLANNPLVLKLSHDW---VPPFQLIIISLSSCKIGPH----FPKWLQTQNQIELLDI  396 (833)
Q Consensus       331 ~-----i~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L  396 (833)
                      .     +.. .+  ..+++|++|++.+|.+.......+   ..+++|++|+|+.|.++..    ++..+..+++|+.|++
T Consensus       236 ~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L  314 (362)
T 2ra8_A          236 DGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM  314 (362)
T ss_dssp             CSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred             chhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence            1     111 12  246788888888777764322222   1345666666666666542    2233345566666666


Q ss_pred             cCCccccccchhHHhhcccccEEEccccc
Q 048006          397 SNTGISDTIPDWFWNLSNKFSFLDLASNQ  425 (833)
Q Consensus       397 s~n~i~~~~~~~~~~~~~~L~~L~L~~n~  425 (833)
                      ++|.|++..-..+....  ...++++.++
T Consensus       315 ~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          315 KYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            66666544444443321  2334555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=3.1e-08  Score=94.33  Aligned_cols=122  Identities=19%  Similarity=0.227  Sum_probs=70.5

Q ss_pred             ecCccccCCCCCCEEeCCCC-CCCCC---CccccccCCCCCCEEEccCCCCCCC----CCcccCCccccceecccCccCC
Q 048006           78 TISPALLKLHDLRHLNLSFN-DFSGS---PIPEFIGSLSKLRYLDLFGTVFAGP----IPPQLGNLSRLQHLDLGSNYLF  149 (833)
Q Consensus        78 ~~~~~l~~l~~L~~L~Ls~n-~~~~~---~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~~~  149 (833)
                      .+...+...+.|++|+|++| .+...   .+...+...++|++|+|++|.+...    +...+...+.|++|+|++|.+.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34456777888888998888 77642   1344566678888888888887542    2333445566777777777664


Q ss_pred             CCCC---cccccCCCCCcEEec--CCCCCCCC--chhHHhhcCCCCCCEEEccCCCC
Q 048006          150 STGN---LDWLSHLSYLRYLNL--DESNLANS--SDWFQVIGKLHSLKTLSLHSCYL  199 (833)
Q Consensus       150 ~~~~---~~~l~~l~~L~~L~L--s~n~~~~~--~~~~~~l~~l~~L~~L~Ls~n~l  199 (833)
                      ..+.   ...+...++|++|++  ++|.+...  ..+...+...++|++|+|++|.+
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            2111   123444555666666  55555432  12333444445555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=6.6e-08  Score=92.08  Aligned_cols=84  Identities=19%  Similarity=0.235  Sum_probs=47.7

Q ss_pred             ccEEEccCCcCCCC----CchhhhcccCCcEEECCCcccccc----CCcccCCCCCCCEEeC--CCCcCccc----CCcc
Q 048006          664 VKSLELSNNNLNGA----VPEEIMDLVGLVALNLSKNHLTGQ----ISPKIGQLKSLDFLDL--SRNQLVGG----IPSS  729 (833)
Q Consensus       664 L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----~p~~  729 (833)
                      |++|+|++|++...    +...+...+.|++|+|++|.|+..    +...+...++|++|+|  ++|.+...    +...
T Consensus        67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~  146 (185)
T 1io0_A           67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM  146 (185)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred             cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence            35555555555432    223344455666666666666532    2344555566777777  66776643    2334


Q ss_pred             ccCCCCCCEEECcCCcCc
Q 048006          730 LSQLSGLSVMDLSYNNLS  747 (833)
Q Consensus       730 l~~l~~L~~L~ls~N~l~  747 (833)
                      +...++|++|++++|++.
T Consensus       147 L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          147 LEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCcCEEeccCCCCC
Confidence            444567777777777664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=5.5e-07  Score=89.94  Aligned_cols=78  Identities=28%  Similarity=0.321  Sum_probs=42.0

Q ss_pred             cCcccEEEccCCcCCC--CCchhhhcccCCcEEECCCccccccCCcccCCCC--CCCEEeCCCCcCcccCCc-------c
Q 048006          661 LGLVKSLELSNNNLNG--AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLK--SLDFLDLSRNQLVGGIPS-------S  729 (833)
Q Consensus       661 ~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~-------~  729 (833)
                      ++.|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            4445666666666665  3345555666666666666666643  2233333  566666666666554442       2


Q ss_pred             ccCCCCCCEEE
Q 048006          730 LSQLSGLSVMD  740 (833)
Q Consensus       730 l~~l~~L~~L~  740 (833)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            34455555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=1.7e-07  Score=93.70  Aligned_cols=39  Identities=23%  Similarity=0.385  Sum_probs=18.5

Q ss_pred             CCccceEEecCCcccc--cccccccCCCCCCEEeccCCcCc
Q 048006          581 LSNLIVLSLKSNKFHG--KIPFQLCQLAFLQVLDLSLNNIS  619 (833)
Q Consensus       581 l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~  619 (833)
                      +++|++|+|++|++++  .+|..+..+++|+.|+|++|+|+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            4455555555555544  22333344445555555555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.87  E-value=3.3e-06  Score=77.91  Aligned_cols=35  Identities=6%  Similarity=0.016  Sum_probs=19.1

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCC
Q 048006           88 DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTV  123 (833)
Q Consensus        88 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~  123 (833)
                      .|++||++++.++.. --..+..+++|++|+|++|.
T Consensus        62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCC
Confidence            466666666665543 22334555666666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.57  E-value=6.3e-05  Score=69.34  Aligned_cols=34  Identities=3%  Similarity=-0.079  Sum_probs=15.9

Q ss_pred             CCcEEECcCCcccccccccccCCCCCcEEEccCC
Q 048006          264 YLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNN  297 (833)
Q Consensus       264 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  297 (833)
                      .|++||+++|.++...-..+..+++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3444444444444333333444555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.30  E-value=0.00033  Score=61.58  Aligned_cols=95  Identities=16%  Similarity=0.099  Sum_probs=64.9

Q ss_pred             cEEECCCcccc-ccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCC
Q 048006          689 VALNLSKNHLT-GQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGN  767 (833)
Q Consensus       689 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn  767 (833)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|++|+|++|++.+..-......++.....   
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~---   85 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPE---   85 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSC---
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcc---
Confidence            47899999997 46676554  5799999999999988788899999999999999999876543222222211100   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCc
Q 048006          768 PELCGLPLPNKCRDEESAAGPGIT  791 (833)
Q Consensus       768 ~~lc~~~~~~~c~~~~~~~~~~~~  791 (833)
                      ...   .....|..|...++....
T Consensus        86 ~~~---~~~~~C~~P~~l~g~~l~  106 (130)
T 3rfe_A           86 RAP---YRDLRCVAPPALRGRLLP  106 (130)
T ss_dssp             SGG---GTTCBCCBSTTTTTCBGG
T ss_pred             ccc---ccCcEeCcChHHcCCCcc
Confidence            000   113468887777775554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.16  E-value=0.0007  Score=59.47  Aligned_cols=57  Identities=21%  Similarity=0.247  Sum_probs=44.6

Q ss_pred             cEEEccCCcCC-CCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006          665 KSLELSNNNLN-GAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV  723 (833)
Q Consensus       665 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  723 (833)
                      ..++.+++.++ ..+|..+.  .+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            57888888886 35564332  46889999999998777777888899999999999875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.07  E-value=0.00021  Score=67.18  Aligned_cols=83  Identities=17%  Similarity=0.224  Sum_probs=48.8

Q ss_pred             ccEEEccCCcCCC----CCchhhhcccCCcEEECCCcccccc----CCcccCCCCCCCEEeCCCCc---Ccc----cCCc
Q 048006          664 VKSLELSNNNLNG----AVPEEIMDLVGLVALNLSKNHLTGQ----ISPKIGQLKSLDFLDLSRNQ---LVG----GIPS  728 (833)
Q Consensus       664 L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~---l~~----~~p~  728 (833)
                      |+.|+|++|++.+    .+.+.+..-+.|++|+|++|.|+..    +-+.+..-+.|++|+|++|.   +..    .+.+
T Consensus        72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~  151 (197)
T 1pgv_A           72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM  151 (197)
T ss_dssp             CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH
T ss_pred             cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH
Confidence            3566666666643    2334455566777777777777633    22344555678888887653   232    1233


Q ss_pred             cccCCCCCCEEECcCCcC
Q 048006          729 SLSQLSGLSVMDLSYNNL  746 (833)
Q Consensus       729 ~l~~l~~L~~L~ls~N~l  746 (833)
                      .+..-+.|+.|++++|.+
T Consensus       152 aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          152 AIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHCSSCCEEECCCCCH
T ss_pred             HHHhCCCcCeEeccCCCc
Confidence            455556788888877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.70  E-value=0.0019  Score=60.71  Aligned_cols=18  Identities=22%  Similarity=0.272  Sum_probs=10.5

Q ss_pred             cCCCCCCEEECcCCcccc
Q 048006          338 SNISNLKELHLANNPLVL  355 (833)
Q Consensus       338 ~~l~~L~~L~L~~n~l~~  355 (833)
                      ..-+.|++|+|++|.|..
T Consensus        95 ~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           95 ETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHCSSCCEEECCSSBCCH
T ss_pred             hcCCccCeEecCCCcCCH
Confidence            344566666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	833
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-08
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.6 bits (210), Expect = 1e-18
 Identities = 66/276 (23%), Positives = 103/276 (37%), Gaps = 17/276 (6%)

Query: 518 NNSFSGRIPDSMGFLQNIQTLSLHNNRLTG--ELSSSFRNCSQLRLLDLGKNALYGEIPT 575
           N ++ G + D+      +  L L    L     + SS  N   L  L +G          
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 576 WMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 635
                L+ L  L +      G IP  L Q+  L  LD S N +SG +P   ++   +   
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDL---------- 685
                 I   +  ++    + + S       L          +    +DL          
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214

Query: 686 -----VGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMD 740
                           +       K+G  K+L+ LDL  N++ G +P  L+QL  L  ++
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 741 LSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLP 776
           +S+NNL G+IP    LQ F+ + YA N  LCG PLP
Sbjct: 275 VSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.5 bits (202), Expect = 1e-17
 Identities = 69/313 (22%), Positives = 107/313 (34%), Gaps = 21/313 (6%)

Query: 11  CIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCC--KWTGLRCSNKTN--HVILLDLQ 66
           C  ++++ALL  K  L +    LSSW P     DCC   W G+ C   T    V  LDL 
Sbjct: 3   CNPQDKQALLQIKKDLGN-PTTLSSWLPTT---DCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 67  PIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAG 126
                + P    I  +L  L  L  L +   +    PIP  I  L++L YL +  T  +G
Sbjct: 59  ---GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

Query: 127 PIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKL 186
            IP  L  +  L  LD   N   S      +S L  L  +  D + ++ +          
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSY----- 169

Query: 187 HSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDL 246
                  L +        L+     +  +L    +  +         +   S        
Sbjct: 170 --GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 247 GFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEI 306
                             L  L L  N + G +P+    +  L +LN+S N L G++ + 
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 307 --IQNLSSGCLEN 317
             +Q        N
Sbjct: 288 GNLQRFDVSAYAN 300

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.5 bits (189), Expect = 6e-16
 Identities = 57/265 (21%), Positives = 99/265 (37%), Gaps = 13/265 (4%)

Query: 465 LNLSKNRFSGSISFLCSISG-SKLTYVDLSSNL-LSGKLPDCWWTFDSLVILNLENNSFS 522
           L+LS            S++    L ++ +     L G +P        L  L + + + S
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 523 GRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLS 582
           G IPD +  ++ + TL    N L+G L  S  +   L  +    N + G IP   G    
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 583 NLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 642
               +++  N+  GKIP     L    V                ++        + +   
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 643 KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQI 702
            D   +    +              +L NN + G +P+ +  L  L +LN+S N+L G+I
Sbjct: 235 FDLGKVGLSKNLNGL----------DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 703 SPKIGQLKSLDFLDLSRNQLVGGIP 727
            P+ G L+  D    + N+ + G P
Sbjct: 285 -PQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 45/264 (17%), Positives = 90/264 (34%), Gaps = 9/264 (3%)

Query: 284 GNMCSLITLNLSNNKLSG--QLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNIS 341
                +  L+LS   L     +   + NL           +   N+L G I  +    ++
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY----IGGINNLVGPIPPAIA-KLT 101

Query: 342 NLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGI 401
            L  L++ +  +   +         L+ +  S   +    P  + +   +  +      I
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 402 SDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSN 461
           S  IPD + + S  F+ + ++ N++ GK+P   +    +   +  +    +  +      
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 462 SSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSF 521
           ++                       L  +DL +N + G LP        L  LN+  N+ 
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 522 SGRIPDSMGFLQNIQTLSLHNNRL 545
            G IP   G LQ     +  NN+ 
Sbjct: 281 CGEIPQG-GNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 6e-10
 Identities = 57/288 (19%), Positives = 96/288 (33%), Gaps = 30/288 (10%)

Query: 319 LKSLYLE-NSLTGVIS-ESFFSNISNLKELHLANNP-LVLKLSHDWVPPFQLIIISLSSC 375
           + +L L   +L       S  +N+  L  L++     LV  +        QL  + ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 376 KIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSS 435
            +    P +L     +  LD S   +S T+P    +L N         N+I G +P+   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRISGAIPDSYG 170

Query: 436 RFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSN 495
            F      + IS N   G IPP  +N +   +  +R              K T     + 
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 496 LLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRN 555
                         +L  L+L NN   G +P  +  L+ + +L++  N L GE+      
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---- 286

Query: 556 CSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLC 603
                                 G +L    V +  +NK     P   C
Sbjct: 287 ----------------------GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 9e-08
 Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 51/236 (21%)

Query: 443 GIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSI-----SGSKLTYVDLSSNLL 497
            +D+S  +     P   S ++   L+     G  + +  I       ++L Y+ ++   +
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 498 SGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCS 557
           SG +PD      +LV L+   N+ SG +P S+  L N+  ++   NR++G +  S+ + S
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 558 QLRLLDLGKN----------------------------------------------ALYG 571
           +L                                                          
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 572 EIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
                      NL  L L++N+ +G +P  L QL FL  L++S NN+ G+IP+  N
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 7e-06
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 90  RHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSN 146
             L+L  N   G+ +P+ +  L  L  L++      G IP Q GNL R       +N
Sbjct: 247 NGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.0 bits (201), Expect = 2e-17
 Identities = 57/314 (18%), Positives = 104/314 (33%), Gaps = 45/314 (14%)

Query: 46  CKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIP 105
           C    ++CS+     +  DL P                    D   L+L  N  +     
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPP--------------------DTALLDLQNNKITEIK-D 48

Query: 106 EFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRY 165
               +L  L  L L     +   P     L +L+ L L  N       L  L        
Sbjct: 49  GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN------QLKELPEKMPKTL 102

Query: 166 LNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNN 225
             L       +     V   L+ +  + L +  L     +          L  + ++D N
Sbjct: 103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-KSSGIENGAFQGMKKLSYIRIADTN 161

Query: 226 LTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGN 285
           +T+      P+++     + L  N++      S + +  L  L LSFN +         N
Sbjct: 162 ITTIPQGLPPSLT----ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 286 MCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLE-NSLTGVISESF-----FSN 339
              L  L+L+NNKL      +  +         ++ +YL  N+++ + S  F      + 
Sbjct: 218 TPHLRELHLNNNKLVKVPGGLADH-------KYIQVVYLHNNNISAIGSNDFCPPGYNTK 270

Query: 340 ISNLKELHLANNPL 353
            ++   + L +NP+
Sbjct: 271 KASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 55/239 (23%), Positives = 91/239 (38%), Gaps = 14/239 (5%)

Query: 510 SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNAL 569
              +L+L+NN  +         L+N+ TL L NN+++     +F    +L  L L KN L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 570 YGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNF 629
             E+P  M ++L  L V   +  K    + F       +  L  +    SG     F   
Sbjct: 92  -KELPEKMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLV 689
             ++  R +D  I               +     +  L L  N +       +  L  L 
Sbjct: 150 KKLSYIRIADTNITT-----------IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 690 ALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG 748
            L LS N ++   +  +     L  L L+ N+LV  +P  L+    + V+ L  NN+S 
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 54/353 (15%), Positives = 105/353 (29%), Gaps = 61/353 (17%)

Query: 215 SLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNE 274
            L  +  SD  L         ++      +DL  N++       F+++  L  L L  N+
Sbjct: 11  HLRVVQCSDLGLEK----VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 275 LEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISE 334
           +    P  F  +  L  L LS N+L          L     +   +    EN +T V   
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLK--------ELPEKMPKTLQELRVHENEITKVRKS 118

Query: 335 SFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELL 394
            F                       + +    ++ +  +  K         Q   ++  +
Sbjct: 119 VF-----------------------NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155

Query: 395 DISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGL 454
            I++T I+        +L+     L L  N+I                 + +S N    +
Sbjct: 156 RIADTNITTIPQGLPPSLTE----LHLDGNKITKVDAASLKGLNNLAK-LGLSFNSISAV 210

Query: 455 IPPLPSNSSFLNLSKNRFSGSISFLCSISG-SKLTYVDLSSNLLSGKLPDCWWTFDSLVI 513
                +N+  L       +  +     ++    +  V L +N +S               
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS--------------- 255

Query: 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGE--LSSSFRNCSQLRLLDL 564
             + +N F    P       +   +SL +N +       S+FR       + L
Sbjct: 256 -AIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.7 bits (138), Expect = 2e-09
 Identities = 42/245 (17%), Positives = 76/245 (31%), Gaps = 37/245 (15%)

Query: 530 GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSL 589
               +   L L NN++T      F+N   L  L L  N +    P      L  L  L L
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYL 86

Query: 590 KSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLT 649
             N+           L  L+V +  +  +   +    N    +                 
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV----------------- 129

Query: 650 WKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQL 709
                            L  +    +G        +  L  + ++  ++T   +   G  
Sbjct: 130 ----------------ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLP 170

Query: 710 KSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPE 769
            SL  L L  N++     +SL  L+ L+ + LS+N++S               ++  N +
Sbjct: 171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230

Query: 770 LCGLP 774
           L  +P
Sbjct: 231 LVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 11/154 (7%)

Query: 77  GTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLS 136
           G  + A   +  L ++ ++  + +  P     G    L  L L G          L  L+
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSLTELHLDGNKITKVDAASLKGLN 195

Query: 137 RLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHS 196
            L  L   S    S  +   L++  +LR L+L+ + L               ++ + LH+
Sbjct: 196 NLAKLG-LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL---ADHKYIQVVYLHN 251

Query: 197 CYL---PPVIPLSLNHLNSSTSLETLVLSDNNLT 227
             +            +     S   + L  N + 
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.5 bits (192), Expect = 5e-16
 Identities = 66/383 (17%), Positives = 131/383 (34%), Gaps = 35/383 (9%)

Query: 219 LVLSDNNLTSSIYPW-LPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG 277
            VL   N+T ++    L  ++++     LG   + G      +++  L  +  S N+L  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQAD-RLGIKSIDG-----VEYLNNLTQINFSNNQLTD 80

Query: 278 GIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFF 337
             P    N+  L+ + ++NN+++           +G    + +   ++            
Sbjct: 81  ITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138

Query: 338 SNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKI-------GPHFPKWLQTQNQ 390
            + + + ++   +    L+          L  ++  +                 L     
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198

Query: 391 IELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNH 450
           +E L  +N  ISD  P            L L  NQ+K  +  L+S   T+   +D+++N 
Sbjct: 199 LESLIATNNQISDITPLGILT---NLDELSLNGNQLKD-IGTLASL--TNLTDLDLANNQ 252

Query: 451 FEGLIP-PLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFD 509
              L P    +  + L L  N+ S         + + L   +                  
Sbjct: 253 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED-----ISPISNLK 307

Query: 510 SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNAL 569
           +L  L L  N+ S   P  +  L  +Q L   NN+++    SS  N + +  L  G N +
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 570 YGEIPTWMGESLSNLIVLSLKSN 592
               P     +L+ +  L L   
Sbjct: 364 SDLTPL---ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.1 bits (178), Expect = 3e-14
 Identities = 66/436 (15%), Positives = 140/436 (32%), Gaps = 72/436 (16%)

Query: 285 NMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLK 344
            +   +   L    ++  +S+   +L      + + +L  +    G+ S      ++NL 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQ--TDL------DQVTTLQADRL--GIKSIDGVEYLNNLT 69

Query: 345 ELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDT 404
           +++ +NN L        + P + +   L    +  +    +     +  L       +  
Sbjct: 70  QINFSNNQL------TDITPLKNLT-KLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 405 IPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSF 464
                       + L+L+SN I            +    +   S   +       +N + 
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTIS------DISALSGLTSLQQLSFGNQVTDLKPLANLTT 176

Query: 465 LNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR 524
           L       +           + L  +  ++N +S   P    T  +L  L+L  N     
Sbjct: 177 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD- 233

Query: 525 IPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNL 584
              ++  L N+  L L NN+++    +     ++L  L LG N +    P     +L+NL
Sbjct: 234 -IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 290

Query: 585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644
                + N+   +    +  L  L  L L  NNIS   P   ++ T +            
Sbjct: 291 -----ELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKL------------ 331

Query: 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISP 704
                               + L  +NN ++      + +L  +  L+   N ++     
Sbjct: 332 --------------------QRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP- 368

Query: 705 KIGQLKSLDFLDLSRN 720
            +  L  +  L L+  
Sbjct: 369 -LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.1 bits (165), Expect = 1e-12
 Identities = 67/382 (17%), Positives = 125/382 (32%), Gaps = 38/382 (9%)

Query: 255 IPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGC 314
           I + F      E ++    +          ++  + TL      +     + ++ L+   
Sbjct: 12  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLN--- 66

Query: 315 LENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS 373
              +L  +    N LT +       N++ L ++ + NN +        +     + +  +
Sbjct: 67  ---NLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 374 SCKIGPHFPKWLQTQ------NQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIK 427
                                N I  +   +   S     +   +++     +L + +  
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 428 GKLPNLSSRFG-----TSNPGIDISSNHFEGLIPP-LPSNSSFLNLSKNRFSGSISFLCS 481
               N  S        T+   +  ++N    + P  + +N   L+L+ N+     +    
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA-- 238

Query: 482 ISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLH 541
            S + LT +DL++N +S   P    T   L  L L  N  S   P  +  L  +  L L+
Sbjct: 239 -SLTNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQISNISP--LAGLTALTNLELN 293

Query: 542 NNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ 601
            N+L     S   N   L  L L  N +    P     SL+ L  L   +NK        
Sbjct: 294 ENQLEDI--SPISNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFANNKVSD--VSS 346

Query: 602 LCQLAFLQVLDLSLNNISGKIP 623
           L  L  +  L    N IS   P
Sbjct: 347 LANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.2 bits (160), Expect = 5e-12
 Identities = 71/375 (18%), Positives = 121/375 (32%), Gaps = 62/375 (16%)

Query: 389 NQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKG-----KLPNLSSRFGTSNPG 443
           +Q+  L     GI     D    L+N  + ++ ++NQ+        L  L      +N  
Sbjct: 44  DQVTTLQADRLGIKSI--DGVEYLNN-LTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPD 503
            DI+       +  L   ++ +       + +      +S + ++ +   S L S +   
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 504 CWWTFDSLVILNLENNSFSGRIPDSM-------GFLQNIQTLSLHNNRLTGELSSSFRNC 556
                  L  L          I  +          L N+++L   NN+++    +     
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGIL 218

Query: 557 SQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLN 616
           + L  L L  N L   I T    SL+NL  L L +N+     P     L  L  L L  N
Sbjct: 219 TNLDELSLNGNQLKD-IGTL--ASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGAN 273

Query: 617 NISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG 676
            IS   P                                      GL     L  N    
Sbjct: 274 QISNISPLA------------------------------------GLTALTNLELNENQL 297

Query: 677 AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGL 736
                I +L  L  L L  N+++      +  L  L  L  + N++     SSL+ L+ +
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 737 SVMDLSYNNLSGKIP 751
           + +   +N +S   P
Sbjct: 354 NWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 3e-10
 Identities = 59/395 (14%), Positives = 124/395 (31%), Gaps = 42/395 (10%)

Query: 86  LHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGS 145
           L +     L   + + +     +  ++ L+   L      G     +  L+ L  ++  +
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSN 75

Query: 146 NYLFSTGNLDWLSHLSYLRY----LNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPP 201
           N L     L  L+ L  +      +         ++     +          L +     
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 202 VIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQH 261
            + LS N ++  ++L  L         +    L  ++++     L  +  + S       
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 262 MVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKS 321
           +  LE L  + N++    P     + +L  L+L+ N+L       I  L+S  L N    
Sbjct: 196 LTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD-----IGTLAS--LTNLTDL 246

Query: 322 LYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHF 381
               N ++ +      S ++ L EL L  N +        +     +       +     
Sbjct: 247 DLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNL----ELNENQLED 299

Query: 382 PKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKG-----KLPNLSSR 436
              +     +  L +    ISD  P    +L+     L  A+N++        L N++  
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTK-LQRLFFANNKVSDVSSLANLTNINW- 355

Query: 437 FGTSNPGIDISSNHFEGLIPPLP-SNSSFLNLSKN 470
                  +    N    L P    +  + L L+  
Sbjct: 356 -------LSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 7e-07
 Identities = 60/346 (17%), Positives = 108/346 (31%), Gaps = 32/346 (9%)

Query: 85  KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLG 144
            L++L  +N S N  +       + +L+KL  + +     A   P           L   
Sbjct: 64  YLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 145 SNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLH------SLKTLSLHSCY 198
                         +   L    + + +  +     Q +   +       L  L+     
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 199 LPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPES 258
                 +S   + +  +    +++ NN  S I P    I +    + L  NQL+     +
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGT 236

Query: 259 FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENS 318
              +  L  L L+ N++    P     +  L  L L  N++S              L   
Sbjct: 237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----------LAGL 284

Query: 319 LKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIG 378
                LE +   +   S  SN+ NL  L L  N +        +   +L  +  ++ K+ 
Sbjct: 285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT--KLQRLFFANNKVS 342

Query: 379 PHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASN 424
                 L     I  L   +  ISD  P    NL+   + L L   
Sbjct: 343 --DVSSLANLTNINWLSAGHNQISDLTP--LANLTR-ITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 54/305 (17%), Positives = 84/305 (27%), Gaps = 37/305 (12%)

Query: 444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPD 503
                   + +   +P+ S  + L  NR S   +       +       S+ L       
Sbjct: 16  TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 504 CWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD 563
                    +   +N       P +   L  + TL L    L       FR  + L+ L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP 623
           L  NAL           L NL  L L  N+           L  L  L L  N ++   P
Sbjct: 136 LQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 624 KCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIM 683
             F +   +                                       NNL+    E + 
Sbjct: 195 HAFRDLGRLMTLYLF--------------------------------ANNLSALPTEALA 222

Query: 684 DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY 743
            L  L  L L+ N               L     S +++   +P  L+   G  +  L+ 
Sbjct: 223 PLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA---GRDLKRLAA 278

Query: 744 NNLSG 748
           N+L G
Sbjct: 279 NDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 45/251 (17%), Positives = 81/251 (32%), Gaps = 15/251 (5%)

Query: 87  HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSN 146
              + + L  N  S  P      +   L  L L   V A         L+ L+ LDL  N
Sbjct: 32  AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 147 YLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLS 206
               + +      L  L  L+L             +   L +L+ L L    L  +    
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHL--DRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-- 146

Query: 207 LNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLE 266
            +      +L  L L  N ++S        + S+   + L  N++    P +F+ +  L 
Sbjct: 147 -DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-DRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 267 HLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-E 325
            L L  N L     +    + +L  L L++N           +  +  L   L+      
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-------DCRARPLWAWLQKFRGSS 257

Query: 326 NSLTGVISESF 336
           + +   + +  
Sbjct: 258 SEVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 2e-10
 Identities = 35/262 (13%), Positives = 73/262 (27%), Gaps = 9/262 (3%)

Query: 213 STSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSF 272
             + + + L  N ++           ++ I         +          +  +      
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 273 NELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVI 332
            +L    P  F  +  L TL+L                       +L+ LYL+++    +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCG------LQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 333 SESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIE 392
            +  F ++ NL  L L  N +       +     L  + L   ++    P   +   ++ 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 393 LLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFE 452
            L +    +S  +P           +L L  N                      SS+   
Sbjct: 205 TLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRARP--LWAWLQKFRGSSSEVP 261

Query: 453 GLIPPLPSNSSFLNLSKNRFSG 474
             +P   +      L+ N   G
Sbjct: 262 CSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 55/309 (17%), Positives = 93/309 (30%), Gaps = 43/309 (13%)

Query: 394 LDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFG--TSNPGIDISSNHF 451
                 G+   +P     +      + L  N+I              T            
Sbjct: 16  TSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 452 EGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSL 511
           +       +    L+LS N    S+         +L  + L    L    P  +    +L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 512 VILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYG 571
             L L++N+      D+   L N+  L LH NR++     +FR    L  L L +N +  
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 572 EIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTA 631
             P      L  L+ L L +N         L  L  LQ L L+ N               
Sbjct: 192 VHPHAF-RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC----------- 239

Query: 632 MTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVAL 691
                      + + +  W             ++    S++ +  ++P+    L G    
Sbjct: 240 ---------DCRARPLWAW-------------LQKFRGSSSEVPCSLPQR---LAGRDLK 274

Query: 692 NLSKNHLTG 700
            L+ N L G
Sbjct: 275 RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 49/266 (18%), Positives = 78/266 (29%), Gaps = 11/266 (4%)

Query: 509 DSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNA 568
           +  V  +         +P   G     Q + LH NR++   ++SFR C  L +L L  N 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 569 LYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNN 628
           L                +    + +     P     L  L  L L    +    P  F  
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 629 FTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGL 688
             A+      D  ++     T++            +  L L  N ++         L  L
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGN--------LTHLFLHGNRISSVPERAFRGLHSL 179

Query: 689 VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG 748
             L L +N +          L  L  L L  N L      +L+ L  L  + L+ N    
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 749 KIPTVTQLQSFNDTVYAGNPELCGLP 774
                           + +   C LP
Sbjct: 240 DCRARPLWAWLQKFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 6e-08
 Identities = 52/274 (18%), Positives = 98/274 (35%), Gaps = 28/274 (10%)

Query: 161 SYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLV 220
           +  + + L  + +++            + + L++   +   +  +          LE L 
Sbjct: 32  AASQRIFLHGNRISHVPA-----ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
           LSDN    S+ P   +      ++ L    LQ   P  F+ +  L++L L  N L+    
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI 340
             F ++ +L  L L  N++S       + L       SL  L L  +    +    F ++
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLH------SLDRLLLHQNRVAHVHPHAFRDL 200

Query: 341 SNLKELHLANNPLVLKLSHDWVPPFQLIIISLS------SCKIGPHFPKWLQTQNQIELL 394
             L  L+L  N L    +    P   L  + L+       C+  P    WLQ        
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQK------F 253

Query: 395 DISNTGISDTIPDWFWNLSNKFSFLDLASNQIKG 428
             S++ +  ++P              LA+N ++G
Sbjct: 254 RGSSSEVPCSLPQRLAGR----DLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 8e-10
 Identities = 36/215 (16%), Positives = 54/215 (25%), Gaps = 15/215 (6%)

Query: 85  KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLG 144
           K+     +N    + +   +P  +        L L   +        L   +RL  L+L 
Sbjct: 8   KVASHLEVNCDKRNLTA--LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 145 SNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIP 204
              L        L  L  L   +    +L         +  L                  
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 205 LSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVY 264
             L  L              N   ++ P L   +     + L  N L          +  
Sbjct: 124 GELQELY----------LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 265 LEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKL 299
           L+ L L  N L   IPK F     L    L  N  
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 34/215 (15%), Positives = 61/215 (28%), Gaps = 16/215 (7%)

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
             S + +N +  + +  +P  +   ++   L L  N L     ++    ++L  L+L + 
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR- 64

Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
                    +  +L  L  L L  N+            A           +         
Sbjct: 65  --AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL---------TVLDVSFNRLT 113

Query: 628 NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVG 687
           +          +           K       +    ++ L L+NNNL       +  L  
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 688 LVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL 722
           L  L L +N L   I         L F  L  N  
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 41/199 (20%), Positives = 61/199 (30%), Gaps = 19/199 (9%)

Query: 128 IPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLH 187
           +PP L        L L  N L  T +L  L   + L  LNL              +    
Sbjct: 25  LPPDLP--KDTTILHLSENLL-YTFSLATLMPYTRLTQLNL-------DRAELTKLQVDG 74

Query: 188 SLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLG 247
           +L    L +  L      SL  L  +    T++    N  +S+             + L 
Sbjct: 75  TLP--VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 248 FNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEII 307
            N+L+   P        LE L L+ N L          + +L TL L  N L        
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

Query: 308 QNLSSGCLENSLKSLYLEN 326
            +       + L   +L  
Sbjct: 193 GS-------HLLPFAFLHG 204

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 7e-05
 Identities = 29/179 (16%), Positives = 52/179 (29%), Gaps = 4/179 (2%)

Query: 391 IELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNH 450
             +L +S   +           +   + L+L   ++     + +     +          
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTR-LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 451 FEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDS 510
              L   LP+ +            S+         +L  + L  N L    P        
Sbjct: 92  LPLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 511 LVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNAL 569
           L  L+L NN+ +      +  L+N+ TL L  N L   +   F     L    L  N  
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 37/220 (16%), Positives = 56/220 (25%), Gaps = 15/220 (6%)

Query: 552 SFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVL 611
                +    ++  K  L   +P  +     +  +L L  N  +      L     L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 612 DLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN 671
           +L    ++                  +       L  T         S            
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-----------F 109

Query: 672 NNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLS 731
           N L       +  L  L  L L  N L       +     L+ L L+ N L       L+
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 732 QLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELC 771
            L  L  + L  N+L                   GNP LC
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (141), Expect = 1e-09
 Identities = 63/468 (13%), Positives = 117/468 (25%), Gaps = 28/468 (5%)

Query: 138 LQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANS--SDWFQVIGKLHSLKTLSLH 195
           +Q LD+    L      + L  L   + + LD+  L  +   D    +    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 196 SCYLPPVIPLSLNHL--NSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQG 253
           S  L  V    +       S  ++ L L +  LT +    L +      ++         
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSG 313
                 Q +           E                  ++   K   +   +  N  + 
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 314 CLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF-QLIIISL 372
                L     ++       +     +++     L           +      +L  + +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 373 SSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPN 432
           +    G   P        I    I+  G  D         S K   L       +G    
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 433 LSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDL 492
             +          +               SS L  ++      IS               
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC-- 361

Query: 493 SSNLLSGKLPDCWWTFDSLVILNLENNSFSGR----IPDSMGFLQNIQTLSLHNNRLTGE 548
                             L +L L +   S      +  ++    +++ L L NN L   
Sbjct: 362 ---------QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 549 ----LSSSFR-NCSQLRLLDLGKNALYGEIPTWMG---ESLSNLIVLS 588
               L  S R     L  L L       E+   +    +   +L V+S
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (129), Expect = 3e-08
 Identities = 54/456 (11%), Positives = 118/456 (25%), Gaps = 23/456 (5%)

Query: 163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSL-NHLNSSTSLETLVL 221
           ++ L++    L + + W +++  L   + + L  C L       + + L  + +L  L L
Sbjct: 4   IQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 222 SDNNLT----SSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG 277
             N L       +   L   S     + L    L G+        +         +  + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 278 GIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFF 337
            +      +     L+        QL     + +S     S+     +     V +    
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 338 SNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDIS 397
                +    L ++P  L+                    +              +L D+ 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 398 NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPP 457
              +   +      L   + +    + +  G L  +     +        +   +     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 458 LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLE 517
           L                      +   S  + V   +  L           D+       
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA------- 355

Query: 518 NNSFSGRIPDSMGFLQNIQTLSLHNNRLTGE----LSSSFRNCSQLRLLDLGKNALYGEI 573
                            ++ L L +  ++      L+++      LR LDL  N L    
Sbjct: 356 --GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 574 PTWMGESL----SNLIVLSLKSNKFHGKIPFQLCQL 605
              + ES+      L  L L    +  ++  +L  L
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 1e-07
 Identities = 65/468 (13%), Positives = 131/468 (27%), Gaps = 26/468 (5%)

Query: 88  DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDL----FGTVFAGPIPPQLGNLSRLQHLDL 143
           D++ L++   + S +   E +  L + + + L            I   L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 144 GSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVI 203
            SN L   G +  +          + + +L N        G L S       +      +
Sbjct: 63  RSNELGDVG-VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL----RTLPTLQEL 117

Query: 204 PLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMV 263
            LS N L  +          +         L   S    S +   + L+         + 
Sbjct: 118 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177

Query: 264 YLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLY 323
             +        L  G+      + +L   +      + +    I    +   E +L S  
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237

Query: 324 LENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPK 383
           L +     +        S L+ L +                    ++             
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECG-----ITAKGCGDLCRVLRAKESLKELSLAG 292

Query: 384 WLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPG 443
                    LL  +       +   +    +  +      + +  +   L     ++N  
Sbjct: 293 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 352

Query: 444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSG-SISFLCS--ISGSKLTYVDLSSNLLSGK 500
            D         +    S    L L+    S  S S L +  ++   L  +DLS+N L   
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 501 ----LPDCWWTFDS-LVILNLENNSFSGRIPDSMGFLQ----NIQTLS 539
               L +        L  L L +  +S  + D +  L+    +++ +S
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 61/481 (12%), Positives = 112/481 (23%), Gaps = 40/481 (8%)

Query: 213 STSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQG----SIPESFQHMVYLEHL 268
           S  +++L +    L+ + +  L  +      + L    L       I  + +    L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 269 RLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSL 328
            L  NEL               +  +    L                  +L +L   +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 329 TGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQ 388
             ++ ++    +             +              + S+   K            
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 389 NQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISS 448
                + +   G+ D+                     + G + + +S    +     +  
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 449 NHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTF 508
                L P L   SS L        G  +  C      L   +    L            
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 509 DSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNA 568
             L    LE       +             S  ++ L           S  RL D G   
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 569 LYGEIPTWMGESLSNLIVLSLKSNKFHGK----IPFQLCQLAFLQVLDLSLNNISGKIPK 624
           L       +G+  S L VL L            +   L     L+ LDLS N +      
Sbjct: 360 LCQ----GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 625 CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD 684
                                            R    L++ L L +   +  + + +  
Sbjct: 416 QLVESV---------------------------RQPGCLLEQLVLYDIYWSEEMEDRLQA 448

Query: 685 L 685
           L
Sbjct: 449 L 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 664 VKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQ----ISPKIGQLKSLDFLDLS 718
           ++SL++    L+ A   E++  L     + L    LT      IS  +    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 719 RNQLVGGIPSSLSQLSGLSVMDLSYNNLSG 748
            N+L       + Q        +   +L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 8e-05
 Identities = 53/451 (11%), Positives = 109/451 (24%), Gaps = 18/451 (3%)

Query: 63  LDLQPIDFDSFPLRGTISPALLK-LHDLRHLNLSFNDFSG---SPIPEFIGSLSKLRYLD 118
           LD+Q +D     L       LL  L   + + L     +      I   +     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 119 LFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSD 178
           L            +    +     +    L +         +       L      + SD
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 179 WFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNIS 238
                  L  L    L        + L    L++++          ++  +   +     
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS-----CEPLASVLRAKPDFKELTV 176

Query: 239 SIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNK 298
           S     + G   L   + +S   +  L+                     + +      + 
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 299 LSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLS 358
             G +             + L++L++               +   KE     +    +L 
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 359 HDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSF 418
            +        ++                T                 +     N   + + 
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 356

Query: 419 LDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSF--LNLSKNRFSGS- 475
           +      +      L   +       D+S +    L   L +N S   L+LS N    + 
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADC---DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 476 ISFLCSI---SGSKLTYVDLSSNLLSGKLPD 503
           I  L       G  L  + L     S ++ D
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 4e-04
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 688 LVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQL----VGGIPSSLSQLSGLSVMDLS 742
           + +L++    L+     ++   L+    + L    L       I S+L     L+ ++L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 743 YNNLSGKIP 751
            N L     
Sbjct: 64  SNELGDVGV 72

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 52/460 (11%), Positives = 114/460 (24%), Gaps = 27/460 (5%)

Query: 288 SLITLNLSNNKLS-GQLSEIIQNLSSGCLENSLKSLYLE-NSLTGVISE---SFFSNISN 342
            + +L++   +LS  + +E++  L         + + L+   LT    +   S       
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQ------CQVVRLDDCGLTEARCKDISSALRVNPA 56

Query: 343 LKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGIS 402
           L EL+L +N L     H  +   Q     +    +                L    T   
Sbjct: 57  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 116

Query: 403 DTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNS 462
             + D     +      +   +               S    +  ++             
Sbjct: 117 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 463 SFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFS 522
           S  ++++         L             S  + S    D      S   L       +
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 523 GRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLS 582
                 M  L           R                L  + +     +  +  G  L 
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 583 NLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 642
           +     L           +   +          ++ S  + +              +  +
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS----NNRL 352

Query: 643 KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVG----LVALNLSKNHL 698
           +D  +        +  S L   + L L++ +++ +    +   +     L  L+LS N L
Sbjct: 353 EDAGVRELCQGLGQPGSVL---RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 699 TGQISPKIGQ-----LKSLDFLDLSRNQLVGGIPSSLSQL 733
                 ++ +        L+ L L        +   L  L
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 9/73 (12%)

Query: 688 LVALNLSKNHLTGQ----ISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQ-----LSGLSV 738
           L  L L+   ++      ++  +    SL  LDLS N L       L +        L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 739 MDLSYNNLSGKIP 751
           + L     S ++ 
Sbjct: 431 LVLYDIYWSEEME 443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.0 bits (133), Expect = 8e-09
 Identities = 59/325 (18%), Positives = 109/325 (33%), Gaps = 20/325 (6%)

Query: 265 LEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCL-ENSLKSLY 323
              L L+   L   +P+   +   L +L  S N L+ +L E+ Q+L S  +  N+LK+L 
Sbjct: 40  AHELELNNLGLSS-LPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 324 LENSLTGVISESFFSNISNLKELHLANNPLVLKLSH--DWVPPFQLIIISLSSCKIGPHF 381
               L   +  S        +  + +   ++   ++    +P     +  +++       
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 382 PKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSN 441
              LQ    +  +   N  +           S       L        LP L++ +  +N
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 442 PGIDISSNH--FEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSG 499
               +       E L       +    L ++     +S       S+L       N  S 
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 500 KLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQL 559
           ++        SL  LN+ NN     +P        ++ L    N L  E+    +N   L
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN---L 326

Query: 560 RLLDLGKNALYGEIPTWMGESLSNL 584
           + L +  N L  E P    ES+ +L
Sbjct: 327 KQLHVEYNPLR-EFPDIP-ESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 9e-06
 Identities = 51/329 (15%), Positives = 98/329 (29%), Gaps = 22/329 (6%)

Query: 214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFN 273
                L L++  L+S     LP +     S+    N L   +PE  Q +  L     +  
Sbjct: 38  RQAHELELNNLGLSS-----LPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 274 ELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVIS 333
            L    P       S   L       +    +II   ++   +       LE    G   
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 334 ESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKW---LQTQNQ 390
                 + NL  L               +P     I++ ++        +    L T   
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 391 IELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNH 450
              L  +   +  ++       +      +L  +     +        +  P      N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 451 FEGLI---PPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWT 507
               I     LP +   LN+S N+     +        +L  +  S N L+ ++P+    
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIELPALP-----PRLERLIASFNHLA-EVPEL--- 322

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQ 536
             +L  L++E N      PD    +++++
Sbjct: 323 PQNLKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 47/316 (14%), Positives = 90/316 (28%), Gaps = 11/316 (3%)

Query: 444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSS-NLLSGKLP 502
           +++++     L P LP +   L  S N  +       S+    +   +L + + L   L 
Sbjct: 43  LELNNLGLSSL-PELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLE 101

Query: 503 DCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562
               + + L  L    NS   +I D              +       ++      +L+ L
Sbjct: 102 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNL 161

Query: 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI 622
                             L   +   +  N    ++P       FL  +    N +    
Sbjct: 162 PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL-PFLTTIYADNNLLKTLP 220

Query: 623 PKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEI 682
               +      ++       +    LT+        S L  +       N  +  +    
Sbjct: 221 DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 280

Query: 683 MDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS 742
                L  LN+S N L  ++     +L+    L  S N L   +P     L  L    + 
Sbjct: 281 DLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHL-AEVPELPQNLKQL---HVE 332

Query: 743 YNNLSGKIPTVTQLQS 758
           YN L         ++ 
Sbjct: 333 YNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 56/355 (15%), Positives = 96/355 (27%), Gaps = 44/355 (12%)

Query: 388 QNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDIS 447
             Q   L+++N G+S ++P+   +L +    L  + N +                     
Sbjct: 37  DRQAHELELNNLGLS-SLPELPPHLES----LVASCNSLTE------------------- 72

Query: 448 SNHFEGLIPPLPSNSSFLNLSKNRFSG---SISFLCSISGSKLTYVDLSSNLLSGKLPDC 504
                  +P LP +   L +  N           L  +  S      L     S  L   
Sbjct: 73  -------LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKII 125

Query: 505 WWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564
               +SL  L     S       +    +  +  +L         ++S +    L L   
Sbjct: 126 DVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE 185

Query: 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK 624
              A    +           +      N     +P     L  L V D  L ++      
Sbjct: 186 SIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQS 245

Query: 625 CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRST-LGLVKSLELSNNNLNGAVPEEIM 683
                 +            +   L    +E          ++ L +SNN L   +P    
Sbjct: 246 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP 304

Query: 684 DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSV 738
               L  L  S NHL  ++      LK    L +  N L    P     +  L +
Sbjct: 305 ---RLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 9e-04
 Identities = 43/329 (13%), Positives = 92/329 (27%), Gaps = 28/329 (8%)

Query: 314 CLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPL-----------VLKLSHDW 361
           CL+     L L    L+     S      +L+ L  + N L            L + ++ 
Sbjct: 35  CLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNN 89

Query: 362 VPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDL 421
           +     +   L    +  +  + L        L I +   +          S +F     
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 422 ASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCS 481
              +   +L NL           +      +  +      +    L +     ++ FL +
Sbjct: 150 NQLEELPELQNL-PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 482 ISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLH 541
           I         L     S +  +    + + +    ++ +F     +    L  +     +
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 542 NNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ 601
            N  + E+ S       L  L++  N L       +      L  L    N    ++P  
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKL-----IELPALPPRLERLIASFNHL-AEVPEL 322

Query: 602 LCQLAFLQVLDLSLNNISGKIPKCFNNFT 630
                 L+ L +  N +  + P    +  
Sbjct: 323 PQN---LKQLHVEYNPLR-EFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 49/305 (16%), Positives = 92/305 (30%), Gaps = 12/305 (3%)

Query: 458 LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPD--CWWTFDSLVILN 515
           L   +  L L+       +S L  +    L  +  S N L+ +LP+         +   N
Sbjct: 36  LDRQAHELELNNLG----LSSLPELPPH-LESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 516 LENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT 575
           L+  S    + + +G   N           +        N S  +L DL  +  +     
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 576 WMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 635
              E L  L  L   +  +      +      L +  +   N   +      N   +T  
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSK 695
            + +  +K    L         R            +             L  L       
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 696 NHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQ 755
           N  + +I        SL+ L++S N+L+  +P+   +L  L     S+N+L+        
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAEVPELPQN 325

Query: 756 LQSFN 760
           L+  +
Sbjct: 326 LKQLH 330

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.1 bits (123), Expect = 4e-08
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 5/178 (2%)

Query: 440 SNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSG 499
               +D +    + +   +P +++ L L+ N      S         L  ++L  N L+G
Sbjct: 9   EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 500 KLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQL 559
             P+ +     +  L L  N            L  ++TL+L++N+++  +  SF + + L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNN 617
             L+L  N                L   SL         P    ++  +Q+ DL  + 
Sbjct: 129 TSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 13/187 (6%)

Query: 287 CSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLE-NSLTGVISESFFSNISNLKE 345
           C   T++ +       L EI +++           L L  N L  + S+  F  + +L +
Sbjct: 8   CEGTTVDCTGR----GLKEIPRDIPL-----HTTELLLNDNELGRISSDGLFGRLPHLVK 58

Query: 346 LHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTI 405
           L L  N L     + +     +  + L   KI     K     +Q++ L++ +  IS  +
Sbjct: 59  LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

Query: 406 PDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFL 465
           P  F +L++  S    ++             F        ++        P    +    
Sbjct: 119 PGSFEHLNSLTSLNLASNPFNCNCHLA---WFAEWLRKKSLNGGAARCGAPSKVRDVQIK 175

Query: 466 NLSKNRF 472
           +L  + F
Sbjct: 176 DLPHSEF 182

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 4e-08
 Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 6/230 (2%)

Query: 75  LRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGN 134
                         ++H++LS +    S +   +   SKL+ L L G   + PI   L  
Sbjct: 34  FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93

Query: 135 LSRLQHLDLGSNY-LFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGK-LHSLKTL 192
            S L  L+L              LS  S L  LNL              +     ++  L
Sbjct: 94  NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 153

Query: 193 SLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDL-GFNQL 251
           +L               +    +L  L LSD+ +  +         +    + L     +
Sbjct: 154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 213

Query: 252 QGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG 301
                     +  L+ L++     +G +      +     L ++ +  + 
Sbjct: 214 IPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 663 LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL 722
           L ++L+L+  NL+  V   ++   G++A    ++ +  Q   +      +  +DLS + +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVI 58

Query: 723 -VGGIPSSLSQLSGLSVMDLSYNNLSGKIP 751
            V  +   LSQ S L  + L    LS  I 
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIV 88

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 4/244 (1%)

Query: 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEI 573
           L+L   +    +   +   Q +       + +   L+  F    +++ +DL  + +    
Sbjct: 5   LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVST 62

Query: 574 PTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMT 633
              +    S L  LSL+  +    I   L + + L  L+LS  +   +        +   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 634 QERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNL 693
            +  +     D      + +      T+  +       N     +   +     LV L+L
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 694 SKNHL-TGQISPKIGQLKSLDFLDLSR-NQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIP 751
           S + +       +  QL  L  L LSR   ++      L ++  L  + +      G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 752 TVTQ 755
            + +
Sbjct: 243 LLKE 246

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 39/271 (14%), Positives = 87/271 (32%), Gaps = 26/271 (9%)

Query: 465 LNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR 524
           L+L+       +     +    +       + +   L + + +   +  ++L N+     
Sbjct: 5   LDLTGKNLHPDV--TGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVS 61

Query: 525 -IPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSN 583
            +   +     +Q LSL   RL+  + ++    S L  L+L   + + E       S  +
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 584 LIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK 643
            +     S  F          +A +      LN    +     ++ + + +   +   + 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 644 DKLMLTWKGSEREYRSTLGLVKSLELSNN--------------------NLNGAVPEEIM 683
               +  K    +    L  ++ L LS                       + G VP+  +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 684 DLV--GLVALNLSKNHLTGQISPKIGQLKSL 712
            L+   L  L ++ +H T    P IG  K+ 
Sbjct: 242 QLLKEALPHLQINCSHFTTIARPTIGNKKNQ 272

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 37/287 (12%), Positives = 77/287 (26%), Gaps = 16/287 (5%)

Query: 190 KTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFN 249
           +TL L    L P +   L        +       + +   +             +DL  +
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG----VIAFRCPRSFMDQPLAEHFSPFR--VQHMDLSNS 56

Query: 250 QLQG-SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN---LSNNKLSGQLSE 305
            ++  ++         L++L L    L   I        +L+ LN    S        + 
Sbjct: 57  VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 306 IIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF 365
           +        L  S    + E  +   ++    +        +  N       +     P 
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 366 QLIIISLSSCKIGPHFPKWLQTQNQIELLDISN-TGISDTIPDWFWNLSNKFSFLDLASN 424
            + +    S  +     +     N ++ L +S    I          +      L +   
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT-LKTLQVFGI 235

Query: 425 QIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNR 471
              G L  L        P + I+ +HF  +  P   N     +   +
Sbjct: 236 VPDGTLQLLKEAL----PHLQINCSHFTTIARPTIGNKKNQEIWGIK 278

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 37/292 (12%), Positives = 80/292 (27%), Gaps = 17/292 (5%)

Query: 79  ISPALLKLHDLRHLNLSFNDFSG---SPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNL 135
           +   LL+   ++ + LS N         + E I S   L   +                L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 136 SRLQHLDLGSNYLFST--------GNLDWLSHLSYLRYLNLDESNLANSSDW-FQVIGKL 186
             L    L    L +                     ++  L+   L N+           
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 187 HSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDL 246
            +L+ L+++          S+    +     ++        S        +    I  + 
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 247 GFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEI 306
             + L   +    +  V         +     +     +  +L  L L++  LS + +  
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 307 IQNLSSGCLENSLKSLYLE-NSLTG----VISESFFSNISNLKELHLANNPL 353
           + +  S      L++L L+ N +       +       + +L  L L  N  
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 35/324 (10%), Positives = 90/324 (27%), Gaps = 47/324 (14%)

Query: 481 SISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR----IPDSMGFLQNIQ 536
           SI G  L    +++      +       DS+  + L  N+        + +++   ++++
Sbjct: 4   SIEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 537 TLSLHNNRLT----------GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGE------- 579
                +                L  +   C +L  + L  NA        + +       
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 580 ---------SLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK-----C 625
                     L       +        +  +      L+ +    N +     K      
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 626 FNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDL 685
            ++    T +   +    + +           +    L        +  + A+   +   
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 686 VGLVALNLSKNHLTGQISPKIGQ------LKSLDFLDLSRNQLVGGIPSSL-----SQLS 734
             L  L L+   L+ + +  +           L  L L  N++      +L      ++ 
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 735 GLSVMDLSYNNLSGKIPTVTQLQS 758
            L  ++L+ N  S +   V +++ 
Sbjct: 303 DLLFLELNGNRFSEEDDVVDEIRE 326

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 7e-06
 Identities = 36/251 (14%), Positives = 67/251 (26%), Gaps = 16/251 (6%)

Query: 503 DCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562
            C        +   + +  +  IP      +N   L     +L      +F     L  +
Sbjct: 7   HCSNR-----VFLCQESKVT-EIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKI 58

Query: 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI 622
           ++ +N +   I   +  +L  L  + ++       I  +  Q        L  N     +
Sbjct: 59  EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 118

Query: 623 PKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEI 682
           P      +           I    +         +         L L+ N +        
Sbjct: 119 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE-----SVILWLNKNGIQEIHNCAF 173

Query: 683 MDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS 742
                        N+L    +           LD+SR ++       L  L  L     S
Sbjct: 174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RS 231

Query: 743 YNNLSGKIPTV 753
             NL  K+PT+
Sbjct: 232 TYNLK-KLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 32/258 (12%), Positives = 60/258 (23%), Gaps = 27/258 (10%)

Query: 43  RDC-CKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSG 101
           R C C      C       I  DL                      +   L         
Sbjct: 4   RICHCSNRVFLCQESKVTEIPSDLPR--------------------NAIELRFVLTKLRV 43

Query: 102 SPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLS 161
                       L  +++        I   + +     H       +    NL +++  +
Sbjct: 44  IQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH----EIRIEKANNLLYINPEA 98

Query: 162 YLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVL 221
           +    NL    ++N+                 L        I     +     S E+++L
Sbjct: 99  FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 158

Query: 222 SDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIP-ESFQHMVYLEHLRLSFNELEGGIP 280
             N              +    ++L  N     +P + F        L +S   +     
Sbjct: 159 WLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 218

Query: 281 KFFGNMCSLITLNLSNNK 298
               N+  L   +  N K
Sbjct: 219 YGLENLKKLRARSTYNLK 236

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 7e-06
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 12/111 (10%)

Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL 303
           + L    L  ++    + ++ + HL LS N L    P             L   ++    
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALA---------ALRCLEVLQAS 51

Query: 304 SEIIQNLSSGCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPL 353
              ++N+        L+ L L  N L    +     +   L  L+L  N L
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 78  TISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSR 137
           T+   L +L  + HL+LS N      +P  + +L  L  L                NL R
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVA--NLPR 66

Query: 138 LQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWF-QVIGKLHSLKTL 192
           LQ L L +N L  +  +  L     L  LNL  ++L        ++   L S+ ++
Sbjct: 67  LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 11/114 (9%)

Query: 206 SLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYL 265
            L HL     +  L LS N L +      P ++++     L  +       +   ++  L
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQASDNALENVDGVANLPRL 67

Query: 266 EHLRLSFNELEGG-IPKFFGNMCSLITLNLSNNKLSG------QLSEIIQNLSS 312
           + L L  N L+     +   +   L+ LNL  N L        +L+E++ ++SS
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 121

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 26/117 (22%)

Query: 665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDF---------- 714
           + L L++ +L   V   +  L+ +  L+LS N L     P +  L+ L+           
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALEN 57

Query: 715 ------------LDLSRNQLVGG-IPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQS 758
                       L L  N+L        L     L +++L  N+L  +     +L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 8e-05
 Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 14/219 (6%)

Query: 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567
             + + +    ++ +  +  +   L  I TLS     +T       +  + L  L+L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQAD--LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73

Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
            +    P      ++ L +              Q  +   L    ++       +     
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 628 NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLEL-----SNNNLNGAVPEEI 682
            +  + Q  +  P      +        +      L    +L      +N ++      +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPL 191

Query: 683 MDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQ 721
             L  L+ ++L  N ++      +    +L  + L+ NQ
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 31/232 (13%), Positives = 68/232 (29%), Gaps = 19/232 (8%)

Query: 102 SPIPEFI--GSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSH 159
           + I       +L+    +    +     +     +L  +  L      + +   + +L++
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNN 64

Query: 160 LSYLRYL-NLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLET 218
           L  L    N         +       +L      ++ +      I          T +  
Sbjct: 65  LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 219 LVLSDNNLTSSIYPWLPNISSIFISIDLGFNQ----LQGSIPESFQHMVYLEHLRLSFNE 274
           L    N     +        S    +           Q S      ++  L  L+   N+
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 275 LEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLEN 326
           +    P    ++ +LI ++L NN++S      + N S      +L  + L N
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISD--VSPLANTS------NLFIVTLTN 226

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 15/195 (7%)

Query: 555 NCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLS 614
             ++    +L K ++   +       L+++  +   ++        Q   L  +  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLN 76

Query: 615 LNNISG-------KIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL 667
            N ++        K            ++ SS   +K    L+ + +     + L  +  L
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 668 ELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIP 727
           E      N      ++  +  +     +++    I P +  L  L  L LS+N +     
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--L 193

Query: 728 SSLSQLSGLSVMDLS 742
            +L+ L  L V++L 
Sbjct: 194 RALAGLKNLDVLELF 208

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 9e-04
 Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 14/154 (9%)

Query: 420 DLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSK-NRFSGSISF 478
           +L   Q++     +S R+  S   +D+         P L + +  + L++ +  + ++  
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRS---DPDLVAQNIDVVLNRRSSMAATLRI 59

Query: 479 LCSISGSKLTYVDLSSNLLSGK--LPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQ 536
           +   +  +L  ++LS+N L     +        +L ILNL  N               ++
Sbjct: 60  IEE-NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 537 TLSLHNNRLTGELSSS-------FRNCSQLRLLD 563
            L L  N L+                  +L  LD
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 510 SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNAL 569
           S   L+L+      R    +        L+  ++     L     N  +L  L+L  N L
Sbjct: 23  SQQALDLKGL----RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRL 77

Query: 570 YG-EIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNN 628
           Y  +  + + +   NL +L+L  N+   +      +   L+ L L  N++S         
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 629 FTAM 632
            +A+
Sbjct: 138 ISAI 141

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 54  SNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSK 113
                +   +  + +D   + +   I      L     ++ S N+       +    L +
Sbjct: 9   EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRR 64

Query: 114 LRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNL 173
           L+ L +               L  L  L L +N L   G+LD L+ L  L YL +  + +
Sbjct: 65  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124

Query: 174 ANSSDW-FQVIGKLHSLKTL 192
            N   +   VI K+  ++ L
Sbjct: 125 TNKKHYRLYVIYKVPQVRVL 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	833
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.41
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.56
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.94
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.76

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4.3e-39  Score=338.11  Aligned_cols=294  Identities=29%  Similarity=0.398  Sum_probs=208.7

Q ss_pred             CCCHHHHHHHHHhhhcCcCCCCCCCCCCCCCCCCCCC--cccceEecCCC--CcEEEEECCCCCCCCCCcce--ecCccc
Q 048006           10 RCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCC--KWTGLRCSNKT--NHVILLDLQPIDFDSFPLRG--TISPAL   83 (833)
Q Consensus        10 ~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~~~~c--~w~gv~c~~~~--~~v~~l~L~~~~~~~~~l~~--~~~~~l   83 (833)
                      -|.++|++||++||+++.+|. .+++|.   .++|||  .|+||+|+..+  +||++|+|++     +.++|  .+|+++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~-----~~l~g~~~lp~~l   72 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-----LNLPKPYPIPSSL   72 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-----CCCSSCEECCGGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCC-----CCCCCCCCCChHH
Confidence            499999999999999998874 799998   478999  49999998644  4899999999     66766  578899


Q ss_pred             cCCCCCCEEeCCC-CCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCC
Q 048006           84 LKLHDLRHLNLSF-NDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY  162 (833)
Q Consensus        84 ~~l~~L~~L~Ls~-n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  162 (833)
                      +++++|++|+|++ |+++|. +|+.|+++++|++|+|++|++.+..|..+..+.+|++++++.|.+.. .          
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~-~----------  140 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-T----------  140 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-C----------
T ss_pred             hcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccc-c----------
Confidence            9999999999986 788875 89999999999999999999988888888888888888888887653 2          


Q ss_pred             CcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCc
Q 048006          163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI  242 (833)
Q Consensus       163 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~  242 (833)
                                      +|..+++++.|+++++++|.+.+.+|.  ........++.+++++|++++..|..+..+..  .
T Consensus       141 ----------------~p~~l~~l~~L~~l~l~~n~l~~~ip~--~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~--~  200 (313)
T d1ogqa_         141 ----------------LPPSISSLPNLVGITFDGNRISGAIPD--SYGSFSKLFTSMTISRNRLTGKIPPTFANLNL--A  200 (313)
T ss_dssp             ----------------CCGGGGGCTTCCEEECCSSCCEEECCG--GGGCCCTTCCEEECCSSEEEEECCGGGGGCCC--S
T ss_pred             ----------------CchhhccCcccceeecccccccccccc--cccccccccccccccccccccccccccccccc--c
Confidence                            333445555555555555555555554  33333222356666666666666666555543  3


Q ss_pred             EEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEE
Q 048006          243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSL  322 (833)
Q Consensus       243 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L  322 (833)
                      .++++.+...+.+|..+..+++++.+++++|.+.+.+| .++.+++|++|+|++|+++|.+|+.+++++      +|++|
T Consensus       201 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~------~L~~L  273 (313)
T d1ogqa_         201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK------FLHSL  273 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCT------TCCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCC------CCCEE
Confidence            56777777776667667777777777777777765443 466667777777777777766666666655      55555


Q ss_pred             Eccccc-ccccChhhhcCCCCCCEEECcCCcc
Q 048006          323 YLENSL-TGVISESFFSNISNLKELHLANNPL  353 (833)
Q Consensus       323 ~L~~~~-~~~i~~~~~~~l~~L~~L~L~~n~l  353 (833)
                      +|++|. .+.+|.  +.++++|+.+++++|+.
T Consensus       274 ~Ls~N~l~g~iP~--~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         274 NVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             ECCSSEEEEECCC--STTGGGSCGGGTCSSSE
T ss_pred             ECcCCcccccCCC--cccCCCCCHHHhCCCcc
Confidence            553332 235553  45666666666666653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=2e-32  Score=286.99  Aligned_cols=259  Identities=32%  Similarity=0.517  Sum_probs=239.8

Q ss_pred             CcccEEEcCCCcCcC--CCCCcccCCCCCcEEEccC-CcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcE
Q 048006          485 SKLTYVDLSSNLLSG--KLPDCWWTFDSLVILNLEN-NSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRL  561 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  561 (833)
                      .+++.|++++|.+++  .+|..++.+++|++|+|++ |.++|.+|..++++++|++|+|++|++.+..+..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            468999999999987  4789999999999999997 8999999999999999999999999999999999999999999


Q ss_pred             eccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCC-CEEeccCCcCcccCCccccccccccccCCCCc
Q 048006          562 LDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFL-QVLDLSLNNISGKIPKCFNNFTAMTQERSSDP  640 (833)
Q Consensus       562 L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  640 (833)
                      +++++|.+.+.+|..+. .++.++++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..         
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~---------  199 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL---------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC---------
T ss_pred             cccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc---------
Confidence            99999999999999887 69999999999999999999999988886 88999999999988887765543         


Q ss_pred             ccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCC
Q 048006          641 TIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRN  720 (833)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  720 (833)
                                              ..++++++...+.+|..+..+++++.+++++|.+++.+| .++.+++|+.|+|++|
T Consensus       200 ------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N  254 (313)
T d1ogqa_         200 ------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             ------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSS
T ss_pred             ------------------------ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccC
Confidence                                    569999999999999999999999999999999997655 6888999999999999


Q ss_pred             cCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCCCCC
Q 048006          721 QLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKC  779 (833)
Q Consensus       721 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c  779 (833)
                      +++|.+|+.+.++++|++|||++|+|+|.+|+.+.+..++.+++.||+.+||.|++ .|
T Consensus       255 ~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             eecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            99999999999999999999999999999999888899999999999999998875 66

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.5e-25  Score=241.96  Aligned_cols=356  Identities=21%  Similarity=0.257  Sum_probs=214.7

Q ss_pred             ECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEEC
Q 048006          269 RLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHL  348 (833)
Q Consensus       269 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L  348 (833)
                      .+..+.+++.+.  ...+.+|++|+++++.++..  +.+..++      +|++|++++|.+..+++  ++++++|++|++
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~------nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L   95 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLN------NLTQINFSNNQLTDITP--LKNLTKLVDILM   95 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCT------TCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCC------CCCEEeCcCCcCCCCcc--ccCCcccccccc
Confidence            455555554433  34566777778877777643  2344555      56666665555555553  555555555555


Q ss_pred             cCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccc
Q 048006          349 ANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKG  428 (833)
Q Consensus       349 ~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~  428 (833)
                      ++|++...                        .  .+..+++|+.|+++++.+++..+....   ..+.......|.+..
T Consensus        96 ~~n~i~~i------------------------~--~l~~l~~L~~L~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~  146 (384)
T d2omza2          96 NNNQIADI------------------------T--PLANLTNLTGLTLFNNQITDIDPLKNL---TNLNRLELSSNTISD  146 (384)
T ss_dssp             CSSCCCCC------------------------G--GGTTCTTCCEEECCSSCCCCCGGGTTC---TTCSEEEEEEEEECC
T ss_pred             cccccccc------------------------c--ccccccccccccccccccccccccccc---ccccccccccccccc
Confidence            55555432                        1  145555666666666655543332211   134444444444432


Q ss_pred             cCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCC
Q 048006          429 KLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTF  508 (833)
Q Consensus       429 ~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l  508 (833)
                      ..+..   .. .........                  ......    ...  ...+.........|...  ....+..+
T Consensus       147 ~~~~~---~~-~~~~~~~~~------------------~~~~~~----~~~--~~~~~~~~~~~~~~~~~--~~~~~~~l  196 (384)
T d2omza2         147 ISALS---GL-TSLQQLSFG------------------NQVTDL----KPL--ANLTTLERLDISSNKVS--DISVLAKL  196 (384)
T ss_dssp             CGGGT---TC-TTCSEEEEE------------------ESCCCC----GGG--TTCTTCCEEECCSSCCC--CCGGGGGC
T ss_pred             ccccc---cc-ccccccccc------------------cccchh----hhh--ccccccccccccccccc--cccccccc
Confidence            11110   00 000000000                  000000    000  00133334444444433  23455667


Q ss_pred             CCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEE
Q 048006          509 DSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLS  588 (833)
Q Consensus       509 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~  588 (833)
                      ++++.+++++|.+++..|  +..+++|++|++++|+++..  ..+..+++|+.|++++|++++ ++. +. .+++|++|+
T Consensus       197 ~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~-~~-~~~~L~~L~  269 (384)
T d2omza2         197 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP-LS-GLTKLTELK  269 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GT-TCTTCSEEE
T ss_pred             cccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCC-CCc-cc-ccccCCEee
Confidence            778888888887776543  45567788888888887742  357778888888888888873 433 22 478888888


Q ss_pred             ecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEE
Q 048006          589 LKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLE  668 (833)
Q Consensus       589 L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  668 (833)
                      +++|++++..  .+..++.++.+++++|.+.+.  ..+..++                                .++.|+
T Consensus       270 l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~--------------------------------~l~~L~  313 (384)
T d2omza2         270 LGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLK--------------------------------NLTYLT  313 (384)
T ss_dssp             CCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCT--------------------------------TCSEEE
T ss_pred             ccCcccCCCC--ccccccccccccccccccccc--cccchhc--------------------------------ccCeEE
Confidence            8888887543  366788888888888888642  2233333                                348889


Q ss_pred             ccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006          669 LSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN  744 (833)
Q Consensus       669 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  744 (833)
                      +++|++++..  .+..+++|++|++++|++++ + +.++++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       314 ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l-~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         314 LYFNNISDIS--PVSSLTKLQRLFFANNKVSD-V-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCCCc--ccccCCCCCEEECCCCCCCC-C-hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9999888643  37888999999999999885 3 368889999999999999987654  888899999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=2.3e-25  Score=240.55  Aligned_cols=85  Identities=19%  Similarity=0.265  Sum_probs=52.0

Q ss_pred             cCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCC
Q 048006           84 LKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYL  163 (833)
Q Consensus        84 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L  163 (833)
                      ..+.+|++|++++++|+.  + +.++.+++|++|+|++|++++ +| .++++++|++|++++|.+..   ...++++++|
T Consensus        41 ~~l~~l~~L~l~~~~I~~--l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~---i~~l~~l~~L  112 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIAD---ITPLANLTNL  112 (384)
T ss_dssp             HHHTTCCEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC---CGGGTTCTTC
T ss_pred             HHhCCCCEEECCCCCCCC--c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccccc---cccccccccc
Confidence            345567777777776663  3 345666777777777777664 33 26666777777777666632   2345566666


Q ss_pred             cEEecCCCCCCCC
Q 048006          164 RYLNLDESNLANS  176 (833)
Q Consensus       164 ~~L~Ls~n~~~~~  176 (833)
                      +.|+++++.+++.
T Consensus       113 ~~L~~~~~~~~~~  125 (384)
T d2omza2         113 TGLTLFNNQITDI  125 (384)
T ss_dssp             CEEECCSSCCCCC
T ss_pred             ccccccccccccc
Confidence            6666666665553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.8e-25  Score=226.58  Aligned_cols=259  Identities=20%  Similarity=0.146  Sum_probs=208.4

Q ss_pred             cEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCC-
Q 048006          488 TYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGK-  566 (833)
Q Consensus       488 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-  566 (833)
                      ..++.++++++ .+|..+.  +++++|+|++|+|++..+.+|.++++|++|++++|++....+..+..++.++.++... 
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            34566777777 4565443  5788999999999877777889999999999999999988888888888888887754 


Q ss_pred             CccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccce
Q 048006          567 NALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKL  646 (833)
Q Consensus       567 n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~  646 (833)
                      |.+. .++...+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..|..++.|              
T Consensus        91 ~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L--------------  155 (284)
T d1ozna_          91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------  155 (284)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             cccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch--------------
Confidence            4454 6655555578999999999999887777788888999999999999987777777766665              


Q ss_pred             EEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccC
Q 048006          647 MLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGI  726 (833)
Q Consensus       647 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  726 (833)
                                        +.|++++|++++..+..|.++++|+++++++|++++..|..|..+++|++||+++|++.+..
T Consensus       156 ------------------~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         156 ------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             ------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ------------------hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence                              89999999999888889999999999999999999999999999999999999999999998


Q ss_pred             CccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 048006          727 PSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGI  790 (833)
Q Consensus       727 p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c~~~~~~~~~~~  790 (833)
                      |..|..+++|++|++++|++.|.++......+++......+.        ..|..|...++.+.
T Consensus       218 ~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~--------~~C~~p~~l~g~~l  273 (284)
T d1ozna_         218 TEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE--------VPCSLPQRLAGRDL  273 (284)
T ss_dssp             HHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECC--------CBEEESGGGTTCBG
T ss_pred             ccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCc--------eEeCCchHHcCCcc
Confidence            899999999999999999999988755433344433322232        35655555555333

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.8e-23  Score=215.90  Aligned_cols=223  Identities=23%  Similarity=0.290  Sum_probs=112.8

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL  564 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  564 (833)
                      +.+++|++++|+|+...+..|.++++|++|++++|.+....|..|.+++.|++|++++|+++. +|..  ....++.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhc
Confidence            345555555555554444445555555555555555555445555555555555555555553 2221  1234555555


Q ss_pred             CCCccCCCCCcchhhcCCccceEEecCCccc--ccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccc
Q 048006          565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFH--GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI  642 (833)
Q Consensus       565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  642 (833)
                      .+|.+. .++...+.....++.++...|...  ...+..+..+++|+.+++++|.+.. +|..+                
T Consensus       108 ~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~----------------  169 (305)
T d1xkua_         108 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL----------------  169 (305)
T ss_dssp             CSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC----------------
T ss_pred             cccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc----------------
Confidence            555554 344433334444555555554322  2233345555555555555555542 22111                


Q ss_pred             ccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcC
Q 048006          643 KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL  722 (833)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  722 (833)
                                        +++++.|++++|..++..+..+.+++.+++|++++|.+++..+..+.++++|++|+|++|+|
T Consensus       170 ------------------~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L  231 (305)
T d1xkua_         170 ------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  231 (305)
T ss_dssp             ------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             ------------------CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccc
Confidence                              12235555555555555555555555555555555555555555555555555555555555


Q ss_pred             cccCCccccCCCCCCEEECcCCcCc
Q 048006          723 VGGIPSSLSQLSGLSVMDLSYNNLS  747 (833)
Q Consensus       723 ~~~~p~~l~~l~~L~~L~ls~N~l~  747 (833)
                      + .+|.++..+++|++|++++|+|+
T Consensus       232 ~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         232 V-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             S-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             c-ccccccccccCCCEEECCCCccC
Confidence            5 34455555555555555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.7e-23  Score=217.47  Aligned_cols=269  Identities=22%  Similarity=0.267  Sum_probs=208.3

Q ss_pred             CcccceEecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcc-ccccCCCCCCEEEccCCCC
Q 048006           46 CKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIP-EFIGSLSKLRYLDLFGTVF  124 (833)
Q Consensus        46 c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p-~~~~~l~~L~~L~Ls~n~l  124 (833)
                      |.|++|.|.+.                 +++ .+|+.+.  +.+++|+|++|+|+.  +| ..|.++++|++|++++|.+
T Consensus        10 c~~~~~~C~~~-----------------~L~-~lP~~l~--~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~   67 (305)
T d1xkua_          10 CHLRVVQCSDL-----------------GLE-KVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKI   67 (305)
T ss_dssp             EETTEEECTTS-----------------CCC-SCCCSCC--TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCC
T ss_pred             ecCCEEEecCC-----------------CCC-ccCCCCC--CCCCEEECcCCcCCC--cChhHhhccccccccccccccc
Confidence            78999999642                 232 3455553  579999999999985  55 4799999999999999999


Q ss_pred             CCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCC
Q 048006          125 AGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIP  204 (833)
Q Consensus       125 ~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  204 (833)
                      ....|..|.++++|++|++++|++....  .  .....++.|++++|.+..+..  ..+.....++.++...+.......
T Consensus        68 ~~i~~~~f~~l~~L~~L~l~~n~l~~l~--~--~~~~~l~~L~~~~n~l~~l~~--~~~~~~~~~~~l~~~~n~~~~~~~  141 (305)
T d1xkua_          68 SKISPGAFAPLVKLERLYLSKNQLKELP--E--KMPKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGI  141 (305)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSSCCSBCC--S--SCCTTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGB
T ss_pred             cccchhhhhCCCccCEecccCCccCcCc--c--chhhhhhhhhccccchhhhhh--hhhhccccccccccccccccccCC
Confidence            9877889999999999999999986422  2  234688999999999988643  457778888999988876533221


Q ss_pred             ccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCccccccccccc
Q 048006          205 LSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFG  284 (833)
Q Consensus       205 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~  284 (833)
                      .. ..+..+++|+.+++++|.++. ++..+  .++ +++|++++|..++..+..|.+++.+++|++++|.+++..+.++.
T Consensus       142 ~~-~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~-L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~  216 (305)
T d1xkua_         142 EN-GAFQGMKKLSYIRIADTNITT-IPQGL--PPS-LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  216 (305)
T ss_dssp             CT-TGGGGCTTCCEEECCSSCCCS-CCSSC--CTT-CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             Cc-cccccccccCccccccCCccc-cCccc--CCc-cCEEECCCCcCCCCChhHhhcccccccccccccccccccccccc
Confidence            11 233334899999999999874 34433  345 89999999999999999999999999999999999998889999


Q ss_pred             CCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhc------CCCCCCEEECcCCccc
Q 048006          285 NMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFS------NISNLKELHLANNPLV  354 (833)
Q Consensus       285 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~------~l~~L~~L~L~~n~l~  354 (833)
                      ++++|++|+|++|+++.. |..+..++      +|++|++++|.++.++...|.      .+++|+.|++++|++.
T Consensus       217 ~l~~L~~L~L~~N~L~~l-p~~l~~l~------~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         217 NTPHLRELHLNNNKLVKV-PGGLADHK------YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             GSTTCCEEECCSSCCSSC-CTTTTTCS------SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccceeeeccccccccc-cccccccc------CCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            999999999999999854 55677777      777777777777777655443      3455666666666553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.1e-24  Score=219.53  Aligned_cols=235  Identities=22%  Similarity=0.238  Sum_probs=195.1

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcc-cCcCccccCccccCCCCCcEec
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLH-NNRLTGELSSSFRNCSQLRLLD  563 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~  563 (833)
                      +.+++|+|++|+|+...+..|.++++|++|++++|.+....+..+..+..++.+... .+.++...+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            567889999999987777789999999999999999998888888888889988765 5677777788899999999999


Q ss_pred             cCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006          564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK  643 (833)
Q Consensus       564 L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  643 (833)
                      +++|.+. .++...+....+|+.+++++|.+++..+..|..+++|+.|++++|++++..+..|.++++|           
T Consensus       112 l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L-----------  179 (284)
T d1ozna_         112 LDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-----------  179 (284)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred             cCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc-----------
Confidence            9999987 5555444468899999999999997777888899999999999999988777888777766           


Q ss_pred             cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006          644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV  723 (833)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  723 (833)
                                           +.+++++|++++..|..|..+++|++|++++|++++..|..|+.+++|+.|+|++|++.
T Consensus       180 ---------------------~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         180 ---------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ---------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ---------------------chhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence                                 88999999999888999999999999999999999888888999999999999999988


Q ss_pred             ccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006          724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTV  753 (833)
Q Consensus       724 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  753 (833)
                      ..-+.. .-...++.+....+++.+..|..
T Consensus       239 C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         239 CDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             CSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             CCccch-HHHHHHHhCcCCCCceEeCCchH
Confidence            643311 11123556667778888877754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.7e-23  Score=208.35  Aligned_cols=203  Identities=24%  Similarity=0.275  Sum_probs=146.5

Q ss_pred             CCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEE
Q 048006          509 DSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLS  588 (833)
Q Consensus       509 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~  588 (833)
                      .++.+++.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++ .+|.. . .+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~-~-~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTCCEEE
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc-c-ccccccccc
Confidence            34444555555555 2343332  35666666666666555556666666666666666665 45432 2 466777777


Q ss_pred             ecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEE
Q 048006          589 LKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLE  668 (833)
Q Consensus       589 L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  668 (833)
                      +++|++++ .+..+..+++|+.|++++|.+.+..+..+..+..+                                +.|+
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l--------------------------------~~L~  130 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------QELY  130 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------CEEE
T ss_pred             cccccccc-cccccccccccccccccccccceeecccccccccc--------------------------------cccc
Confidence            77777763 45567777888888888888776555555555444                                7888


Q ss_pred             ccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 048006          669 LSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG  748 (833)
Q Consensus       669 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  748 (833)
                      +++|.+++..+..+..++.|+.|++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|++++|++.+
T Consensus       131 l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            8888888777777788899999999999999888888999999999999999998 788888889999999999999887


Q ss_pred             CCC
Q 048006          749 KIP  751 (833)
Q Consensus       749 ~ip  751 (833)
                      .+.
T Consensus       210 dC~  212 (266)
T d1p9ag_         210 NCE  212 (266)
T ss_dssp             SGG
T ss_pred             Ccc
Confidence            654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-22  Score=204.49  Aligned_cols=205  Identities=23%  Similarity=0.256  Sum_probs=175.1

Q ss_pred             CcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCE
Q 048006          531 FLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQV  610 (833)
Q Consensus       531 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~  610 (833)
                      ....+.+.+.+++.++. +|..+.  +++++|+|++|+|+ .+|...+..+++|++|+|++|+++. +| .+..+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccc-cc-cccccccccc
Confidence            45567778999999994 676553  57999999999998 6776655579999999999999984 44 4578999999


Q ss_pred             EeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcE
Q 048006          611 LDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVA  690 (833)
Q Consensus       611 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  690 (833)
                      |+|++|++++ .+..+..++.|                                +.|++++|.+.+..+..+..+.++++
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L--------------------------------~~L~l~~~~~~~~~~~~~~~l~~l~~  128 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPAL--------------------------------TVLDVSFNRLTSLPLGALRGLGELQE  128 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTC--------------------------------CEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             cccccccccc-ccccccccccc--------------------------------ccccccccccceeecccccccccccc
Confidence            9999999974 45556555555                                99999999999888888999999999


Q ss_pred             EECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCC
Q 048006          691 LNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPE  769 (833)
Q Consensus       691 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~  769 (833)
                      |++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|++||+++|+|+ .+|.. .....+..+.+.||||
T Consensus       129 L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            999999999888888899999999999999999988899999999999999999999 66654 5567778889999999


Q ss_pred             CCCCCC
Q 048006          770 LCGLPL  775 (833)
Q Consensus       770 lc~~~~  775 (833)
                      .|+|.+
T Consensus       208 ~CdC~~  213 (266)
T d1p9ag_         208 LCNCEI  213 (266)
T ss_dssp             CCSGGG
T ss_pred             CCCcch
Confidence            999863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=4.7e-17  Score=172.24  Aligned_cols=54  Identities=22%  Similarity=0.253  Sum_probs=41.3

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCC
Q 048006           87 HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLF  149 (833)
Q Consensus        87 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~  149 (833)
                      .++++|||++++++  .+|+.   .++|++|+|++|+|+ .+|..+   .+|++|++++|.+.
T Consensus        38 ~~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~   91 (353)
T d1jl5a_          38 RQAHELELNNLGLS--SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK   91 (353)
T ss_dssp             HTCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS
T ss_pred             cCCCEEEeCCCCCC--CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc
Confidence            36889999999988  47764   568899999999988 677654   46777777777664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=5.4e-17  Score=171.75  Aligned_cols=96  Identities=23%  Similarity=0.317  Sum_probs=65.5

Q ss_pred             cEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCcccc
Q 048006           59 HVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRL  138 (833)
Q Consensus        59 ~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  138 (833)
                      ++++|||++     +.++ .+|+.   .++|++|+|++|+++  .+|+.   +.+|+.|++++|.++ .++. +  .+.|
T Consensus        39 ~l~~LdLs~-----~~L~-~lp~~---~~~L~~L~Ls~N~l~--~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L  100 (353)
T d1jl5a_          39 QAHELELNN-----LGLS-SLPEL---PPHLESLVASCNSLT--ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLL  100 (353)
T ss_dssp             TCSEEECTT-----SCCS-CCCSC---CTTCSEEECCSSCCS--SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTC
T ss_pred             CCCEEEeCC-----CCCC-CCCCC---CCCCCEEECCCCCCc--ccccc---hhhhhhhhhhhcccc-hhhh-h--cccc
Confidence            467899998     5565 35543   468999999999998  47765   458899999999887 3442 1  1358


Q ss_pred             ceecccCccCCCCCCcccccCCCCCcEEecCCCCCCC
Q 048006          139 QHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLAN  175 (833)
Q Consensus       139 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~  175 (833)
                      ++|++++|.+..   .+.++.+++|++|+++++.+..
T Consensus       101 ~~L~L~~n~l~~---lp~~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         101 EYLGVSNNQLEK---LPELQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CEEECCSSCCSS---CCCCTTCTTCCEEECCSSCCSC
T ss_pred             cccccccccccc---ccchhhhccceeeccccccccc
Confidence            888888887743   2234556666666666655544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.6e-20  Score=205.55  Aligned_cols=60  Identities=23%  Similarity=0.248  Sum_probs=29.5

Q ss_pred             CcEEEccCcccccc-ccccccCCCCCcEEECcCCcccc----cccccccCCCCCcEEEccCCCCC
Q 048006          241 FISIDLGFNQLQGS-IPESFQHMVYLEHLRLSFNELEG----GIPKFFGNMCSLITLNLSNNKLS  300 (833)
Q Consensus       241 L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~  300 (833)
                      |+.||+++|++++. +.+.+..++++++|+|++|.++.    .++..+..+++|++|+|++|+++
T Consensus         4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            44444444444432 12223445555566666665542    22333455556666666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.4e-21  Score=213.96  Aligned_cols=113  Identities=21%  Similarity=0.238  Sum_probs=70.2

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCC----CCCcccCCccccceecccCccCCCCCCc---cccc-C
Q 048006           88 DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAG----PIPPQLGNLSRLQHLDLGSNYLFSTGNL---DWLS-H  159 (833)
Q Consensus        88 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~~~~~~~~---~~l~-~  159 (833)
                      +|++||++++++++..+.+.+..++++++|+|++|.++.    .++..+..+++|++|||++|.+...+..   ..+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            467777777777764445556667777777777777652    2334456677777777777765321100   1111 2


Q ss_pred             CCCCcEEecCCCCCCCC--chhHHhhcCCCCCCEEEccCCCCC
Q 048006          160 LSYLRYLNLDESNLANS--SDWFQVIGKLHSLKTLSLHSCYLP  200 (833)
Q Consensus       160 l~~L~~L~Ls~n~~~~~--~~~~~~l~~l~~L~~L~Ls~n~l~  200 (833)
                      ..+|++|++++|.+++.  ..++..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            34677777777777653  234556677777777777777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.5e-17  Score=163.70  Aligned_cols=189  Identities=21%  Similarity=0.288  Sum_probs=102.4

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCC
Q 048006           83 LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY  162 (833)
Q Consensus        83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  162 (833)
                      +..+++|++|++.+|+++.  + +.+..+++|++|++++|.+.+..|  +.++++|+++++++|.+.   ..+.++++++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~---~i~~l~~l~~  108 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK---NVSAIAGLQS  108 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS---CCGGGTTCTT
T ss_pred             HHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc---cccccccccc
Confidence            4456667777777777763  4 346677777777777777664332  666777777777776653   3345666666


Q ss_pred             CcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCc
Q 048006          163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI  242 (833)
Q Consensus       163 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~  242 (833)
                      |++++++++...+.    ..+...+.++.+.++.+.+....+     ...+++|+.|++++|.+.+.  ..+.++++ |+
T Consensus       109 L~~l~l~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~n~~~~~--~~l~~l~~-L~  176 (227)
T d1h6ua2         109 IKTLDLTSTQITDV----TPLAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDL--TPLANLSK-LT  176 (227)
T ss_dssp             CCEEECTTSCCCCC----GGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCC--GGGTTCTT-CC
T ss_pred             cccccccccccccc----chhccccchhhhhchhhhhchhhh-----hccccccccccccccccccc--hhhccccc-ce
Confidence            66666666666553    224455666666666665544322     11125555666555555432  12344444 45


Q ss_pred             EEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEcc
Q 048006          243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLS  295 (833)
Q Consensus       243 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  295 (833)
                      +|++++|++++. + .++++++|++|++++|++++..  .++++++|++|+++
T Consensus       177 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         177 TLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             EEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            555555544432 1 2444455555555555444321  14444455554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3.3e-17  Score=161.19  Aligned_cols=193  Identities=24%  Similarity=0.319  Sum_probs=136.6

Q ss_pred             CCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcE
Q 048006           86 LHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRY  165 (833)
Q Consensus        86 l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  165 (833)
                      ++.+..++++.+++++.   ..+..+.+|++|++++|.++. ++ .+.++++|++|++++|.+..   ...+.++++|++
T Consensus        18 l~~~~~~~l~~~~~~d~---~~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~---~~~l~~l~~l~~   89 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD---LAPLKNLTKITE   89 (227)
T ss_dssp             HHHHHHHHTTCSSTTSE---ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC---CGGGTTCCSCCE
T ss_pred             HHHHHHHHhCCCCcCCc---CCHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeec---cccccccccccc
Confidence            33444567777877754   245678899999999999984 54 58999999999999998853   445899999999


Q ss_pred             EecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEE
Q 048006          166 LNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISID  245 (833)
Q Consensus       166 L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~  245 (833)
                      +++++|.++.+    ..+.++++|+.++++++...+..+     ....+.++.+.++++.+...  ..+...++ +++|+
T Consensus        90 l~~~~n~~~~i----~~l~~l~~L~~l~l~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~--~~~~~~~~-L~~L~  157 (227)
T d1h6ua2          90 LELSGNPLKNV----SAIAGLQSIKTLDLTSTQITDVTP-----LAGLSNLQVLYLDLNQITNI--SPLAGLTN-LQYLS  157 (227)
T ss_dssp             EECCSCCCSCC----GGGTTCTTCCEEECTTSCCCCCGG-----GTTCTTCCEEECCSSCCCCC--GGGGGCTT-CCEEE
T ss_pred             ccccccccccc----ccccccccccccccccccccccch-----hccccchhhhhchhhhhchh--hhhccccc-ccccc
Confidence            99999998875    357789999999999888766532     22237778888877776543  23445555 67777


Q ss_pred             ccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCch
Q 048006          246 LGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQ  302 (833)
Q Consensus       246 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  302 (833)
                      +++|.+++.  ..++++++|++|++++|++++. + .++++++|++|++++|++++.
T Consensus       158 l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         158 IGNAQVSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             ccccccccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC
Confidence            777766643  2366667777777777766642 2 266666677777766666643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2e-17  Score=164.86  Aligned_cols=77  Identities=18%  Similarity=0.109  Sum_probs=42.8

Q ss_pred             cEEEccCCcCCCCCchhhhcccCCcEE-ECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECc
Q 048006          665 KSLELSNNNLNGAVPEEIMDLVGLVAL-NLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS  742 (833)
Q Consensus       665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  742 (833)
                      +.|++++|+++. ++.......+++++ ++++|+++...+..|.++++|+.|+|++|+++...+..|.+++.|+++++.
T Consensus       156 ~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         156 VILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             eeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            556666666653 33333333443333 455666664444456667777777777777765445556666555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.8e-17  Score=163.75  Aligned_cols=200  Identities=19%  Similarity=0.163  Sum_probs=102.5

Q ss_pred             CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccC-CCCccCcCCccEEEccc-CcCccccCccccCCCCCcEe
Q 048006          485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRI-PDSMGFLQNIQTLSLHN-NRLTGELSSSFRNCSQLRLL  562 (833)
Q Consensus       485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  562 (833)
                      +++++|++++|+++...+..|.++++|++|++++|.+...+ +..|..++.++++.+.. |++....+..|.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            35666666666665444445666666666666666555432 33455566666665543 45555555556666666666


Q ss_pred             ccCCCccCCCCCc-chhhcCCccceEEecCCcccccccccccCCC-CCCEEeccCCcCcccCCccccccccccccCCCCc
Q 048006          563 DLGKNALYGEIPT-WMGESLSNLIVLSLKSNKFHGKIPFQLCQLA-FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDP  640 (833)
Q Consensus       563 ~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  640 (833)
                      ++++|++. ..+. .....+..+..+...++.+....+..+.+++ .++.|++++|+++...+..|. ...+        
T Consensus       109 ~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l--------  178 (242)
T d1xwdc1         109 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQL--------  178 (242)
T ss_dssp             EEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCE--------
T ss_pred             ccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhh--------
Confidence            66666654 2322 1122334444444555555544444444443 455566666666533222221 1111        


Q ss_pred             ccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeC
Q 048006          641 TIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDL  717 (833)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  717 (833)
                                             .+.+++++|+++...+..|.++++|++|+|++|+|+...+..|.+++.|+.+++
T Consensus       179 -----------------------~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         179 -----------------------DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             -----------------------EEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             -----------------------hccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence                                   123345555665333344566666666666666666443444555555555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=1e-17  Score=159.75  Aligned_cols=87  Identities=25%  Similarity=0.349  Sum_probs=48.2

Q ss_pred             cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006          665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN  744 (833)
Q Consensus       665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  744 (833)
                      +.|+|++|++.+..+..+..+++|++|+|++|+|++..|.+|.++++|++|+|++|+|++..|..|..+++|++|++++|
T Consensus        57 ~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             eeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            44555555555445555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCccCCC
Q 048006          745 NLSGKIP  751 (833)
Q Consensus       745 ~l~g~ip  751 (833)
                      ++.+.++
T Consensus       137 ~~~~~~~  143 (192)
T d1w8aa_         137 PFNCNCH  143 (192)
T ss_dssp             CBCCSGG
T ss_pred             ccccccc
Confidence            5555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=6.4e-17  Score=154.18  Aligned_cols=173  Identities=19%  Similarity=0.169  Sum_probs=136.8

Q ss_pred             CceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcc
Q 048006          442 PGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSF  521 (833)
Q Consensus       442 ~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  521 (833)
                      ..++.+++.++......+.+++.|++++|++++.++...+..+++|++|++++|.+....+..|..+++|++|+|++|++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            35566666666554445678888999999888777666655678999999999999988889999999999999999999


Q ss_pred             cccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccccccc
Q 048006          522 SGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ  601 (833)
Q Consensus       522 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~  601 (833)
                      +...+.+|.++++|++|+|++|+|+++.+..|..+++|++|+|++|++....+...+  ...++.+.+..+.+....|..
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~~p~~  168 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAPSK  168 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBCSSTT
T ss_pred             cccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeCCChh
Confidence            988888899999999999999999988888999999999999999998744333222  234666777777777666644


Q ss_pred             ccCCCCCCEEeccCCcCc
Q 048006          602 LCQLAFLQVLDLSLNNIS  619 (833)
Q Consensus       602 l~~l~~L~~L~Ls~N~l~  619 (833)
                         +..++.++|+.|.+.
T Consensus       169 ---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         169 ---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             ---TTTSBGGGSCTTTCC
T ss_pred             ---hcCCEeeecCHhhCc
Confidence               455667788888775

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.3e-16  Score=151.45  Aligned_cols=165  Identities=24%  Similarity=0.317  Sum_probs=90.3

Q ss_pred             CCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcE
Q 048006           86 LHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRY  165 (833)
Q Consensus        86 l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  165 (833)
                      +..|++|++++|.++..  + .+..+++|++|+|++|.+++ ++ .++.+++|++|++++|.+.   .++.+.++++|++
T Consensus        45 L~~L~~L~l~~~~i~~l--~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~---~l~~l~~l~~L~~  116 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK---DLSSLKDLKKLKS  116 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC---CGGGGTTCTTCCE
T ss_pred             hcCccEEECcCCCCCCc--h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc---ccccccccccccc
Confidence            34555555555555532  2 24455555555555555543 22 2445555555555555442   1223444444444


Q ss_pred             EecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEE
Q 048006          166 LNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISID  245 (833)
Q Consensus       166 L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~  245 (833)
                      |++++|.+...    ..+..+                           ++++.+++++|.+++  +..+..+++ |+.++
T Consensus       117 L~l~~~~~~~~----~~l~~l---------------------------~~l~~l~~~~n~l~~--~~~~~~l~~-L~~l~  162 (210)
T d1h6ta2         117 LSLEHNGISDI----NGLVHL---------------------------PQLESLYLGNNKITD--ITVLSRLTK-LDTLS  162 (210)
T ss_dssp             EECTTSCCCCC----GGGGGC---------------------------TTCCEEECCSSCCCC--CGGGGGCTT-CSEEE
T ss_pred             ccccccccccc----cccccc---------------------------ccccccccccccccc--ccccccccc-ccccc
Confidence            44444444332    123333                           555555555555543  223444555 66667


Q ss_pred             ccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccC
Q 048006          246 LGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSN  296 (833)
Q Consensus       246 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  296 (833)
                      +++|++++..  .+.++++|++|++++|+++. ++ .+..+++|++|+|++
T Consensus       163 l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         163 LEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            7777666432  37778888888888888874 34 478888888888864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.1e-16  Score=150.75  Aligned_cols=165  Identities=21%  Similarity=0.256  Sum_probs=110.3

Q ss_pred             CCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCC
Q 048006          111 LSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLK  190 (833)
Q Consensus       111 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~  190 (833)
                      +.+|++|++++|.+.+ ++ .+..+++|++|++++|.+                         ++++    .++.+++|+
T Consensus        45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i-------------------------~~l~----~~~~l~~L~   93 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKL-------------------------TDIK----PLANLKNLG   93 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCC-------------------------CCCG----GGTTCTTCC
T ss_pred             hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccc-------------------------cCcc----ccccCcccc
Confidence            4556666666666553 22 255555555555555554                         3321    234445555


Q ss_pred             EEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEEC
Q 048006          191 TLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRL  270 (833)
Q Consensus       191 ~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  270 (833)
                      +|++++|++++. |   . ...+++|+.|++++|.+..  ...+..++. ++.+++++|.+++.  ..+..+++|+++++
T Consensus        94 ~L~l~~n~i~~l-~---~-l~~l~~L~~L~l~~~~~~~--~~~l~~l~~-l~~l~~~~n~l~~~--~~~~~l~~L~~l~l  163 (210)
T d1h6ta2          94 WLFLDENKVKDL-S---S-LKDLKKLKSLSLEHNGISD--INGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLSL  163 (210)
T ss_dssp             EEECCSSCCCCG-G---G-GTTCTTCCEEECTTSCCCC--CGGGGGCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             cccccccccccc-c---c-ccccccccccccccccccc--ccccccccc-cccccccccccccc--cccccccccccccc
Confidence            555555544432 1   1 1222666666666666543  245667777 99999999999864  46788999999999


Q ss_pred             cCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEccc
Q 048006          271 SFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLEN  326 (833)
Q Consensus       271 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~  326 (833)
                      ++|++++. + .+.++++|++|++++|+++.. + .+..++      +|+.|+|++
T Consensus       164 ~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~------~L~~L~Ls~  209 (210)
T d1h6ta2         164 EDNQISDI-V-PLAGLTKLQNLYLSKNHISDL-R-ALAGLK------NLDVLELFS  209 (210)
T ss_dssp             CSSCCCCC-G-GGTTCTTCCEEECCSSCCCBC-G-GGTTCT------TCSEEEEEE
T ss_pred             cccccccc-c-cccCCCCCCEEECCCCCCCCC-h-hhcCCC------CCCEEEccC
Confidence            99999864 3 388999999999999999864 4 488888      999999854

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.5e-16  Score=148.03  Aligned_cols=162  Identities=22%  Similarity=0.342  Sum_probs=91.2

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCc
Q 048006           85 KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLR  164 (833)
Q Consensus        85 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  164 (833)
                      .+.++++|+++++.++.  + +.+..+++|++|++++|++++..|  ++++++|++|++++|.+.   ..+.++++++|+
T Consensus        38 ~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC---CCGGGTTCTTCS
T ss_pred             HhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc---cccccccccccc
Confidence            44556666666666653  2 235556666666666666654222  556666666666665542   222344555555


Q ss_pred             EEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEE
Q 048006          165 YLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISI  244 (833)
Q Consensus       165 ~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L  244 (833)
                      +|+++++.....    ..+..+                           ++|+.|++++|++..  .+.+...++ ++.|
T Consensus       110 ~L~l~~~~~~~~----~~~~~l---------------------------~~L~~L~l~~n~l~~--~~~l~~~~~-L~~L  155 (199)
T d2omxa2         110 GLTLFNNQITDI----DPLKNL---------------------------TNLNRLELSSNTISD--ISALSGLTS-LQQL  155 (199)
T ss_dssp             EEECCSSCCCCC----GGGTTC---------------------------TTCSEEECCSSCCCC--CGGGTTCTT-CSEE
T ss_pred             cccccccccccc----cccchh---------------------------hhhHHhhhhhhhhcc--ccccccccc-cccc
Confidence            555555544432    123344                           445555555554432  123444444 6666


Q ss_pred             EccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEE
Q 048006          245 DLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITL  292 (833)
Q Consensus       245 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  292 (833)
                      ++++|++++.  +.++++++|++|++++|++++ ++ .++.+++|++|
T Consensus       156 ~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         156 NFSSNQVTDL--KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ccccccccCC--ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            6666666643  247788888888888888875 33 47778888775

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.1e-15  Score=146.45  Aligned_cols=177  Identities=22%  Similarity=0.311  Sum_probs=115.1

Q ss_pred             EeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCC
Q 048006           92 LNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDES  171 (833)
Q Consensus        92 L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n  171 (833)
                      +.++.+.+++. +  ....+.++++|++++|.+.. ++ .+..+++|++|++++|.+..   ...++++++|++|++++|
T Consensus        23 ~~l~~~~~~~~-~--~~~~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~---~~~l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          23 TVLGKTNVTDT-V--SQTDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHTTCSSTTSE-E--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC---CGGGTTCTTCCEEECCSS
T ss_pred             HHhCCCCCCCc-c--CHHHhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccC---cccccCCccccccccccc
Confidence            34555555542 1  22345666777777766653 32 35566666666666665532   222445555555555555


Q ss_pred             CCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccc
Q 048006          172 NLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQL  251 (833)
Q Consensus       172 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l  251 (833)
                      .+..++    .++++                           ++|+.|++++|.....  ..+..+++ |+.|++++|++
T Consensus        95 ~~~~~~----~l~~l---------------------------~~L~~L~l~~~~~~~~--~~~~~l~~-L~~L~l~~n~l  140 (199)
T d2omxa2          95 QIADIT----PLANL---------------------------TNLTGLTLFNNQITDI--DPLKNLTN-LNRLELSSNTI  140 (199)
T ss_dssp             CCCCCG----GGTTC---------------------------TTCSEEECCSSCCCCC--GGGTTCTT-CSEEECCSSCC
T ss_pred             cccccc----ccccc---------------------------cccccccccccccccc--cccchhhh-hHHhhhhhhhh
Confidence            444321    13333                           5566666666555432  23566677 99999999999


Q ss_pred             cccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEE
Q 048006          252 QGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSL  322 (833)
Q Consensus       252 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L  322 (833)
                      ...  +.+..+++|++|++.+|++++..  .++++++|++|++++|++++. + .++.++      +|++|
T Consensus       141 ~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~------~L~~L  199 (199)
T d2omxa2         141 SDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI-S-VLAKLT------NLESL  199 (199)
T ss_dssp             CCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCT------TCSEE
T ss_pred             ccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC-c-cccCCC------CCCcC
Confidence            853  46889999999999999998643  488999999999999999874 3 477887      78775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.6e-16  Score=159.94  Aligned_cols=195  Identities=23%  Similarity=0.268  Sum_probs=91.5

Q ss_pred             CCCCEEEccCCCCCCC-CCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCC-CCCCchhHHhhcCCCCC
Q 048006          112 SKLRYLDLFGTVFAGP-IPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESN-LANSSDWFQVIGKLHSL  189 (833)
Q Consensus       112 ~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~l~~l~~L  189 (833)
                      .+|++|||+++.+.+. ++..+.++++|++|++++|.+.. ..+..++++++|++|+++++. +++ ..+......+++|
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~Ls~c~~itd-~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCc-HHHHHHhcCCCCcCccccccccccc-cccchhhHHHHhc
Confidence            3444445444444321 22223444445555554444321 222334444555555554432 221 1222223445555


Q ss_pred             CEEEccCCC-CCCC-CCccccccccCCCCCEEEccCC--cCCCCCCCc-ccccccCCcEEEccCc-cccccccccccCCC
Q 048006          190 KTLSLHSCY-LPPV-IPLSLNHLNSSTSLETLVLSDN--NLTSSIYPW-LPNISSIFISIDLGFN-QLQGSIPESFQHMV  263 (833)
Q Consensus       190 ~~L~Ls~n~-l~~~-~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~-l~~l~~~L~~L~Ls~n-~l~~~~p~~~~~l~  263 (833)
                      ++|++++|. +++. +..  ......++|+.|+++++  .++...... ...+++ |++|++++| .+++.....+..++
T Consensus       124 ~~L~ls~c~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~-L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQV--AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN-LVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             CEEECCCCTTCCHHHHHH--HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT-CSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             cccccccccccccccchh--hhcccccccchhhhccccccccccccccccccccc-ccccccccccCCCchhhhhhcccC
Confidence            555555542 2111 000  11122245566665543  222211111 123444 666666664 35555556677777


Q ss_pred             CCcEEECcCC-cccccccccccCCCCCcEEEccCCCCCchhhHHHhhcC
Q 048006          264 YLEHLRLSFN-ELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLS  311 (833)
Q Consensus       264 ~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  311 (833)
                      +|++|++++| .+++.....++++++|++|+++++--.+.++.....++
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp  249 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP  249 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHST
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCc
Confidence            7777777774 56655556677777788888777632233333334444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.7e-15  Score=153.79  Aligned_cols=58  Identities=29%  Similarity=0.389  Sum_probs=25.3

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccC
Q 048006           88 DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGS  145 (833)
Q Consensus        88 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  145 (833)
                      .|++||++++.++...++..+..+++|++|+|++|.+.+..+..+.++++|++|++++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            4444444444443322333344444444444444444433334444444444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=3.2e-14  Score=123.59  Aligned_cols=104  Identities=27%  Similarity=0.292  Sum_probs=66.6

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecC
Q 048006           90 RHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLD  169 (833)
Q Consensus        90 ~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  169 (833)
                      |+|+|++|+++.  ++ .++.+++|++|++++|.++ .+|..++.+++|++|++++|.+..   .+.++++++|++|+++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~---l~~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN---VDGVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC---CGGGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc---cCccccccccCeEECC
Confidence            567777777763  43 3667777777777777776 466667777777777777777643   3446666777777777


Q ss_pred             CCCCCCCchhHHhhcCCCCCCEEEccCCCCCC
Q 048006          170 ESNLANSSDWFQVIGKLHSLKTLSLHSCYLPP  201 (833)
Q Consensus       170 ~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  201 (833)
                      +|++++.+.+ ..++.+++|++|++++|.+..
T Consensus        74 ~N~i~~~~~~-~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          74 NNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSCCCSSSTT-GGGGGCTTCCEEECTTSGGGG
T ss_pred             CCccCCCCCc-hhhcCCCCCCEEECCCCcCCc
Confidence            7766655332 345666666666666666543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=8.9e-14  Score=120.73  Aligned_cols=120  Identities=26%  Similarity=0.315  Sum_probs=99.3

Q ss_pred             EEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCcccccee
Q 048006           62 LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL  141 (833)
Q Consensus        62 ~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  141 (833)
                      .|+|++     +.++ .++ .+..+++|++|++++|+++  .+|+.++.+++|++|++++|.+++ +| .+.++++|++|
T Consensus         2 ~L~Ls~-----n~l~-~l~-~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L   70 (124)
T d1dcea3           2 VLHLAH-----KDLT-VLC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL   70 (124)
T ss_dssp             EEECTT-----SCCS-SCC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE
T ss_pred             EEEcCC-----CCCC-CCc-ccccCCCCCEEECCCCccC--cchhhhhhhhcccccccccccccc-cC-ccccccccCeE
Confidence            588888     6665 333 5899999999999999998  478889999999999999999984 55 59999999999


Q ss_pred             cccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHh-hcCCCCCCEE
Q 048006          142 DLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQV-IGKLHSLKTL  192 (833)
Q Consensus       142 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-l~~l~~L~~L  192 (833)
                      ++++|.+.....+..++.+++|++|++++|.++..+.++.. ...+|+|+.|
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99999998766667889999999999999999776444333 3446777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=5.1e-15  Score=155.44  Aligned_cols=239  Identities=15%  Similarity=0.151  Sum_probs=144.9

Q ss_pred             CCcccEEEcCCCcCcCC----CCCcccCCCCCcEEEccCCccccc----------CCCCccCcCCccEEEcccCcCccc-
Q 048006          484 GSKLTYVDLSSNLLSGK----LPDCWWTFDSLVILNLENNSFSGR----------IPDSMGFLQNIQTLSLHNNRLTGE-  548 (833)
Q Consensus       484 ~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~L~~n~l~~~-  548 (833)
                      ...+++|++++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++|.+... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            35677777777766432    222345566777777776643311          112234566777777777777643 


Q ss_pred             ---cCccccCCCCCcEeccCCCccCCCCCcch------------hhcCCccceEEecCCccccc----ccccccCCCCCC
Q 048006          549 ---LSSSFRNCSQLRLLDLGKNALYGEIPTWM------------GESLSNLIVLSLKSNKFHGK----IPFQLCQLAFLQ  609 (833)
Q Consensus       549 ---~~~~~~~l~~L~~L~L~~n~l~~~~p~~~------------~~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~  609 (833)
                         +...+..+++|++|++++|.+...-...+            ....+.|+.+++++|.+...    +...+...+.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               23344566777888887776542111111            12356777888888776522    233345667788


Q ss_pred             EEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCC----Cchhhhcc
Q 048006          610 VLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGA----VPEEIMDL  685 (833)
Q Consensus       610 ~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~l~~l  685 (833)
                      .|++++|.+.......+                           ........+.|+.|+|++|.++..    +...+..+
T Consensus       190 ~L~L~~n~i~~~g~~~~---------------------------l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~  242 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHL---------------------------LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  242 (344)
T ss_dssp             EEECCSSCCCHHHHHHH---------------------------HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             ccccccccccccccccc---------------------------hhhhhcchhhhccccccccccccccccccccccccc
Confidence            88888887753210000                           001122345568899999887643    34556778


Q ss_pred             cCCcEEECCCccccccCCccc----C--CCCCCCEEeCCCCcCccc----CCcccc-CCCCCCEEECcCCcCccC
Q 048006          686 VGLVALNLSKNHLTGQISPKI----G--QLKSLDFLDLSRNQLVGG----IPSSLS-QLSGLSVMDLSYNNLSGK  749 (833)
Q Consensus       686 ~~L~~L~Ls~N~l~~~~p~~l----~--~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~ls~N~l~g~  749 (833)
                      ++|++|+|++|.|++.....+    .  ..+.|++||+++|+|+..    +...+. +.+.|++|++++|++...
T Consensus       243 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            889999999999875433333    2  246799999999998753    233342 567899999999998653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.7e-13  Score=125.36  Aligned_cols=63  Identities=22%  Similarity=0.253  Sum_probs=30.2

Q ss_pred             ccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc
Q 048006          553 FRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS  619 (833)
Q Consensus       553 ~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  619 (833)
                      |.++.++++|+|++|+|+ .+|.. +..+++|+.|++++|+++.. + .+..+++|++|++++|+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~-~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~   76 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENL-GATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRIC   76 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCG-GGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCcc-ccccccCCEEECCCCCCCcc-C-CcccCcchhhhhccccccc
Confidence            344445555555555554 44432 22345555555555555422 1 2444555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2e-13  Score=124.75  Aligned_cols=125  Identities=22%  Similarity=0.220  Sum_probs=90.4

Q ss_pred             CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006          484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD  563 (833)
Q Consensus       484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  563 (833)
                      ..++++|++++|+|+.. +..+..+++|+.|++++|+++..  +.+..+++|++|++++|+++...+..+..+++|++|+
T Consensus        17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            36788888888888744 56667788888888888888754  3477788888888888888866666667788888888


Q ss_pred             cCCCccCCCCCc-chhhcCCccceEEecCCcccccc---cccccCCCCCCEEe
Q 048006          564 LGKNALYGEIPT-WMGESLSNLIVLSLKSNKFHGKI---PFQLCQLAFLQVLD  612 (833)
Q Consensus       564 L~~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~l~~L~~L~  612 (833)
                      +++|++. .++. .....+++|++|++++|+++...   +..+..+++|++||
T Consensus        94 L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            8888886 4543 22235778888888888776322   12456677787776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=3.1e-14  Score=149.31  Aligned_cols=207  Identities=18%  Similarity=0.182  Sum_probs=98.5

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCC---CccccccCCCCCCEEEccCCCCCCC---CC-------cccCCccccceecccC
Q 048006           79 ISPALLKLHDLRHLNLSFNDFSGS---PIPEFIGSLSKLRYLDLFGTVFAGP---IP-------PQLGNLSRLQHLDLGS  145 (833)
Q Consensus        79 ~~~~l~~l~~L~~L~Ls~n~~~~~---~~p~~~~~l~~L~~L~Ls~n~l~~~---~p-------~~~~~l~~L~~L~Ls~  145 (833)
                      +..++.+.+.|++|+|++|.+...   .+...+...++|+.|+++++.....   .|       ..+..+++|++|+|++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            344567778888888888877542   1334466778888888887654321   11       2233455566666666


Q ss_pred             ccCCCCCCc---ccccCCCCCcEEecCCCCCCCCc--hhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEE
Q 048006          146 NYLFSTGNL---DWLSHLSYLRYLNLDESNLANSS--DWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLV  220 (833)
Q Consensus       146 n~~~~~~~~---~~l~~l~~L~~L~Ls~n~~~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~  220 (833)
                      |.+......   ..+...++|++|++++|.+....  .+...+..+                ...  ......+.|+.++
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~----------------~~~--~~~~~~~~L~~l~  164 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL----------------AVN--KKAKNAPPLRSII  164 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH----------------HHH--HHHHTCCCCCEEE
T ss_pred             cccccccccchhhhhcccccchheeccccccccccccccccccccc----------------ccc--cccccCcccceee
Confidence            655321110   12233444555555544432210  000000000                000  0001124455555


Q ss_pred             ccCCcCCCCCC----CcccccccCCcEEEccCcccccc-----ccccccCCCCCcEEECcCCccccc----ccccccCCC
Q 048006          221 LSDNNLTSSIY----PWLPNISSIFISIDLGFNQLQGS-----IPESFQHMVYLEHLRLSFNELEGG----IPKFFGNMC  287 (833)
Q Consensus       221 Ls~n~l~~~~~----~~l~~l~~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~  287 (833)
                      +++|.+.....    ..+..... ++.|++++|.++..     +...+..+++|++|++++|.++..    +...+..++
T Consensus       165 l~~n~i~~~~~~~l~~~l~~~~~-L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~  243 (344)
T d2ca6a1         165 CGRNRLENGSMKEWAKTFQSHRL-LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  243 (344)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTT-CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             cccccccccccccccchhhhhhh-hcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccc
Confidence            55554432111    11222333 55555555555421     223345566666666666665432    233455666


Q ss_pred             CCcEEEccCCCCCchhh
Q 048006          288 SLITLNLSNNKLSGQLS  304 (833)
Q Consensus       288 ~L~~L~Ls~n~l~~~~~  304 (833)
                      +|++|++++|.+++...
T Consensus       244 ~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         244 NLRELGLNDCLLSARGA  260 (344)
T ss_dssp             TCCEEECTTCCCCHHHH
T ss_pred             cchhhhhhcCccCchhh
Confidence            66677776666665433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.4e-13  Score=120.54  Aligned_cols=109  Identities=20%  Similarity=0.216  Sum_probs=83.9

Q ss_pred             cEEEccCCcCCCCCchhhhcccCCcEEECCCcc-ccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006          665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNH-LTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY  743 (833)
Q Consensus       665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  743 (833)
                      +.++.+++.+. ..|..+..+++|++|++++|+ ++...+.+|.++++|+.|+|++|+|+...|.+|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            56788888877 567778888888888887664 7766667788888888888888888877788888888888888888


Q ss_pred             CcCccCCCCccccCccccccccCCCCCCCCC
Q 048006          744 NNLSGKIPTVTQLQSFNDTVYAGNPELCGLP  774 (833)
Q Consensus       744 N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~  774 (833)
                      |+|+...+.......+..+.+.|||+.|+|.
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCCcccChhhhccccccccccCCCcccCCch
Confidence            8888544443333456677788888888775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=1.9e-13  Score=129.75  Aligned_cols=130  Identities=26%  Similarity=0.311  Sum_probs=79.5

Q ss_pred             CCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeecc
Q 048006          573 IPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKG  652 (833)
Q Consensus       573 ~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  652 (833)
                      +|..+. .+++|++|+|++|+++. ++ .+..+++|+.|++++|+++ .+|..+..++                      
T Consensus        40 l~~sl~-~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~----------------------   93 (198)
T d1m9la_          40 MDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD----------------------   93 (198)
T ss_dssp             CHHHHH-HTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHH----------------------
T ss_pred             hhhHHh-cccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccc----------------------
Confidence            333443 46666666666666653 32 3566667777777777665 3333222222                      


Q ss_pred             CcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCC-cccCCCCCCCEEeCCCCcCcccCCcc--
Q 048006          653 SEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQIS-PKIGQLKSLDFLDLSRNQLVGGIPSS--  729 (833)
Q Consensus       653 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~--  729 (833)
                                .|+.|++++|+++. + +.+..+++|++|++++|+++.... ..+..+++|+.|+|++|++....+..  
T Consensus        94 ----------~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  161 (198)
T d1m9la_          94 ----------TLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA  161 (198)
T ss_dssp             ----------HCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTT
T ss_pred             ----------cccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccc
Confidence                      23777777777763 2 346777778888888887764322 35677778888888888776544332  


Q ss_pred             --------ccCCCCCCEEE
Q 048006          730 --------LSQLSGLSVMD  740 (833)
Q Consensus       730 --------l~~l~~L~~L~  740 (833)
                              +..+++|+.||
T Consensus       162 ~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         162 TSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHHHHCSSCCEES
T ss_pred             hhhHHHHHHHHCCCcCEeC
Confidence                    45567777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.2e-11  Score=110.16  Aligned_cols=86  Identities=23%  Similarity=0.141  Sum_probs=72.8

Q ss_pred             ccEEEccCC-cCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECc
Q 048006          664 VKSLELSNN-NLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS  742 (833)
Q Consensus       664 L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  742 (833)
                      +++|++++| .++...+..|.++++|+.|+|++|+|++..|.+|..+++|++|+|++|+|+...+..+..+ .|+.|+|+
T Consensus        33 l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~  111 (156)
T d2ifga3          33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLS  111 (156)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECC
T ss_pred             cCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccccC
Confidence            378888766 4776667789999999999999999998888999999999999999999996555556554 69999999


Q ss_pred             CCcCccCC
Q 048006          743 YNNLSGKI  750 (833)
Q Consensus       743 ~N~l~g~i  750 (833)
                      +|++.+.+
T Consensus       112 ~Np~~C~C  119 (156)
T d2ifga3         112 GNPLHCSC  119 (156)
T ss_dssp             SSCCCCCG
T ss_pred             CCcccCCc
Confidence            99998755

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=4.5e-13  Score=127.06  Aligned_cols=132  Identities=23%  Similarity=0.269  Sum_probs=68.8

Q ss_pred             cccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccccc
Q 048006          552 SFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTA  631 (833)
Q Consensus       552 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  631 (833)
                      .+..+++|++|++++|+|+ .++. +. .+++|++|++++|.++ .+|.....+++|+.|++++|+++..  ..+..+++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~-~i~~-l~-~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIE-KISS-LS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             HHHHTTTCCEEECSEEEES-CCCC-HH-HHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             HHhcccccceeECcccCCC-Cccc-cc-CCccccChhhcccccc-ccccccccccccccccccccccccc--cccccccc
Confidence            3444455555555555554 3432 22 3455555555555554 2333333334555666666655421  12333333


Q ss_pred             ccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCc-hhhhcccCCcEEECCCccccccCCcc-----
Q 048006          632 MTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP-EEIMDLVGLVALNLSKNHLTGQISPK-----  705 (833)
Q Consensus       632 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~-----  705 (833)
                      |                                +.|++++|+++.... ..+..+++|+.|+|++|.+....+..     
T Consensus       117 L--------------------------------~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~  164 (198)
T d1m9la_         117 L--------------------------------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE  164 (198)
T ss_dssp             S--------------------------------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHH
T ss_pred             c--------------------------------cccccccchhccccccccccCCCccceeecCCCccccCcccccchhh
Confidence            3                                666666666653211 35667777777777777776444332     


Q ss_pred             -----cCCCCCCCEEeCCCCcCc
Q 048006          706 -----IGQLKSLDFLDLSRNQLV  723 (833)
Q Consensus       706 -----l~~l~~L~~L~Ls~N~l~  723 (833)
                           +..+++|+.||  +..++
T Consensus       165 ~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         165 YRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHHCSSCCEES--SGGGT
T ss_pred             HHHHHHHHCCCcCEeC--CccCC
Confidence                 45677888876  44444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.3e-08  Score=89.47  Aligned_cols=79  Identities=27%  Similarity=0.187  Sum_probs=43.6

Q ss_pred             CcccEEEccCCcCCCC--CchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCc-------cccC
Q 048006          662 GLVKSLELSNNNLNGA--VPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPS-------SLSQ  732 (833)
Q Consensus       662 ~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-------~l~~  732 (833)
                      +.|++|+|++|+|+..  ++..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|++......       .+..
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            3445555555555532  233455666667777777766643332333344567777777776654332       1445


Q ss_pred             CCCCCEEE
Q 048006          733 LSGLSVMD  740 (833)
Q Consensus       733 l~~L~~L~  740 (833)
                      +|+|++||
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            66676665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=8.7e-08  Score=86.64  Aligned_cols=54  Identities=26%  Similarity=0.215  Sum_probs=32.3

Q ss_pred             cccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCc-------ccCCCCCCCEEe
Q 048006          663 LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISP-------KIGQLKSLDFLD  716 (833)
Q Consensus       663 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~  716 (833)
                      +|+.|||++|+++...+-.+.....|+.|++++|.+......       .+..+|+|+.||
T Consensus        92 ~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          92 NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            336667777777643333333445677777777777654432       245677787775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.56  E-value=1.8e-05  Score=71.22  Aligned_cols=90  Identities=14%  Similarity=0.101  Sum_probs=46.0

Q ss_pred             CCCCCCEEeCCCC-CCCCCC---ccccccCCCCCCEEEccCCCCCC----CCCcccCCccccceecccCccCCCCCCc--
Q 048006           85 KLHDLRHLNLSFN-DFSGSP---IPEFIGSLSKLRYLDLFGTVFAG----PIPPQLGNLSRLQHLDLGSNYLFSTGNL--  154 (833)
Q Consensus        85 ~l~~L~~L~Ls~n-~~~~~~---~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~~~~~~~~--  154 (833)
                      +.++|++|+|+++ .++...   +-..+...++|++|+|++|.+..    .+...+...+.|++|+|++|.+...+..  
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4467777777764 344221   22335566677777777776652    1222334445666666666655321111  


Q ss_pred             -ccccCCCCCcEEecCCCCCC
Q 048006          155 -DWLSHLSYLRYLNLDESNLA  174 (833)
Q Consensus       155 -~~l~~l~~L~~L~Ls~n~~~  174 (833)
                       ..+...++|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence             12344445555555554433

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.54  E-value=2.3e-05  Score=70.60  Aligned_cols=81  Identities=16%  Similarity=0.158  Sum_probs=43.1

Q ss_pred             cEEEccCCcCCC----CCchhhhcccCCcEEECCCccccccC----CcccCCCCCCCEEeCCCCcCccc-------CCcc
Q 048006          665 KSLELSNNNLNG----AVPEEIMDLVGLVALNLSKNHLTGQI----SPKIGQLKSLDFLDLSRNQLVGG-------IPSS  729 (833)
Q Consensus       665 ~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~-------~p~~  729 (833)
                      ++|+|++|.+..    .+...+...+.|++|+|++|.++...    -..+...++|++|++++|.+...       +...
T Consensus        47 ~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~  126 (167)
T d1pgva_          47 EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA  126 (167)
T ss_dssp             CEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH
T ss_pred             ceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHH
Confidence            444444444432    12233444556666666666665321    12345556677777777655422       2334


Q ss_pred             ccCCCCCCEEECcCCc
Q 048006          730 LSQLSGLSVMDLSYNN  745 (833)
Q Consensus       730 l~~l~~L~~L~ls~N~  745 (833)
                      +..-++|+.|+++++.
T Consensus       127 L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         127 IEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHCSSCCEEECCCCC
T ss_pred             HHhCCCccEeeCcCCC
Confidence            4445677777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.94  E-value=5.4e-05  Score=68.07  Aligned_cols=115  Identities=21%  Similarity=0.258  Sum_probs=59.7

Q ss_pred             ccCCCCCCEEeCCC-CCCCCCC---ccccccCCCCCCEEEccCCCCCCC----CCcccCCccccceecccCccCCCCCCc
Q 048006           83 LLKLHDLRHLNLSF-NDFSGSP---IPEFIGSLSKLRYLDLFGTVFAGP----IPPQLGNLSRLQHLDLGSNYLFSTGNL  154 (833)
Q Consensus        83 l~~l~~L~~L~Ls~-n~~~~~~---~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~~~~~~~~  154 (833)
                      ..+.+.|++|+|++ +.++...   +-..+...++|++|+|++|.+...    +-..+...+.++.+++++|.+...+..
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34557788888876 3454321   223345677777788877776532    122334556677777776665321111


Q ss_pred             ---ccccCCCCCcEEecC--CCCCCCC--chhHHhhcCCCCCCEEEccCC
Q 048006          155 ---DWLSHLSYLRYLNLD--ESNLANS--SDWFQVIGKLHSLKTLSLHSC  197 (833)
Q Consensus       155 ---~~l~~l~~L~~L~Ls--~n~~~~~--~~~~~~l~~l~~L~~L~Ls~n  197 (833)
                         ..+...++|+.++|+  +|.+...  ..+...+...++|++|+++.+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence               234455556554443  3344321  223344455555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.76  E-value=0.0003  Score=62.92  Aligned_cols=45  Identities=7%  Similarity=0.053  Sum_probs=25.2

Q ss_pred             cCCCCCcEEECcC-Cccccc----ccccccCCCCCcEEEccCCCCCchhh
Q 048006          260 QHMVYLEHLRLSF-NELEGG----IPKFFGNMCSLITLNLSNNKLSGQLS  304 (833)
Q Consensus       260 ~~l~~L~~L~L~~-n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~  304 (833)
                      .+.+.|++|++++ +.++..    +...+...++|++|++++|.++....
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~   63 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA   63 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHH
Confidence            3456666777665 344421    22334456667777777776655433