Citrus Sinensis ID: 048017

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
MTIKFKNRSFFTFLTLFFSFSTLSLSVSDHFDGDYSPNNNNNNNNMPSKSGGQWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSMEFMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEPDRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYMRPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVVNGPPTATVAPPGYYMMFVVHAGIPSHAVWVKVTWN
ccEEEcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEccccccccEEEEEEccccEEEEEEcccccccccccccccccccccccccccccEEEEEEcccccEEEcccccccccccccccccccEEEEcEEcccccEEEEEEccccccccEEEccccccccccEEEEEEcccccEEEEEccccccEEEEccccccccccccccEEcccccccccccccEEEEcccccEEEEEcccEEEEEccccEEEEEEccccccccccccccccEEEccccccccccccccccccccEEEEEEccccccccccccccEEEEccccccEEEEccccccEEEcccccccEEccEEEcccccEEEEcccccccccccccccccccEEEccccccccccEEEEEEcccccEEEEcccccccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEEEEEEEEEcccccccEEEEEEEccccccccccccccEEEEEEEEEEEccccEEEEEEEccccccccccccEEEEEEccccccccEEEEEEEc
ccEEEEcccHHHHHHHHHcccEEEEccccHcccccccccccccccccccccccEEEEcccccccEEEEEEccccEEEEEEcccccccccccccccccccccccccccEEEEEEEccccccEEEcccccccccccccEccccEEEEEcccccccEEEEEEccccccccccEcccccHcccccccccEEcccccEEEEEccccccEEEcccccccccccccccHHcccccccccccccEEEEcccccEEEEEccccEEEcccccEEEEEccccccccccccccccccEEEcccccccccccccccccccEEEEEcccccccccccccccccccccccccEEEEccccccEEccccccccccccEEEcccccEEEEEcccccccccccccccccccEEcccccccccEccEEEEccccEEEEEcccccccccccccccccEEEEEEEccccccccccccccEEEEccccccccEcccEEEEEEEEcccccccEEEEEEEccccEEcEcccccEEEEEEEEcccccccccEEEEEEccccccccccccEEEEEEEcccccEEEEEEEEcc
mtikfknrsfftFLTLFFSFstlslsvsdhfdgdyspnnnnnnnnmpsksgGQWVLLQSSIGISAMHMQVLNndkviifdrtdmgpsnlslpidkcrkegdvgqldctaHSVLYDIasntfrplllqtdtwcssgavlsdgtlvqtggynvgdrvirlftpcndegcdWVELSKNLWDRRWYAsnqilpdnriivvggrrvftyefypkidslsSSLYLRFLIetrdpgeennlypflhllpdgnlfifANRRSILFDYINnklvkefpvipgndkrnypstgssillpvklsagsdgngtaalpdaevmvcggapagafiksdkesVYVEASrtcgrlkvtdkypvwsmefmpmprvmsdmlllpsgdviiingasngtagwedaeepdrrfvvlnpskiprmyhssavvlpdgrilvggsnphrrynftaypyptdlsleafhphyldpenaymrpsilslesidrtvsyNEVFAVTFElssyspsgeisvslmtpsftthsfaMNQRLVVLNVVSVSQLSVYAYKVVvngpptatvappgyYMMFVVHAGIPSHAVWVKVTWN
mtikfknrsffTFLTLFFSFSTLSLSVSDHFDGDYSPNNNNNNNNMPSKSGGQWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYAsnqilpdnriivVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGafiksdkesvyveasrtcgrlkvtdkypvWSMEFMPMPRVMSDMLLLPSGDVIIINGASNGTagwedaeepdRRFVVLnpskiprmyhssavvlpdGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYMRPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVVNGPPTATVAPPGYYMMFVVHAGIPSHAVWVKVTWN
MTIKFKNRsfftfltlffsfstlslsVSDHFDGDYSPnnnnnnnnMPSKSGGQWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSMEFMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEPDRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYMRPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRlvvlnvvsvsqlsvYAYKVVVNGPPTATVAPPGYYMMFVVHAGIPSHAVWVKVTWN
****************************************************QWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGN***********ILLPVK**********AALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSMEFMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAE*PDRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYMRPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVVNGPPTATVAPPGYYMMFVVHAGIPSHAVWVKVTW*
******NRSFFTFLTLFFSFSTLSLSVSDHFDGD****************GGQWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSMEFMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEPDRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYMRPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVVNGPPTATVAPPGYYMMFVVHAGIPSHAVWVKVTWN
MTIKFKNRSFFTFLTLFFSFSTLSLSVSDHFDGDYSPNNNNNNNNMPSKSGGQWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSMEFMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEPDRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYMRPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVVNGPPTATVAPPGYYMMFVVHAGIPSHAVWVKVTWN
*TIKFKNRSFFTFLTLFFSFSTLSLSVSDHFDGDYSPNNNNNNNNMPSKSGGQWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSMEFMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEPDRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYMRPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVVNGPPTATVAPPGYYMMFVVHAGIPSHAVWVKVTW*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTIKFKNRSFFTFLTLFFSFSTLSLSVSDHFDGDYSPNNNNNNNNMPSKSGGQWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSMEFMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEPDRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYMRPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVVNGPPTATVAPPGYYMMFVVHAGIPSHAVWVKVTWN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query566 2.2.26 [Sep-21-2011]
I1S2N3680 Galactose oxidase OS=Gibb no no 0.696 0.579 0.234 5e-11
P0CS93680 Galactose oxidase OS=Gibb no no 0.696 0.579 0.234 7e-11
>sp|I1S2N3|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GAOA PE=3 SV=1 Back     alignment and function desciption
 Score = 70.1 bits (170), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 109/464 (23%), Positives = 185/464 (39%), Gaps = 70/464 (15%)

Query: 125 LLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYAS 184
           + + D +C   ++  +G +V TGG +   +   L+   +D    W+    ++   R Y S
Sbjct: 262 VTKHDMFCPGISMDGNGQIVVTGGNDA--KKTSLYDSSSDS---WIP-GPDMQVARGYQS 315

Query: 185 NQILPDNRIIVVGGR-RVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPD 243
           +  + D R+  +GG      +E   ++ S SS  +        +P           L  D
Sbjct: 316 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP----------MLTAD 365

Query: 244 GNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAA 303
                 ++  + LF +   K    F   P      Y ++GS  +     SAG   +    
Sbjct: 366 KQGLYRSDNHAWLFGW---KKGSVFQAGPSTAMNWYYTSGSGDVK----SAGKRQSNRGV 418

Query: 304 LPDAEVMVCGGAP-----AGAFIKSDKESVYVEASRTCGRLKVTDKYP------VWSMEF 352
            PDA   +CG A       G  +       Y ++  T     +T   P      V++   
Sbjct: 419 APDA---MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG 475

Query: 353 MPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEE--------PDR-RFVVLNPSKIPR 403
           +   R     ++LP G   I  G   G   +ED+          P++  F   NP+ I R
Sbjct: 476 LYFARTFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVR 534

Query: 404 MYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYM--RPSIL 461
           +YHS +++LPDGR+  GG                    + F P+YL   N  +  RP I 
Sbjct: 535 VYHSISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI- 587

Query: 462 SLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQ 521
                  T +  +   V   ++  + S     SL+     TH+   +QR + L + +   
Sbjct: 588 -------TRTSTQSVKVGGRITISTDSSITKASLIRYGTATHTVNTDQRRIPLTLTNNGG 640

Query: 522 LSVYAYKVVVNGPPTATVAPPGYYMMFVVH-AGIPSHAVWVKVT 564
            S Y+++V    P  + VA PGY+M+FV++ AG+PS A  ++VT
Sbjct: 641 NS-YSFQV----PSDSGVALPGYWMLFVMNSAGVPSVASTIRVT 679
Catalyzes the sterospecific oxidation of primary alcohols to the corresponding aldehydes. The biologically relevant substrate of the enzyme is not known as the enzyme exhibits broad substrate specificity from small alcohols through sugars to oligo- and polysaccharides (By similarity).
Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 9
>sp|P0CS93|GAOA_GIBZA Galactose oxidase OS=Gibberella zeae GN=GAOA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
225424897 874 PREDICTED: uncharacterized protein LOC10 0.952 0.616 0.612 0.0
224102707544 predicted protein [Populus trichocarpa] 0.929 0.966 0.650 0.0
255558230567 conserved hypothetical protein [Ricinus 0.969 0.968 0.617 0.0
297844346564 hypothetical protein ARALYDRAFT_888820 [ 0.890 0.893 0.639 0.0
334182573564 glyoxal oxidase-related protein [Arabido 0.892 0.895 0.633 0.0
356501926560 PREDICTED: uncharacterized protein LOC10 0.906 0.916 0.601 0.0
357512197570 Galactose oxidase [Medicago truncatula] 0.883 0.877 0.570 1e-170
357486597536 hypothetical protein MTR_5g038410 [Medic 0.871 0.919 0.568 1e-169
297817088547 hypothetical protein ARALYDRAFT_907231 [ 0.878 0.908 0.573 1e-169
15230360547 glyoxal oxidase-related protein [Arabido 0.878 0.908 0.579 1e-167
>gi|225424897|ref|XP_002269734.1| PREDICTED: uncharacterized protein LOC100253553 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/578 (61%), Positives = 435/578 (75%), Gaps = 39/578 (6%)

Query: 6   KNRSFFTFLTLFFSFSTLSLSVSDHFDGDYSPNNNNNNNNMPSKSGGQWVLLQSSIGISA 65
           K  SF   L  F S   LS      F  D S  ++NN        GG W LL SSIGISA
Sbjct: 315 KKSSFLMSLIKFLSLMPLST-----FGFDISTPSSNN--------GGSWFLLHSSIGISA 361

Query: 66  MHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKE-GDVG-QLDCTAHSVLYDIASNTFRP 123
           MHMQ+L+N+K+IIFDRTD G SNLSLP   CR +  D+  ++DCTAHS+LYD+  N+ RP
Sbjct: 362 MHMQILHNNKIIIFDRTDFGASNLSLPDGHCRSDPNDMALKVDCTAHSLLYDVLLNSIRP 421

Query: 124 LLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYA 183
           L+LQTDTWCSSG+V++DGTL+QTGGYN G+RV R FTPCND+ CDW EL + L  RRWYA
Sbjct: 422 LMLQTDTWCSSGSVIADGTLIQTGGYNDGERVARTFTPCNDDQCDWKELPEYLSVRRWYA 481

Query: 184 SNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSS----LYLRFLIETRDPGEENNLYPFLH 239
           SNQILPD RIIVVGGR  F+YEF+PK ++L+S+     YL+FL +TRDP EENNLYPFLH
Sbjct: 482 SNQILPDGRIIVVGGRNAFSYEFFPK-NTLNSTSQPNYYLKFLKDTRDPKEENNLYPFLH 540

Query: 240 LLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGN 299
           LLPDGNLFIFAN+RSI FDY  N++VKEFPVIPG D R+YPSTGSS++LP++L++G+   
Sbjct: 541 LLPDGNLFIFANKRSISFDYTQNRVVKEFPVIPGEDSRSYPSTGSSVMLPLRLTSGNQSQ 600

Query: 300 GTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSMEFMPMPRVM 359
                P+ E++VCGGAP G++ K+++   Y+ AS+TCGR+KVTD  P W ME MPMPRVM
Sbjct: 601 S----PEVEILVCGGAPKGSYSKAER-GTYISASKTCGRIKVTDPNPKWVMEQMPMPRVM 655

Query: 360 SDMLLLPSGDVIIINGASNGTAGWED--------------AEEPDRRFVVLNPSKIPRMY 405
           SDM++LP+GDV++INGASNGTAGWED              A +P +RF VLNPS+ PRMY
Sbjct: 656 SDMIILPTGDVLLINGASNGTAGWEDGRNPVLNPVLYRSYASDPSQRFWVLNPSRTPRMY 715

Query: 406 HSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYMRPSILSLES 465
           HS AV++PDGR++VGGSNPHR YNFTAYPYPT+L LEAF P YL P  +Y+RPSILS+E+
Sbjct: 716 HSGAVLVPDGRVIVGGSNPHRVYNFTAYPYPTELGLEAFSPPYLAPRYSYLRPSILSIET 775

Query: 466 IDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVY 525
               + Y   F+++  LS Y  S  I V +MTPSFTTHSFAMNQR VVLNV S++QLS++
Sbjct: 776 PQNVLLYRGSFSISLTLSLYLRSRGIEVMIMTPSFTTHSFAMNQRAVVLNVTSMAQLSLF 835

Query: 526 AYKVVVNGPPTATVAPPGYYMMFVVHAGIPSHAVWVKV 563
           AYK+VV+GP    +APPGYYM+FVVHAG PS  VWVKV
Sbjct: 836 AYKLVVSGPQKTAIAPPGYYMLFVVHAGTPSQGVWVKV 873

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102707|ref|XP_002312784.1| predicted protein [Populus trichocarpa] gi|222852604|gb|EEE90151.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255558230|ref|XP_002520142.1| conserved hypothetical protein [Ricinus communis] gi|223540634|gb|EEF42197.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297844346|ref|XP_002890054.1| hypothetical protein ARALYDRAFT_888820 [Arabidopsis lyrata subsp. lyrata] gi|297335896|gb|EFH66313.1| hypothetical protein ARALYDRAFT_888820 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334182573|ref|NP_172895.2| glyoxal oxidase-related protein [Arabidopsis thaliana] gi|7262685|gb|AAF43943.1|AC012188_20 Weak similarity to glyoxal oxidase (glx2) from Phanerochaete chrysosporium gb|L47287 [Arabidopsis thaliana] gi|332191041|gb|AEE29162.1| glyoxal oxidase-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356501926|ref|XP_003519774.1| PREDICTED: uncharacterized protein LOC100813021 [Glycine max] Back     alignment and taxonomy information
>gi|357512197|ref|XP_003626387.1| Galactose oxidase [Medicago truncatula] gi|355501402|gb|AES82605.1| Galactose oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357486597|ref|XP_003613586.1| hypothetical protein MTR_5g038410 [Medicago truncatula] gi|355514921|gb|AES96544.1| hypothetical protein MTR_5g038410 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297817088|ref|XP_002876427.1| hypothetical protein ARALYDRAFT_907231 [Arabidopsis lyrata subsp. lyrata] gi|297322265|gb|EFH52686.1| hypothetical protein ARALYDRAFT_907231 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15230360|ref|NP_191321.1| glyoxal oxidase-related protein [Arabidopsis thaliana] gi|4678285|emb|CAB41193.1| putative protein [Arabidopsis thaliana] gi|332646158|gb|AEE79679.1| glyoxal oxidase-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
TAIR|locus:2076696547 AT3G57620 "AT3G57620" [Arabido 0.878 0.908 0.573 3.1e-154
TAIR|locus:2005664547 AT1G75620 "AT1G75620" [Arabido 0.874 0.904 0.512 7.7e-135
TAIR|locus:2035408548 AT1G19900 "AT1G19900" [Arabido 0.892 0.921 0.496 6.9e-134
TAIR|locus:2084480545 AT3G53950 "AT3G53950" [Arabido 0.865 0.899 0.441 1.1e-110
TAIR|locus:2019564615 GLOX1 "AT1G67290" [Arabidopsis 0.881 0.811 0.426 7.2e-107
TAIR|locus:2180791594 AT5G19580 "AT5G19580" [Arabido 0.881 0.840 0.402 4.6e-105
UNIPROTKB|G4MQZ0669 MGG_02368 "Galactose oxidase" 0.427 0.361 0.237 0.00063
TAIR|locus:2076696 AT3G57620 "AT3G57620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1504 (534.5 bits), Expect = 3.1e-154, P = 3.1e-154
 Identities = 301/525 (57%), Positives = 367/525 (69%)

Query:    53 QWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEG-DVGQ-LDCTAH 110
             +W +L  SIGISAMHMQ+L+N  VI+FDRTD G SN+SLP   CR +  D  +  DC+AH
Sbjct:    36 RWEMLLPSIGISAMHMQLLHNGMVIMFDRTDFGTSNVSLPGGICRYDPTDTAEKFDCSAH 95

Query:   111 SVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCN-DEGCDW 169
             SVLYD+ SNT+RPL +QTDTWCSSGAVL +GTLVQTGGYN G+R  R+F+PC   + CDW
Sbjct:    96 SVLYDVVSNTYRPLNVQTDTWCSSGAVLPNGTLVQTGGYNDGERAARMFSPCGYSDTCDW 155

Query:   170 VELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPG 229
             +E  + L  RRWYA+NQILPD RIIVVGGRR F YE +P+ DS S S  L FL ET D  
Sbjct:   156 IEFPQYLSQRRWYATNQILPDGRIIVVGGRRQFNYELFPRHDSRSRSSRLEFLRETSDGS 215

Query:   230 EENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLP 289
              ENNLYPF+HLLPDGNLF+FAN RSI+FDY  N++VKEFP IPG D RNYPS+GSSIL P
Sbjct:   216 NENNLYPFIHLLPDGNLFVFANTRSIVFDYKKNRIVKEFPEIPGGDPRNYPSSGSSILFP 275

Query:   290 VKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWS 349
               L   +D N      + E+MVCGG+P G F +      +  A+ TCGRLK++D+ P W 
Sbjct:   276 --LDDTNDAN-----VEVEIMVCGGSPKGGFSRG-----FTRATSTCGRLKLSDQSPSWE 323

Query:   350 MEFMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEP----------DRRFVVLNPS 399
             ME MP+PRVM DMLLLP+GDVII+NGA  GTAGWE A +P          D  F V++  
Sbjct:   324 METMPLPRVMGDMLLLPTGDVIIVNGAGAGTAGWEKARDPIIQPVIYQPFDHLFTVMSTP 383

Query:   400 KIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYMRPS 459
               PRMYHSSA++LPDGR+LVGGSNPH  YNFT   YPTDLSLEA+ P YL   +  +RP 
Sbjct:   384 SRPRMYHSSAILLPDGRVLVGGSNPHVYYNFTNVEYPTDLSLEAYSPPYLFFTSDPIRPK 443

Query:   460 ILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRXXXXXXXXX 519
             IL L S D+ +SY  +F V F ++ +     +SV ++ PSFTTHSFAMNQR         
Sbjct:   444 IL-LTS-DKVLSYKRLFNVDFSIAQFLTVDLLSVRIVAPSFTTHSFAMNQRMVILKLLSV 501

Query:   520 XXXX-XYAYKVVVNGPPTATVAPPGYYMMFVVHAGIPSHAVWVKV 563
                    +Y+V   GP TA +APPGYYM+F+VHAGIPS A WV++
Sbjct:   502 TRDQLTNSYRVSALGPSTAEIAPPGYYMIFLVHAGIPSSAAWVQI 546
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2005664 AT1G75620 "AT1G75620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035408 AT1G19900 "AT1G19900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084480 AT3G53950 "AT3G53950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019564 GLOX1 "AT1G67290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180791 AT5G19580 "AT5G19580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4MQZ0 MGG_02368 "Galactose oxidase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028985001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (594 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
pfam07250243 pfam07250, Glyoxal_oxid_N, Glyoxal oxidase N-termi 1e-122
cd02851103 cd02851, E_set_GO_C, C-terminal Early set domain a 2e-32
pfam0911897 pfam09118, DUF1929, Domain of unknown function (DU 1e-29
>gnl|CDD|219349 pfam07250, Glyoxal_oxid_N, Glyoxal oxidase N-terminus Back     alignment and domain information 
 Score =  360 bits (926), Expect = e-122
 Identities = 153/252 (60%), Positives = 188/252 (74%), Gaps = 12/252 (4%)

Query: 66  MHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKE-GD-VGQLDCTAHSVLYDIASNTFRP 123
           MHMQ+L+N+KVI+FDRT+ GPSN+SLP  +CR + GD   ++DC+AHSVLYD+A+NT RP
Sbjct: 1   MHMQLLHNNKVIMFDRTNFGPSNISLPPGRCRPDPGDAPLKIDCSAHSVLYDVATNTIRP 60

Query: 124 LLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCN-DEGCDWVELSKNLWDRRWY 182
           L +QTDTWCSSGA+LSDGTLVQTGG   G+R +R F+PC+ ++ CDW+E    L  RRWY
Sbjct: 61  LTVQTDTWCSSGALLSDGTLVQTGGDGDGERKVRYFSPCDSNDTCDWIEFPATLAARRWY 120

Query: 183 ASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLP 242
           A+NQILPD   I++GGRR F YEF+PK      +  LRFL ET D  +ENNLYPF+ LLP
Sbjct: 121 ATNQILPDGSFIIIGGRRAFNYEFFPKKGQNPRASALRFLRETEDS-QENNLYPFVFLLP 179

Query: 243 DGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTA 302
           DGNLFIFAN RSILFDY  N +VKEFP IPG   RNYPS+GSS+LLP+      +     
Sbjct: 180 DGNLFIFANNRSILFDYRKNTVVKEFPQIPGG-PRNYPSSGSSVLLPLDDRNPDN----- 233

Query: 303 ALPDAEVMVCGG 314
               AEV+VCGG
Sbjct: 234 --LTAEVLVCGG 243

This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. Length = 243
>gnl|CDD|199882 cd02851, E_set_GO_C, C-terminal Early set domain associated with the catalytic domain of galactose oxidase Back     alignment and domain information
>gnl|CDD|220118 pfam09118, DUF1929, Domain of unknown function (DUF1929) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 566
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 100.0
cd02851101 Galactose_oxidase_C_term Galactose oxidase C-termi 100.0
PF0911898 DUF1929: Domain of unknown function (DUF1929); Int 100.0
PHA02713557 hypothetical protein; Provisional 100.0
PHA02713557 hypothetical protein; Provisional 99.97
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.97
PLN02153341 epithiospecifier protein 99.96
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 99.96
PHA02790480 Kelch-like protein; Provisional 99.96
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.95
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.94
PHA02790480 Kelch-like protein; Provisional 99.94
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 99.94
PHA03098534 kelch-like protein; Provisional 99.93
PLN02193470 nitrile-specifier protein 99.93
PHA03098534 kelch-like protein; Provisional 99.91
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.91
PLN02193470 nitrile-specifier protein 99.9
PLN02153341 epithiospecifier protein 99.9
KOG4693392 consensus Uncharacterized conserved protein, conta 99.74
KOG4693392 consensus Uncharacterized conserved protein, conta 99.72
KOG0379482 consensus Kelch repeat-containing proteins [Genera 99.52
KOG0379482 consensus Kelch repeat-containing proteins [Genera 99.35
KOG1230521 consensus Protein containing repeated kelch motifs 99.07
COG3055381 Uncharacterized protein conserved in bacteria [Fun 99.0
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 98.98
KOG1230521 consensus Protein containing repeated kelch motifs 98.97
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 98.94
COG3055381 Uncharacterized protein conserved in bacteria [Fun 98.91
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 98.73
PF1396450 Kelch_6: Kelch motif 98.4
PF1396450 Kelch_6: Kelch motif 98.35
smart0061247 Kelch Kelch domain. 98.1
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 97.93
smart0061247 Kelch Kelch domain. 97.9
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 97.73
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 97.7
PF1341549 Kelch_3: Galactose oxidase, central domain 97.55
PF1341549 Kelch_3: Galactose oxidase, central domain 97.54
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 97.47
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 97.28
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 97.25
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 96.52
PLN02772398 guanylate kinase 96.52
PLN02772 398 guanylate kinase 96.47
PRK13684334 Ycf48-like protein; Provisional 96.33
KOG0286343 consensus G-protein beta subunit [General function 96.14
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 95.62
PF13088275 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 94.44
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 94.14
KOG0310487 consensus Conserved WD40 repeat-containing protein 94.14
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 93.38
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 92.66
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 92.56
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 92.32
PF1385442 Kelch_5: Kelch motif 92.24
PRK13684334 Ycf48-like protein; Provisional 92.23
PF1385442 Kelch_5: Kelch motif 91.91
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 91.69
KOG0310487 consensus Conserved WD40 repeat-containing protein 90.37
PRK11028330 6-phosphogluconolactonase; Provisional 90.18
KOG2437723 consensus Muskelin [Signal transduction mechanisms 90.18
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 89.75
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 89.75
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 89.58
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 88.14
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 87.42
KOG2437723 consensus Muskelin [Signal transduction mechanisms 86.41
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 86.31
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 85.88
PRK11028330 6-phosphogluconolactonase; Provisional 85.53
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 84.1
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 83.4
PF13088275 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 80.17
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information 
Probab=100.00  E-value=2e-45  Score=361.56  Aligned_cols=238  Identities=54%  Similarity=0.998  Sum_probs=212.2

Q ss_pred             eEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCC--CCCCCcccceEEEEECCCCcEEeCcCCCcccccCCeecCCCcE
Q 048017           66 MHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEG--DVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTL  143 (566)
Q Consensus        66 ~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~--~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l  143 (566)
                      ||++++++|||+++++.+.|+|++++|+|+||.+.  ...+.||++++.+||+.|++++++...++.||+++++|+||++
T Consensus         1 mh~~~~~~~~v~~~d~t~~g~s~~~~~~~~c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~l   80 (243)
T PF07250_consen    1 MHMALLHNNKVIMFDRTNFGPSNISLPDGRCRDNPEDNALKFDGPAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRL   80 (243)
T ss_pred             CeEeEccCCEEEEEeCCCcccccccCCCCccccCccccccccCceEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCE
Confidence            79999999999999999999999999999999866  5677889999999999999999999999999999999999999


Q ss_pred             EEEcCCCCCCCeEEEEcCCC-CCCCcccccCcccccccCcceEEEecCCcEEEEcCccCCeEEEEeCCCCCCCeeeeccc
Q 048017          144 VQTGGYNVGDRVIRLFTPCN-DEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFL  222 (566)
Q Consensus       144 ~vvGG~~~g~~~v~~ydP~~-~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~yP~~~~~~~w~~~p~l  222 (566)
                      +++||+.+|.+.++.|+|+. +++++|.+.+..|..+|||+++++|+||+|+|+||+..+++|+||+.........++++
T Consensus        81 l~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l  160 (243)
T PF07250_consen   81 LQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFL  160 (243)
T ss_pred             EEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecc
Confidence            99999998999999999995 34689999876699999999999999999999999999999999764212233455666


Q ss_pred             cccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecc--cccCCCCCCC
Q 048017          223 IETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPV--KLSAGSDGNG  300 (566)
Q Consensus       223 ~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl--~~~~~~~~~~  300 (566)
                      ..+.+ ..+.++||+++++|||+||+++++.+++||++++++.+.+|.||++ .|.||.+|++|||||  .+.     |.
T Consensus       161 ~~~~~-~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg~-~R~YP~sgssvmLPl~~~~~-----~~  233 (243)
T PF07250_consen  161 SQTSD-TLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPGG-PRNYPASGSSVMLPLTDTPP-----NN  233 (243)
T ss_pred             hhhhc-cCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCCC-ceecCCCcceEEecCccCCC-----CC
Confidence            65544 2578999999999999999999999999999999987789999988 899999999999999  543     45


Q ss_pred             CCCCCCCEEEEEcC
Q 048017          301 TAALPDAEVMVCGG  314 (566)
Q Consensus       301 y~~~~~gkI~v~GG  314 (566)
                      |    ..+|+||||
T Consensus       234 ~----~~evlvCGG  243 (243)
T PF07250_consen  234 Y----TAEVLVCGG  243 (243)
T ss_pred             C----CeEEEEeCC
Confidence            5    799999998

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain Back     alignment and domain information
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF13854 Kelch_5: Kelch motif Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PF13854 Kelch_5: Kelch motif Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG2437 consensus Muskelin [Signal transduction mechanisms] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>KOG2437 consensus Muskelin [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
2wq8_A661 Glycan Labelling Using Engineered Variants Of Galac 1e-10
2eib_A639 Crystal Structure Of Galactose Oxidase, W290h Mutan 1e-10
2eic_A639 Crystal Structure Of Galactose Oxidase Mutant W290f 2e-10
2eie_A639 Crystal Structure Of Galactose Oxidase Complexed Wi 2e-10
2eid_A639 Galactose Oxidase W290g Mutant Length = 639 2e-10
1t2x_A639 Glactose Oxidase C383s Mutant Identified By Directe 7e-10
1k3i_A656 Crystal Structure Of The Precursor Of Galactose Oxi 9e-10
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose Oxidase Obtained By Directed Evolution Length = 661 Back     alignment and structure 
Iteration: 1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 179/464 (38%), Gaps = 70/464 (15%)
Query: 125 LLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYAS 184
           + + D +C   ++  +G +V TGG +   +   L+   +D    W+    ++   R Y S
Sbjct: 243 VTKHDMFCPGISMDGNGQIVVTGGNDA--KKTSLYDSSSDS---WIP-GPDMQVARGYQS 296
Query: 185 NQILPDNRIIVVGGR-RVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPD 243
           +  + D R+  +GG      +E   ++ S SS  +        +P           L  D
Sbjct: 297 SATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSLPNAKVNP----------MLTAD 346
Query: 244 GNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAA 303
                 ++  + LF +   K    F   P      Y ++GS  +     SAG   +    
Sbjct: 347 KQGLYKSDNHAWLFGW---KKGSVFQAGPSTAMNWYYTSGSGDVK----SAGKRQSNRGV 399
Query: 304 LPDAEVMVCGGAP-----AGAFIKSDKESVYVEASRTCGRLKVTDKYP------VWSMEF 352
            PDA   +CG A       G  +       Y ++  T     +T   P      V++   
Sbjct: 400 APDA---MCGNAVMYDAVKGKILTFGGSPDYTDSDATTNAHIITLGEPGTSPNTVFASNG 456
Query: 353 MPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEE--------PDR-RFVVLNPSKIPR 403
           +   R     ++LP G   I  G   G   +ED+          P++  F   NP+ I R
Sbjct: 457 LYFARTFHTSVVLPDGSTFITGGQRRGII-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVR 515
Query: 404 MYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYM--RPSIL 461
            YHS +++LPDGR+  GG                    + F P+YL   N  +  RP I 
Sbjct: 516 AYHSISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYDSNGNLATRPKI- 568
Query: 462 SLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRXXXXXXXXXXX 521
                  T +  +   V   ++  + S     SL+     TH+   +QR           
Sbjct: 569 -------TRTSTQSVKVGGRITISTDSSISKASLIRYGTATHTVNTDQR-RIPLTLTNNG 620
Query: 522 XXXYAYKVVVNGPPTATVAPPGYYMMFVVH-AGIPSHAVWVKVT 564
              Y+++V    P  + VA PGY+M+FV++ AG+PS A  ++VT
Sbjct: 621 GNSYSFQV----PSDSGVALPGYWMLFVMNSAGVPSVASTIRVT 660
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant Length = 639 Back     alignment and structure
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f Length = 639 Back     alignment and structure
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With Azide Length = 639 Back     alignment and structure
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant Length = 639 Back     alignment and structure
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed Evolution Length = 639 Back     alignment and structure
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase Length = 656 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 5e-88
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 Back     alignment and structure
 Score =  284 bits (727), Expect = 5e-88
 Identities = 93/542 (17%), Positives = 182/542 (33%), Gaps = 53/542 (9%)

Query: 40  NNNNNNMPSKSGGQWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKE 99
           N       ++         ++            +  ++         S   L     R +
Sbjct: 150 NGQPWTSIAEINVFQASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRND 209

Query: 100 GDVGQLDCTAHSVLYDIASNTFRP---LLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVI 156
              G       +  +D ++         + + D +C   ++  +G +V TGG     +  
Sbjct: 210 AFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN--DAKKT 267

Query: 157 RLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRR-----VFTYEFYPKID 211
            L+   +     W+    ++   R Y S+  + D R+  +GG           E Y    
Sbjct: 268 SLYDSSS---DSWIPGP-DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323

Query: 212 SLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVI 271
              +SL    +       ++  LY       D + ++F  ++  +F    +  +  +   
Sbjct: 324 KTWTSLPNAKVNPMLTA-DKQGLYR-----SDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377

Query: 272 PGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVE 331
              D ++     S+  +      G+     A     +++  GG+P      +        
Sbjct: 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDA--VKGKILTFGGSPDYQDSDATTN----- 430

Query: 332 ASRTCGRLKVTDKYPVWSMEFMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDA----- 386
           A         T    V++   +   R     ++LP G   I  G   G    +       
Sbjct: 431 AHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP 490

Query: 387 --EEPDR-RFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEA 443
               P++  F   NP+ I R+YHS +++LPDGR+  GG                    + 
Sbjct: 491 EIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLC------GDCTTNHFDAQI 544

Query: 444 FHPHYLDPENAYMRPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTH 503
           F P+YL   N  +        +  ++V       ++        S     SL+     TH
Sbjct: 545 FTPNYLYNSNGNLATRPKITRTSTQSVKVGGRITIST------DSSISKASLIRYGTATH 598

Query: 504 SFAMNQRLVVLNVVSVSQLSVYAYKVVVNGPPTATVAPPGYYMMFVVHA-GIPSHAVWVK 562
           +   +QR + L + +               P  + VA PGY+M+FV+++ G+PS A  ++
Sbjct: 599 TVNTDQRRIPLTLTNNG-----GNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIR 653

Query: 563 VT 564
           VT
Sbjct: 654 VT 655
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 100.0
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 100.0
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 100.0
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 100.0
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 100.0
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.98
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.97
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.97
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.97
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.97
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.97
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.97
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.95
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 99.95
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.95
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 99.93
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.92
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 99.85
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 97.72
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 97.68
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 97.63
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 97.5
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 97.5
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 97.45
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.38
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 97.37
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 97.37
3ow8_A321 WD repeat-containing protein 61; structural genomi 97.34
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.23
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.21
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 97.2
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 97.18
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 97.15
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 97.13
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 97.11
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 97.1
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.02
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 96.96
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 96.94
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 96.84
3jrp_A379 Fusion protein of protein transport protein SEC13 96.83
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 96.74
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 96.74
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 96.73
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 96.72
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 96.72
3ow8_A321 WD repeat-containing protein 61; structural genomi 96.71
4e54_B435 DNA damage-binding protein 2; beta barrel, double 96.59
2pm7_B297 Protein transport protein SEC13, protein transport 96.54
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 96.5
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 96.43
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 96.42
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.37
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 96.35
2ymu_A577 WD-40 repeat protein; unknown function, two domain 96.28
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 96.24
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 96.23
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 96.22
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 96.22
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 96.2
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 96.18
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.16
3jrp_A379 Fusion protein of protein transport protein SEC13 96.1
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 96.07
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 95.98
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 95.97
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 95.92
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.85
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 95.77
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 95.76
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 95.73
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 95.73
2ymu_A577 WD-40 repeat protein; unknown function, two domain 95.73
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 95.68
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 95.67
3jro_A 753 Fusion protein of protein transport protein SEC13 95.66
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 95.61
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 95.61
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 95.59
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 95.57
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 95.55
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 95.54
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 95.53
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 95.48
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 95.48
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 95.38
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 95.36
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 95.36
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 95.32
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 95.28
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 95.27
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 95.11
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 94.99
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 94.99
3jro_A 753 Fusion protein of protein transport protein SEC13 94.97
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 94.91
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 94.89
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 94.71
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 94.71
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 94.66
2pm7_B297 Protein transport protein SEC13, protein transport 94.63
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 94.57
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 94.57
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 94.48
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 94.46
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 94.25
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 93.96
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 93.76
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 93.73
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 93.7
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 93.58
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 93.58
4g56_B357 MGC81050 protein; protein arginine methyltransfera 93.49
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 93.43
4g56_B357 MGC81050 protein; protein arginine methyltransfera 93.26
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 93.26
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 93.14
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 93.12
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 93.08
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 93.08
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 93.02
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 92.95
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 92.9
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 92.86
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 92.83
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 92.81
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 92.8
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 92.79
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 92.74
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 92.68
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 92.51
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 92.49
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 92.38
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 92.25
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 92.22
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 92.22
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 91.96
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 91.64
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 91.64
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 91.56
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 91.42
3v9f_A781 Two-component system sensor histidine kinase/RESP 91.1
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 90.75
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 90.62
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 90.61
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 90.56
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 90.39
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 89.7
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 89.69
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 89.67
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 89.57
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 89.39
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 88.77
4e54_B435 DNA damage-binding protein 2; beta barrel, double 88.52
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 88.51
2ecf_A 741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 88.42
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 88.3
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 88.29
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 88.08
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 87.96
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 87.8
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 87.75
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 87.3
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 87.2
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 85.65
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 85.19
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 84.22
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 83.99
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 82.17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
Probab=100.00  E-value=5.3e-73  Score=641.19  Aligned_cols=438  Identities=21%  Similarity=0.314  Sum_probs=341.3

Q ss_pred             CCCCceEEccCCCccceeEEEEee-CCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCC
Q 048017           49 KSGGQWVLLQSSIGISAMHMQVLN-NDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQ  127 (566)
Q Consensus        49 ~~~g~W~~l~~~~~~~a~h~~~l~-~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~  127 (566)
                      +..++|+.+++++ ....|+++++ +||||++||.....  +    |..     .   .....+.+|||.+++|+.++.+
T Consensus       173 p~~~~W~~~~~~P-~~~~~~av~~~~g~l~v~GG~~~~~--~----~~~-----~---~~~~~~~~yd~~t~~w~~~~~~  237 (656)
T 1k3i_A          173 PGLGRWGPTIDLP-IVPAAAAIEPTSGRVLMWSSYRNDA--F----GGS-----P---GGITLTSSWDPSTGIVSDRTVT  237 (656)
T ss_dssp             TTSCEEEEEEECS-SCCSEEEEETTTTEEEEEEECCCTT--T----CSC-----C---CSEEEEEEECTTTCCBCCCEEE
T ss_pred             CCCCeeeeeccCC-CCceeEEEEecCCEEEEEecccccc--c----ccC-----C---CCeEEEEEEeCCCCcEEeCccc
Confidence            5568999987654 4667888887 99999999975211  0    000     0   0124689999999999988765


Q ss_pred             ---CcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcCc-cC--
Q 048017          128 ---TDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGR-RV--  201 (566)
Q Consensus       128 ---~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~-~~--  201 (566)
                         +..+|++.+++.||+||++||...  .++++|||.   +++|+++++ |+.+||+|++++++||+|||+||. +.  
T Consensus       238 ~~~~~~~~~~~~~~~~g~lyv~GG~~~--~~v~~yd~~---t~~W~~~~~-~~~~R~~~s~~~~~dg~iyv~GG~~~~~~  311 (656)
T 1k3i_A          238 VTKHDMFCPGISMDGNGQIVVTGGNDA--KKTSLYDSS---SDSWIPGPD-MQVARGYQSSATMSDGRVFTIGGSWSGGV  311 (656)
T ss_dssp             ECSCCCSSCEEEECTTSCEEEECSSST--TCEEEEEGG---GTEEEECCC-CSSCCSSCEEEECTTSCEEEECCCCCSSS
T ss_pred             CCCCCCccccccCCCCCCEEEeCCCCC--CceEEecCc---CCceeECCC-CCccccccceEEecCCeEEEEeCcccCCc
Confidence               566888888889999999999753  479999999   899999997 999999999999989999999995 32  


Q ss_pred             --CeEEEE-eCCCCCCCeeee------ccccccCCCCCCCCccceEEEecCCcEEEEEcC-----------eeEEEeccC
Q 048017          202 --FTYEFY-PKIDSLSSSLYL------RFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-----------RSILFDYIN  261 (566)
Q Consensus       202 --~s~E~y-P~~~~~~~w~~~------p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-----------~~e~yDp~t  261 (566)
                        .++|+| |.++   .|...      |+...+         .. +.+..+++||++||.           .+++||+++
T Consensus       312 ~~~~~e~yd~~t~---~W~~~~~~~~~p~~~~~---------~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~  378 (656)
T 1k3i_A          312 FEKNGEVYSPSSK---TWTSLPNAKVNPMLTAD---------KQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG  378 (656)
T ss_dssp             CCCCEEEEETTTT---EEEEETTSCSGGGCCCC---------TT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred             ccccceEeCCCCC---cceeCCCcccccccccc---------cc-ceeecCCceEEEECCCCcEEEecCccceeeeecCC
Confidence              478999 8765   78764      333221         11 123468889998863           468999999


Q ss_pred             CeEEEeecccCCCC-CCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCC---eeE
Q 048017          262 NKLVKEFPVIPGND-KRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASR---TCG  337 (566)
Q Consensus       262 ~~W~~~~p~lp~~~-~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~---s~~  337 (566)
                      ++|.......+... ....+..+++++++..              +++||++||.+...         ...+++   +++
T Consensus       379 ~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~--------------~~~i~v~GG~~~~~---------~~~~~~~~~~v~  435 (656)
T 1k3i_A          379 SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV--------------KGKILTFGGSPDYQ---------DSDATTNAHIIT  435 (656)
T ss_dssp             TCEEEEEEECEETTEECCCCBTCEEEEEETT--------------TTEEEEECCBSSSS---------SSBCCCCEEEEE
T ss_pred             cceeecCCccccccccCCCCCCCceEeccCC--------------CCeEEEEeCCCCCC---------CCCcCCcceEEE
Confidence            99985332111100 0001234677776532              79999999975211         012345   455


Q ss_pred             EEEeeCCCCCeEEe---ccCCCcccceeEEccCCeEEEEcCCCCCCC-------CCccccCc-CCcEEeccCCCCCCcce
Q 048017          338 RLKVTDKYPVWSME---FMPMPRVMSDMLLLPSGDVIIINGASNGTA-------GWEDAEEP-DRRFVVLNPSKIPRMYH  406 (566)
Q Consensus       338 ~~d~~~~~~~W~~~---~M~~~R~~~~~vvLpdG~V~vvGG~~~g~~-------~~~~~ydP-t~~Wt~~~~~~~~R~yh  406 (566)
                      +||+.  .++|+..   +|+.+|.++++++++||+|||+||.+.+..       ...++||| +++|+.+++|+++|+||
T Consensus       436 ~yd~~--~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~h  513 (656)
T 1k3i_A          436 LGEPG--TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYH  513 (656)
T ss_dssp             CCSTT--SCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTT
T ss_pred             cCCCC--CCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccc
Confidence            56654  4789863   899999999999999999999999764321       12358999 99999999999999999


Q ss_pred             eEEEEcCCCcEEEecCCCCcccccCCCCCCCcceEEEEeccccCC--CCCCCCCceee-cCCccceeecCCeEEEEEEec
Q 048017          407 SSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDP--ENAYMRPSILS-LESIDRTVSYNEVFAVTFELS  483 (566)
Q Consensus       407 s~a~LlpdG~V~v~GG~~~~~~~~~~~~~~~~~~vE~y~Ppyl~~--~~~~~RP~i~~-~p~~~~~~~~g~~~~v~~~~~  483 (566)
                      |++++|+||+|||+||+.|+.+.      +.++++|+|+||||++  +.++.||+|++ +|   +++.||++|+|+++. 
T Consensus       514 s~a~ll~dg~v~v~GG~~~~~~~------~~~~~~e~~~Ppyl~~~~~~~~~rP~i~~~~~---~~~~~g~~~~~~~~~-  583 (656)
T 1k3i_A          514 SISLLLPDGRVFNGGGGLCGDCT------TNHFDAQIFTPNYLYNSNGNLATRPKITRTST---QSVKVGGRITISTDS-  583 (656)
T ss_dssp             EEEEECTTSCEEEEECCCCTTCS------CCCCEEEEEECGGGBCTTSSBCCCCCEEEESC---SEEETTCEEEEEESS-
T ss_pred             cHhhcCCCcEEEecCCCCCCCCC------CCeeEEEEEeChhhccCCCCcCCCCcccccCC---ceecCCCEEEEEEec-
Confidence            99999999999999999887542      3688999999999986  46678999999 48   899999999998852 


Q ss_pred             CCCCCcceEEEEEccCccccCCCCCcceEEeeeeeeeecccceEEEEEEcCCCCCcCCCcceEEEEEc-CCCCcccEEEE
Q 048017          484 SYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVVNGPPTATVAPPGYYMMFVVH-AGIPSHAVWVK  562 (566)
Q Consensus       484 ~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v~~P~~~~~~ppG~ymlfv~~-~gvPS~a~~v~  562 (566)
                           .+.+|+|||++|+||++|||||+|+|+++.   .|+  .+++|++|||++||||||||||||+ +||||+|+||+
T Consensus       584 -----~~~~~~l~~~~~~th~~~~~qr~~~l~~~~---~~~--~~~~~~~p~~~~~~ppg~y~lf~~~~~g~ps~~~~v~  653 (656)
T 1k3i_A          584 -----SISKASLIRYGTATHTVNTDQRRIPLTLTN---NGG--NSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIR  653 (656)
T ss_dssp             -----CCSEEEEEECCEEETTBCSSCCEEECCEEE---EET--TEEEEECCSCTTTSCSEEEEEEEECTTSCBCCCEEEE
T ss_pred             -----cceEEEEEecCccccCcCCCCcEEecceEe---cCC--CEEEEECCCCCCcCCCcCeEEEEECCCCcccccEEEE
Confidence                 467999999999999999999999999986   232  4789999999999999999999996 99999999999


Q ss_pred             EEe
Q 048017          563 VTW  565 (566)
Q Consensus       563 v~~  565 (566)
                      |+.
T Consensus       654 ~~~  656 (656)
T 1k3i_A          654 VTQ  656 (656)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            973
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 566
d1k3ia1102 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal 6e-29
d1k3ia3387 b.69.1.1 (A:151-537) Galactose oxidase, central do 3e-25
>d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 102 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Galactose oxidase, C-terminal domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score =  108 bits (271), Expect = 6e-29
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 14/109 (12%)

Query: 457 RPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNV 516
           RP I    +  ++V       ++        S     SL+     TH+   +QR + L +
Sbjct: 6   RPKITRTST--QSVKVGGRITIST------DSSISKASLIRYGTATHTVNTDQRRIPLTL 57

Query: 517 VSVSQLSVYAYKVVVNGPPTATVAPPGYYMMFVVHA-GIPSHAVWVKVT 564
            +               P  + VA PGY+M+FV+++ G+PS A  ++VT
Sbjct: 58  TNNG-----GNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRVT 101
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 100.0
d1k3ia1102 Galactose oxidase, C-terminal domain {Fungi (Fusar 100.0
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 99.98
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 99.94
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 99.93
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 97.4
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 97.03
d1tbga_340 beta1-subunit of the signal-transducing G protein 96.94
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 96.67
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 96.1
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 96.01
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 95.82
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 95.7
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 95.4
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 95.36
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 95.3
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 94.48
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 93.79
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 93.41
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 93.3
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 93.14
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 92.96
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 92.88
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 92.51
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 91.96
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 91.71
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 89.57
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 89.06
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 88.7
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 86.96
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 86.75
d1tbga_340 beta1-subunit of the signal-transducing G protein 85.78
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 85.1
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 81.62
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 81.26
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 81.08
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=100.00  E-value=7.6e-47  Score=393.42  Aligned_cols=355  Identities=18%  Similarity=0.283  Sum_probs=257.6

Q ss_pred             CCCCCCCCceEEccCCCccceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeC
Q 048017           45 NMPSKSGGQWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPL  124 (566)
Q Consensus        45 ~~~~~~~g~W~~l~~~~~~~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l  124 (566)
                      +.|.+..|+|+...+.+..+..++++..+||||++||.....  ..   +         .......+++|||++++|+.+
T Consensus         2 ~~~~p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~--~~---~---------~~~~~~~~~~yd~~t~~w~~~   67 (387)
T d1k3ia3           2 TAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDA--FG---G---------SPGGITLTSSWDPSTGIVSDR   67 (387)
T ss_dssp             CCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTT--TC---S---------CCCSEEEEEEECTTTCCBCCC
T ss_pred             CCCCCCCCccCCcCCCCccccEEEEEeeCCEEEEEEeecCcc--cC---C---------CCCceeEEEEEECCCCcEeec
Confidence            345566799999876544444344454599999999975211  00   0         001235688999999999887


Q ss_pred             cC---CCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcCccC
Q 048017          125 LL---QTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRV  201 (566)
Q Consensus       125 ~~---~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~  201 (566)
                      +.   .+.++|++.+++.||+||++||..  .+++++|||.   +++|++.+. |+.+||||+++++.||+||++||...
T Consensus        68 ~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~--~~~~~~yd~~---~~~w~~~~~-~~~~r~~~~~~~~~dG~v~v~GG~~~  141 (387)
T d1k3ia3          68 TVTVTKHDMFCPGISMDGNGQIVVTGGND--AKKTSLYDSS---SDSWIPGPD-MQVARGYQSSATMSDGRVFTIGGSWS  141 (387)
T ss_dssp             EEEECSCCCSSCEEEECTTSCEEEECSSS--TTCEEEEEGG---GTEEEECCC-CSSCCSSCEEEECTTSCEEEECCCCC
T ss_pred             CCCCCCcccceeEEEEecCCcEEEeecCC--CcceeEecCc---cCccccccc-ccccccccceeeecCCceeeeccccc
Confidence            54   456789999999999999999964  5789999999   999999998 99999999999999999999999753


Q ss_pred             -----CeEEEE-eCCCCCCCeeeeccccc----cCCCC--CCCCccceEEEecCCcEEEEEcC--eeEEEeccCCeEEEe
Q 048017          202 -----FTYEFY-PKIDSLSSSLYLRFLIE----TRDPG--EENNLYPFLHLLPDGNLFIFANR--RSILFDYINNKLVKE  267 (566)
Q Consensus       202 -----~s~E~y-P~~~~~~~w~~~p~l~~----~~d~~--~~~~~yp~~~~l~~G~Ifv~Gg~--~~e~yDp~t~~W~~~  267 (566)
                           .++|+| |.++   +|..++-+..    .....  .....|+.++...+|++|++|+.  ..+.||+.+..|. .
T Consensus       142 ~~~~~~~v~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~-~  217 (387)
T d1k3ia3         142 GGVFEKNGEVYSPSSK---TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-S  217 (387)
T ss_dssp             SSSCCCCEEEEETTTT---EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-E
T ss_pred             cccccceeeeecCCCC---ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe-e
Confidence                 368999 8875   7875542211    00000  11345777888899999999985  4678999999997 4


Q ss_pred             ecccCCCCC-CccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCC-
Q 048017          268 FPVIPGNDK-RNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKY-  345 (566)
Q Consensus       268 ~p~lp~~~~-r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~-  345 (566)
                      .+.++.... ......+.+++++..              ++|||++||.......         ......+.++..... 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~g~v~v~GG~~~~~~~---------~~~~~~~~~~~~~~~~  274 (387)
T d1k3ia3         218 AGKRQSNRGVAPDAMCGNAVMYDAV--------------KGKILTFGGSPDYQDS---------DATTNAHIITLGEPGT  274 (387)
T ss_dssp             EEECEETTEECCCCBTCEEEEEETT--------------TTEEEEECCBSSSSSS---------BCCCCEEEEECCSTTS
T ss_pred             ccccccCcccCcccccccEEEeecc--------------CCceEEEEeccCCCCC---------cccceeeccccccccc
Confidence            554433200 011123445555422              7999999997532211         122333444443322 


Q ss_pred             --CCeEEe-ccCCCcccceeEEccCCeEEEEcCCCCCCCC-------CccccCc-CCcEEeccCCCCCCcceeEEEEcCC
Q 048017          346 --PVWSME-FMPMPRVMSDMLLLPSGDVIIINGASNGTAG-------WEDAEEP-DRRFVVLNPSKIPRMYHSSAVVLPD  414 (566)
Q Consensus       346 --~~W~~~-~M~~~R~~~~~vvLpdG~V~vvGG~~~g~~~-------~~~~ydP-t~~Wt~~~~~~~~R~yhs~a~Llpd  414 (566)
                        ..|+.. +|+.+|.++++++++||+|||+||...+...       ..++||| +++|+.+++|+++|.+||+++|++|
T Consensus       275 ~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~d  354 (387)
T d1k3ia3         275 SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPD  354 (387)
T ss_dssp             CCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTT
T ss_pred             CCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCC
Confidence              345555 8999999999999999999999997643221       1257999 9999999999999999999999999


Q ss_pred             CcEEEecCCCCcccccCCCCCCCcceEEEEeccccCCC
Q 048017          415 GRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPE  452 (566)
Q Consensus       415 G~V~v~GG~~~~~~~~~~~~~~~~~~vE~y~Ppyl~~~  452 (566)
                      |||||+||+.+++.      ...+.++|+|+|||||++
T Consensus       355 G~v~v~GG~~~~~~------~~~~~~~e~y~Ppyl~~~  386 (387)
T d1k3ia3         355 GRVFNGGGGLCGDC------TTNHFDAQIFTPNYLYNS  386 (387)
T ss_dssp             SCEEEEECCCCTTC------SCCCCEEEEEECGGGBCT
T ss_pred             CEEEEEeCCCcCCC------CcccceEEEEcchhccCC
Confidence            99999999876643      235789999999999965
>d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure