Citrus Sinensis ID: 048056

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
RPVTTEAWNTTGLHVHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVRMLVTKLGMREEEKRKR
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccccEEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccc
Coil and Loop (DISEMBL)
rpvtteawnttglhvHRKRIAHMtffwghntqvlfsgwpgsstgMYVLALVFVFSLAVIVEWLSHynivkpgaSRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVRMLVTKLgmreeekrkr
Flexible Loop (DISEMBL)
rpvtteawnttglhvhRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVRMLvtklgmreeekrkr
Low Complexity Region (SEG)
RPVTTEAWNTTGLHVHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYvlalvfvfslavivEWLSHYNIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVRMLVTKLGMREEEKRKR
Disordered region (IsUnstruct)
******AWNTTGLHVHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVRMLVTKL**********
Disordered Region (DISOPRED)
**********************MTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRV*****************
Disordered Region (DISEMBL)
********NTTGLHVHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVRMLVTKLG*********
Disordered Region (DISPRO)
RPVTTEAWNTTGLHVHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVR****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RPVTTEAWNTTGLHVHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVRMLVTKLGMREEEKRKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q8GWP3	145	Copper transporter 6 OS=A	yes	no	0.720	0.710	0.625	6e-32
Q39065	170	Copper transporter 1 OS=A	no	no	0.713	0.6	0.588	5e-31
Q8SAA5	145	Copper transporter 4 OS=A	no	no	0.860	0.848	0.515	6e-31
Q9STG2	158	Copper transporter 2 OS=A	no	no	0.699	0.632	0.574	1e-28
Q9FGU8	151	Copper transporter 3 OS=A	no	no	0.769	0.728	0.477	4e-25
Q94EE4	161	Copper transporter 1 OS=O	yes	no	0.846	0.751	0.484	4e-25
Q60EN8	151	Copper transporter 2 OS=O	no	no	0.881	0.834	0.458	2e-22
Q7XTF8	184	Copper transporter 6 OS=O	no	no	0.741	0.576	0.438	6e-13
Q93VM8	146	Copper transporter 5 OS=A	no	no	0.720	0.705	0.335	6e-11
Q10KT6	183	Copper transporter 4 OS=O	no	no	0.692	0.540	0.414	2e-10

>sp|Q8GWP3|COPT6_ARATH Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 86/104 (82%), Gaps = 1/104 (0%)

Query: 22  HMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKP-GASRVAAGL 80
           HMTFFWG NT++LFSGWPG+S GMYVL L+ VF LAVIVEWL+H +I++  G++  A GL
Sbjct: 26  HMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAHSSILRGRGSTSRAKGL 85

Query: 81  FKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGS 124
            +T ++ ++ GLAY+V+LAVMSFNGG+FI A+ G AVG++LFGS
Sbjct: 86  VQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLFGS 129

Involved in the transport of copper.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39065|COPT1_ARATH Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 87/107 (81%), Gaps = 5/107 (4%)

Query: 24  TFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVK----PGASRVAAG 79
           TFFWG NT+VLFSGWPG+S+GMY L L+FVF LAV+ EWL+H ++++      A+R AAG
Sbjct: 45  TFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANR-AAG 103

Query: 80  LFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRV 126
           L +T ++ +R+GLAY+V+LAVMSFN G+F+ A+ GHAVG++LFGS+ 
Sbjct: 104 LIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQT 150

Copper transporter involved in copper acquisition and transport in leaves. Required for copper homeostasis and normal plant growth and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8SAA5|COPT4_ARATH Copper transporter 4 OS=Arabidopsis thaliana GN=COPT4 PE=2 SV=2

 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 90/130 (69%), Gaps = 7/130 (5%)

Query: 3   VTTEAWNTTGLHV----HRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAV 58
           V  EAWNTT        HR  + H TF+WG+N QVLFSGWPGS  GMY LAL+FVF LA 
Sbjct: 8   VVVEAWNTTTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAF 67

Query: 59  IVEWL---SHYNIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGH 115
           + EWL   S  + +K GA ++A   F+T ++ V+ G +Y+V+LAV+SFNGG+F+AA+ GH
Sbjct: 68  LAEWLARCSDASSIKQGADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGH 127

Query: 116 AVGYLLFGSR 125
           A+G+ +F  R
Sbjct: 128 ALGFAVFRGR 137

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STG2|COPT2_ARATH Copper transporter 2 OS=Arabidopsis thaliana GN=COPT2 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 80/101 (79%), Gaps = 1/101 (0%)

Query: 25  FFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVK-PGASRVAAGLFKT 83
           FFWG NT+VLFSGWPG+S+GMY L L+ +F LAVI EWL+H  I++  G++  AAGL +T
Sbjct: 34  FFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQT 93

Query: 84  GLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGS 124
            ++ ++ GL+Y+V+LAVMSFN G+FI A+ G+ VG+ LFGS
Sbjct: 94  AVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFGS 134

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGU8|COPT3_ARATH Copper transporter 3 OS=Arabidopsis thaliana GN=COPT3 PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 77/113 (68%), Gaps = 3/113 (2%)

Query: 16  HRKR---IAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPG 72
           HR R   + HMTFFWG  T+VLF GWPG+S  MY + L  +F ++   E LS    +K G
Sbjct: 22  HRHRHGGMMHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSG 81

Query: 73  ASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSR 125
            + +  GL +T ++ VR  L+Y+V+LAVMSFNGG+F+AA+ G  +G+++FGSR
Sbjct: 82  PASLGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSR 134

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94EE4|COPT1_ORYSJ Copper transporter 1 OS=Oryza sativa subsp. japonica GN=COPT1 PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/130 (48%), Positives = 83/130 (63%), Gaps = 9/130 (6%)

Query: 19  RIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWL-----SHYNIVKPGA 73
           R  HMTFFWG N++VLF+ WPG+  GMY LAL+FVF+LAVIVE+L               
Sbjct: 31  RYTHMTFFWGKNSEVLFTMWPGTRGGMYALALIFVFALAVIVEFLGSRRADACLAALARR 90

Query: 74  SRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVRMLVTKL 133
           +  A GL +  +H VRVG+AY+++LA+MSFNGG+F+ AV GHA G+L F    R  +   
Sbjct: 91  APAAGGLARAAVHTVRVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAF----RAGLCGG 146

Query: 134 GMREEEKRKR 143
             + EE RK 
Sbjct: 147 PAQVEEDRKN 156

Involved in the transport of copper, in cooperation with SWEET11 and COPT2. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60EN8|COPT2_ORYSJ Copper transporter 2 OS=Oryza sativa subsp. japonica GN=COPT2 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 87/133 (65%), Gaps = 7/133 (5%)

Query: 15  VHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVK---- 70
           V + R  HMTFFWG NT+VLF+ WPG+  GMY LA++F+F+LAV++E+   Y +++    
Sbjct: 17  VKKARYMHMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEF-RGYRVLEARLA 75

Query: 71  PGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVRMLV 130
              +  AA   +T +H VRVG+AY+++LA+MSFNGG+F+A V GHA G+L F  R  +  
Sbjct: 76  RRRAPRAAAALRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAF--RAGLCG 133

Query: 131 TKLGMREEEKRKR 143
                  EE RK 
Sbjct: 134 GGPAPPLEEDRKN 146

Involved in the transport of copper, in cooperation with SWEET11 and COPT1. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XTF8|COPT6_ORYSJ Copper transporter 6 OS=Oryza sativa subsp. japonica GN=COPT6 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 70/121 (57%), Gaps = 15/121 (12%)

Query: 22  HMTFFWGHNTQVLFSGWPGS-STGMYVLALVFVFSLAVIVEWLS--------------HY 66
           HMTFFW     VL  GWPG    GMY L L+FV +LA + E LS                
Sbjct: 39  HMTFFWSDRAVVLIRGWPGERGAGMYALCLLFVLALAALTEGLSVLSRRLARRGGGAASS 98

Query: 67  NIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRV 126
           +  +P  +  ++    T +H  R+G+AY+V+LAVMSFN G+ +AAV GHA+G+LL  SRV
Sbjct: 99  DGGRPAPAPASSAALLTAVHAARMGMAYLVMLAVMSFNVGVLLAAVAGHALGFLLARSRV 158

Query: 127 R 127
           R
Sbjct: 159 R 159

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93VM8|COPT5_ARATH Copper transporter 5 OS=Arabidopsis thaliana GN=COPT5 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 25/128 (19%)

Query: 22  HMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIV---------KPG 72
           HMTF+WG    +LF  W   S   Y+L L+  F  +   ++L +  I           P 
Sbjct: 3   HMTFYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLENRRIQFKSLSSSRRAPP 62

Query: 73  ASRVAAG-----LFKTG-----------LHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHA 116
             R ++G     + K+G           L GV   + Y+++LA MSFNGG+FIA VVG  
Sbjct: 63  PPRSSSGVSAPLIPKSGTRSAAKAASVLLFGVNAAIGYLLMLAAMSFNGGVFIAIVVGLT 122

Query: 117 VGYLLFGS 124
            GY +F S
Sbjct: 123 AGYAVFRS 130

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10KT6|COPT4_ORYSJ Copper transporter 4 OS=Oryza sativa subsp. japonica GN=COPT4 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 12/111 (10%)

Query: 23  MTFFWGHNTQVLFSGWPG--SSTGMYVLALVFVFSLAVI----------VEWLSHYNIVK 70
           M+F WGH   VLF  WPG  +  GMY L L+ V +LA +          ++     +  +
Sbjct: 34  MSFTWGHRAVVLFPRWPGDRAGVGMYFLCLLLVLALAALAEALSAASRRLDLDLDLSRSR 93

Query: 71  PGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLL 121
               R    L   G+H  R+GLAY+V+LAVMSFN G+ +AAV GHA G+LL
Sbjct: 94  GRRRRRRQQLLAAGVHAARMGLAYLVMLAVMSFNAGVLLAAVAGHAAGFLL 144

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
255587211	163	copper transporter, putative [Ricinus co	0.797	0.699	0.710	3e-42
224104365	155	copper transporter [Populus trichocarpa]	0.860	0.793	0.656	2e-39
225440544	152	PREDICTED: copper transporter 6 [Vitis v	0.937	0.881	0.521	1e-35
224090831	114	copper transporter [Populus trichocarpa]	0.741	0.929	0.660	2e-35
449455070	193	PREDICTED: copper transporter 6-like [Cu	0.797	0.590	0.615	3e-33
225434750	177	PREDICTED: copper transporter 1 [Vitis v	0.720	0.581	0.621	3e-33
449471170	158	PREDICTED: copper transporter 6-like [Cu	0.874	0.791	0.571	5e-33
224104361	162	copper transporter [Populus trichocarpa]	0.720	0.635	0.650	5e-33
297745980	160	unnamed protein product [Vitis vinifera]	0.720	0.643	0.621	6e-33
225434748	151	PREDICTED: copper transporter 6 [Vitis v	0.720	0.682	0.621	2e-32

>gi|255587211|ref|XP_002534182.1| copper transporter, putative [Ricinus communis] gi|223525742|gb|EEF28206.1| copper transporter, putative [Ricinus communis]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/114 (71%), Positives = 100/114 (87%)

Query: 13  LHVHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPG 72
           +HVHRK + HMTFFWGH T+VLF GWPGSS+GMY LAL+FVF LAV+VEW ++ +I+KPG
Sbjct: 33  IHVHRKALTHMTFFWGHTTEVLFKGWPGSSSGMYALALIFVFVLAVVVEWFNYCSIIKPG 92

Query: 73  ASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRV 126
            ++VAAG F+TG+H VR GL+YMV+LAVMSFNGGIF+AAV GHAVG+ LFGS+V
Sbjct: 93  TNKVAAGFFRTGMHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFSLFGSKV 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104365|ref|XP_002313412.1| copper transporter [Populus trichocarpa] gi|222849820|gb|EEE87367.1| copper transporter [Populus trichocarpa]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 99/125 (79%), Gaps = 2/125 (1%)

Query: 2   PVTTEAWNTTGLHVHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVE 61
           P +T    T G+    K + HMTFFWG +T +LFSGWPG+STGMYVLALVF+F LAV+VE
Sbjct: 13  PPSTPMNGTDGMD--HKMMTHMTFFWGKDTLILFSGWPGTSTGMYVLALVFIFVLAVLVE 70

Query: 62  WLSHYNIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLL 121
           WLSH  +VKPG++ VAAGL +  +H VRVGLAYMV+LAVMSFNGG+FI AV GH VG+ +
Sbjct: 71  WLSHCRLVKPGSNNVAAGLIQALMHAVRVGLAYMVMLAVMSFNGGVFIVAVAGHLVGFFI 130

Query: 122 FGSRV 126
           FGSRV
Sbjct: 131 FGSRV 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440544|ref|XP_002276084.1| PREDICTED: copper transporter 6 [Vitis vinifera] gi|321496072|gb|ADW93913.1| copper transporter [Vitis vinifera]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 101/140 (72%), Gaps = 6/140 (4%)

Query: 4   TTEAWNTTGLHVHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWL 63
           T    N +G H+H   + HMTFFWG N ++LFSGWPG+S+GMY LAL+ VF +A+++EWL
Sbjct: 14  TPPVANVSGTHLH---LIHMTFFWGKNAEILFSGWPGTSSGMYALALILVFVVALLLEWL 70

Query: 64  SHYNIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFG 123
           S  +++KPG   V  GL +T L+ +R G +YM++LAVMSFNGGIF+AAV GHA+G+L+FG
Sbjct: 71  SRSSLLKPGPHNVTTGLLQTALYAIRSGFSYMLMLAVMSFNGGIFLAAVAGHALGFLIFG 130

Query: 124 SRVRMLVTKLGMREEEKRKR 143
           SRV     K G+   ++R  
Sbjct: 131 SRV---FKKTGVTASDERSD 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090831|ref|XP_002309100.1| copper transporter [Populus trichocarpa] gi|222855076|gb|EEE92623.1| copper transporter [Populus trichocarpa]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/106 (66%), Positives = 90/106 (84%)

Query: 22  HMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGLF 81
           HMTFFWGH T+VLF GWPGSSTGMY +AL FVF+LA++VE  S ++++KPG ++ AAG F
Sbjct: 4   HMTFFWGHKTEVLFKGWPGSSTGMYAVALTFVFALAILVEVFSLFSVIKPGTNKAAAGFF 63

Query: 82  KTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVR 127
           +TG++ VR GL+YMV+LAVMSFNGG+F+AAV GHAVG+ LFG R +
Sbjct: 64  QTGMYAVRSGLSYMVMLAVMSFNGGVFLAAVGGHAVGFALFGGRAK 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455070|ref|XP_004145276.1| PREDICTED: copper transporter 6-like [Cucumis sativus] gi|449510892|ref|XP_004163803.1| PREDICTED: copper transporter 6-like [Cucumis sativus]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 90/117 (76%), Gaps = 3/117 (2%)

Query: 13  LHVHR--KRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVK 70
           +H H       HMTFFWG NTQVLFSGWPG  +GMY +ALVFVF LAV VEWLS + ++ 
Sbjct: 56  MHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVEWLSCWRMMT 115

Query: 71  P-GASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRV 126
             G   VAAG+ +T +HG+R+G+AY+V+LA+MSFNGG+FI AV GH VG+L+FGSRV
Sbjct: 116 EVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFLVFGSRV 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434750|ref|XP_002280132.1| PREDICTED: copper transporter 1 [Vitis vinifera] gi|321496076|gb|ADW93915.1| copper transporter [Vitis vinifera]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 88/103 (85%)

Query: 24  TFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGLFKT 83
           TF+WG   ++LFSGWPG+ +GMY LAL+ VF +A+IVEWLSH+ ++KPG++ VAAG+ +T
Sbjct: 54  TFYWGKKAEILFSGWPGTRSGMYALALIVVFVMAIIVEWLSHFQLIKPGSTHVAAGVVQT 113

Query: 84  GLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRV 126
            LH +R+GL YMV+LA+MSFNGG+F+ AV GHAVG+L+FGSR+
Sbjct: 114 LLHAIRMGLEYMVMLALMSFNGGMFLVAVAGHAVGFLVFGSRL 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449471170|ref|XP_004153229.1| PREDICTED: copper transporter 6-like [Cucumis sativus]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/126 (57%), Positives = 93/126 (73%), Gaps = 1/126 (0%)

Query: 2   PVTTEAWNTTGLHVHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVE 61
           P +  + +    H       HMTFFWG NTQVLFSGWPG  +GMY +ALVFVF LAV VE
Sbjct: 12  PTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVAVE 71

Query: 62  WLSHYNIV-KPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYL 120
           WLS + ++ + G   VAAG+ +T +HG+R+G+AY+V+LA+MSFNGG+FI AV GH VG+L
Sbjct: 72  WLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFIVAVAGHMVGFL 131

Query: 121 LFGSRV 126
           +FGSRV
Sbjct: 132 VFGSRV 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104361|ref|XP_002313411.1| copper transporter [Populus trichocarpa] gi|118485983|gb|ABK94836.1| unknown [Populus trichocarpa] gi|222849819|gb|EEE87366.1| copper transporter [Populus trichocarpa]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 89/106 (83%), Gaps = 3/106 (2%)

Query: 24  TFFWGHNTQVLFSGWPGSSTG---MYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGL 80
           TFFWG +T++LFSGWPGSS     MY +AL+FVF L+++VEWLSH  ++KPG++ VAAGL
Sbjct: 39  TFFWGKSTEILFSGWPGSSDKRPHMYFVALLFVFVLSILVEWLSHCQLMKPGSNHVAAGL 98

Query: 81  FKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRV 126
            +T LH +RVGLAYMV+LA+MSFNGG+F+AAV GH +G+L FGSRV
Sbjct: 99  VQTLLHALRVGLAYMVMLAIMSFNGGVFLAAVAGHTLGFLFFGSRV 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745980|emb|CBI16036.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 88/103 (85%)

Query: 24  TFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGLFKT 83
           TF+WG   ++LFSGWPG+ +GMY LAL+ VF +A+IVEWLSH+ ++KPG++ VAAG+ +T
Sbjct: 37  TFYWGKKAEILFSGWPGTRSGMYALALIVVFVMAIIVEWLSHFQLIKPGSTHVAAGVVQT 96

Query: 84  GLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRV 126
            LH +R+GL YMV+LA+MSFNGG+F+ AV GHAVG+L+FGSR+
Sbjct: 97  LLHAIRMGLEYMVMLALMSFNGGMFLVAVAGHAVGFLVFGSRL 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434748|ref|XP_002280121.1| PREDICTED: copper transporter 6 [Vitis vinifera] gi|321496078|gb|ADW93916.1| copper transporter [Vitis vinifera]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 86/103 (83%)

Query: 24  TFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGLFKT 83
           TF+WG   ++LFSGWPG+ +GMY LAL+ VF + +IVEWLS+  ++KPG++  AAGL +T
Sbjct: 33  TFYWGKEAEILFSGWPGARSGMYALALIVVFVMGIIVEWLSYCRLIKPGSTHAAAGLVQT 92

Query: 84  GLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRV 126
            LH +R+GLAYMV+LA+MSFNGG+F+ AV GHAVG+L+FGSRV
Sbjct: 93  LLHTIRIGLAYMVMLALMSFNGGVFLVAVAGHAVGFLVFGSRV 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2153306	170	COPT1 "copper transporter 1" [	0.811	0.682	0.512	1e-29
TAIR|locus:504955905	145	COPT4 "copper transporter 4" [	0.860	0.848	0.453	3.5e-27
TAIR|locus:504955951	145	COPT6 "copper transporter 6" [	0.776	0.765	0.504	7.3e-27
TAIR|locus:2102752	158	COPT2 "copper transporter 2" [	0.839	0.759	0.467	1.5e-26
TAIR|locus:2153311	151	COPT3 "copper transporter 3" [	0.783	0.741	0.460	4.2e-24
UNIPROTKB|Q60EN8	151	COPT2 "Copper transporter 2" [	0.748	0.708	0.455	5.5e-22
UNIPROTKB|Q94EE4	161	COPT1 "Copper transporter 1" [	0.727	0.645	0.449	3.5e-20
TAIR|locus:2180474	146	COPT5 "copper transporter 5" [	0.391	0.383	0.491	6.8e-13
DICTYBASE|DDB_G0285545	146	DDB_G0285545 "Ctr copper trans	0.321	0.315	0.456	4.2e-10
UNIPROTKB|F1Q0F2	190	SLC31A1 "Uncharacterized prote	0.356	0.268	0.352	3.8e-08

TAIR|locus:2153306 COPT1 "copper transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 62/121 (51%), Positives = 85/121 (70%)

Query:     9 NTTGLHVHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYXXXXXXXXXXXXXXEWLSHYNI 68
             N  G H H K + HMTFFWG NT+VLFSGWPG+S+GMY              EWL+H ++
Sbjct:    30 NEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSL 89

Query:    69 VK----PGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGS 124
             ++      A+R AAGL +T ++ +R+GLAY+V+LAVMSFN G+F+ A+ GHAVG++LFGS
Sbjct:    90 LRGSTGDSANR-AAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGS 148

Query:   125 R 125
             +
Sbjct:   149 Q 149

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;IGI;ISS

GO:0006825 "copper ion transport" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

TAIR|locus:504955905 COPT4 "copper transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 59/130 (45%), Positives = 80/130 (61%)

Query:     3 VTTEAWNTTGLHV----HRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYXXXXXXXXXXXX 58
             V  EAWNTT        HR  + H TF+WG+N QVLFSGWPGS  GMY            
Sbjct:     8 VVVEAWNTTTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAF 67

Query:    59 XXEWL---SHYNIVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGH 115
               EWL   S  + +K GA ++A   F+T ++ V+ G +Y+V+LAV+SFNGG+F+AA+ GH
Sbjct:    68 LAEWLARCSDASSIKQGADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGH 127

Query:   116 AVGYLLFGSR 125
             A+G+ +F  R
Sbjct:   128 ALGFAVFRGR 137

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

TAIR|locus:504955951 COPT6 "copper transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 57/113 (50%), Positives = 78/113 (69%)

Query:    14 HVHRKRIA-HMTFFWGHNTQVLFSGWPGSSTGMYXXXXXXXXXXXXXXEWLSHYNIVKP- 71
             H +   I  HMTFFWG NT++LFSGWPG+S GMY              EWL+H +I++  
Sbjct:    17 HTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAHSSILRGR 76

Query:    72 GASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGS 124
             G++  A GL +T ++ ++ GLAY+V+LAVMSFNGG+FI A+ G AVG++LFGS
Sbjct:    77 GSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLFGS 129

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2102752 COPT2 "copper transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 58/124 (46%), Positives = 82/124 (66%)

Query:     2 PVTTEAWNTTGLHVHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYXXXXXXXXXXXXXXE 61
             P ++   N T  H+    + HMTFFWG NT+VLFSGWPG+S+GMY              E
Sbjct:    14 PSSSSMSNHTTPHM---MMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAE 70

Query:    62 WLSHYNIVK-PGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYL 120
             WL+H  I++  G++  AAGL +T ++ ++ GL+Y+V+LAVMSFN G+FI A+ G+ VG+ 
Sbjct:    71 WLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFF 130

Query:   121 LFGS 124
             LFGS
Sbjct:   131 LFGS 134

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0015678 "high-affinity copper ion transport" evidence=IGI

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2153311 COPT3 "copper transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 52/113 (46%), Positives = 71/113 (62%)

Query:    14 HVHRKR-IAHMTFFWGHNTQVLFSGWPGSSTGMYXXXXXXXXXXXXXXEWLSHYNIVKPG 72
             H HR   + HMTFFWG  T+VLF GWPG+S  MY              E LS    +K G
Sbjct:    22 HRHRHGGMMHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSG 81

Query:    73 ASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSR 125
              + +  GL +T ++ VR  L+Y+V+LAVMSFNGG+F+AA+ G  +G+++FGSR
Sbjct:    82 PASLGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSR 134

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

UNIPROTKB|Q60EN8 COPT2 "Copper transporter 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 51/112 (45%), Positives = 69/112 (61%)

Query:    15 VHRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYXXXXXXXXXXXXXXEWLSHY----NIVK 70
             V + R  HMTFFWG NT+VLF+ WPG+  GMY              E+  +      + +
Sbjct:    17 VKKARYMHMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGYRVLEARLAR 76

Query:    71 PGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLF 122
               A R AA L +T +H VRVG+AY+++LA+MSFNGG+F+A V GHA G+L F
Sbjct:    77 RRAPRAAAAL-RTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAF 127

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q94EE4 COPT1 "Copper transporter 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 49/109 (44%), Positives = 65/109 (59%)

Query:    19 RIAHMTFFWGHNTQVLFSGWPGSSTGMYXXXXXXXXXXXXXXEWLSHYNI---VKPGASR 75
             R  HMTFFWG N++VLF+ WPG+  GMY              E+L        +   A R
Sbjct:    31 RYTHMTFFWGKNSEVLFTMWPGTRGGMYALALIFVFALAVIVEFLGSRRADACLAALARR 90

Query:    76 V--AAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLF 122
                A GL +  +H VRVG+AY+++LA+MSFNGG+F+ AV GHA G+L F
Sbjct:    91 APAAGGLARAAVHTVRVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAF 139

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

TAIR|locus:2180474 COPT5 "copper transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
 Identities = 28/57 (49%), Positives = 35/57 (61%)

Query:    68 IVKPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGS 124
             I K G +R AA      L GV   + Y+++LA MSFNGG+FIA VVG   GY +F S
Sbjct:    75 IPKSG-TRSAAKAASVLLFGVNAAIGYLLMLAAMSFNGGVFIAIVVGLTAGYAVFRS 130

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015680 "intracellular copper ion transport" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

DICTYBASE|DDB_G0285545 DDB_G0285545 "Ctr copper transporter family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 103 (41.3 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query:    80 LFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSR 125
             L+KT +H +   + Y ++L  MSFNGGI I+ V+G  VG+ LFG +
Sbjct:    87 LWKTIVHMIAFIVNYTIMLIFMSFNGGICISCVLGIGVGFYLFGQK 132

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1Q0F2 SLC31A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 89 (36.4 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query:    80 LFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVRMLV 130
             L +T LH ++V ++Y ++L  M++NG + IA   G   GY LF  +  ++V
Sbjct:   133 LLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKAVVV 183

GO:0016021 "integral to membrane" evidence=IEA

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GWP3	COPT6_ARATH	No assigned EC number	0.625	0.7202	0.7103	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00091265 copper transporter (155 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam04145	102	pfam04145, Ctr, Ctr copper transporter family	4e-29

>gnl|CDD|217925 pfam04145, Ctr, Ctr copper transporter family

 Score =  101 bits (255), Expect = 4e-29
 Identities = 42/102 (41%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 22  HMTFFWG-HNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVKPGASRVAAGL 80
            M F WG  +T VLFSGW  ++ GMY  + + +F LA++ E L      K     +   L
Sbjct: 2   SMLFNWGTKDTCVLFSGWHITTAGMYAGSCIAIFLLAILYEGLKRV-RRKLERMSLFQHL 60

Query: 81  FKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLF 122
            +  LH ++VGL+Y+++L VM++NGG+F+A V+G A+GY LF
Sbjct: 61  IRALLHFLQVGLSYLLMLIVMTYNGGLFLAVVLGAALGYFLF 102

The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionine probably coordinate copper during the process of metal transport. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG3386	155	consensus Copper transporter [Inorganic ion transp	100.0
PF04145	144	Ctr: Ctr copper transporter family; InterPro: IPR0	100.0
PF11446	55	DUF2897: Protein of unknown function (DUF2897); In	95.15
PF15050	133	SCIMP: SCIMP protein	82.51

>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.7e-36  Score=229.02  Aligned_cols=112  Identities=36%  Similarity=0.554  Sum_probs=101.3

Q ss_pred             CCCCceeeEEecccceeEeecCcccCChhHHHHHHHHHHHHHHHHHHHHhhhhc--------CCC----------Cc--h
Q 048056           16 HRKRIAHMTFFWGHNTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIV--------KPG----------AS--R   75 (143)
Q Consensus        16 ~~~~~M~M~F~~~~~~~lLF~~W~~~t~~~~~~sci~vf~lavl~e~l~~~r~~--------~p~----------~~--~   75 (143)
                      ..+|+|.|+|||+..+++||++|+++|.++|+++|+++|++|+++|+||+.|..        +|.          .+  .
T Consensus        11 ~~~~~m~M~f~~~~~~~iLF~~W~~~s~~~~~ls~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~~   90 (155)
T KOG3386|consen   11 GQTMMMMMFFHFKTIETILFSSWHITSAGGMALSCIAIFLLAVLYEALKFGREKLFRWQQLRQPTGHGHEIPLSGPSKLL   90 (155)
T ss_pred             cCCCceEEEEecCceeEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccCcchhh
Confidence            338999999999988999999999999999999999999999999999999863        110          01  1


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcceee
Q 048056           76 -VAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSRVR  127 (143)
Q Consensus        76 -~~~~l~~s~l~~~q~~l~YlLMLivMTyN~~l~laVvlG~~iGy~~F~~~~~  127 (143)
                       ...|++|+++|.+|+++||+|||++||||+|+++||++|+++||++|+++..
T Consensus        91 ~~~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~Lavv~Ga~~G~flF~~~~~  143 (155)
T KOG3386|consen   91 NSASHLIQTLLYVVQLGFSYLLMLIFMTFNGYLFLAVVLGAGVGYFLFGSLTF  143 (155)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhheeeeccc
Confidence             5679999999999999999999999999999999999999999999999865

>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation

Probab=100.00  E-value=2.8e-35  Score=217.32  Aligned_cols=102  Identities=38%  Similarity=0.603  Sum_probs=58.6

Q ss_pred             eeeEEeccc-ceeEeecCcccCChhHHHHHHHHHHHHHHHHHHHHhhhhcC-----------------CC--------C-
Q 048056           21 AHMTFFWGH-NTQVLFSGWPGSSTGMYVLALVFVFSLAVIVEWLSHYNIVK-----------------PG--------A-   73 (143)
Q Consensus        21 M~M~F~~~~-~~~lLF~~W~~~t~~~~~~sci~vf~lavl~e~l~~~r~~~-----------------p~--------~-   73 (143)
                      |+|+|||+. ++++||++|+++|.++|+++|+++|++|+++|+||.+|...                 ++        + 
T Consensus         1 M~M~F~~~~~~~~lLF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (144)
T PF04145_consen    1 MSMYFHWGTIRDCLLFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWARRRSRRASCSSSESRSRSDASSKS   80 (144)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHTTT-------------------------------------
T ss_pred             CeeEEEcCCCccEEEeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCccccccc
Confidence            899999998 99999999999999999999999999999999999998530                 00        0 


Q ss_pred             ---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 048056           74 ---------------SRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLF  122 (143)
Q Consensus        74 ---------------~~~~~~l~~s~l~~~q~~l~YlLMLivMTyN~~l~laVvlG~~iGy~~F  122 (143)
                                     .....|++|+++|++|++++|+|||+|||||+|+|+||++|.++||++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~~aVv~G~~~G~~~F  144 (144)
T PF04145_consen   81 SPSPSSTSPRSSRRRWFWSQHLIRALLHFVQVLLGYLLMLVVMTYNVYLFIAVVLGAGLGYFLF  144 (144)
T ss_dssp             ---------------------SHHHHHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHTTSS-GG
T ss_pred             ccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHheeeC
Confidence                           0125689999999999999999999999999999999999999999998

A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.

>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins

Probab=95.15  E-value=0.015  Score=37.13  Aligned_cols=28  Identities=18%  Similarity=0.198  Sum_probs=23.7

Q ss_pred             HhhhhHHHHHHHHHHHHHHHhhcceeec
Q 048056          101 MSFNGGIFIAAVVGHAVGYLLFGSRVRM  128 (143)
Q Consensus       101 MTyN~~l~laVvlG~~iGy~~F~~~~~~  128 (143)
                      |+.|+|+++.+++|..+|.+.-=+...+
T Consensus         1 ~~~~~wlIIviVlgvIigNia~LK~sAk   28 (55)
T PF11446_consen    1 STWNPWLIIVIVLGVIIGNIAALKYSAK   28 (55)
T ss_pred             CcchhhHHHHHHHHHHHhHHHHHHHhcc
Confidence            6899999999999999999987555543

>PF15050 SCIMP: SCIMP protein

Probab=82.51  E-value=1.6  Score=32.25  Aligned_cols=19  Identities=32%  Similarity=0.508  Sum_probs=13.0

Q ss_pred             hhHHHHHH---HHHHHHHHHhh
Q 048056          104 NGGIFIAA---VVGHAVGYLLF  122 (143)
Q Consensus       104 N~~l~laV---vlG~~iGy~~F  122 (143)
                      |.||++||   +++.++|..+|
T Consensus         7 nFWiiLAVaII~vS~~lglIly   28 (133)
T PF15050_consen    7 NFWIILAVAIILVSVVLGLILY   28 (133)
T ss_pred             chHHHHHHHHHHHHHHHHHHHH
Confidence            66777664   45777777777

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2ls3_A	29	High affinity copper uptake protein 1; HCTR1 TMDS,	98.83
2ls4_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	98.04
2ls2_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	97.18

>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=98.83  E-value=1.4e-12  Score=72.34  Aligned_cols=28  Identities=32%  Similarity=0.580  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048056           78 AGLFKTGLHGVRVGLAYMVVLAVMSFNG  105 (143)
Q Consensus        78 ~~l~~s~l~~~q~~l~YlLMLivMTyN~  105 (143)
                      .|++|+++|++|+++||+|||++||||+
T Consensus         1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~   28 (29)
T 2ls3_A            1 KHLLQTVLHIIQVVISYFLMLIFMTYNK   28 (29)
Confidence            4789999999999999999999999997

>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=98.04  E-value=4.4e-09  Score=56.76  Aligned_cols=24  Identities=38%  Similarity=0.722  Sum_probs=22.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhccee
Q 048056          103 FNGGIFIAAVVGHAVGYLLFGSRV  126 (143)
Q Consensus       103 yN~~l~laVvlG~~iGy~~F~~~~  126 (143)
                      ||+|+++||++|+++||++|+++.
T Consensus         1 YNg~l~iavvlGa~~Gyf~F~~~~   24 (26)
T 2ls4_A            1 YNGYLCIAVAAGAGTGYFLFSWKK   24 (26)
Confidence            899999999999999999999874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00